I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 9 05:48:36 +14 2026 I: pbuilder-time-stamp: 1772984916 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pauvre_0.2.3-4.dsc] I: copying [./python-pauvre_0.2.3.orig.tar.gz] I: copying [./python-pauvre_0.2.3-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-4.dsc: unsupported subcommand dpkg-source: info: extracting python-pauvre in python-pauvre-0.2.3 dpkg-source: info: unpacking python-pauvre_0.2.3.orig.tar.gz dpkg-source: info: unpacking python-pauvre_0.2.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying lsi-test-args.patch dpkg-source: info: applying biopython-1.80.patch dpkg-source: info: applying pandas-2.0.patch dpkg-source: info: applying syntaxwarning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 8 15:48 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=67b8e97c711a4e7a80d798206bc501e8 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3909324 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TlbmLr9B/pbuilderrc_eQvS --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TlbmLr9B/b2 --logfile b2/build.log python-pauvre_0.2.3-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib, python3-biopython, python3-pandas, python3-numpy, python3-scipy, python3-sklearn, python3-tk, python3-progressbar dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19920 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-progressbar; however: Package python3-progressbar is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-progressbar{a} python3-pyparsing{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-zipp{a} python3.12-tk{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx ncbi-blast+ psmisc python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-pytest python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 161 newly installed, 0 to remove and 0 not upgraded. Need to get 126 MB of archives. After unpacking 597 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-3+b1 [852 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-3+b1 [1987 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-1 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-3+b1 [1913 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-3+b1 [740 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-2 [91.5 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.46-4 [276 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 44 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 64 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.3-1 [190 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-attr all 24.3.0-1 [68.8 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.2+ds-2 [135 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.2+ds-2 [4129 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3.12-tk arm64 3.12.8-5+b1 [111 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.1-3+b1 [102 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.1-1 [9464 B] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 11.1.0-4 [81.6 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.1.0-4 [515 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.85+dfsg-1 [1663 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.2-1 [31.0 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-6 [95.1 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.0-1+b1 [1433 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.14.1-4 [18.5 MB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-unicodedata2 arm64 15.1.0+ds-1+b4 [298 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.55.3-2 [1501 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-joblib all 1.3.2-6 [216 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-3 [71.5 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.8.3-3+b2 [5583 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-7 [6029 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-7 [3097 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-progressbar all 2.5-4 [10.8 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-7+b1 [5397 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-sklearn all 1.4.2+dfsg-7 [2248 kB] Fetched 126 MB in 0s (255 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.1-3+b1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.1-3+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3+b1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.1-3+b1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3+b1_arm64.deb ... Unpacking python3.13 (3.13.1-3+b1) ... 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Unpacking libfontenc1:arm64 (1:1.1.8-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../026-x11-common_1%3a7.7+24_all.deb ... Unpacking x11-common (1:7.7+24) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../027-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../028-xfonts-utils_1%3a7.7+7_arm64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../029-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../030-fontconfig-config_2.15.0-2_arm64.deb ... Unpacking fontconfig-config (2.15.0-2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../031-libfontconfig1_2.15.0-2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-2) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../032-libxau6_1%3a1.0.11-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../033-libxdmcp6_1%3a1.1.5-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../034-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../035-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../036-libx11-6_2%3a1.8.10-2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.10-2) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../037-libxrender1_1%3a0.9.10-1.1+b4_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1+b4) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../038-libxft2_2.3.6-1+b4_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b4) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../039-libxext6_2%3a1.3.4-1+b3_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../040-libxss1_1%3a1.2.3-1+b3_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../041-libtk8.6_8.6.16-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.16-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../042-tk8.6-blt2.5_2.5.3+dfsg-7+b1_arm64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Selecting previously unselected package blt. Preparing to unpack .../043-blt_2.5.3+dfsg-7+b1_arm64.deb ... 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Setting up libdeflate0:arm64 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b2) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Mar 8 15:49:03 UTC 2026. Universal Time is now: Sun Mar 8 15:49:03 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.16-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up libproc2-0:arm64 (2:4.0.4-7) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.46-4) ... Setting up python3-numpy-dev:arm64 (1:2.2.2+ds-2) ... Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:arm64 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libopenjp2-7:arm64 (2.5.3-1) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up liblapack3:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-3) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:arm64 (2.82.4-2) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3+b1) ... Setting up libpython3-stdlib:arm64 (3.13.1-2) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Setting up libxft2:arm64 (2.3.6-1+b4) ... Setting up python3.13 (3.13.1-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.16-1) ... Setting up python3.12-tk (3.12.8-5+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.2-2) ... Setting up python3.13-tk (3.13.1-3+b1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-tz (2024.2-1) ... Setting up python3-fs (2.4.16-6) ... Setting up python3-progressbar (2.5-4) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up libraqm0:arm64 (0.10.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.2+ds-2) ... Setting up python3-lxml:arm64 (5.3.0-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-contourpy (1.3.1-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Setting up python3-scipy (1.14.1-4) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-joblib (1.3.2-6) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b4) ... Setting up blt (2.5.3+dfsg-7+b1) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-7) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-7+b1) ... Setting up python3-tk:arm64 (3.13.1-1) ... Setting up debhelper (13.24.1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:arm64 (11.1.0-4) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-7) ... Setting up python3-pil.imagetk:arm64 (11.1.0-4) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-sklearn (1.4.2+dfsg-7) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up dh-python (6.20250108) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-fonttools (4.55.3-2) ... Setting up python3-matplotlib (3.8.3-3+b2) ... Processing triggers for libc-bin (2.40-6) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-pauvre-0.2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pauvre_0.2.3-4_source.changes dpkg-buildpackage: info: source package python-pauvre dpkg-buildpackage: info: source version 0.2.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/gfftools.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/functions.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/browser.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/version.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/stats.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/redwood.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/rcparams.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/pauvre_main.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/marginplot.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/custommargin.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/bamparse.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre copying pauvre/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre creating /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests copying pauvre/tests/test_synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests copying pauvre/tests/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests creating /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi copying pauvre/lsi/test.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi copying pauvre/lsi/lsi.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi copying pauvre/lsi/helper.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi copying pauvre/lsi/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi copying pauvre/lsi/T.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi copying pauvre/lsi/Q.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi running egg_info creating pauvre.egg-info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt writing manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pauvre-0.2.3' PYBUILDDIR="$(echo "/build/reproducible-path/python-pauvre-0.2.3"/.pybuild/cpython3_3.*/build)" \ && mkdir -p "${PYBUILDDIR}/pauvre/tests/testdata/alignments" \ "${PYBUILDDIR}/pauvre/tests/testresults" \ && cp -r "/build/reproducible-path/python-pauvre-0.2.3/debian/tests/gff_files" \ "${PYBUILDDIR}/pauvre/tests/testdata" \ && BUILDDIR="${PYBUILDDIR}" PATH="/build/reproducible-path/python-pauvre-0.2.3/debian/bin:$PATH" \ dh_auto_test \ && rm "${PYBUILDDIR}/input" \ && rm -r "${PYBUILDDIR}/pauvre/tests/testdata" \ "${PYBUILDDIR}/pauvre/tests/testresults" I: pybuild base:311: cd /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build; python3.13 -m unittest discover -v test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case.test_normal_plotting_scenario) This verifies that the LibSeq class is constructed with all of the ... + export PYTHONPATH=/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build + PYTHONPATH=/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build + exec python3 /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/pauvre_main.py synplot --aln_dir /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/alignments/ --fileform pdf --gff_paths /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff --center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi' /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:106: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead self.seqlen = int(self.features.loc[self.features['tags'] == "Is_circular=true", 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:106: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead self.seqlen = int(self.features.loc[self.features['tags'] == "Is_circular=true", 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:106: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead self.seqlen = int(self.features.loc[self.features['tags'] == "Is_circular=true", 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) 0% | | /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:207: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead this_x = float(self.features.loc[self.features['name'] /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py:209: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead other_x = float(othermatch) # /other_GFF.seqlen 1% | | 2% |# | 3% |## | 4% |## | 5% |### | 6% |#### | 7% |##### | 8% |##### | 9% |###### | 10% |####### | 11% |######## | 12% |######## | 13% |######### | 14% |########## | 15% |########### | 16% |########### | 17% |############ | 18% |############# | 19% |############# | 20% |############## | 21% |############### | 22% |################ | 23% |################ | 24% |################# | 25% |################## | 26% |################### | 27% |################### | 28% |#################### | 29% |##################### | 30% |###################### | 31% |###################### | 32% |####################### | 33% |######################## | 34% |######################### | 35% |######################### | 36% |########################## | 37% |########################### | 38% |########################### | 39% |############################ | 40% |############################# | 41% |############################## | 42% |############################## | 43% |############################### | 44% |################################ | 45% |################################# | 47% |################################# | 48% |################################## | 49% |################################### | 50% |#################################### | 51% |#################################### | 52% |##################################### | 53% |###################################### | 54% |####################################### | 55% |####################################### | 56% |######################################## | 57% |######################################### | 58% |######################################### | 59% |########################################## | 60% |########################################### | 61% |############################################ | 62% |############################################ | 63% |############################################# | 64% |############################################## | 65% |############################################### | 66% |############################################### | 67% |################################################ | 68% |################################################# | 69% |################################################## | 70% |################################################## | 71% |################################################### | 72% |#################################################### | 73% |#################################################### | 74% |##################################################### | 75% |###################################################### | 76% |####################################################### | 77% |####################################################### | 78% |######################################################## | 79% |######################################################### | 80% |########################################################## | 81% |########################################################## | 82% |########################################################### | 83% |############################################################ | 84% |############################################################# | 85% |############################################################# | 86% |############################################################## | 87% |############################################################### | 88% |################################################################ | 89% |################################################################ | 90% |################################################################# | 91% |################################################################## | 93% |################################################################## | 94% |################################################################### | 95% |#################################################################### | 96% |##################################################################### | 97% |##################################################################### | 98% |###################################################################### | 99% |####################################################################### | 100% |########################################################################| /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py:519: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead x_offset = -1 * int(gff.features.loc[gff.features['name'] == args.center_on, 'center']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py:519: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead x_offset = -1 * int(gff.features.loc[gff.features['name'] == args.center_on, 'center']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py:519: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead x_offset = -1 * int(gff.features.loc[gff.features['name'] == args.center_on, 'center']) - Setting tick labels. /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py:564: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator. panel0.set_xticklabels(empty_string_labels) - Running print_images. Line sweep results: TIME ELAPSED: 0.0006606578826904297 N^2 comparison results: 0 TIME ELAPSED: 0.00037550926208496094 6 6 The data is: Namespace(command='synplot', QUIET=False, aln_dir='/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/alignments', center_on='COX1', dpi=600, fileform=['pdf'], gff_paths=['/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff', '/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff', '/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff'], gff_labels=['B. forskalii', 'P. bachei', 'M. leidyi'], no_timestamp=False, optimum_order=False, BASENAME=None, ratio=None, sandwich=False, start_with_aligned_genes=False, stop_codons=True, transparent=True, func=) The best gene combination is [0, 1, 2] new fewest global intersections: 42 new fewest global intersections: 40 new fewest global intersections: 38 new fewest global intersections: 34 new fewest global intersections: 32 getting alignments file list is: {} done getting alignments seqs_dict is: {} sequence source featType start stop strand tags name center width lmost rmost track 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 len plottable 15 - i,j are currently: 0,1 stop: -782. start: -760. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 - i,j are currently: 1,1 stop: 761. start: 1119. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 - i,j are currently: 2,1 stop: 1495. start: 1495. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 - i,j are currently: 3,1 stop: 2355. start: 2338. - i,j are currently: 3,2 stop: 2355. start: 2547. - putting elements 3 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 1 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 4,1 stop: 2539. start: 2547. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 5,1 stop: 3288. start: 3563. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 - i,j are currently: 6,1 stop: 3935. start: 3938. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 - i,j are currently: 7,1 stop: 5018. start: 5020. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 - i,j are currently: 8,1 stop: 5206. start: 5220. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 - i,j are currently: 9,1 stop: 6696. start: 6847. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 - i,j are currently: 10,1 stop: 7909. start: 8439. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 - i,j are currently: 11,1 stop: 9105. start: 9255. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 - i,j are currently: 12,1 stop: 9981. start: 10102. - putting elements 12 through (including) 13 together index sequence source featType start stop strand tags name center width lmost rmost track 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 - i,j are currently: 13,1 stop: 11155. start: 11076. index sequence source featType start stop strand tags name center width lmost rmost track 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 1 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 normal path is: Path(array([[-1342. , 2.27], [ -862. , 2.27], [ -782. , 2. ], [ -862. , 1.73], [-1342. , 1.73], [-1342. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-1342, 2.27) ...) length of myPatches is: 1 normal path is: Path(array([[-760. , 2.27], [ 681. , 2.27], [ 761. , 2. ], [ 681. , 1.73], [-760. , 1.73], [-760. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 2.27) ...) length of myPatches is: 2 normal path is: Path(array([[1119. , 2.27], [1415. , 2.27], [1495. , 2. ], [1415. , 1.73], [1119. , 1.73], [1119. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1119, 2.27) ...) length of myPatches is: 3 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((1495, 2.27) ...) length of myPatches is: 4 there are 2 patches after gffplot_feature_hori PathPatch7((2338, 2.27) ...) length of myPatches is: 5 normal path is: Path(array([[2.338e+03, 2.270e+00], [2.459e+03, 2.270e+00], [2.539e+03, 2.000e+00], [2.459e+03, 1.730e+00], [2.338e+03, 1.730e+00], [2.338e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2338, 2.27) ...) length of myPatches is: 6 normal path is: Path(array([[2.547e+03, 2.270e+00], [3.208e+03, 2.270e+00], [3.288e+03, 2.000e+00], [3.208e+03, 1.730e+00], [2.547e+03, 1.730e+00], [2.547e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2547, 2.27) ...) length of myPatches is: 7 normal path is: Path(array([[3.563e+03, 2.270e+00], [3.855e+03, 2.270e+00], [3.935e+03, 2.000e+00], [3.855e+03, 1.730e+00], [3.563e+03, 1.730e+00], [3.563e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3563, 2.27) ...) length of myPatches is: 8 normal path is: Path(array([[3.938e+03, 2.270e+00], [4.938e+03, 2.270e+00], [5.018e+03, 2.000e+00], [4.938e+03, 1.730e+00], [3.938e+03, 1.730e+00], [3.938e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3938, 2.27) ...) length of myPatches is: 9 normal path is: Path(array([[5.020e+03, 2.270e+00], [5.126e+03, 2.270e+00], [5.206e+03, 2.000e+00], [5.126e+03, 1.730e+00], [5.020e+03, 1.730e+00], [5.020e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5020, 2.27) ...) length of myPatches is: 10 normal path is: Path(array([[5.220e+03, 2.270e+00], [6.616e+03, 2.270e+00], [6.696e+03, 2.000e+00], [6.616e+03, 1.730e+00], [5.220e+03, 1.730e+00], [5.220e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5220, 2.27) ...) length of myPatches is: 11 normal path is: Path(array([[6.847e+03, 2.270e+00], [7.829e+03, 2.270e+00], [7.909e+03, 2.000e+00], [7.829e+03, 1.730e+00], [6.847e+03, 1.730e+00], [6.847e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6847, 2.27) ...) length of myPatches is: 12 normal path is: Path(array([[8.439e+03, 2.270e+00], [9.025e+03, 2.270e+00], [9.105e+03, 2.000e+00], [9.025e+03, 1.730e+00], [8.439e+03, 1.730e+00], [8.439e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8439, 2.27) ...) length of myPatches is: 13 normal path is: Path(array([[9.255e+03, 2.270e+00], [9.901e+03, 2.270e+00], [9.981e+03, 2.000e+00], [9.901e+03, 1.730e+00], [9.255e+03, 1.730e+00], [9.255e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9255, 2.27) ...) length of myPatches is: 14 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((10102, 2.27) ...) length of myPatches is: 15 there are 2 patches after gffplot_feature_hori PathPatch7((11076, 2.27) ...) length of myPatches is: 16 There are 16 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 len plottable 13 - i,j are currently: 0,1 stop: 768. start: 892. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 - i,j are currently: 1,1 stop: 1470. start: 1750. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 - i,j are currently: 2,1 stop: 2692. start: 2723. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 - i,j are currently: 3,1 stop: 3285. start: 3286. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 - i,j are currently: 4,1 stop: 4023. start: 4034. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 - i,j are currently: 5,1 stop: 4699. start: 4753. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 - i,j are currently: 6,1 stop: 5070. start: 5074. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 - i,j are currently: 7,1 stop: 6141. start: 6306. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 - i,j are currently: 8,1 stop: 7385. start: 7390. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 - i,j are currently: 9,1 stop: 8901. start: 8904. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 - i,j are currently: 10,1 stop: 9740. start: 9743. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 - i,j are currently: 11,1 stop: 9937. start: 10035. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 index sequence source featType start stop strand tags name center width lmost rmost track 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 normal path is: Path(array([[-7.67e+02, 1.27e+00], [ 6.88e+02, 1.27e+00], [ 7.68e+02, 1.00e+00], [ 6.88e+02, 7.30e-01], [-7.67e+02, 7.30e-01], [-7.67e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-767, 1.27) ...) length of myPatches is: 1 normal path is: Path(array([[8.92e+02, 1.27e+00], [1.39e+03, 1.27e+00], [1.47e+03, 1.00e+00], [1.39e+03, 7.30e-01], [8.92e+02, 7.30e-01], [8.92e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((892, 1.27) ...) length of myPatches is: 2 normal path is: Path(array([[1.750e+03, 1.270e+00], [2.612e+03, 1.270e+00], [2.692e+03, 1.000e+00], [2.612e+03, 7.300e-01], [1.750e+03, 7.300e-01], [1.750e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1750, 1.27) ...) length of myPatches is: 3 normal path is: Path(array([[2.723e+03, 1.270e+00], [3.205e+03, 1.270e+00], [3.285e+03, 1.000e+00], [3.205e+03, 7.300e-01], [2.723e+03, 7.300e-01], [2.723e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2723, 1.27) ...) length of myPatches is: 4 normal path is: Path(array([[3.286e+03, 1.270e+00], [3.943e+03, 1.270e+00], [4.023e+03, 1.000e+00], [3.943e+03, 7.300e-01], [3.286e+03, 7.300e-01], [3.286e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3286, 1.27) ...) length of myPatches is: 5 normal path is: Path(array([[4.034e+03, 1.270e+00], [4.619e+03, 1.270e+00], [4.699e+03, 1.000e+00], [4.619e+03, 7.300e-01], [4.034e+03, 7.300e-01], [4.034e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4034, 1.27) ...) length of myPatches is: 6 normal path is: Path(array([[4.753e+03, 1.270e+00], [4.990e+03, 1.270e+00], [5.070e+03, 1.000e+00], [4.990e+03, 7.300e-01], [4.753e+03, 7.300e-01], [4.753e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4753, 1.27) ...) length of myPatches is: 7 normal path is: Path(array([[5.074e+03, 1.270e+00], [6.061e+03, 1.270e+00], [6.141e+03, 1.000e+00], [6.061e+03, 7.300e-01], [5.074e+03, 7.300e-01], [5.074e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5074, 1.27) ...) length of myPatches is: 8 normal path is: Path(array([[6.306e+03, 1.270e+00], [7.305e+03, 1.270e+00], [7.385e+03, 1.000e+00], [7.305e+03, 7.300e-01], [6.306e+03, 7.300e-01], [6.306e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6306, 1.27) ...) length of myPatches is: 9 normal path is: Path(array([[7.390e+03, 1.270e+00], [8.821e+03, 1.270e+00], [8.901e+03, 1.000e+00], [8.821e+03, 7.300e-01], [7.390e+03, 7.300e-01], [7.390e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((7390, 1.27) ...) length of myPatches is: 10 normal path is: Path(array([[8.904e+03, 1.270e+00], [9.660e+03, 1.270e+00], [9.740e+03, 1.000e+00], [9.660e+03, 7.300e-01], [8.904e+03, 7.300e-01], [8.904e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8904, 1.27) ...) length of myPatches is: 11 normal path is: Path(array([[9.743e+03, 1.270e+00], [9.857e+03, 1.270e+00], [9.937e+03, 1.000e+00], [9.857e+03, 7.300e-01], [9.743e+03, 7.300e-01], [9.743e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9743, 1.27) ...) length of myPatches is: 12 normal path is: Path(array([[1.0035e+04, 1.2700e+00], [1.0152e+04, 1.2700e+00], [1.0232e+04, 1.0000e+00], [1.0152e+04, 7.3000e-01], [1.0035e+04, 7.3000e-01], [1.0035e+04, 1.2700e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((10035, 1.27) ...) length of myPatches is: 13 There are 13 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 len plottable 13 - i,j are currently: 0,1 stop: 760. start: 764. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 - i,j are currently: 1,1 stop: 1486. start: 1486. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 - i,j are currently: 2,1 stop: 1809. start: 1813. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 - i,j are currently: 3,1 stop: 2388. start: 2392. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 - i,j are currently: 4,1 stop: 2759. start: 2760. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 - i,j are currently: 5,1 stop: 3637. start: 3638. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 - i,j are currently: 6,1 stop: 4729. start: 4734. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 - i,j are currently: 7,1 stop: 5456. start: 5460. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 - i,j are currently: 8,1 stop: 5654. start: 5766. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 - i,j are currently: 9,1 stop: 7169. start: 7172. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 - i,j are currently: 10,1 stop: 8038. start: 8014. - i,j are currently: 10,2 stop: 8038. start: 9086. - putting elements 10 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 1 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 - i,j are currently: 11,1 stop: 9096. start: 9086. index sequence source featType start stop strand tags name center width lmost rmost track 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 1 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 normal path is: Path(array([[-7.6e+02, 2.7e-01], [ 6.8e+02, 2.7e-01], [ 7.6e+02, 0.0e+00], [ 6.8e+02, -2.7e-01], [-7.6e+02, -2.7e-01], [-7.6e+02, 2.7e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 0.27) ...) length of myPatches is: 1 normal path is: Path(array([[ 7.640e+02, 2.700e-01], [ 1.406e+03, 2.700e-01], [ 1.486e+03, 0.000e+00], [ 1.406e+03, -2.700e-01], [ 7.640e+02, -2.700e-01], [ 7.640e+02, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((764, 0.27) ...) length of myPatches is: 2 normal path is: Path(array([[ 1.486e+03, 2.700e-01], [ 1.729e+03, 2.700e-01], [ 1.809e+03, 0.000e+00], [ 1.729e+03, -2.700e-01], [ 1.486e+03, -2.700e-01], [ 1.486e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1486, 0.27) ...) length of myPatches is: 3 normal path is: Path(array([[ 1.813e+03, 2.700e-01], [ 2.308e+03, 2.700e-01], [ 2.388e+03, 0.000e+00], [ 2.308e+03, -2.700e-01], [ 1.813e+03, -2.700e-01], [ 1.813e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1813, 0.27) ...) length of myPatches is: 4 normal path is: Path(array([[ 2.392e+03, 2.700e-01], [ 2.679e+03, 2.700e-01], [ 2.759e+03, 0.000e+00], [ 2.679e+03, -2.700e-01], [ 2.392e+03, -2.700e-01], [ 2.392e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2392, 0.27) ...) length of myPatches is: 5 normal path is: Path(array([[ 2.760e+03, 2.700e-01], [ 3.557e+03, 2.700e-01], [ 3.637e+03, 0.000e+00], [ 3.557e+03, -2.700e-01], [ 2.760e+03, -2.700e-01], [ 2.760e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2760, 0.27) ...) length of myPatches is: 6 normal path is: Path(array([[ 3.638e+03, 2.700e-01], [ 4.649e+03, 2.700e-01], [ 4.729e+03, 0.000e+00], [ 4.649e+03, -2.700e-01], [ 3.638e+03, -2.700e-01], [ 3.638e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3638, 0.27) ...) length of myPatches is: 7 normal path is: Path(array([[ 4.734e+03, 2.700e-01], [ 5.376e+03, 2.700e-01], [ 5.456e+03, 0.000e+00], [ 5.376e+03, -2.700e-01], [ 4.734e+03, -2.700e-01], [ 4.734e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4734, 0.27) ...) length of myPatches is: 8 normal path is: Path(array([[ 5.460e+03, 2.700e-01], [ 5.574e+03, 2.700e-01], [ 5.654e+03, 0.000e+00], [ 5.574e+03, -2.700e-01], [ 5.460e+03, -2.700e-01], [ 5.460e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5460, 0.27) ...) length of myPatches is: 9 normal path is: Path(array([[ 5.766e+03, 2.700e-01], [ 7.089e+03, 2.700e-01], [ 7.169e+03, 0.000e+00], [ 7.089e+03, -2.700e-01], [ 5.766e+03, -2.700e-01], [ 5.766e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5766, 0.27) ...) length of myPatches is: 10 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((7172, 0.27) ...) length of myPatches is: 11 there are 2 patches after gffplot_feature_hori PathPatch7((8014, 0.27) ...) length of myPatches is: 12 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((8014, 0.27) ...) length of myPatches is: 13 there are 2 patches after gffplot_feature_hori PathPatch7((9086, 0.27) ...) length of myPatches is: 14 There are 14 patches at the end of gffplot_horizontal() ok ---------------------------------------------------------------------- Ran 1 test in 37.896s OK The return code is: 0 make[1]: Leaving directory '/build/reproducible-path/python-pauvre-0.2.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pauvre/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/gfftools.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/functions.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/rcparams.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/synplot.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__pycache__ creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/T.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/helper.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/Q.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/lsi.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/Q.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/T.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/helper.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/lsi.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/lsi/test.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/__pycache__/test_synplot.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/tests/test_synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/bamparse.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/custommargin.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/marginplot.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/pauvre_main.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/rcparams.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/redwood.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/stats.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/version.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/browser.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/functions.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/gfftools.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.13_pauvre/build/pauvre/synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/Q.py to Q.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/T.py to T.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/helper.py to helper.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/lsi.py to lsi.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/lsi/test.py to test.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/tests/test_synplot.py to test_synplot.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/bamparse.py to bamparse.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/custommargin.py to custommargin.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/marginplot.py to marginplot.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/pauvre_main.py to pauvre_main.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/rcparams.py to rcparams.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/redwood.py to redwood.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/stats.py to stats.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/browser.py to browser.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/functions.py to functions.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/gfftools.py to gfftools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre/synplot.py to synplot.cpython-313.pyc running install_egg_info Copying pauvre.egg-info to /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.13/dist-packages/pauvre-0.2.3.egg-info Skipping SOURCES.txt running install_scripts Installing pauvre script to /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/python-pauvre-0.2.3' # Do not install test script in Python lib find debian -name scripts -type d | xargs rm -rf dh_installexamples sed -i 's/^git clone/#&/' `find debian -name test.sh` make[1]: Leaving directory '/build/reproducible-path/python-pauvre-0.2.3' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pauvre' in '../python3-pauvre_0.2.3-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pauvre_0.2.3-4_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pauvre_0.2.3-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3909324/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3909324 and its subdirectories I: Current time: Mon Mar 9 05:51:30 +14 2026 I: pbuilder-time-stamp: 1772985090