I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 24 12:05:05 +14 2025 I: pbuilder-time-stamp: 1766527505 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unifrac_1.3-4.dsc] I: copying [./unifrac_1.3.orig.tar.gz] I: copying [./unifrac_1.3-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Sep 8 11:06:50 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-4.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.3 dpkg-source: info: unpacking unifrac_1.3.orig.tar.gz dpkg-source: info: unpacking unifrac_1.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch dpkg-source: info: applying numpy.patch dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying update_test_api_according_to_skbio.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/122499/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 23 22:05 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/122499/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/122499/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=66aacefeecdc4fb59e2f911cdfd2622f LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=122499 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZmWKwebZ/pbuilderrc_IMmx --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZmWKwebZ/b2 --logfile b2/build.log unifrac_1.3-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/122499/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.6.1), python3-iow, python3-pytest, libssu-dev (>= 1.4-2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.6.1); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.4-2~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libicu72{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} liblapacke{a} liblbfgsb0{a} libldap-2.5-0{a} libldap-dev{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnsl2{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssu-dev{a} libssu0{a} libssw0{a} libsz2{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtmglib3{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-iow{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-bottleneck python3-bs4 python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-pygments python3-tables wget 0 packages upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After unpacking 587 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.0-2 [850 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.0-2 [1838 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 50 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 dh-exec arm64 0.30+b1 [25.8 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 hdf5-helpers arm64 1.10.10+repack-4 [23.5 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 79 http://deb.debian.org/debian unstable/main arm64 libaec-dev arm64 1.1.3-1+b1 [20.2 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libcurl4-openssl-dev arm64 8.11.0-1 [447 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4 [118 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4 [88.1 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4 [39.0 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4 [21.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libhdf5-dev arm64 1.10.10+repack-4 [2697 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libtmglib3 arm64 3.12.0-3+b1 [98.8 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 liblapacke arm64 3.12.0-3+b1 [336 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 liblzf1 arm64 3.6-4+b2 [10.0 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B] Get: 138 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [1922 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.0-2 [1960 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.0-2 [4671 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libpython3-all-dev arm64 3.12.7-1 [1072 B] Get: 142 http://deb.debian.org/debian unstable/main arm64 libssu0 arm64 1.4-3+b3 [135 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libssu-dev arm64 1.4-3+b3 [9880 B] Get: 144 http://deb.debian.org/debian unstable/main arm64 libssw0 arm64 1.1-15+b1 [20.0 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.0-2 [730 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.7-1 [1052 B] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.0-2 [504 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-all-dev arm64 3.12.7-1 [1076 B] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-h5py-serial arm64 3.11.0-8+b1 [1238 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-h5py all 3.11.0-8 [14.9 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-click all 8.1.7-2 [94.3 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.13.1-6 [18.2 MB] Get: 162 http://deb.debian.org/debian unstable/main arm64 python3-biom-format arm64 2.1.16-1+b3 [160 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 python3-hdmedians arm64 0.14.2-5.1+b3 [147 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 169 http://deb.debian.org/debian unstable/main arm64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 python3-patsy all 1.0.1-1 [172 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 python3-statsmodels-lib arm64 0.14.4+dfsg-1+b1 [2087 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 python3-skbio arm64 0.6.2-4 [1433 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 python3-iow arm64 1.0.7-1+b1 [461 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.3-1 [249 kB] Fetched 116 MB in 1s (116 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20404 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21466 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_arm64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../002-python3.13-minimal_3.13.0-2_arm64.deb ... Unpacking python3.13-minimal (3.13.0-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../007-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../010-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... 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Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../020-comerr-dev_2.1-1.47.1-1+b1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package cython3. Preparing to unpack .../021-cython3_3.0.11+dfsg-1+b1_arm64.deb ... Unpacking cython3 (3.0.11+dfsg-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../022-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../023-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../024-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../025-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... 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Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libunbound8:arm64 (1.22.0-1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2+b2) ... Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.8-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up liblzf1:arm64 (3.6-4+b2) ... Setting up comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Setting up libssl-dev:arm64 (3.3.2-2) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2+b2) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libtool (2.4.7-8) ... Setting up libaec-dev:arm64 (1.1.3-1+b1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. 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Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-4) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:arm64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up python3-natsort (8.0.2-2) ... Setting up libkrb5-dev:arm64 (1.21.3-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up libcurl4-openssl-dev:arm64 (8.11.0-1) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:arm64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libssu-dev:arm64 (1.4-3+b3) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:arm64 (3.12.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-all-dev (3.12.7-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-hdmedians (0.14.2-5.1+b3) ... Setting up python3-statsmodels-lib:arm64 (0.14.4+dfsg-1+b1) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-6) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-h5py-serial (3.11.0-8+b1) ... Setting up python3-patsy (1.0.1-1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-h5py (3.11.0-8) ... Setting up python3-statsmodels (0.14.4+dfsg-1) ... Setting up python3-biom-format (2.1.16-1+b3) ... Setting up python3-skbio (0.6.2-4) ... Setting up python3-iow (1.0.7-1+b1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/122499/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/122499/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/unifrac-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../unifrac_1.3-4_source.changes dpkg-buildpackage: info: source package unifrac dpkg-buildpackage: info: source version 1.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running config I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build/temp.linux-aarch64-cpython-313/unifrac aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c unifrac/_api.c -o build/temp.linux-aarch64-cpython-313/unifrac/_api.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from unifrac/_api.c:1255: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_result_to_skbio_distance_matrix': unifrac/_api.c:23771:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 23771 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_14; __pyx_t_7+=1) { | ^ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27152:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27152 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/unifrac/_api.o -L/usr/lib/aarch64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-aarch64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build/temp.linux-aarch64-cpython-312/unifrac aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iunifrac -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c unifrac/_api.c -o build/temp.linux-aarch64-cpython-312/unifrac/_api.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from unifrac/_api.c:1255: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_result_to_skbio_distance_matrix': unifrac/_api.c:23771:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 23771 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_14; __pyx_t_7+=1) { | ^ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27152:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27152 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/unifrac/_api.o -L/usr/lib/aarch64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_api.cpython-312-aarch64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build; python3.13 -m pytest --pyargs unifrac ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/unifrac-1.3 plugins: typeguard-4.4.1 collected 49 items unifrac/tests/test_api.py ........................................ [ 81%] unifrac/tests/test_methods.py ......... [100%] =============================== warnings summary =============================== unifrac/__init__.py:9 /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 49 passed, 4 warnings in 35.65s ======================== I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build; python3.12 -m pytest --pyargs unifrac ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/unifrac-1.3 plugins: typeguard-4.4.1 collected 49 items unifrac/tests/test_api.py ........................................ [ 81%] unifrac/tests/test_methods.py ......... [100%] =============================== warnings summary =============================== unifrac/__init__.py:9 /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources .pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 49 passed, 4 warnings in 31.37s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-unifrac/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_meta.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_methods.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-313-pytest-8.3.3.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-313-pytest-8.3.3.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_api.py to test_api.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_meta.py to _meta.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_methods.py to _methods.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating unifrac.egg-info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt writing manifest file 'unifrac.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__pycache__/_meta.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__pycache__/_methods.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_api.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/test_api.py to test_api.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/_meta.py to _meta.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/_methods.py to _methods.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/unifrac-1.3' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/unifrac-1.3' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-unifrac-dbgsym' in '../python3-unifrac-dbgsym_1.3-4_arm64.deb'. dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_1.3-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../unifrac_1.3-4_arm64.buildinfo dpkg-genchanges --build=binary -O../unifrac_1.3-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/122499/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/122499/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/122499 and its subdirectories I: Current time: Wed Dec 24 12:11:03 +14 2025 I: pbuilder-time-stamp: 1766527863