I: pbuilder: network access will be disabled during build
I: Current time: Mon Mar  9 05:48:36 +14 2026
I: pbuilder-time-stamp: 1772984916
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-pauvre_0.2.3-4.dsc]
I: copying [./python-pauvre_0.2.3.orig.tar.gz]
I: copying [./python-pauvre_0.2.3-4.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-4.dsc: unsupported subcommand
dpkg-source: info: extracting python-pauvre in python-pauvre-0.2.3
dpkg-source: info: unpacking python-pauvre_0.2.3.orig.tar.gz
dpkg-source: info: unpacking python-pauvre_0.2.3-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying lsi-test-args.patch
dpkg-source: info: applying biopython-1.80.patch
dpkg-source: info: applying pandas-2.0.patch
dpkg-source: info: applying syntaxwarning.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/D01_modify_environment starting
debug: Running on codethink03-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Mar  8 15:48 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
  BASH_VERSION='5.2.37(1)-release'
  BUILDDIR=/build/reproducible-path
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=arm64
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DIRSTACK=()
  DISTRIBUTION=unstable
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=aarch64
  HOST_ARCH=arm64
  IFS=' 	
  '
  INVOCATION_ID=67b8e97c711a4e7a80d798206bc501e8
  LANG=C
  LANGUAGE=nl_BE:nl
  LC_ALL=C
  MACHTYPE=aarch64-unknown-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=3909324
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TlbmLr9B/pbuilderrc_eQvS --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TlbmLr9B/b2 --logfile b2/build.log python-pauvre_0.2.3-4.dsc'
  SUDO_GID=109
  SUDO_UID=104
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://192.168.101.4:3128
I: uname -a
  Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib, python3-biopython, python3-pandas, python3-numpy, python3-scipy, python3-sklearn, python3-tk, python3-progressbar
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19920 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on python3; however:
  Package python3 is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on python3-matplotlib; however:
  Package python3-matplotlib is not installed.
 pbuilder-satisfydepends-dummy depends on python3-biopython; however:
  Package python3-biopython is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pandas; however:
  Package python3-pandas is not installed.
 pbuilder-satisfydepends-dummy depends on python3-numpy; however:
  Package python3-numpy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-scipy; however:
  Package python3-scipy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-sklearn; however:
  Package python3-sklearn is not installed.
 pbuilder-satisfydepends-dummy depends on python3-tk; however:
  Package python3-tk is not installed.
 pbuilder-satisfydepends-dummy depends on python3-progressbar; however:
  Package python3-progressbar is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-progressbar{a} python3-pyparsing{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-zipp{a} python3.12-tk{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl fonts-dejavu-extra isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx ncbi-blast+ psmisc python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-pytest python3-tables shared-mime-info wget xdg-user-dirs 
0 packages upgraded, 161 newly installed, 0 to remove and 0 not upgraded.
Need to get 126 MB of archives. After unpacking 597 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-3+b1 [852 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-3+b1 [1987 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-1 [259 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-3+b1 [1913 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-3+b1 [740 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 22 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-2 [91.5 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB]
Get: 34 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.46-4 [276 kB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 37 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 39 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB]
Get: 41 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB]
Get: 46 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 47 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 48 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB]
Get: 52 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB]
Get: 55 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB]
Get: 56 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB]
Get: 57 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B]
Get: 58 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 59 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 60 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 61 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get: 63 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get: 64 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 65 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 66 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 67 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 68 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 69 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 70 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 71 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 72 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB]
Get: 73 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 74 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 84 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB]
Get: 85 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.3-1 [190 kB]
Get: 86 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-2 [104 kB]
Get: 87 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB]
Get: 88 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 89 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 90 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get: 91 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 92 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB]
Get: 93 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB]
Get: 94 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB]
Get: 95 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB]
Get: 96 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB]
Get: 97 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 98 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB]
Get: 99 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB]
Get: 100 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get: 101 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB]
Get: 102 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 103 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 104 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB]
Get: 105 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB]
Get: 106 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get: 107 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB]
Get: 108 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB]
Get: 109 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB]
Get: 110 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB]
Get: 111 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB]
Get: 112 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB]
Get: 113 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get: 114 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB]
Get: 115 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB]
Get: 116 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB]
Get: 117 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB]
Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-attr all 24.3.0-1 [68.8 kB]
Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.2+ds-2 [135 kB]
Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.2+ds-2 [4129 kB]
Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 122 http://deb.debian.org/debian unstable/main arm64 python3.12-tk arm64 3.12.8-5+b1 [111 kB]
Get: 123 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.1-3+b1 [102 kB]
Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.1-1 [9464 B]
Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 11.1.0-4 [81.6 kB]
Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.1.0-4 [515 kB]
Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB]
Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-1 [89.3 kB]
Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B]
Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.2.5-1 [1117 kB]
Get: 131 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB]
Get: 132 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.85+dfsg-1 [1663 kB]
Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB]
Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB]
Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B]
Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.2-1 [31.0 kB]
Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB]
Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-6 [95.1 kB]
Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.0-1+b1 [1433 kB]
Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB]
Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.14.1-4 [18.5 MB]
Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB]
Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-1 [4147 kB]
Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB]
Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-unicodedata2 arm64 15.1.0+ds-1+b4 [298 kB]
Get: 149 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB]
Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.55.3-2 [1501 kB]
Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-joblib all 1.3.2-6 [216 kB]
Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-3 [71.5 kB]
Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB]
Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB]
Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.8.3-3+b2 [5583 kB]
Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-7 [6029 kB]
Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-7 [3097 kB]
Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-progressbar all 2.5-4 [10.8 kB]
Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-7+b1 [5397 kB]
Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-sklearn all 1.4.2+dfsg-7 [2248 kB]
Fetched 126 MB in 0s (255 MB/s)
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Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Current default time zone: 'Etc/UTC'
Local time is now:      Sun Mar  8 15:49:03 UTC 2026.
Universal Time is now:  Sun Mar  8 15:49:03 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Setting up libfile-stripnondeterminism-perl (1.14.1-1) ...
Setting up liblapack3:arm64 (3.12.1-2) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up gettext (0.23.1-1) ...
Setting up libxrender1:arm64 (1:0.9.10-1.1+b4) ...
Setting up libtool (2.5.4-3) ...
Setting up fontconfig-config (2.15.0-2) ...
Setting up libwebpdemux2:arm64 (1.5.0-0.1) ...
Setting up libxext6:arm64 (2:1.3.4-1+b3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libglib2.0-0t64:arm64 (2.82.4-2) ...
No schema files found: doing nothing.
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ...
Setting up libreadline8t64:arm64 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.1-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up xml-core (0.19) ...
Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ...
Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
Setting up libxss1:arm64 (1:1.2.3-1+b3) ...
Setting up libfontconfig1:arm64 (2.15.0-2) ...
Setting up libpython3.13-stdlib:arm64 (3.13.1-3+b1) ...
Setting up libpython3-stdlib:arm64 (3.13.1-2) ...
Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ...
Setting up libxft2:arm64 (2.3.6-1+b4) ...
Setting up python3.13 (3.13.1-3+b1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libtk8.6:arm64 (8.6.16-1) ...
Setting up python3.12-tk (3.12.8-5+b1) ...
Setting up python3 (3.13.1-2) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-freetype (2.5.1-1) ...
Setting up xfonts-utils (1:7.7+7) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:arm64 (1.18.2-2) ...
Setting up python3.13-tk (3.13.1-3+b1) ...
Setting up python3-platformdirs (4.3.6-1) ...
Setting up python3-tz (2024.2-1) ...
Setting up python3-fs (2.4.16-6) ...
Setting up python3-progressbar (2.5-4) ...
Setting up python3-decorator (5.1.1-5) ...
Setting up python3-packaging (24.2-1) ...
Setting up python3-chardet (5.2.0+dfsg-2) ...
Setting up python3-pyparsing (3.1.2-1) ...
Setting up python3-brotli (1.1.0-2+b6) ...
Setting up libraqm0:arm64 (0.10.2-1) ...
Setting up python3-cycler (0.12.1-1) ...
Setting up python3-kiwisolver (1.4.7-3) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-numpy (1:2.2.2+ds-2) ...
Setting up python3-lxml:arm64 (5.3.0-1+b1) ...
Setting up python3-dateutil (2.9.0-3) ...
Setting up python3-contourpy (1.3.1-1) ...
Setting up python3-mpmath (1.3.0-1) ...
Setting up python3-more-itertools (10.6.0-1) ...
Setting up python3-sympy (1.13.3-1) ...
Setting up python3-attr (24.3.0-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ...
Setting up python3-scipy (1.14.1-4) ...
Setting up python3-cairo (1.26.1-2+b1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3-joblib (1.3.2-6) ...
Setting up python3-lz4 (4.4.0+dfsg-1) ...
Setting up python3-unicodedata2 (15.1.0+ds-1+b4) ...
Setting up blt (2.5.3+dfsg-7+b1) ...
Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-7) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up python3-threadpoolctl (3.1.0-1) ...
Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-7+b1) ...
Setting up python3-tk:arm64 (3.13.1-1) ...
Setting up debhelper (13.24.1) ...
Setting up fonts-urw-base35 (20200910-8) ...
Setting up python3-pil:arm64 (11.1.0-4) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-pandas (2.2.3+dfsg-7) ...
Setting up python3-pil.imagetk:arm64 (11.1.0-4) ...
Setting up python3-rlpycairo (0.3.0-3) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-sklearn (1.4.2+dfsg-7) ...
Setting up python3-reportlab (4.2.5-1) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up dh-python (6.20250108) ...
Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
Setting up python3-fonttools (4.55.3-2) ...
Setting up python3-matplotlib (3.8.3-3+b2) ...
Processing triggers for libc-bin (2.40-6) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.85+dfsg-1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/python-pauvre-0.2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../python-pauvre_0.2.3-4_source.changes
dpkg-buildpackage: info: source package python-pauvre
dpkg-buildpackage: info: source version 0.2.3-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py clean 
running clean
removing '/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --with python3 --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config 
running config
   dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build 
running build
running build_py
creating /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/gfftools.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/functions.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/browser.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/version.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/stats.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/redwood.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/rcparams.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/pauvre_main.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/marginplot.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/custommargin.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/bamparse.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
copying pauvre/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre
creating /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests
copying pauvre/tests/test_synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests
copying pauvre/tests/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests
creating /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi
copying pauvre/lsi/test.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi
copying pauvre/lsi/lsi.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi
copying pauvre/lsi/helper.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi
copying pauvre/lsi/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi
copying pauvre/lsi/T.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi
copying pauvre/lsi/Q.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi
running egg_info
creating pauvre.egg-info
writing pauvre.egg-info/PKG-INFO
writing dependency_links to pauvre.egg-info/dependency_links.txt
writing entry points to pauvre.egg-info/entry_points.txt
writing requirements to pauvre.egg-info/requires.txt
writing top-level names to pauvre.egg-info/top_level.txt
writing manifest file 'pauvre.egg-info/SOURCES.txt'
reading manifest file 'pauvre.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pauvre.egg-info/SOURCES.txt'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/python-pauvre-0.2.3'
PYBUILDDIR="$(echo "/build/reproducible-path/python-pauvre-0.2.3"/.pybuild/cpython3_3.*/build)" \
&& mkdir -p "${PYBUILDDIR}/pauvre/tests/testdata/alignments" \
	"${PYBUILDDIR}/pauvre/tests/testresults" \
&& cp -r "/build/reproducible-path/python-pauvre-0.2.3/debian/tests/gff_files" \
	"${PYBUILDDIR}/pauvre/tests/testdata" \
&& BUILDDIR="${PYBUILDDIR}" PATH="/build/reproducible-path/python-pauvre-0.2.3/debian/bin:$PATH" \
	dh_auto_test \
&& rm "${PYBUILDDIR}/input" \
&& rm -r "${PYBUILDDIR}/pauvre/tests/testdata" \
	"${PYBUILDDIR}/pauvre/tests/testresults"
I: pybuild base:311: cd /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build; python3.13 -m unittest discover -v 
test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case.test_normal_plotting_scenario)
This verifies that the LibSeq class is constructed with all of the ... + export PYTHONPATH=/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build
+ PYTHONPATH=/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build
+ exec python3 /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/pauvre_main.py synplot --aln_dir /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/alignments/ --fileform pdf --gff_paths /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff --center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi'
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:106: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  self.seqlen = int(self.features.loc[self.features['tags'] == "Is_circular=true", 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:106: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  self.seqlen = int(self.features.loc[self.features['tags'] == "Is_circular=true", 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:106: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  self.seqlen = int(self.features.loc[self.features['tags'] == "Is_circular=true", 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start'])
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/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:207: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead
  this_x = float(self.features.loc[self.features['name']
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:209: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead
  other_x = float(othermatch)  # /other_GFF.seqlen
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/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py:519: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  x_offset = -1 * int(gff.features.loc[gff.features['name'] == args.center_on, 'center'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py:519: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  x_offset = -1 * int(gff.features.loc[gff.features['name'] == args.center_on, 'center'])
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py:519: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead
  x_offset = -1 * int(gff.features.loc[gff.features['name'] == args.center_on, 'center'])
 - Setting tick labels.
/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py:564: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator.
  panel0.set_xticklabels(empty_string_labels)
 - Running print_images.
Line sweep results:
TIME ELAPSED: 0.0006606578826904297
N^2 comparison results:
0
TIME ELAPSED: 0.00037550926208496094
6
6
The data is: Namespace(command='synplot', QUIET=False, aln_dir='/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/alignments', center_on='COX1', dpi=600, fileform=['pdf'], gff_paths=['/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff', '/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff', '/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff'], gff_labels=['B. forskalii', 'P. bachei', 'M. leidyi'], no_timestamp=False, optimum_order=False, BASENAME=None, ratio=None, sandwich=False, start_with_aligned_genes=False, stop_codons=True, transparent=True, func=<function run_subtool at 0xffffa0749b20>)
The best gene combination is [0, 1, 2]

new fewest global intersections: 42

new fewest global intersections: 40

new fewest global intersections: 38

new fewest global intersections: 34

new fewest global intersections: 32
getting alignments
file list is:
{}
done getting alignments
seqs_dict is:
{}
         sequence    source featType  start   stop strand       tags  name   center  width  lmost  rmost  track
0   Bf201706_circ  Geneious     gene  -1342   -782      +  Name=COX2  COX2  -1062.0    561  -1342   -782      0
1   Bf201706_circ  Geneious     gene   -760    761      +  Name=COX1  COX1      0.5   1521   -760    761      0
2   Bf201706_circ  Geneious     rRNA   1119   1495      +   Name=12S   12S   1307.0    376   1119   1495      0
3   Bf201706_circ  Geneious     rRNA   1495   2355      +   Name=16S   16S   1925.0    860   1495   2355      0
4   Bf201706_circ  Geneious     gene   2338   2539      +   Name=ND6   ND6   2438.5    201   2338   2539      0
5   Bf201706_circ  Geneious     gene   2547   3288      +  Name=COX3  COX3   2917.5    741   2547   3288      0
6   Bf201706_circ  Geneious     gene   3563   3935      +   Name=ND3   ND3   3749.0    372   3563   3935      0
7   Bf201706_circ  Geneious     gene   3938   5018      +   Name=ND4   ND4   4478.0   1080   3938   5018      0
8   Bf201706_circ  Geneious     gene   5020   5206      +  Name=ND4L  ND4L   5113.0    186   5020   5206      0
9   Bf201706_circ  Geneious     gene   5220   6696      +   Name=ND5   ND5   5958.0   1476   5220   6696      0
10  Bf201706_circ  Geneious     gene   6847   7909      +  Name=URF1  URF1   7378.0   1062   6847   7909      0
11  Bf201706_circ  Geneious     gene   8439   9105      +  Name=URF2  URF2   8772.0    666   8439   9105      0
12  Bf201706_circ  Geneious     gene   9255   9981      +   Name=ND2   ND2   9618.0    726   9255   9981      0
13  Bf201706_circ  Geneious     gene  10102  11155      +  Name=CYTB  CYTB  10628.5   1053  10102  11155      0
14  Bf201706_circ  Geneious     gene  11076  11988      +   Name=ND1   ND1  11532.0    912  11076  11988      0
len plottable 15
 - i,j are currently: 0,1
stop: -782. start: -760.
    - putting elements 0 through (including) 1 together
   index       sequence    source featType  start  stop strand       tags  name  center  width  lmost  rmost  track
0      0  Bf201706_circ  Geneious     gene  -1342  -782      +  Name=COX2  COX2 -1062.0    561  -1342   -782      0
 - i,j are currently: 1,1
stop: 761. start: 1119.
    - putting elements 1 through (including) 2 together
   index       sequence    source featType  start  stop strand       tags  name  center  width  lmost  rmost  track
0      1  Bf201706_circ  Geneious     gene   -760   761      +  Name=COX1  COX1     0.5   1521   -760    761      0
 - i,j are currently: 2,1
stop: 1495. start: 1495.
    - putting elements 2 through (including) 3 together
   index       sequence    source featType  start  stop strand      tags name  center  width  lmost  rmost  track
0      2  Bf201706_circ  Geneious     rRNA   1119  1495      +  Name=12S  12S  1307.0    376   1119   1495      0
 - i,j are currently: 3,1
stop: 2355. start: 2338.
 - i,j are currently: 3,2
stop: 2355. start: 2547.
    - putting elements 3 through (including) 5 together
   index       sequence    source featType  start  stop strand      tags name  center  width  lmost  rmost  track
0      3  Bf201706_circ  Geneious     rRNA   1495  2355      +  Name=16S  16S  1925.0    860   1495   2355      0
1      4  Bf201706_circ  Geneious     gene   2338  2539      +  Name=ND6  ND6  2438.5    201   2338   2539      0
 - i,j are currently: 4,1
stop: 2539. start: 2547.
    - putting elements 4 through (including) 5 together
   index       sequence    source featType  start  stop strand      tags name  center  width  lmost  rmost  track
0      4  Bf201706_circ  Geneious     gene   2338  2539      +  Name=ND6  ND6  2438.5    201   2338   2539      0
 - i,j are currently: 5,1
stop: 3288. start: 3563.
    - putting elements 5 through (including) 6 together
   index       sequence    source featType  start  stop strand       tags  name  center  width  lmost  rmost  track
0      5  Bf201706_circ  Geneious     gene   2547  3288      +  Name=COX3  COX3  2917.5    741   2547   3288      0
 - i,j are currently: 6,1
stop: 3935. start: 3938.
    - putting elements 6 through (including) 7 together
   index       sequence    source featType  start  stop strand      tags name  center  width  lmost  rmost  track
0      6  Bf201706_circ  Geneious     gene   3563  3935      +  Name=ND3  ND3  3749.0    372   3563   3935      0
 - i,j are currently: 7,1
stop: 5018. start: 5020.
    - putting elements 7 through (including) 8 together
   index       sequence    source featType  start  stop strand      tags name  center  width  lmost  rmost  track
0      7  Bf201706_circ  Geneious     gene   3938  5018      +  Name=ND4  ND4  4478.0   1080   3938   5018      0
 - i,j are currently: 8,1
stop: 5206. start: 5220.
    - putting elements 8 through (including) 9 together
   index       sequence    source featType  start  stop strand       tags  name  center  width  lmost  rmost  track
0      8  Bf201706_circ  Geneious     gene   5020  5206      +  Name=ND4L  ND4L  5113.0    186   5020   5206      0
 - i,j are currently: 9,1
stop: 6696. start: 6847.
    - putting elements 9 through (including) 10 together
   index       sequence    source featType  start  stop strand      tags name  center  width  lmost  rmost  track
0      9  Bf201706_circ  Geneious     gene   5220  6696      +  Name=ND5  ND5  5958.0   1476   5220   6696      0
 - i,j are currently: 10,1
stop: 7909. start: 8439.
    - putting elements 10 through (including) 11 together
   index       sequence    source featType  start  stop strand       tags  name  center  width  lmost  rmost  track
0     10  Bf201706_circ  Geneious     gene   6847  7909      +  Name=URF1  URF1  7378.0   1062   6847   7909      0
 - i,j are currently: 11,1
stop: 9105. start: 9255.
    - putting elements 11 through (including) 12 together
   index       sequence    source featType  start  stop strand       tags  name  center  width  lmost  rmost  track
0     11  Bf201706_circ  Geneious     gene   8439  9105      +  Name=URF2  URF2  8772.0    666   8439   9105      0
 - i,j are currently: 12,1
stop: 9981. start: 10102.
    - putting elements 12 through (including) 13 together
   index       sequence    source featType  start  stop strand      tags name  center  width  lmost  rmost  track
0     12  Bf201706_circ  Geneious     gene   9255  9981      +  Name=ND2  ND2  9618.0    726   9255   9981      0
 - i,j are currently: 13,1
stop: 11155. start: 11076.
   index       sequence    source featType  start   stop strand       tags  name   center  width  lmost  rmost  track
0     13  Bf201706_circ  Geneious     gene  10102  11155      +  Name=CYTB  CYTB  10628.5   1053  10102  11155      0
1     14  Bf201706_circ  Geneious     gene  11076  11988      +   Name=ND1   ND1  11532.0    912  11076  11988      0
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im in here feat len=2
plotting lff
plotting rff
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    sequence    source featType  start   stop strand            tags  name   center  width  lmost  rmost  track
0   JN392469  Geneious     gene   -767    768      +  Name=COX1 gene  COX1      0.5   1536   -767    768      0
1   JN392469  Geneious     gene    892   1470      +  Name=COX2 gene  COX2   1181.0    579    892   1470      0
2   JN392469  Geneious     rRNA   1750   2692      +   Name=16S rRNA   16S   2221.0    943   1750   2692      0
3   JN392469  Geneious     rRNA   2723   3285      +   Name=12S rRNA   12S   3004.0    563   2723   3285      0
4   JN392469  Geneious     gene   3286   4023      +  Name=COX3 gene  COX3   3654.5    738   3286   4023      0
5   JN392469  Geneious     gene   4034   4699      +   Name=ND2 gene   ND2   4366.5    666   4034   4699      0
6   JN392469  Geneious     gene   4753   5070      +   Name=ND3 gene   ND3   4911.5    318   4753   5070      0
7   JN392469  Geneious     gene   5074   6141      +   Name=ND4 gene   ND4   5607.5   1068   5074   6141      0
8   JN392469  Geneious     gene   6306   7385      +  Name=CYTB gene  CYTB   6845.5   1080   6306   7385      0
9   JN392469  Geneious     gene   7390   8901      +   Name=ND5 gene   ND5   8145.5   1512   7390   8901      0
10  JN392469  Geneious     gene   8904   9740      +   Name=ND1 gene   ND1   9322.0    837   8904   9740      0
11  JN392469  Geneious     gene   9743   9937      +   Name=ND6 gene   ND6   9840.0    195   9743   9937      0
12  JN392469  Geneious     gene  10035  10232      +  Name=ND4L gene  ND4L  10133.5    198  10035  10232      0
len plottable 13
 - i,j are currently: 0,1
stop: 768. start: 892.
    - putting elements 0 through (including) 1 together
   index  sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0      0  JN392469  Geneious     gene   -767   768      +  Name=COX1 gene  COX1     0.5   1536   -767    768      0
 - i,j are currently: 1,1
stop: 1470. start: 1750.
    - putting elements 1 through (including) 2 together
   index  sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0      1  JN392469  Geneious     gene    892  1470      +  Name=COX2 gene  COX2  1181.0    579    892   1470      0
 - i,j are currently: 2,1
stop: 2692. start: 2723.
    - putting elements 2 through (including) 3 together
   index  sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      2  JN392469  Geneious     rRNA   1750  2692      +  Name=16S rRNA  16S  2221.0    943   1750   2692      0
 - i,j are currently: 3,1
stop: 3285. start: 3286.
    - putting elements 3 through (including) 4 together
   index  sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      3  JN392469  Geneious     rRNA   2723  3285      +  Name=12S rRNA  12S  3004.0    563   2723   3285      0
 - i,j are currently: 4,1
stop: 4023. start: 4034.
    - putting elements 4 through (including) 5 together
   index  sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0      4  JN392469  Geneious     gene   3286  4023      +  Name=COX3 gene  COX3  3654.5    738   3286   4023      0
 - i,j are currently: 5,1
stop: 4699. start: 4753.
    - putting elements 5 through (including) 6 together
   index  sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      5  JN392469  Geneious     gene   4034  4699      +  Name=ND2 gene  ND2  4366.5    666   4034   4699      0
 - i,j are currently: 6,1
stop: 5070. start: 5074.
    - putting elements 6 through (including) 7 together
   index  sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      6  JN392469  Geneious     gene   4753  5070      +  Name=ND3 gene  ND3  4911.5    318   4753   5070      0
 - i,j are currently: 7,1
stop: 6141. start: 6306.
    - putting elements 7 through (including) 8 together
   index  sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      7  JN392469  Geneious     gene   5074  6141      +  Name=ND4 gene  ND4  5607.5   1068   5074   6141      0
 - i,j are currently: 8,1
stop: 7385. start: 7390.
    - putting elements 8 through (including) 9 together
   index  sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0      8  JN392469  Geneious     gene   6306  7385      +  Name=CYTB gene  CYTB  6845.5   1080   6306   7385      0
 - i,j are currently: 9,1
stop: 8901. start: 8904.
    - putting elements 9 through (including) 10 together
   index  sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      9  JN392469  Geneious     gene   7390  8901      +  Name=ND5 gene  ND5  8145.5   1512   7390   8901      0
 - i,j are currently: 10,1
stop: 9740. start: 9743.
    - putting elements 10 through (including) 11 together
   index  sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0     10  JN392469  Geneious     gene   8904  9740      +  Name=ND1 gene  ND1  9322.0    837   8904   9740      0
 - i,j are currently: 11,1
stop: 9937. start: 10035.
    - putting elements 11 through (including) 12 together
   index  sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0     11  JN392469  Geneious     gene   9743  9937      +  Name=ND6 gene  ND6  9840.0    195   9743   9937      0
   index  sequence    source featType  start   stop strand            tags  name   center  width  lmost  rmost  track
0     12  JN392469  Geneious     gene  10035  10232      +  Name=ND4L gene  ND4L  10133.5    198  10035  10232      0
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     sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0   NC_016117  Geneious     gene   -760   760      +  Name=COX1 gene  COX1     0.0   1521   -760    760      0
1   NC_016117  Geneious     gene    764  1486      +  Name=COX3 gene  COX3  1125.0    723    764   1486      0
2   NC_016117  Geneious     gene   1486  1809      +   Name=ND3 gene   ND3  1647.5    324   1486   1809      0
3   NC_016117  Geneious     gene   1813  2388      +  Name=COX2 gene  COX2  2100.5    576   1813   2388      0
4   NC_016117  Geneious     rRNA   2392  2759      +   Name=12S rRNA   12S  2575.5    368   2392   2759      0
5   NC_016117  Geneious     rRNA   2760  3637      +   Name=16S rRNA   16S  3198.5    878   2760   3637      0
6   NC_016117  Geneious     gene   3638  4729      +   Name=ND4 gene   ND4  4183.5   1092   3638   4729      0
7   NC_016117  Geneious     gene   4734  5456      +   Name=ND2 gene   ND2  5095.0    723   4734   5456      0
8   NC_016117  Geneious     gene   5460  5654      +  Name=ND4L gene  ND4L  5557.0    195   5460   5654      0
9   NC_016117  Geneious     gene   5766  7169      +   Name=ND5 gene   ND5  6467.5   1404   5766   7169      0
10  NC_016117  Geneious     gene   7172  8038      +   Name=ND1 gene   ND1  7605.0    867   7172   8038      0
11  NC_016117  Geneious     gene   8014  9096      +  Name=CYTB gene  CYTB  8555.0   1083   8014   9096      0
12  NC_016117  Geneious     gene   9086  9286      +   Name=ND6 gene   ND6  9186.0    201   9086   9286      0
len plottable 13
 - i,j are currently: 0,1
stop: 760. start: 764.
    - putting elements 0 through (including) 1 together
   index   sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0      0  NC_016117  Geneious     gene   -760   760      +  Name=COX1 gene  COX1     0.0   1521   -760    760      0
 - i,j are currently: 1,1
stop: 1486. start: 1486.
    - putting elements 1 through (including) 2 together
   index   sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0      1  NC_016117  Geneious     gene    764  1486      +  Name=COX3 gene  COX3  1125.0    723    764   1486      0
 - i,j are currently: 2,1
stop: 1809. start: 1813.
    - putting elements 2 through (including) 3 together
   index   sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      2  NC_016117  Geneious     gene   1486  1809      +  Name=ND3 gene  ND3  1647.5    324   1486   1809      0
 - i,j are currently: 3,1
stop: 2388. start: 2392.
    - putting elements 3 through (including) 4 together
   index   sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0      3  NC_016117  Geneious     gene   1813  2388      +  Name=COX2 gene  COX2  2100.5    576   1813   2388      0
 - i,j are currently: 4,1
stop: 2759. start: 2760.
    - putting elements 4 through (including) 5 together
   index   sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      4  NC_016117  Geneious     rRNA   2392  2759      +  Name=12S rRNA  12S  2575.5    368   2392   2759      0
 - i,j are currently: 5,1
stop: 3637. start: 3638.
    - putting elements 5 through (including) 6 together
   index   sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      5  NC_016117  Geneious     rRNA   2760  3637      +  Name=16S rRNA  16S  3198.5    878   2760   3637      0
 - i,j are currently: 6,1
stop: 4729. start: 4734.
    - putting elements 6 through (including) 7 together
   index   sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      6  NC_016117  Geneious     gene   3638  4729      +  Name=ND4 gene  ND4  4183.5   1092   3638   4729      0
 - i,j are currently: 7,1
stop: 5456. start: 5460.
    - putting elements 7 through (including) 8 together
   index   sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      7  NC_016117  Geneious     gene   4734  5456      +  Name=ND2 gene  ND2  5095.0    723   4734   5456      0
 - i,j are currently: 8,1
stop: 5654. start: 5766.
    - putting elements 8 through (including) 9 together
   index   sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0      8  NC_016117  Geneious     gene   5460  5654      +  Name=ND4L gene  ND4L  5557.0    195   5460   5654      0
 - i,j are currently: 9,1
stop: 7169. start: 7172.
    - putting elements 9 through (including) 10 together
   index   sequence    source featType  start  stop strand           tags name  center  width  lmost  rmost  track
0      9  NC_016117  Geneious     gene   5766  7169      +  Name=ND5 gene  ND5  6467.5   1404   5766   7169      0
 - i,j are currently: 10,1
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 - i,j are currently: 10,2
stop: 8038. start: 9086.
    - putting elements 10 through (including) 12 together
   index   sequence    source featType  start  stop strand            tags  name  center  width  lmost  rmost  track
0     10  NC_016117  Geneious     gene   7172  8038      +   Name=ND1 gene   ND1  7605.0    867   7172   8038      0
1     11  NC_016117  Geneious     gene   8014  9096      +  Name=CYTB gene  CYTB  8555.0   1083   8014   9096      0
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stop: 9096. start: 9086.
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0     11  NC_016117  Geneious     gene   8014  9096      +  Name=CYTB gene  CYTB  8555.0   1083   8014   9096      0
1     12  NC_016117  Geneious     gene   9086  9286      +   Name=ND6 gene   ND6  9186.0    201   9086   9286      0
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       [ 4.734e+03, -2.700e-01],
       [ 4.734e+03,  2.700e-01]]), array([ 1,  2,  2,  2,  2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((4734, 0.27) ...)
length of myPatches is: 8
normal path is: Path(array([[ 5.460e+03,  2.700e-01],
       [ 5.574e+03,  2.700e-01],
       [ 5.654e+03,  0.000e+00],
       [ 5.574e+03, -2.700e-01],
       [ 5.460e+03, -2.700e-01],
       [ 5.460e+03,  2.700e-01]]), array([ 1,  2,  2,  2,  2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((5460, 0.27) ...)
length of myPatches is: 9
normal path is: Path(array([[ 5.766e+03,  2.700e-01],
       [ 7.089e+03,  2.700e-01],
       [ 7.169e+03,  0.000e+00],
       [ 7.089e+03, -2.700e-01],
       [ 5.766e+03, -2.700e-01],
       [ 5.766e+03,  2.700e-01]]), array([ 1,  2,  2,  2,  2, 79], dtype=uint8))
there are 1 patches after gffplot_feature_hori
PathPatch6((5766, 0.27) ...)
length of myPatches is: 10
im in here feat len=2
plotting lff
plotting rff
there are 2 patches after gffplot_feature_hori
PathPatch6((7172, 0.27) ...)
length of myPatches is: 11
there are 2 patches after gffplot_feature_hori
PathPatch7((8014, 0.27) ...)
length of myPatches is: 12
im in here feat len=2
plotting lff
plotting rff
there are 2 patches after gffplot_feature_hori
PathPatch6((8014, 0.27) ...)
length of myPatches is: 13
there are 2 patches after gffplot_feature_hori
PathPatch7((9086, 0.27) ...)
length of myPatches is: 14
There are 14 patches at the end of gffplot_horizontal()
ok

----------------------------------------------------------------------
Ran 1 test in 37.896s

OK

The return code is:  0
make[1]: Leaving directory '/build/reproducible-path/python-pauvre-0.2.3'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   dh_auto_install --destdir=debian/python3-pauvre/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre 
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
running egg_info
writing pauvre.egg-info/PKG-INFO
writing dependency_links to pauvre.egg-info/dependency_links.txt
writing entry points to pauvre.egg-info/entry_points.txt
writing requirements to pauvre.egg-info/requires.txt
writing top-level names to pauvre.egg-info/top_level.txt
reading manifest file 'pauvre.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pauvre.egg-info/SOURCES.txt'
running install_lib
creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/gfftools.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/functions.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/rcparams.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/synplot.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__
creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi
creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/T.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/helper.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/Q.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/lsi.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/Q.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/T.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/helper.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/lsi.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/test.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi
creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests
creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/__pycache__/test_synplot.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/__pycache__
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/test_synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/bamparse.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/custommargin.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/marginplot.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/pauvre_main.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/rcparams.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/redwood.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/stats.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/version.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/browser.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/gfftools.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/Q.py to Q.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/T.py to T.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/helper.py to helper.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/lsi.py to lsi.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/test.py to test.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/test_synplot.py to test_synplot.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/bamparse.py to bamparse.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/custommargin.py to custommargin.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/marginplot.py to marginplot.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/pauvre_main.py to pauvre_main.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/rcparams.py to rcparams.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/redwood.py to redwood.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/stats.py to stats.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/version.py to version.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/browser.py to browser.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/functions.py to functions.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/gfftools.py to gfftools.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/synplot.py to synplot.cpython-313.pyc
running install_egg_info
Copying pauvre.egg-info to /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre-0.2.3.egg-info
Skipping SOURCES.txt
running install_scripts
Installing pauvre script to /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/bin
   dh_installdocs -O--buildsystem=pybuild
   dh_installchangelogs -O--buildsystem=pybuild
   debian/rules override_dh_installexamples
make[1]: Entering directory '/build/reproducible-path/python-pauvre-0.2.3'
# Do not install test script in Python lib
find debian -name scripts -type d | xargs rm -rf
dh_installexamples
sed -i 's/^git clone/#&/' `find debian -name test.sh`
make[1]: Leaving directory '/build/reproducible-path/python-pauvre-0.2.3'
   dh_installman -O--buildsystem=pybuild
   dh_python3 -O--buildsystem=pybuild
   dh_installsystemduser -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
   dh_fixperms -O--buildsystem=pybuild
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
   dh_gencontrol -O--buildsystem=pybuild
   dh_md5sums -O--buildsystem=pybuild
   dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pauvre' in '../python3-pauvre_0.2.3-4_all.deb'.
 dpkg-genbuildinfo --build=binary -O../python-pauvre_0.2.3-4_arm64.buildinfo
 dpkg-genchanges --build=binary -O../python-pauvre_0.2.3-4_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/3909324 and its subdirectories
I: Current time: Mon Mar  9 05:51:30 +14 2026
I: pbuilder-time-stamp: 1772985090