I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 23 19:49:17 +14 2025 I: pbuilder-time-stamp: 1766468957 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ragout_2.3-5.dsc] I: copying [./ragout_2.3.orig.tar.xz] I: copying [./ragout_2.3-5.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Feb 2 10:15:47 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ragout_2.3-5.dsc: no acceptable signature found dpkg-source: info: extracting ragout in ragout-2.3 dpkg-source: info: unpacking ragout_2.3.orig.tar.xz dpkg-source: info: unpacking ragout_2.3-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying connected_component_subgraphs.patch dpkg-source: info: applying python3.12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/21580/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 23 05:49 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/21580/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/21580/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=3b56929aeb294dfd9d7f1b6639f53060 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=21580 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.doUO48gy/pbuilderrc_yCbg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.doUO48gy/b2 --logfile b2/build.log ragout_2.3-5.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/21580/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev, python3-networkx, python3-setuptools, python3-six dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-pkg-resources{a} python3-setuptools{a} python3-six{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-gdal python3-matplotlib python3-numpy python3-pydot python3-pygraphviz python3-scipy python3-yaml wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 50.6 MB of archives. After unpacking 229 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B] Get: 72 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-six all 1.16.0-7 [16.4 kB] Fetched 50.6 MB in 1s (81.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20404 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... 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Unpacking libpython3.12-dev:arm64 (3.12.7-3) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../49-libpython3-dev_3.12.7-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.12.7-1) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../50-python3.12-dev_3.12.7-3_arm64.deb ... Unpacking python3.12-dev (3.12.7-3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../51-python3-dev_3.12.7-1_arm64.deb ... Unpacking python3-dev (3.12.7-1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../52-python3-networkx_3.2.1-4_all.deb ... Unpacking python3-networkx (3.2.1-4) ... Selecting previously unselected package python3-six. Preparing to unpack .../53-python3-six_1.16.0-7_all.deb ... Unpacking python3-six (1.16.0-7) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 23 05:50:06 UTC 2025. Universal Time is now: Tue Dec 23 05:50:06 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:arm64 (3.12.7-3) ... Setting up libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:arm64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-six (1.16.0-7) ... Setting up python3.12-dev (3.12.7-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:arm64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/21580/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/21580/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ragout-2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ragout_2.3-5_source.changes dpkg-buildpackage: info: source package ragout dpkg-buildpackage: info: source version 2.3-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ragout-2.3' dh_auto_clean || true I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -f bin/ragout-maf2synteny bin/ragout-overlap rm -rf .pybuild find . -name "*.o" -delete make[1]: Leaving directory '/build/reproducible-path/ragout-2.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout copying ragout/main.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout copying ragout/__version__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout copying ragout/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/assembly_graph copying ragout/assembly_graph/assembly_refine.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/assembly_graph copying ragout/assembly_graph/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/assembly_graph creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/repeat_resolver.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/permutation.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/chimera_detector.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/breakpoint_graph.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/inferer.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph copying ragout/breakpoint_graph/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/maf2synteny copying ragout/maf2synteny/maf2synteny.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/maf2synteny copying ragout/maf2synteny/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/maf2synteny creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/overlap copying ragout/overlap/overlap.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/overlap copying ragout/overlap/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/overlap creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers copying ragout/parsers/recipe_parser.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers copying ragout/parsers/fasta_parser.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers copying ragout/parsers/phylogeny_parser.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers copying ragout/parsers/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/phylogeny copying ragout/phylogeny/inferer.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/phylogeny copying ragout/phylogeny/phylogeny.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/phylogeny copying ragout/phylogeny/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/phylogeny creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder copying ragout/scaffolder/scaffolder.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder copying ragout/scaffolder/output_generator.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder copying ragout/scaffolder/merge_iters.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder copying ragout/scaffolder/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared copying ragout/shared/datatypes.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared copying ragout/shared/utils.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared copying ragout/shared/debug.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared copying ragout/shared/config.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared copying ragout/shared/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend copying ragout/synteny_backend/synteny_backend.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend copying ragout/synteny_backend/sibelia.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend copying ragout/synteny_backend/maf.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend copying ragout/synteny_backend/hal.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend copying ragout/synteny_backend/cactus.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend copying ragout/synteny_backend/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick copying ragout/newick/tree.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick copying ragout/newick/tokens.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick copying ragout/newick/parser.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick copying ragout/newick/lexer.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick copying ragout/newick/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests copying ragout/tests/test_toy.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests copying ragout/tests/__init__.py -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests creating /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/data copying ragout/tests/data/mg1655_contigs.fasta -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/data copying ragout/tests/data/mg1655.coords -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/data copying ragout/tests/data/ecoli.rcp -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/data copying ragout/tests/data/DH1.fasta -> /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/data /build/reproducible-path/ragout-2.3/setup.py:35: DeprecationWarning: Use shutil.which instead of find_executable if not find_executable("make"): make[1]: Entering directory '/build/reproducible-path/ragout-2.3' make -C ragout/overlap/cpp_impl all make[2]: Entering directory '/build/reproducible-path/ragout-2.3/ragout/overlap/cpp_impl' g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG build_graph.cpp -o build_graph.o g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG fasta.cpp -o fasta.o g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG main.cpp -o main.o g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG overlap.cpp -o overlap.o g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG suffix_array.cpp -o suffix_array.o g++ -Wl,-z,relro -Wl,-z,now build_graph.o fasta.o main.o overlap.o suffix_array.o -o /build/reproducible-path/ragout-2.3/bin/ragout-overlap make[2]: Leaving directory '/build/reproducible-path/ragout-2.3/ragout/overlap/cpp_impl' make -C ragout/maf2synteny/cpp_impl all make[2]: Entering directory '/build/reproducible-path/ragout-2.3/ragout/maf2synteny/cpp_impl' g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG breakpoint_graph.cpp -o breakpoint_graph.o g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG compress_algorithms.cpp -o compress_algorithms.o g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG maf_tools.cpp -o maf_tools.o g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG main.cpp -o main.o g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/ragout-2.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++0x -Wall -O2 -DNDEBUG permutation.cpp -o permutation.o g++ -Wl,-z,relro -Wl,-z,now breakpoint_graph.o compress_algorithms.o maf_tools.o main.o permutation.o -o /build/reproducible-path/ragout-2.3/bin/ragout-maf2synteny make[2]: Leaving directory '/build/reproducible-path/ragout-2.3/ragout/maf2synteny/cpp_impl' make[1]: Leaving directory '/build/reproducible-path/ragout-2.3' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/ragout-2.3/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py /build/reproducible-path/ragout-2.3/setup.py:35: DeprecationWarning: Use shutil.which instead of find_executable if not find_executable("make"): make[1]: Entering directory '/build/reproducible-path/ragout-2.3' make -C ragout/overlap/cpp_impl all make[2]: Entering directory '/build/reproducible-path/ragout-2.3/ragout/overlap/cpp_impl' g++ -Wl,-z,relro -Wl,-z,now build_graph.o fasta.o main.o overlap.o suffix_array.o -o /build/reproducible-path/ragout-2.3/bin/ragout-overlap make[2]: Leaving directory '/build/reproducible-path/ragout-2.3/ragout/overlap/cpp_impl' make -C ragout/maf2synteny/cpp_impl all make[2]: Entering directory '/build/reproducible-path/ragout-2.3/ragout/maf2synteny/cpp_impl' g++ -Wl,-z,relro -Wl,-z,now breakpoint_graph.o compress_algorithms.o maf_tools.o main.o permutation.o -o /build/reproducible-path/ragout-2.3/bin/ragout-maf2synteny make[2]: Leaving directory '/build/reproducible-path/ragout-2.3/ragout/maf2synteny/cpp_impl' make[1]: Leaving directory '/build/reproducible-path/ragout-2.3' running install_lib creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/__pycache__ creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/__pycache__/test_toy.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/__pycache__ creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/data copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/data/DH1.fasta -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/data copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/data/ecoli.rcp -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/data copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/data/mg1655.coords -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/data copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/data/mg1655_contigs.fasta -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/data copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/tests/test_toy.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick/lexer.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick/parser.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick/tokens.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/newick/tree.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend/cactus.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend/hal.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend/maf.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend/sibelia.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/synteny_backend/synteny_backend.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared/config.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared/debug.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared/utils.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/shared/datatypes.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder/merge_iters.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder/output_generator.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/scaffolder/scaffolder.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/phylogeny creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/phylogeny/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/phylogeny/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/phylogeny/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/phylogeny/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/phylogeny copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/phylogeny/phylogeny.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/phylogeny copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/phylogeny/inferer.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/phylogeny creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers/phylogeny_parser.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers/fasta_parser.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/parsers/recipe_parser.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/overlap creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/overlap/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/overlap/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/overlap/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/overlap/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/overlap copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/overlap/overlap.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/overlap creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/maf2synteny creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/maf2synteny/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/maf2synteny/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/maf2synteny/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/maf2synteny/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/maf2synteny copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/maf2synteny/maf2synteny.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/maf2synteny creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph/inferer.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph/breakpoint_graph.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph/chimera_detector.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph/permutation.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/breakpoint_graph/repeat_resolver.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/assembly_graph creating /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/assembly_graph/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/assembly_graph/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/assembly_graph/__pycache__ copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/assembly_graph/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/assembly_graph copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/assembly_graph/assembly_refine.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/assembly_graph copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/__init__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/__version__.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout copying /build/reproducible-path/ragout-2.3/.pybuild/cpython3_3.12/build/ragout/main.py -> /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/tests/test_toy.py to test_toy.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick/lexer.py to lexer.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick/tokens.py to tokens.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/newick/tree.py to tree.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend/cactus.py to cactus.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend/hal.py to hal.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend/maf.py to maf.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend/sibelia.py to sibelia.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/synteny_backend/synteny_backend.py to synteny_backend.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared/config.py to config.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared/debug.py to debug.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/shared/datatypes.py to datatypes.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder/merge_iters.py to merge_iters.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder/output_generator.py to output_generator.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/scaffolder/scaffolder.py to scaffolder.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/phylogeny/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/phylogeny/phylogeny.py to phylogeny.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/phylogeny/inferer.py to inferer.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers/phylogeny_parser.py to phylogeny_parser.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers/fasta_parser.py to fasta_parser.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/parsers/recipe_parser.py to recipe_parser.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/overlap/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/overlap/overlap.py to overlap.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/maf2synteny/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/maf2synteny/maf2synteny.py to maf2synteny.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph/inferer.py to inferer.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph/breakpoint_graph.py to breakpoint_graph.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph/chimera_detector.py to chimera_detector.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph/permutation.py to permutation.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/breakpoint_graph/repeat_resolver.py to repeat_resolver.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/assembly_graph/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/assembly_graph/assembly_refine.py to assembly_refine.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/__version__.py to __version__.cpython-312.pyc byte-compiling /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout/main.py to main.cpython-312.pyc running install_egg_info running egg_info creating ragout.egg-info writing ragout.egg-info/PKG-INFO writing dependency_links to ragout.egg-info/dependency_links.txt writing entry points to ragout.egg-info/entry_points.txt writing top-level names to ragout.egg-info/top_level.txt writing manifest file 'ragout.egg-info/SOURCES.txt' reading manifest file 'ragout.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'ragout.egg-info/SOURCES.txt' Copying ragout.egg-info to /build/reproducible-path/ragout-2.3/debian/tmp/usr/lib/python3.12/dist-packages/ragout-2.3.egg-info Skipping SOURCES.txt running install_scripts Installing ragout script to /build/reproducible-path/ragout-2.3/debian/tmp/usr/bin Installing C++ binaries debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/ragout-2.3' dh_install find debian -name LICENSE -delete make[1]: Leaving directory '/build/reproducible-path/ragout-2.3' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:113: replacing shebang in debian/ragout/usr/bin/ragout dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package ragout-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package ragout-examples: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'ragout-examples' in '../ragout-examples_2.3-5_all.deb'. dpkg-deb: building package 'ragout' in '../ragout_2.3-5_arm64.deb'. dpkg-deb: building package 'ragout-dbgsym' in '../ragout-dbgsym_2.3-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ragout_2.3-5_arm64.buildinfo dpkg-genchanges --build=binary -O../ragout_2.3-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/21580/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/21580/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/21580 and its subdirectories I: Current time: Tue Dec 23 19:55:40 +14 2025 I: pbuilder-time-stamp: 1766469340