I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 4 07:44:47 +14 2024 I: pbuilder-time-stamp: 1733247887 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-cran-rstanarm_2.32.1-2.dsc] I: copying [./r-cran-rstanarm_2.32.1.orig.tar.gz] I: copying [./r-cran-rstanarm_2.32.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Apr 11 06:00:41 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-rstanarm_2.32.1-2.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-rstanarm in r-cran-rstanarm-2.32.1 dpkg-source: info: unpacking r-cran-rstanarm_2.32.1.orig.tar.gz dpkg-source: info: unpacking r-cran-rstanarm_2.32.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_tests.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1526306/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 3 17:44 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1526306/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1526306/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=664a7b4982524037b77b8b4633cabce8 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1526306 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.glMWkn7F/pbuilderrc_7lUv --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.glMWkn7F/b2 --logfile b2/build.log r-cran-rstanarm_2.32.1-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1526306/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-rcpp, r-cran-bayesplot, r-cran-ggplot2, r-cran-lme4, r-cran-loo, r-cran-matrix, r-cran-nlme, r-cran-posterior, r-cran-rstan (>= 2.32.0), r-cran-rstantools, r-cran-shinystan, r-cran-survival, r-cran-rcppparallel, r-cran-stanheaders (>= 2.32.0), r-cran-bh, r-cran-rcppeigen, r-cran-v8 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20086 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bayesplot; however: Package r-cran-bayesplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-lme4; however: Package r-cran-lme4 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-loo; however: Package r-cran-loo is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-cran-nlme; however: Package r-cran-nlme is not installed. pbuilder-satisfydepends-dummy depends on r-cran-posterior; however: Package r-cran-posterior is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rstan (>= 2.32.0); however: Package r-cran-rstan is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rstantools; however: Package r-cran-rstantools is not installed. pbuilder-satisfydepends-dummy depends on r-cran-shinystan; however: Package r-cran-shinystan is not installed. pbuilder-satisfydepends-dummy depends on r-cran-survival; however: Package r-cran-survival is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcppparallel; however: Package r-cran-rcppparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stanheaders (>= 2.32.0); however: Package r-cran-stanheaders is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bh; however: Package r-cran-bh is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcppeigen; however: Package r-cran-rcppeigen is not installed. pbuilder-satisfydepends-dummy depends on r-cran-v8; however: Package r-cran-v8 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libamd3{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libcares2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcolamd3{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libglpk40{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libhwloc15{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-datatables-extensions{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libltdl7{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnlopt0{a} libnode115{a} libnuma1{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsuitesparseconfig7{a} libswitch-perl{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} littler{a} m4{a} man-db{a} node-acorn{a} node-balanced-match{a} node-bootstrap-sass{a} node-brace-expansion{a} node-cjs-module-lexer{a} node-html5shiv{a} node-minimatch{a} node-normalize.css{a} node-undici{a} node-xtend{a} nodejs{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-abind{a} r-cran-backports{a} r-cran-base64enc{a} r-cran-bayesplot{a} r-cran-bh{a} r-cran-boot{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-callr{a} r-cran-checkmate{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-colourpicker{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-curl{a} r-cran-desc{a} r-cran-digest{a} r-cran-distributional{a} r-cran-dplyr{a} r-cran-dt{a} r-cran-dygraphs{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-fs{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-ggridges{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-gtools{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-igraph{a} r-cran-inline{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-lme4{a} r-cran-loo{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-miniui{a} r-cran-minqa{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nloptr{a} r-cran-numderiv{a} r-cran-pillar{a} r-cran-pkgbuild{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-posterior{a} r-cran-processx{a} r-cran-promises{a} r-cran-ps{a} r-cran-quickjsr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-rcppparallel{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rstan{a} r-cran-rstantools{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-shinyjs{a} r-cran-shinystan{a} r-cran-shinythemes{a} r-cran-sourcetools{a} r-cran-stanheaders{a} r-cran-statmod{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-tensora{a} r-cran-threejs{a} r-cran-tibble{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-v8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-xts{a} r-cran-yaml{a} r-cran-zoo{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc chromium cme curl devscripts dillo edbrowse elinks epiphany-browser falkon firefox firefox-esr git-buildpackage konqueror krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libhwloc-plugins libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl links links2 luakit lynx morph-browser netrik netsurf-fb netsurf-gtk node-highlight.js node-jquery nodejs-doc privacybrowser publicsuffix qutebrowser r-bioc-graph r-cran-actuar r-cran-ape r-cran-bench r-cran-bit64 r-cran-brio r-cran-brms r-cran-broom r-cran-cairo r-cran-caret r-cran-chron r-cran-coda r-cran-codetools r-cran-covr r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-devtools r-cran-dichromat r-cran-doparallel r-cran-downlit r-cran-e1071 r-cran-fastmatch r-cran-forcats r-cran-foreach r-cran-formatr r-cran-formattable r-cran-future r-cran-gbm r-cran-ggfortify r-cran-gh r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-httr r-cran-iterators r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-microbenchmark r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-patchwork r-cran-pingr r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-profvis r-cran-progress r-cran-purrr r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-ragg r-cran-randomforest r-cran-rcurl r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmysql r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstanarm r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-sf r-cran-spdep r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyr r-cran-tidyverse r-cran-tikzdevice r-cran-timedate r-cran-timeseries r-cran-tinytest r-cran-tseries r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webfakes r-cran-webshot r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info sugar-browse-activity surf vimb w3m wget x11-utils x11-xserver-utils xdg-user-dirs xemacs21-mule xemacs21-mule-canna-wnn xemacs21-nomule 0 packages upgraded, 358 newly installed, 0 to remove and 0 not upgraded. Need to get 261 MB of archives. After unpacking 1023 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-4 [256 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 zip arm64 3.0-14+b1 [227 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libpaper1 arm64 1.1.29+b2 [13.0 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 1.1.29+b2 [9128 B] Get: 40 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2~rc1-1 [23.5 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-9 [361 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libgfortran-14-dev arm64 14.2.0-9 [427 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-9 [9793 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 gfortran-14 arm64 14.2.0-9 [12.8 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 111 http://deb.debian.org/debian unstable/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 112 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.0-4 [106 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.0-4 [3709 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libncurses-dev arm64 6.5-2+b1 [338 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.44-4 [230 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libpcre2-32-0 arm64 10.44-4 [220 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libpcre2-posix3 arm64 10.44-4 [60.4 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libpcre2-dev arm64 10.44-4 [704 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libxmuu1 arm64 2:1.1.3-3+b3 [22.0 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3+b1 [192 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 137 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian unstable/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian unstable/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian unstable/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 javascript-common all 11+nmu1 [6260 B] Get: 190 http://deb.debian.org/debian unstable/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-2 [23.7 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libamd3 arm64 1:7.8.3+dfsg-2 [38.1 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-3.2+b2 [10.6 MB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 194 http://deb.debian.org/debian unstable/main arm64 libcares2 arm64 1.34.2-1 [87.4 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-2 [31.5 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.4.7-8 [392 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 libglpk40 arm64 5.0-1+b2 [346 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 libhwloc15 arm64 2.11.2-1 [141 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 libjs-d3 all 3.5.17-4 [132 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 210 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 liblua5.4-0 arm64 5.4.7-1+b1 [134 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 libnlopt0 arm64 2.7.1-6+b1 [158 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 node-xtend all 4.0.2-3 [3932 B] Get: 222 http://deb.debian.org/debian unstable/main arm64 nodejs arm64 20.18.1+dfsg-1 [347 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 node-acorn all 8.8.1+ds+~cs25.17.7-2 [128 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 node-cjs-module-lexer all 1.2.3+dfsg-1 [30.6 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 node-balanced-match all 2.0.0-1 [4872 B] Get: 226 http://deb.debian.org/debian unstable/main arm64 node-brace-expansion all 2.0.1+~1.1.0-1 [7912 B] Get: 227 http://deb.debian.org/debian unstable/main arm64 node-minimatch all 9.0.3-5 [76.7 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 node-undici all 5.28.4+dfsg1+~cs23.12.11-2 [314 kB] Get: 229 http://deb.debian.org/debian unstable/main arm64 libnode115 arm64 20.18.1+dfsg-1 [10.9 MB] Get: 230 http://deb.debian.org/debian unstable/main arm64 libnuma1 arm64 2.0.18-1+b1 [21.8 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 libtbbmalloc2 arm64 2021.12.0-1 [35.2 kB] Get: 232 http://deb.debian.org/debian unstable/main arm64 libtbbbind-2-5 arm64 2021.12.0-1 [14.1 kB] Get: 233 http://deb.debian.org/debian unstable/main arm64 libtbb12 arm64 2021.12.0-1 [63.5 kB] Get: 234 http://deb.debian.org/debian unstable/main arm64 libtbb-dev arm64 2021.12.0-1 [193 kB] Get: 235 http://deb.debian.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1+b2 [49.3 kB] Get: 236 http://deb.debian.org/debian unstable/main arm64 r-cran-littler arm64 0.3.20-1+b1 [103 kB] Get: 237 http://deb.debian.org/debian unstable/main arm64 littler all 0.3.20-1 [16.0 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 239 http://deb.debian.org/debian unstable/main arm64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 240 http://deb.debian.org/debian unstable/main arm64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 241 http://deb.debian.org/debian unstable/main arm64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 242 http://deb.debian.org/debian unstable/main arm64 pandoc arm64 3.1.11.1+ds-2 [26.2 MB] Get: 243 http://deb.debian.org/debian unstable/main arm64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 244 http://deb.debian.org/debian unstable/main arm64 r-cran-backports arm64 1.5.0-2+b1 [122 kB] Get: 245 http://deb.debian.org/debian unstable/main arm64 r-cran-base64enc arm64 0.1-3-3+b1 [28.6 kB] Get: 246 http://deb.debian.org/debian unstable/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB] Get: 247 http://deb.debian.org/debian unstable/main arm64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 248 http://deb.debian.org/debian unstable/main arm64 r-cran-glue arm64 1.7.0-1+b1 [159 kB] Get: 249 http://deb.debian.org/debian unstable/main arm64 r-cran-rlang arm64 1.1.4-1+b1 [1708 kB] Get: 250 http://deb.debian.org/debian unstable/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 251 http://deb.debian.org/debian unstable/main arm64 r-cran-magrittr arm64 2.0.3-1+b1 [203 kB] Get: 252 http://deb.debian.org/debian unstable/main arm64 r-cran-fansi arm64 1.0.5-1+b1 [626 kB] Get: 253 http://deb.debian.org/debian unstable/main arm64 r-cran-utf8 arm64 1.2.4-1+b1 [133 kB] Get: 254 http://deb.debian.org/debian unstable/main arm64 r-cran-vctrs arm64 0.6.5-1+b1 [1378 kB] Get: 255 http://deb.debian.org/debian unstable/main arm64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 256 http://deb.debian.org/debian unstable/main arm64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 257 http://deb.debian.org/debian unstable/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 258 http://deb.debian.org/debian unstable/main arm64 r-cran-tibble arm64 3.2.1+dfsg-2+b1 [425 kB] Get: 259 http://deb.debian.org/debian unstable/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 260 http://deb.debian.org/debian unstable/main arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [223 kB] Get: 261 http://deb.debian.org/debian unstable/main arm64 r-cran-dplyr arm64 1.1.4-2 [1542 kB] Get: 262 http://deb.debian.org/debian unstable/main arm64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Get: 263 http://deb.debian.org/debian unstable/main arm64 r-cran-isoband arm64 0.2.7-1+b1 [1614 kB] Get: 264 http://deb.debian.org/debian unstable/main arm64 r-cran-mass arm64 7.3-61-1+b1 [1112 kB] Get: 265 http://deb.debian.org/debian unstable/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB] Get: 266 http://deb.debian.org/debian unstable/main arm64 r-cran-nlme arm64 3.1.166-1 [2326 kB] Get: 267 http://deb.debian.org/debian unstable/main arm64 r-cran-matrix arm64 1.7-1-1 [4023 kB] Get: 268 http://deb.debian.org/debian unstable/main arm64 r-cran-mgcv arm64 1.9-1-1+b1 [3218 kB] Get: 269 http://deb.debian.org/debian unstable/main arm64 r-cran-farver arm64 2.1.2-1+b1 [1397 kB] Get: 270 http://deb.debian.org/debian unstable/main arm64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 271 http://deb.debian.org/debian unstable/main arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1713 kB] Get: 272 http://deb.debian.org/debian unstable/main arm64 r-cran-munsell all 0.5.1-1 [237 kB] Get: 273 http://deb.debian.org/debian unstable/main arm64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 274 http://deb.debian.org/debian unstable/main arm64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 275 http://deb.debian.org/debian unstable/main arm64 r-cran-scales all 1.3.0-1 [677 kB] Get: 276 http://deb.debian.org/debian unstable/main arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get: 277 http://deb.debian.org/debian unstable/main arm64 r-cran-ggridges all 0.5.6-1 [2204 kB] Get: 278 http://deb.debian.org/debian unstable/main arm64 r-cran-checkmate arm64 2.3.2-1 [703 kB] Get: 279 http://deb.debian.org/debian unstable/main arm64 r-cran-tensora arm64 0.36.2.1-1+b1 [229 kB] Get: 280 http://deb.debian.org/debian unstable/main arm64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get: 281 http://deb.debian.org/debian unstable/main arm64 r-cran-distributional all 0.4.0-1 [420 kB] Get: 282 http://deb.debian.org/debian unstable/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Get: 283 http://deb.debian.org/debian unstable/main arm64 r-cran-posterior all 1.6.0+dfsg-1 [931 kB] Get: 284 http://deb.debian.org/debian unstable/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 285 http://deb.debian.org/debian unstable/main arm64 r-cran-rcpp arm64 1.0.13-1-1 [2057 kB] Get: 286 http://deb.debian.org/debian unstable/main arm64 r-cran-plyr arm64 1.8.9-1+b1 [791 kB] Get: 287 http://deb.debian.org/debian unstable/main arm64 r-cran-stringi arm64 1.8.4-1 [872 kB] Get: 288 http://deb.debian.org/debian unstable/main arm64 r-cran-stringr all 1.5.1-1 [296 kB] Get: 289 http://deb.debian.org/debian unstable/main arm64 r-cran-reshape2 arm64 1.4.4-2+b1 [115 kB] Get: 290 http://deb.debian.org/debian unstable/main arm64 r-cran-bayesplot all 1.11.1-1 [5279 kB] Get: 291 http://deb.debian.org/debian unstable/main arm64 r-cran-bh all 1.84.0-1 [5912 B] Get: 292 http://deb.debian.org/debian unstable/main arm64 r-cran-boot all 1.3-31-1 [639 kB] Get: 293 http://deb.debian.org/debian unstable/main arm64 r-cran-fastmap arm64 1.2.0-1 [68.8 kB] Get: 294 http://deb.debian.org/debian unstable/main arm64 r-cran-cachem arm64 1.1.0-1 [74.0 kB] Get: 295 http://deb.debian.org/debian unstable/main arm64 r-cran-digest arm64 0.6.37-1 [204 kB] Get: 296 http://deb.debian.org/debian unstable/main arm64 r-cran-htmltools arm64 0.5.8.1-1+b1 [378 kB] Get: 297 http://deb.debian.org/debian unstable/main arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 298 http://deb.debian.org/debian unstable/main arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [443 kB] Get: 299 http://deb.debian.org/debian unstable/main arm64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 300 http://deb.debian.org/debian unstable/main arm64 r-cran-mime arm64 0.12-2+b1 [36.1 kB] Get: 301 http://deb.debian.org/debian unstable/main arm64 r-cran-fs arm64 1.6.4+dfsg-1+b1 [245 kB] Get: 302 http://deb.debian.org/debian unstable/main arm64 r-cran-rappdirs arm64 0.3.3-1+b1 [49.3 kB] Get: 303 http://deb.debian.org/debian unstable/main arm64 r-cran-sass arm64 0.4.9+dfsg-1+b1 [878 kB] Get: 304 http://deb.debian.org/debian unstable/main arm64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get: 305 http://deb.debian.org/debian unstable/main arm64 r-cran-ps arm64 1.8.0-1 [391 kB] Get: 306 http://deb.debian.org/debian unstable/main arm64 r-cran-processx arm64 3.8.4-1+b1 [351 kB] Get: 307 http://deb.debian.org/debian unstable/main arm64 r-cran-callr all 3.7.6-1 [460 kB] Get: 308 http://deb.debian.org/debian unstable/main arm64 r-cran-evaluate all 1.0.0-1 [112 kB] Get: 309 http://deb.debian.org/debian unstable/main arm64 r-cran-xfun arm64 0.49+dfsg-1 [546 kB] Get: 310 http://deb.debian.org/debian unstable/main arm64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get: 311 http://deb.debian.org/debian unstable/main arm64 r-cran-yaml arm64 2.3.10-1 [103 kB] Get: 312 http://deb.debian.org/debian unstable/main arm64 r-cran-knitr all 1.49+dfsg-1 [861 kB] Get: 313 http://deb.debian.org/debian unstable/main arm64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get: 314 http://deb.debian.org/debian unstable/main arm64 r-cran-tinytex all 0.53-1 [146 kB] Get: 315 http://deb.debian.org/debian unstable/main arm64 r-cran-later arm64 1.3.2+dfsg-1+b1 [113 kB] Get: 316 http://deb.debian.org/debian unstable/main arm64 r-cran-promises arm64 1.3.0+dfsg-1+b1 [283 kB] Get: 317 http://deb.debian.org/debian unstable/main arm64 r-cran-httpuv arm64 1.6.15+dfsg-1+b1 [461 kB] Get: 318 http://deb.debian.org/debian unstable/main arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 319 http://deb.debian.org/debian unstable/main arm64 r-cran-sourcetools arm64 0.1.7-1-1+b1 [45.0 kB] Get: 320 http://deb.debian.org/debian unstable/main arm64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 321 http://deb.debian.org/debian unstable/main arm64 r-cran-commonmark arm64 1.9.2-1 [108 kB] Get: 322 http://deb.debian.org/debian unstable/main arm64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 323 http://deb.debian.org/debian unstable/main arm64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 324 http://deb.debian.org/debian unstable/main arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] Get: 325 http://deb.debian.org/debian unstable/main arm64 r-cran-miniui all 0.1.1.1-3 [35.9 kB] Get: 326 http://deb.debian.org/debian unstable/main arm64 r-cran-shinyjs all 2.1.0-1 [1009 kB] Get: 327 http://deb.debian.org/debian unstable/main arm64 r-cran-colourpicker all 1.3.0+dfsg-1 [1212 kB] Get: 328 http://deb.debian.org/debian unstable/main arm64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 329 http://deb.debian.org/debian unstable/main arm64 r-cran-lazyeval arm64 0.2.2-1+b2 [145 kB] Get: 330 http://deb.debian.org/debian unstable/main arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [175 kB] Get: 331 http://deb.debian.org/debian unstable/main arm64 r-cran-curl arm64 5.2.3+dfsg-1 [177 kB] Get: 332 http://deb.debian.org/debian unstable/main arm64 r-cran-desc all 1.4.3-1 [351 kB] Get: 333 http://deb.debian.org/debian unstable/main arm64 r-cran-dt all 0.33+dfsg-1 [248 kB] Get: 334 http://deb.debian.org/debian unstable/main arm64 r-cran-zoo arm64 1.8-12-2+b1 [995 kB] Get: 335 http://deb.debian.org/debian unstable/main arm64 r-cran-xts arm64 0.14.0-1 [754 kB] Get: 336 http://deb.debian.org/debian unstable/main arm64 r-cran-dygraphs all 1.1.1.6+dfsg-4 [317 kB] Get: 337 http://deb.debian.org/debian unstable/main arm64 r-cran-gridextra all 2.3-3 [1024 kB] Get: 338 http://deb.debian.org/debian unstable/main arm64 r-cran-gtools arm64 3.9.5-1+b1 [366 kB] Get: 339 http://deb.debian.org/debian unstable/main arm64 r-cran-igraph arm64 2.0.3-1+b1 [4979 kB] Get: 340 http://deb.debian.org/debian unstable/main arm64 r-cran-inline all 0.3.20-1 [132 kB] Get: 341 http://deb.debian.org/debian unstable/main arm64 r-cran-minqa arm64 1.2.8-1 [106 kB] Get: 342 http://deb.debian.org/debian unstable/main arm64 r-cran-nloptr arm64 2.1.1-1+b1 [256 kB] Get: 343 http://deb.debian.org/debian unstable/main arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1396 kB] Get: 344 http://deb.debian.org/debian unstable/main arm64 r-cran-statmod arm64 1.5.0-1+b1 [301 kB] Get: 345 http://deb.debian.org/debian unstable/main arm64 r-cran-lme4 arm64 1.1-35.5-1+b1 [4093 kB] Get: 346 http://deb.debian.org/debian unstable/main arm64 r-cran-loo all 2.8.0-1 [3071 kB] Get: 347 http://deb.debian.org/debian unstable/main arm64 r-cran-markdown all 1.12+dfsg-2 [179 kB] Get: 348 http://deb.debian.org/debian unstable/main arm64 r-cran-pkgbuild all 1.4.4-1 [213 kB] Get: 349 http://deb.debian.org/debian unstable/main arm64 r-cran-quickjsr arm64 1.4.0-1 [597 kB] Get: 350 http://deb.debian.org/debian unstable/main arm64 r-cran-rcppparallel arm64 5.1.7+dfsg-5+b2 [307 kB] Get: 351 http://deb.debian.org/debian unstable/main arm64 r-cran-stanheaders arm64 2.32.10-1 [1313 kB] Get: 352 http://deb.debian.org/debian unstable/main arm64 r-cran-rstan arm64 2.32.5-2+b1 [1976 kB] Get: 353 http://deb.debian.org/debian unstable/main arm64 r-cran-rstantools all 2.4.0-1 [174 kB] Get: 354 http://deb.debian.org/debian unstable/main arm64 r-cran-shinythemes all 1.2.0+dfsg-1 [428 kB] Get: 355 http://deb.debian.org/debian unstable/main arm64 r-cran-threejs all 0.3.3+dfsg-2 [881 kB] Get: 356 http://deb.debian.org/debian unstable/main arm64 r-cran-shinystan all 2.6.0-1 [2563 kB] Get: 357 http://deb.debian.org/debian unstable/main arm64 r-cran-survival arm64 3.7-0-1+b1 [6292 kB] Get: 358 http://deb.debian.org/debian unstable/main arm64 r-cran-v8 arm64 6.0.0+dfsg-1 [103 kB] Fetched 261 MB in 2s (108 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20086 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. 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Selecting previously unselected package libpango-1.0-0:arm64. Preparing to unpack .../086-libpango-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../087-libpangoft2-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../088-libpangocairo-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../089-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../091-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../098-libxft2_2.3.6-1+b2_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b2_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../101-libtk8.6_8.6.15-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.15-1) ... 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Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libjs-sifter.js (0.6.0+dfsg-3) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up unzip (6.0-28+b1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.32-1) ... Setting up node-html5shiv (3.7.3+dfsg-5) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libnlopt0:arm64 (2.7.1-6+b1) ... Setting up node-cjs-module-lexer (1.2.3+dfsg-1) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.2~rc1-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjs-modernizr (3.13.0-0.1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libpcre2-16-0:arm64 (10.44-4) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libjs-es5-shim (4.6.7-2) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 3 17:46:32 UTC 2024. Universal Time is now: Tue Dec 3 17:46:32 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14+b1) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.44-4) ... Setting up libglib2.0-0t64:arm64 (2.82.2-3) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up node-balanced-match (2.0.0-1) ... Setting up node-brace-expansion (2.0.1+~1.1.0-1) ... Setting up libncurses6:arm64 (6.5-2+b1) ... Setting up libfribidi0:arm64 (1.0.15-1) ... 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Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... Setting up node-minimatch (9.0.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up pandoc-data (3.1.11.1-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up node-xtend (4.0.2-3) ... Setting up openssl (3.3.2-2) ... Setting up libdeflate-dev:arm64 (1.22-1) ... Setting up node-normalize.css (8.0.1-5) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:arm64 (72.1-5+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:arm64 (2:1.1.3-3+b3) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Setting up libblas-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-9) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libamd3:arm64 (1:7.8.3+dfsg-2) ... Setting up libpcre2-dev:arm64 (10.44-4) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up libcolamd3:arm64 (1:7.8.3+dfsg-2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:arm64 (1.6.44-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up libtbbbind-2-5:arm64 (2021.12.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (3.1.11.1+ds-2) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libglpk40:arm64 (5.0-1+b2) ... Setting up liblapack-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1+b1) ... Setting up groff-base (1.23.0-5) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-9) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-9) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:arm64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1526306/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1526306/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-cran-rstanarm-2.32.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-cran-rstanarm_2.32.1-2_source.changes dpkg-buildpackage: info: source package r-cran-rstanarm dpkg-buildpackage: info: source version 2.32.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/r-cran-rstanarm-2.32.1' find src -name "*.hpp" -delete dh_clean make[1]: Leaving directory '/build/reproducible-path/r-cran-rstanarm-2.32.1' debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-rstanarm/ -O--buildsystem=R I: R packages needed for DEP8: data.table (>= 1.10.0), digest, gridextra, hsaur3, knitr (>= 1.15.1), mass, mgcv (>= 1.8-13), rmarkdown, roxygen2, testthat (>= 1.0.2), gamm4, shiny, v8, xvfb, xauth, xfonts-base, xterm I: R Package: rstanarm Version: 2.32.1 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 11 Apr 2024 07:24:45 +0200 mkdir -p /build/reproducible-path/r-cran-rstanarm-2.32.1/debian/r-cran-rstanarm/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-cran-rstanarm-2.32.1/debian/r-cran-rstanarm/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 11 Apr 2024 07:24:45 +0200'" * installing *source* package 'rstanarm' ... file 'tests/testthat/test_stan_functions.R' has the wrong MD5 checksum ** using staged installation ** libs using C++ compiler: 'g++ (Debian 14.2.0-9) 14.2.0' using C++17 make[1]: Entering directory '/build/reproducible-path/r-cran-rstanarm-2.32.1/src' "/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) Wrote C++ file "stan_files/bernoulli.cc" g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I/usr/include -DTBB_INTERFACE_NEW -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/bernoulli.cc -o stan_files/bernoulli.o In file included from /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:11, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:18, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:129, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:43, from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:4, from stan_files/bernoulli.hpp:18, from stan_files/bernoulli.cc:3: /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> boost::math::detail::hypergeometric_pFq_checked_series_impl(const Seq&, const Seq&, const Real&, const Policy&, const Terminal&, long long int&) [with Seq = std::vector; Real = long double; Policy = boost::math::policies::policy; Terminal = iteration_terminator]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:107: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy; typename tools::promote_args::type = double; typename Seq::value_type = double]' 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:72:35: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*) [with Seq = std::vector; Real = double; typename tools::promote_args::type = double; typename Seq::value_type = double]' 72 | return hypergeometric_pFq(aj, bj, z, p_abs_error, boost::math::policies::policy<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:55:41: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 55 | return boost::math::hypergeometric_pFq( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | std::vector(a_ref.data(), a_ref.data() + a_ref.size()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | std::vector(b_ref.data(), b_ref.data() + b_ref.size()), z); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp:122:28: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 122 | std::pair hypergeometric_pFq_checked_series_impl(const Seq& aj, const Seq& bj, const Real& z, const Policy& pol, const Terminal& termination, long long& log_scale) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:31: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 217 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double]' 252 | return continued_fraction_a(g, factor, max_iter); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]' 314 | return 1 / (z - a + 1 + boost::math::tools::continued_fraction_a(f, eps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1176 | result += log(upper_gamma_fraction(a, x, policies::get_epsilon())); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 2130 | detail::gamma_incomplete_imp(static_cast(a), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2131 | static_cast(z), true, false, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2132 | forwarding_policy(), static_cast(nullptr)), "gamma_p<%1%>(%1%, %1%)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here 76 | return boost::math::gamma_p(z, a, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:260: /usr/include/boost/math/special_functions/owens_t.hpp: In instantiation of 'std::pair<_FIter, _FIter> boost::math::detail::owens_t_T1_accelerated(T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy]': /usr/include/boost/math/special_functions/owens_t.hpp:874:46: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&, const std::integral_constant&) [with RealType = long double; Policy = boost::math::policies::policy]' 874 | p1 = owens_t_T1_accelerated(h, a, forwarding_policy()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:979:36: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 979 | return owens_t_dispatch(h, a, ah, pol, tag_type()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1000:38: required from 'RealType boost::math::detail::owens_t(RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 1000 | val = owens_t_dispatch(h, fabs_a, fabs_ah, pol); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1072:86: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2, const Policy&) [with T1 = double; T2 = double; Policy = policies::policy; tools::promote_args_t = double]' 1072 | return policies::checked_narrowing_cast(detail::owens_t(static_cast(h), static_cast(a), pol), "boost::math::owens_t<%1%>(%1%,%1%)"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1078:24: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2) [with T1 = double; T2 = double; tools::promote_args_t = double]' 1078 | return owens_t(h, a, policies::policy<>()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:58:72: required from here 58 | inline double owens_t(double h, double a) { return boost::math::owens_t(h, a); } | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:543:26: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 543 | std::pair owens_t_T1_accelerated(T h, T a, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/binomial.hpp:15, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 123 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double]' 156 | return continued_fraction_b(g, factor, max_terms); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 732 | T fract = boost::math::tools::continued_fraction_b(f, boost::math::policies::get_epsilon()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1377 | fract = ibeta_fraction2(a, b, x, y, pol, normalised, p_derivative); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1414 | return ibeta_imp(a, b, x, pol, inv, normalised, static_cast(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 1570 | return policies::checked_narrowing_cast(detail::ibeta_imp(static_cast(a), static_cast(b), static_cast(x), forwarding_policy(), false, true), "boost::math::ibeta<%1%>(%1%,%1%,%1%)"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:29:28: required from here 29 | return boost::math::ibeta(a, b, x, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 695 | result_type operator()() | ^~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp: In function 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:44: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:18: /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 217 | value_type v = g(); | ^ /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 "/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/binomial.stan code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) Wrote C++ file "stan_files/binomial.cc" g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I/usr/include -DTBB_INTERFACE_NEW -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/binomial.cc -o stan_files/binomial.o In file included from /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:11, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:18, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:129, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:43, from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:4, from stan_files/binomial.hpp:18, from stan_files/binomial.cc:3: /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> boost::math::detail::hypergeometric_pFq_checked_series_impl(const Seq&, const Seq&, const Real&, const Policy&, const Terminal&, long long int&) [with Seq = std::vector; Real = long double; Policy = boost::math::policies::policy; Terminal = iteration_terminator]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:107: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy; typename tools::promote_args::type = double; typename Seq::value_type = double]' 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:72:35: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*) [with Seq = std::vector; Real = double; typename tools::promote_args::type = double; typename Seq::value_type = double]' 72 | return hypergeometric_pFq(aj, bj, z, p_abs_error, boost::math::policies::policy<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:55:41: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 55 | return boost::math::hypergeometric_pFq( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | std::vector(a_ref.data(), a_ref.data() + a_ref.size()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | std::vector(b_ref.data(), b_ref.data() + b_ref.size()), z); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp:122:28: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 122 | std::pair hypergeometric_pFq_checked_series_impl(const Seq& aj, const Seq& bj, const Real& z, const Policy& pol, const Terminal& termination, long long& log_scale) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:31: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 217 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double]' 252 | return continued_fraction_a(g, factor, max_iter); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]' 314 | return 1 / (z - a + 1 + boost::math::tools::continued_fraction_a(f, eps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1176 | result += log(upper_gamma_fraction(a, x, policies::get_epsilon())); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 2130 | detail::gamma_incomplete_imp(static_cast(a), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2131 | static_cast(z), true, false, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2132 | forwarding_policy(), static_cast(nullptr)), "gamma_p<%1%>(%1%, %1%)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here 76 | return boost::math::gamma_p(z, a, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:260: /usr/include/boost/math/special_functions/owens_t.hpp: In instantiation of 'std::pair<_FIter, _FIter> boost::math::detail::owens_t_T1_accelerated(T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy]': /usr/include/boost/math/special_functions/owens_t.hpp:874:46: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&, const std::integral_constant&) [with RealType = long double; Policy = boost::math::policies::policy]' 874 | p1 = owens_t_T1_accelerated(h, a, forwarding_policy()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:979:36: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 979 | return owens_t_dispatch(h, a, ah, pol, tag_type()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1000:38: required from 'RealType boost::math::detail::owens_t(RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 1000 | val = owens_t_dispatch(h, fabs_a, fabs_ah, pol); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1072:86: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2, const Policy&) [with T1 = double; T2 = double; Policy = policies::policy; tools::promote_args_t = double]' 1072 | return policies::checked_narrowing_cast(detail::owens_t(static_cast(h), static_cast(a), pol), "boost::math::owens_t<%1%>(%1%,%1%)"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1078:24: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2) [with T1 = double; T2 = double; tools::promote_args_t = double]' 1078 | return owens_t(h, a, policies::policy<>()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:58:72: required from here 58 | inline double owens_t(double h, double a) { return boost::math::owens_t(h, a); } | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:543:26: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 543 | std::pair owens_t_T1_accelerated(T h, T a, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/binomial.hpp:15, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 123 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double]' 156 | return continued_fraction_b(g, factor, max_terms); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 732 | T fract = boost::math::tools::continued_fraction_b(f, boost::math::policies::get_epsilon()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1377 | fract = ibeta_fraction2(a, b, x, y, pol, normalised, p_derivative); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1414 | return ibeta_imp(a, b, x, pol, inv, normalised, static_cast(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 1570 | return policies::checked_narrowing_cast(detail::ibeta_imp(static_cast(a), static_cast(b), static_cast(x), forwarding_policy(), false, true), "boost::math::ibeta<%1%>(%1%,%1%,%1%)"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:29:28: required from here 29 | return boost::math::ibeta(a, b, x, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 695 | result_type operator()() | ^~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp: In function 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:44: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:18: /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 217 | value_type v = g(); | ^ /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 "/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/continuous.stan code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) Wrote C++ file "stan_files/continuous.cc" g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I/usr/include -DTBB_INTERFACE_NEW -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/continuous.cc -o stan_files/continuous.o In file included from /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:11, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:18, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:129, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:43, from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:4, from stan_files/continuous.hpp:18, from stan_files/continuous.cc:3: /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> boost::math::detail::hypergeometric_pFq_checked_series_impl(const Seq&, const Seq&, const Real&, const Policy&, const Terminal&, long long int&) [with Seq = std::vector; Real = long double; Policy = boost::math::policies::policy; Terminal = iteration_terminator]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:107: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy; typename tools::promote_args::type = double; typename Seq::value_type = double]' 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:72:35: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*) [with Seq = std::vector; Real = double; typename tools::promote_args::type = double; typename Seq::value_type = double]' 72 | return hypergeometric_pFq(aj, bj, z, p_abs_error, boost::math::policies::policy<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:55:41: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 55 | return boost::math::hypergeometric_pFq( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | std::vector(a_ref.data(), a_ref.data() + a_ref.size()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | std::vector(b_ref.data(), b_ref.data() + b_ref.size()), z); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp:122:28: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 122 | std::pair hypergeometric_pFq_checked_series_impl(const Seq& aj, const Seq& bj, const Real& z, const Policy& pol, const Terminal& termination, long long& log_scale) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:31: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 217 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double]' 252 | return continued_fraction_a(g, factor, max_iter); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]' 314 | return 1 / (z - a + 1 + boost::math::tools::continued_fraction_a(f, eps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1176 | result += log(upper_gamma_fraction(a, x, policies::get_epsilon())); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 2130 | detail::gamma_incomplete_imp(static_cast(a), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2131 | static_cast(z), true, false, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2132 | forwarding_policy(), static_cast(nullptr)), "gamma_p<%1%>(%1%, %1%)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here 76 | return boost::math::gamma_p(z, a, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:260: /usr/include/boost/math/special_functions/owens_t.hpp: In instantiation of 'std::pair<_FIter, _FIter> boost::math::detail::owens_t_T1_accelerated(T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy]': /usr/include/boost/math/special_functions/owens_t.hpp:874:46: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&, const std::integral_constant&) [with RealType = long double; Policy = boost::math::policies::policy]' 874 | p1 = owens_t_T1_accelerated(h, a, forwarding_policy()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:979:36: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 979 | return owens_t_dispatch(h, a, ah, pol, tag_type()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1000:38: required from 'RealType boost::math::detail::owens_t(RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 1000 | val = owens_t_dispatch(h, fabs_a, fabs_ah, pol); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1072:86: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2, const Policy&) [with T1 = double; T2 = double; Policy = policies::policy; tools::promote_args_t = double]' 1072 | return policies::checked_narrowing_cast(detail::owens_t(static_cast(h), static_cast(a), pol), "boost::math::owens_t<%1%>(%1%,%1%)"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1078:24: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2) [with T1 = double; T2 = double; tools::promote_args_t = double]' 1078 | return owens_t(h, a, policies::policy<>()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:58:72: required from here 58 | inline double owens_t(double h, double a) { return boost::math::owens_t(h, a); } | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:543:26: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 543 | std::pair owens_t_T1_accelerated(T h, T a, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/binomial.hpp:15, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 123 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double]' 156 | return continued_fraction_b(g, factor, max_terms); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 732 | T fract = boost::math::tools::continued_fraction_b(f, boost::math::policies::get_epsilon()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1377 | fract = ibeta_fraction2(a, b, x, y, pol, normalised, p_derivative); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1414 | return ibeta_imp(a, b, x, pol, inv, normalised, static_cast(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 1570 | return policies::checked_narrowing_cast(detail::ibeta_imp(static_cast(a), static_cast(b), static_cast(x), forwarding_policy(), false, true), "boost::math::ibeta<%1%>(%1%,%1%,%1%)"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:29:28: required from here 29 | return boost::math::ibeta(a, b, x, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 695 | result_type operator()() | ^~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp: In function 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:44: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:18: /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 217 | value_type v = g(); | ^ /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 "/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/count.stan code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) Wrote C++ file "stan_files/count.cc" g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I/usr/include -DTBB_INTERFACE_NEW -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/count.cc -o stan_files/count.o In file included from /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:11, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:18, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:129, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:43, from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:4, from stan_files/count.hpp:18, from stan_files/count.cc:3: /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> boost::math::detail::hypergeometric_pFq_checked_series_impl(const Seq&, const Seq&, const Real&, const Policy&, const Terminal&, long long int&) [with Seq = std::vector; Real = long double; Policy = boost::math::policies::policy; Terminal = iteration_terminator]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:107: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy; typename tools::promote_args::type = double; typename Seq::value_type = double]' 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:72:35: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*) [with Seq = std::vector; Real = double; typename tools::promote_args::type = double; typename Seq::value_type = double]' 72 | return hypergeometric_pFq(aj, bj, z, p_abs_error, boost::math::policies::policy<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:55:41: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 55 | return boost::math::hypergeometric_pFq( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | std::vector(a_ref.data(), a_ref.data() + a_ref.size()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | std::vector(b_ref.data(), b_ref.data() + b_ref.size()), z); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp:122:28: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 122 | std::pair hypergeometric_pFq_checked_series_impl(const Seq& aj, const Seq& bj, const Real& z, const Policy& pol, const Terminal& termination, long long& log_scale) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:31: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 217 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double]' 252 | return continued_fraction_a(g, factor, max_iter); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]' 314 | return 1 / (z - a + 1 + boost::math::tools::continued_fraction_a(f, eps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1176 | result += log(upper_gamma_fraction(a, x, policies::get_epsilon())); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 2130 | detail::gamma_incomplete_imp(static_cast(a), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2131 | static_cast(z), true, false, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2132 | forwarding_policy(), static_cast(nullptr)), "gamma_p<%1%>(%1%, %1%)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here 76 | return boost::math::gamma_p(z, a, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:260: /usr/include/boost/math/special_functions/owens_t.hpp: In instantiation of 'std::pair<_FIter, _FIter> boost::math::detail::owens_t_T1_accelerated(T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy]': /usr/include/boost/math/special_functions/owens_t.hpp:874:46: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&, const std::integral_constant&) [with RealType = long double; Policy = boost::math::policies::policy]' 874 | p1 = owens_t_T1_accelerated(h, a, forwarding_policy()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:979:36: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 979 | return owens_t_dispatch(h, a, ah, pol, tag_type()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1000:38: required from 'RealType boost::math::detail::owens_t(RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 1000 | val = owens_t_dispatch(h, fabs_a, fabs_ah, pol); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1072:86: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2, const Policy&) [with T1 = double; T2 = double; Policy = policies::policy; tools::promote_args_t = double]' 1072 | return policies::checked_narrowing_cast(detail::owens_t(static_cast(h), static_cast(a), pol), "boost::math::owens_t<%1%>(%1%,%1%)"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1078:24: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2) [with T1 = double; T2 = double; tools::promote_args_t = double]' 1078 | return owens_t(h, a, policies::policy<>()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:58:72: required from here 58 | inline double owens_t(double h, double a) { return boost::math::owens_t(h, a); } | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:543:26: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 543 | std::pair owens_t_T1_accelerated(T h, T a, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/binomial.hpp:15, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 123 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double]' 156 | return continued_fraction_b(g, factor, max_terms); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 732 | T fract = boost::math::tools::continued_fraction_b(f, boost::math::policies::get_epsilon()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1377 | fract = ibeta_fraction2(a, b, x, y, pol, normalised, p_derivative); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1414 | return ibeta_imp(a, b, x, pol, inv, normalised, static_cast(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 1570 | return policies::checked_narrowing_cast(detail::ibeta_imp(static_cast(a), static_cast(b), static_cast(x), forwarding_policy(), false, true), "boost::math::ibeta<%1%>(%1%,%1%,%1%)"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:29:28: required from here 29 | return boost::math::ibeta(a, b, x, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 695 | result_type operator()() | ^~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp: In function 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:44: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:18: /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 217 | value_type v = g(); | ^ /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 "/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/jm.stan code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) Wrote C++ file "stan_files/jm.cc" g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I/usr/include -DTBB_INTERFACE_NEW -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/jm.cc -o stan_files/jm.o In file included from /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:11, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:18, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:129, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:43, from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:4, from stan_files/jm.hpp:18, from stan_files/jm.cc:3: /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> boost::math::detail::hypergeometric_pFq_checked_series_impl(const Seq&, const Seq&, const Real&, const Policy&, const Terminal&, long long int&) [with Seq = std::vector; Real = long double; Policy = boost::math::policies::policy; Terminal = iteration_terminator]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:107: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy; typename tools::promote_args::type = double; typename Seq::value_type = double]' 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:72:35: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*) [with Seq = std::vector; Real = double; typename tools::promote_args::type = double; typename Seq::value_type = double]' 72 | return hypergeometric_pFq(aj, bj, z, p_abs_error, boost::math::policies::policy<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:55:41: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 55 | return boost::math::hypergeometric_pFq( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | std::vector(a_ref.data(), a_ref.data() + a_ref.size()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | std::vector(b_ref.data(), b_ref.data() + b_ref.size()), z); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp:122:28: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 122 | std::pair hypergeometric_pFq_checked_series_impl(const Seq& aj, const Seq& bj, const Real& z, const Policy& pol, const Terminal& termination, long long& log_scale) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:31: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 217 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double]' 252 | return continued_fraction_a(g, factor, max_iter); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]' 314 | return 1 / (z - a + 1 + boost::math::tools::continued_fraction_a(f, eps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1176 | result += log(upper_gamma_fraction(a, x, policies::get_epsilon())); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 2130 | detail::gamma_incomplete_imp(static_cast(a), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2131 | static_cast(z), true, false, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2132 | forwarding_policy(), static_cast(nullptr)), "gamma_p<%1%>(%1%, %1%)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here 76 | return boost::math::gamma_p(z, a, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:260: /usr/include/boost/math/special_functions/owens_t.hpp: In instantiation of 'std::pair<_FIter, _FIter> boost::math::detail::owens_t_T1_accelerated(T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy]': /usr/include/boost/math/special_functions/owens_t.hpp:874:46: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&, const std::integral_constant&) [with RealType = long double; Policy = boost::math::policies::policy]' 874 | p1 = owens_t_T1_accelerated(h, a, forwarding_policy()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:979:36: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 979 | return owens_t_dispatch(h, a, ah, pol, tag_type()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1000:38: required from 'RealType boost::math::detail::owens_t(RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 1000 | val = owens_t_dispatch(h, fabs_a, fabs_ah, pol); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1072:86: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2, const Policy&) [with T1 = double; T2 = double; Policy = policies::policy; tools::promote_args_t = double]' 1072 | return policies::checked_narrowing_cast(detail::owens_t(static_cast(h), static_cast(a), pol), "boost::math::owens_t<%1%>(%1%,%1%)"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1078:24: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2) [with T1 = double; T2 = double; tools::promote_args_t = double]' 1078 | return owens_t(h, a, policies::policy<>()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:58:72: required from here 58 | inline double owens_t(double h, double a) { return boost::math::owens_t(h, a); } | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:543:26: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 543 | std::pair owens_t_T1_accelerated(T h, T a, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/binomial.hpp:15, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 123 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double]' 156 | return continued_fraction_b(g, factor, max_terms); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 732 | T fract = boost::math::tools::continued_fraction_b(f, boost::math::policies::get_epsilon()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1377 | fract = ibeta_fraction2(a, b, x, y, pol, normalised, p_derivative); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1414 | return ibeta_imp(a, b, x, pol, inv, normalised, static_cast(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 1570 | return policies::checked_narrowing_cast(detail::ibeta_imp(static_cast(a), static_cast(b), static_cast(x), forwarding_policy(), false, true), "boost::math::ibeta<%1%>(%1%,%1%,%1%)"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:29:28: required from here 29 | return boost::math::ibeta(a, b, x, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 695 | result_type operator()() | ^~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp: In function 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:44: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:18: /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 217 | value_type v = g(); | ^ /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 stan_files/jm.hpp: In constructor 'model_jm_namespace::model_jm::model_jm(stan::io::var_context&, unsigned int, std::ostream*)': stan_files/jm.hpp:6881: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 6881 | model_jm(stan::io::var_context& context__, unsigned int random_seed__ = 0, "/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lm.stan code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) Wrote C++ file "stan_files/lm.cc" g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I/usr/include -DTBB_INTERFACE_NEW -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/lm.cc -o stan_files/lm.o In file included from /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:11, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:18, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:129, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:43, from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:4, from stan_files/lm.hpp:18, from stan_files/lm.cc:3: /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> boost::math::detail::hypergeometric_pFq_checked_series_impl(const Seq&, const Seq&, const Real&, const Policy&, const Terminal&, long long int&) [with Seq = std::vector; Real = long double; Policy = boost::math::policies::policy; Terminal = iteration_terminator]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:107: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy; typename tools::promote_args::type = double; typename Seq::value_type = double]' 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:72:35: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*) [with Seq = std::vector; Real = double; typename tools::promote_args::type = double; typename Seq::value_type = double]' 72 | return hypergeometric_pFq(aj, bj, z, p_abs_error, boost::math::policies::policy<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:55:41: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 55 | return boost::math::hypergeometric_pFq( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | std::vector(a_ref.data(), a_ref.data() + a_ref.size()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | std::vector(b_ref.data(), b_ref.data() + b_ref.size()), z); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp:122:28: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 122 | std::pair hypergeometric_pFq_checked_series_impl(const Seq& aj, const Seq& bj, const Real& z, const Policy& pol, const Terminal& termination, long long& log_scale) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:31: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 217 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double]' 252 | return continued_fraction_a(g, factor, max_iter); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]' 314 | return 1 / (z - a + 1 + boost::math::tools::continued_fraction_a(f, eps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1176 | result += log(upper_gamma_fraction(a, x, policies::get_epsilon())); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 2130 | detail::gamma_incomplete_imp(static_cast(a), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2131 | static_cast(z), true, false, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2132 | forwarding_policy(), static_cast(nullptr)), "gamma_p<%1%>(%1%, %1%)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here 76 | return boost::math::gamma_p(z, a, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:260: /usr/include/boost/math/special_functions/owens_t.hpp: In instantiation of 'std::pair<_FIter, _FIter> boost::math::detail::owens_t_T1_accelerated(T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy]': /usr/include/boost/math/special_functions/owens_t.hpp:874:46: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&, const std::integral_constant&) [with RealType = long double; Policy = boost::math::policies::policy]' 874 | p1 = owens_t_T1_accelerated(h, a, forwarding_policy()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:979:36: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 979 | return owens_t_dispatch(h, a, ah, pol, tag_type()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1000:38: required from 'RealType boost::math::detail::owens_t(RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 1000 | val = owens_t_dispatch(h, fabs_a, fabs_ah, pol); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1072:86: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2, const Policy&) [with T1 = double; T2 = double; Policy = policies::policy; tools::promote_args_t = double]' 1072 | return policies::checked_narrowing_cast(detail::owens_t(static_cast(h), static_cast(a), pol), "boost::math::owens_t<%1%>(%1%,%1%)"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1078:24: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2) [with T1 = double; T2 = double; tools::promote_args_t = double]' 1078 | return owens_t(h, a, policies::policy<>()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:58:72: required from here 58 | inline double owens_t(double h, double a) { return boost::math::owens_t(h, a); } | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:543:26: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 543 | std::pair owens_t_T1_accelerated(T h, T a, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/binomial.hpp:15, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 123 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double]' 156 | return continued_fraction_b(g, factor, max_terms); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 732 | T fract = boost::math::tools::continued_fraction_b(f, boost::math::policies::get_epsilon()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1377 | fract = ibeta_fraction2(a, b, x, y, pol, normalised, p_derivative); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1414 | return ibeta_imp(a, b, x, pol, inv, normalised, static_cast(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 1570 | return policies::checked_narrowing_cast(detail::ibeta_imp(static_cast(a), static_cast(b), static_cast(x), forwarding_policy(), false, true), "boost::math::ibeta<%1%>(%1%,%1%,%1%)"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:29:28: required from here 29 | return boost::math::ibeta(a, b, x, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 695 | result_type operator()() | ^~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp: In function 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:44: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:18: /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 217 | value_type v = g(); | ^ /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 "/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/mvmer.stan code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) Wrote C++ file "stan_files/mvmer.cc" g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I/usr/include -DTBB_INTERFACE_NEW -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/mvmer.cc -o stan_files/mvmer.o In file included from /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:11, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:18, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:129, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:43, from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:4, from stan_files/mvmer.hpp:18, from stan_files/mvmer.cc:3: /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> boost::math::detail::hypergeometric_pFq_checked_series_impl(const Seq&, const Seq&, const Real&, const Policy&, const Terminal&, long long int&) [with Seq = std::vector; Real = long double; Policy = boost::math::policies::policy; Terminal = iteration_terminator]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:107: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy; typename tools::promote_args::type = double; typename Seq::value_type = double]' 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:72:35: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*) [with Seq = std::vector; Real = double; typename tools::promote_args::type = double; typename Seq::value_type = double]' 72 | return hypergeometric_pFq(aj, bj, z, p_abs_error, boost::math::policies::policy<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:55:41: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 55 | return boost::math::hypergeometric_pFq( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | std::vector(a_ref.data(), a_ref.data() + a_ref.size()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | std::vector(b_ref.data(), b_ref.data() + b_ref.size()), z); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp:122:28: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 122 | std::pair hypergeometric_pFq_checked_series_impl(const Seq& aj, const Seq& bj, const Real& z, const Policy& pol, const Terminal& termination, long long& log_scale) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:31: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 217 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double]' 252 | return continued_fraction_a(g, factor, max_iter); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]' 314 | return 1 / (z - a + 1 + boost::math::tools::continued_fraction_a(f, eps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1176 | result += log(upper_gamma_fraction(a, x, policies::get_epsilon())); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 2130 | detail::gamma_incomplete_imp(static_cast(a), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2131 | static_cast(z), true, false, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2132 | forwarding_policy(), static_cast(nullptr)), "gamma_p<%1%>(%1%, %1%)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here 76 | return boost::math::gamma_p(z, a, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:260: /usr/include/boost/math/special_functions/owens_t.hpp: In instantiation of 'std::pair<_FIter, _FIter> boost::math::detail::owens_t_T1_accelerated(T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy]': /usr/include/boost/math/special_functions/owens_t.hpp:874:46: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&, const std::integral_constant&) [with RealType = long double; Policy = boost::math::policies::policy]' 874 | p1 = owens_t_T1_accelerated(h, a, forwarding_policy()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:979:36: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 979 | return owens_t_dispatch(h, a, ah, pol, tag_type()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1000:38: required from 'RealType boost::math::detail::owens_t(RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 1000 | val = owens_t_dispatch(h, fabs_a, fabs_ah, pol); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1072:86: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2, const Policy&) [with T1 = double; T2 = double; Policy = policies::policy; tools::promote_args_t = double]' 1072 | return policies::checked_narrowing_cast(detail::owens_t(static_cast(h), static_cast(a), pol), "boost::math::owens_t<%1%>(%1%,%1%)"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1078:24: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2) [with T1 = double; T2 = double; tools::promote_args_t = double]' 1078 | return owens_t(h, a, policies::policy<>()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:58:72: required from here 58 | inline double owens_t(double h, double a) { return boost::math::owens_t(h, a); } | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:543:26: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 543 | std::pair owens_t_T1_accelerated(T h, T a, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/binomial.hpp:15, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 123 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double]' 156 | return continued_fraction_b(g, factor, max_terms); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 732 | T fract = boost::math::tools::continued_fraction_b(f, boost::math::policies::get_epsilon()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1377 | fract = ibeta_fraction2(a, b, x, y, pol, normalised, p_derivative); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1414 | return ibeta_imp(a, b, x, pol, inv, normalised, static_cast(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 1570 | return policies::checked_narrowing_cast(detail::ibeta_imp(static_cast(a), static_cast(b), static_cast(x), forwarding_policy(), false, true), "boost::math::ibeta<%1%>(%1%,%1%,%1%)"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:29:28: required from here 29 | return boost::math::ibeta(a, b, x, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 695 | result_type operator()() | ^~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp: In function 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:44: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:18: /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 217 | value_type v = g(); | ^ /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 "/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/polr.stan code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) Wrote C++ file "stan_files/polr.cc" g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I/usr/include -DTBB_INTERFACE_NEW -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/polr.cc -o stan_files/polr.o In file included from /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:11, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:18, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:129, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:43, from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:4, from stan_files/polr.hpp:18, from stan_files/polr.cc:3: /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> boost::math::detail::hypergeometric_pFq_checked_series_impl(const Seq&, const Seq&, const Real&, const Policy&, const Terminal&, long long int&) [with Seq = std::vector; Real = long double; Policy = boost::math::policies::policy; Terminal = iteration_terminator]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:107: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy; typename tools::promote_args::type = double; typename Seq::value_type = double]' 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:72:35: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*) [with Seq = std::vector; Real = double; typename tools::promote_args::type = double; typename Seq::value_type = double]' 72 | return hypergeometric_pFq(aj, bj, z, p_abs_error, boost::math::policies::policy<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:55:41: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 55 | return boost::math::hypergeometric_pFq( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | std::vector(a_ref.data(), a_ref.data() + a_ref.size()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | std::vector(b_ref.data(), b_ref.data() + b_ref.size()), z); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp:122:28: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 122 | std::pair hypergeometric_pFq_checked_series_impl(const Seq& aj, const Seq& bj, const Real& z, const Policy& pol, const Terminal& termination, long long& log_scale) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:31: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 217 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double]' 252 | return continued_fraction_a(g, factor, max_iter); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]' 314 | return 1 / (z - a + 1 + boost::math::tools::continued_fraction_a(f, eps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1176 | result += log(upper_gamma_fraction(a, x, policies::get_epsilon())); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 2130 | detail::gamma_incomplete_imp(static_cast(a), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2131 | static_cast(z), true, false, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2132 | forwarding_policy(), static_cast(nullptr)), "gamma_p<%1%>(%1%, %1%)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here 76 | return boost::math::gamma_p(z, a, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:260: /usr/include/boost/math/special_functions/owens_t.hpp: In instantiation of 'std::pair<_FIter, _FIter> boost::math::detail::owens_t_T1_accelerated(T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy]': /usr/include/boost/math/special_functions/owens_t.hpp:874:46: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&, const std::integral_constant&) [with RealType = long double; Policy = boost::math::policies::policy]' 874 | p1 = owens_t_T1_accelerated(h, a, forwarding_policy()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:979:36: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 979 | return owens_t_dispatch(h, a, ah, pol, tag_type()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1000:38: required from 'RealType boost::math::detail::owens_t(RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 1000 | val = owens_t_dispatch(h, fabs_a, fabs_ah, pol); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1072:86: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2, const Policy&) [with T1 = double; T2 = double; Policy = policies::policy; tools::promote_args_t = double]' 1072 | return policies::checked_narrowing_cast(detail::owens_t(static_cast(h), static_cast(a), pol), "boost::math::owens_t<%1%>(%1%,%1%)"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1078:24: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2) [with T1 = double; T2 = double; tools::promote_args_t = double]' 1078 | return owens_t(h, a, policies::policy<>()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:58:72: required from here 58 | inline double owens_t(double h, double a) { return boost::math::owens_t(h, a); } | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:543:26: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 543 | std::pair owens_t_T1_accelerated(T h, T a, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/binomial.hpp:15, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 123 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double]' 156 | return continued_fraction_b(g, factor, max_terms); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 732 | T fract = boost::math::tools::continued_fraction_b(f, boost::math::policies::get_epsilon()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1377 | fract = ibeta_fraction2(a, b, x, y, pol, normalised, p_derivative); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1414 | return ibeta_imp(a, b, x, pol, inv, normalised, static_cast(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 1570 | return policies::checked_narrowing_cast(detail::ibeta_imp(static_cast(a), static_cast(b), static_cast(x), forwarding_policy(), false, true), "boost::math::ibeta<%1%>(%1%,%1%,%1%)"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:29:28: required from here 29 | return boost::math::ibeta(a, b, x, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 695 | result_type operator()() | ^~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp: In function 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:44: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:18: /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 217 | value_type v = g(); | ^ /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I/usr/include -DTBB_INTERFACE_NEW -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c init.cpp -o init.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o rstanarm.so stan_files/bernoulli.o stan_files/binomial.o stan_files/continuous.o stan_files/count.o stan_files/jm.o stan_files/lm.o stan_files/mvmer.o stan_files/polr.o init.o -L/usr/lib/aarch64-linux-gnu -Wl,-rpath,/usr/lib/aarch64-linux-gnu -ltbb -ltbbmalloc -L/usr/lib/R/site-library/RcppParallel/lib/ -Wl,-rpath,/usr/lib/R/site-library/RcppParallel/lib/ -ltbb -ltbbmalloc -L/usr/lib/R/lib -lR rm stan_files/polr.cc stan_files/mvmer.cc stan_files/count.cc stan_files/lm.cc stan_files/jm.cc stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc make[1]: Leaving directory '/build/reproducible-path/r-cran-rstanarm-2.32.1/src' make[1]: Entering directory '/build/reproducible-path/r-cran-rstanarm-2.32.1/src' make[1]: Leaving directory '/build/reproducible-path/r-cran-rstanarm-2.32.1/src' installing to /build/reproducible-path/r-cran-rstanarm-2.32.1/debian/r-cran-rstanarm/usr/lib/R/site-library/00LOCK-r-cran-rstanarm-2.32.1/00new/rstanarm/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes Error in loadNamespace(x) : there is no package called 'roxygen2' Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ** testing if installed package can be loaded from temporary location code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?) ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?) ** testing if installed package keeps a record of temporary installation path * DONE (rstanarm) W: Ignoring specified R dependency: R (>= 3.4.0) I: Using r-cran-rcpp for Depends:Rcpp (>= 0.12.0) I: Using r-cran-data.table for Recommends:data.table (>= 1.10.0) I: Using r-cran-digest for Recommends:digest I: Using r-cran-gridextra for Recommends:gridextra I: Using r-cran-hsaur3 for Recommends:hsaur3 I: Using r-cran-knitr for Recommends:knitr (>= 1.15.1) I: Using r-cran-mass for Recommends:mass I: Using r-cran-mgcv for Recommends:mgcv (>= 1.8-13) I: Using r-cran-rmarkdown for Recommends:rmarkdown I: Using r-cran-roxygen2 for Recommends:roxygen2 I: Using r-cran-testthat for Recommends:testthat (>= 1.0.2) I: Using r-cran-gamm4 for Recommends:gamm4 I: Using r-cran-shiny for Recommends:shiny I: Using r-cran-v8 for Recommends:v8 W: Please install devscripts to enable an attempt to create debian package for Recommends:xvfb. W: Please install devscripts to enable an attempt to create debian package for Recommends:xauth. W: Please install devscripts to enable an attempt to create debian package for Recommends:xfonts-base. W: Please install devscripts to enable an attempt to create debian package for Recommends:xterm. W: Cannot find a debian package for Suggests:biglm W: Cannot find a debian package for Suggests:betareg I: Using r-cran-data.table for Suggests:data.table (>= 1.10.0) I: Using r-cran-knitr for Suggests:knitr (>= 1.15.1) I: Using r-cran-mgcv for Suggests:mgcv (>= 1.8-13) I: Using r-cran-stanheaders for Suggests:StanHeaders (>= 2.21.0) I: Using r-cran-testthat for Suggests:testthat (>= 1.0.2) I: Using r-cran-bayesplot for Imports:bayesplot (>= 1.7.0) I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 2.2.1) I: Version replacement between package version 1.1-8 and Debian version 1.1-35.5-1+b1 suspicious. Do not replace anything. I: Using r-cran-lme4 by changing version to (>= 1.1-8) for Imports:lme4 (>= 1.1-8) I: Using r-cran-loo for Imports:loo (>= 2.1.0) I: Version replacement between package version 1.2-13 and Debian version 1.7-1-1 suspicious. Do not replace anything. I: Using r-cran-matrix by changing version to (>= 1.2-13) for Imports:Matrix (>= 1.2-13) I: Using r-cran-nlme for Imports:nlme (>= 3.1-124) I: Using r-cran-posterior for Imports:posterior I: Using r-cran-rstan for Imports:rstan (>= 2.32.0) I: Using r-cran-rstantools for Imports:rstantools (>= 2.1.0) I: Using r-cran-shinystan for Imports:shinystan (>= 2.3.0) I: Using r-cran-survival for Imports:survival (>= 2.40.1) I: Using r-cran-rcppparallel for Imports:RcppParallel (>= 5.0.1) I: Using r-cran-stanheaders for LinkingTo:StanHeaders (>= 2.32.0) I: Using r-cran-rstan for LinkingTo:rstan (>= 2.32.0) I: Using r-cran-bh for LinkingTo:BH (>= 1.72.0-2) I: Using r-cran-rcpp for LinkingTo:Rcpp (>= 0.12.0) I: Using r-cran-rcppeigen for LinkingTo:RcppEigen (>= 0.3.3.3.0) I: Using r-cran-rcppparallel for LinkingTo:RcppParallel (>= 5.0.1) I: Use r-cran-rstanarm as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-rstanarm-dbgsym' in '../r-cran-rstanarm-dbgsym_2.32.1-2_arm64.deb'. dpkg-deb: building package 'r-cran-rstanarm' in '../r-cran-rstanarm_2.32.1-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-rstanarm_2.32.1-2_arm64.buildinfo dpkg-genchanges --build=binary -O../r-cran-rstanarm_2.32.1-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1526306/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1526306/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1526306 and its subdirectories I: Current time: Wed Dec 4 08:29:20 +14 2024 I: pbuilder-time-stamp: 1733250560