I: pbuilder: network access will be disabled during build
I: Current time: Wed Mar 25 14:14:48 +14 2026
I: pbuilder-time-stamp: 1774397688
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [voronota_1.29.4307+ds-1.dsc]
I: copying [./voronota_1.29.4307+ds.orig.tar.xz]
I: copying [./voronota_1.29.4307+ds-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./voronota_1.29.4307+ds-1.dsc: unsupported subcommand
dpkg-source: info: extracting voronota in voronota-1.29.4307+ds
dpkg-source: info: unpacking voronota_1.29.4307+ds.orig.tar.xz
dpkg-source: info: unpacking voronota_1.29.4307+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use-system-packages.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3256083/tmp/hooks/D01_modify_environment starting
debug: Running on codethink03-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Mar 25 00:14 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/3256083/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/3256083/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
BASH_VERSION='5.2.37(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=arm64
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DIRSTACK=()
DISTRIBUTION=unstable
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=aarch64
HOST_ARCH=arm64
IFS='
'
INVOCATION_ID=7d0631736d5644b48cf3508b68d0a22c
LANG=C
LANGUAGE=nl_BE:nl
LC_ALL=C
MACHTYPE=aarch64-unknown-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=3256083
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mAzWD9eY/pbuilderrc_mIkQ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mAzWD9eY/b2 --logfile b2/build.log voronota_1.29.4307+ds-1.dsc'
SUDO_GID=109
SUDO_UID=104
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://192.168.101.4:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3256083/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: cmake, debhelper-compat (= 13), help2man
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19912 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on help2man; however:
Package help2man is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget
0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded.
Need to get 38.1 MB of archives. After unpacking 148 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.5-2 [2267 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 28 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Get: 34 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
Get: 37 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB]
Get: 39 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB]
Get: 41 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 46 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB]
Get: 47 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get: 48 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.5-2 [9907 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 52 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 55 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 56 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 57 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 58 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 59 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 60 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 61 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB]
Fetched 38.1 MB in 0s (106 MB/s)
Preconfiguring packages ...
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(Reading database ... 19912 files and directories currently installed.)
Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ...
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Unpacking procps (2:4.0.4-7) ...
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Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
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Unpacking libmagic-mgc (1:5.45-3+b1) ...
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Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ...
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Unpacking cmake-data (3.31.5-2) ...
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Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
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Unpacking libbrotli1:arm64 (1.1.0-2+b6) ...
Selecting previously unselected package libkrb5support0:arm64.
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Unpacking libkrb5support0:arm64 (1.21.3-4) ...
Selecting previously unselected package libcom-err2:arm64.
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Unpacking libk5crypto3:arm64 (1.21.3-4) ...
Selecting previously unselected package libkeyutils1:arm64.
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Unpacking libkeyutils1:arm64 (1.6.3-4) ...
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Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ...
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/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_ses.cpp
[ 26%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_balls.cpp
[ 28%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_contacts.cpp
[ 30%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_values_bitmap.cpp
[ 32%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_expand_descriptors.cpp
[ 34%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_get_balls_from_atoms_file.cpp
[ 36%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_place_membrane.cpp
[ 39%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_plot_contacts.cpp
[ 41%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls.cpp
[ 43%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls_clashes.cpp
[ 45%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls_distances.cpp
In file included from /usr/include/c++/14/string:51,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33,
from /usr/include/c++/14/bits/allocator.h:46,
from /usr/include/c++/14/string:43:
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In file included from /usr/include/c++/14/string:51,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices_in_parallel.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33,
from /usr/include/c++/14/bits/allocator.h:46,
from /usr/include/c++/14/string:43:
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In file included from /usr/include/c++/14/bits/stl_tree.h:63,
from /usr/include/c++/14/set:62,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/search_for_spherical_collisions.h:4,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls_clashes.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33,
from /usr/include/c++/14/bits/allocator.h:46,
from /usr/include/c++/14/bits/stl_tree.h:64:
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In file included from /usr/include/c++/14/string:51,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_mock_solvent.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33,
from /usr/include/c++/14/bits/allocator.h:46,
from /usr/include/c++/14/string:43:
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In file included from /usr/include/c++/14/bits/stl_tree.h:63,
from /usr/include/c++/14/set:62,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/search_for_spherical_collisions.h:4,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_balls.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33,
from /usr/include/c++/14/bits/allocator.h:46,
from /usr/include/c++/14/bits/stl_tree.h:64:
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
[ 47%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls_sequences_pairings_stats.cpp
[ 50%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts.cpp
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
[ 52%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_depth_values.cpp
[ 54%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_interface_exposure_values.cpp
In file included from /usr/include/c++/14/vector:62,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/spheres_boundary_construction.h:4,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_ses.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33,
from /usr/include/c++/14/bits/allocator.h:46,
from /usr/include/c++/14/vector:63:
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
[ 56%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_simulating_unfolding.cpp
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
[ 58%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_contacts_solvation_values.cpp
[ 60%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_reprint_hbp.cpp
[ 63%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_rotational_optimization_demo.cpp
[ 65%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_run_script.cpp
In file included from /usr/include/c++/14/string:51,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_contacts.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33,
from /usr/include/c++/14/bits/allocator.h:46,
from /usr/include/c++/14/string:43:
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<SphereType>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<SphereType>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
[ 67%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_energy.cpp
[ 69%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_energy_stats.cpp
[ 71%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_global_energy_by_cuts.cpp
[ 73%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_potential.cpp
[ 76%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_potentials_stats.cpp
[ 78%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_quality.cpp
[ 80%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_scores.cpp
[ 82%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_simulate_potential_for_membrane_proteins.cpp
[ 84%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_split_atoms_file.cpp
[ 86%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contact_environments.cpp
[ 89%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contacts.cpp
[ 91%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_points.cpp
[ 93%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_balls_to_atoms_file.cpp
[ 95%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_qa_scores_in_casp_format.cpp
[ 97%] Building CXX object CMakeFiles/voronota.dir/src/voronota.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/voronota.cpp.o -MF CMakeFiles/voronota.dir/src/voronota.cpp.o.d -o CMakeFiles/voronota.dir/src/voronota.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp
/build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:59:22: warning: 'template<class _Arg, class _Result> class std::pointer_to_unary_function' is deprecated [-Wdeprecated-declarations]
59 | typedef std::pointer_to_unary_function<const voronota::auxiliaries::ProgramOptionsHandler&, void> FunctionPtr;
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:1:
/usr/include/c++/14/bits/stl_function.h:1102:11: note: declared here
1102 | class pointer_to_unary_function : public unary_function<_Arg, _Result>
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:51,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../auxiliaries/program_options_handler.h:4,
from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_run_script.cpp:1:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<T>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<T>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<T>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33,
from /usr/include/c++/14/bits/allocator.h:46,
from /usr/include/c++/14/string:43:
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<T>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<T>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<T>&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, std::vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const long unsigned int*, vector<long unsigned int> >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:606:31,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<T>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<T>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<T>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:380:33,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:398:44,
inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:334:26,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /usr/include/c++/14/bits/stl_vector.h:603:61,
inlined from 'static std::vector<long unsigned int> voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector<T>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector<T>&, const std::vector<long unsigned int>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42,
inlined from 'static std::vector<std::vector<long unsigned int> > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector<T>&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51:
/usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new'
151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
[100%] Linking CXX executable voronota
/usr/bin/cmake -E cmake_link_script CMakeFiles/voronota.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -rdynamic -Wl,--dependency-file=CMakeFiles/voronota.dir/link.d CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o CMakeFiles/voronota.dir/src/voronota.cpp.o -o voronota
make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu'
[100%] Built target voronota
make[2]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/voronota/
cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/voronota-1.29.4307\+ds/debian/voronota AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/voronota-1.29.4307+ds -B/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota
-- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-cadscore
-- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-contacts
-- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-resources
-- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-voromqa
-- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-volumes
-- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-pocket
-- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-membrane
make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-aarch64-linux-gnu'
dh_installdocs
dh_installchangelogs
debian/rules execute_before_dh_installman
make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds'
for BIN in ./voronota-*; \
do \
grep -qle --help ${BIN} && help2man ${BIN} --version-string 1.29.4307+ds --no-discard-stderr --no-info > ${BIN}.1; \
done
make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds'
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/voronota/usr/bin/voronota was not linked against ld-linux-aarch64.so.1 (it uses none of the library's symbols)
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'voronota' in '../voronota_1.29.4307+ds-1_arm64.deb'.
dpkg-deb: building package 'voronota-dbgsym' in '../voronota-dbgsym_1.29.4307+ds-1_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../voronota_1.29.4307+ds-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../voronota_1.29.4307+ds-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/3256083/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/3256083/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3256083 and its subdirectories
I: Current time: Wed Mar 25 14:23:15 +14 2026
I: pbuilder-time-stamp: 1774398195