I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 11 08:22:31 +14 2024 I: pbuilder-time-stamp: 1733854951 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cobra_0.29.1-1.dsc] I: copying [./python-cobra_0.29.1.orig.tar.gz] I: copying [./python-cobra_0.29.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Sep 22 13:24:18 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cobra_0.29.1-1.dsc: no acceptable signature found dpkg-source: info: extracting python-cobra in python-cobra-0.29.1 dpkg-source: info: unpacking python-cobra_0.29.1.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.29.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying xfail_test_show_versions.patch dpkg-source: info: applying ignore_tests.patch dpkg-source: info: applying 32-bit-test.patch dpkg-source: info: applying no_future_dependency.patch dpkg-source: info: applying remove-appdirs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3515831/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 10 18:22 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3515831/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3515831/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=025b9cc9dfac4e80a329f655a3961045 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3515831 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.S0d966xA/pbuilderrc_ZCQf --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.S0d966xA/b2 --logfile b2/build.log python-cobra_0.29.1-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3515831/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5-dev, python3-matplotlib, python3-platformdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20082 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-resources; however: Package python3-importlib-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang (>= 1.7.0-1~); however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 5.0.8-1~); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5-dev; however: Package libsbml5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-platformdirs; however: Package python3-platformdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd3{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbtf2{a} libcamd3{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcxsparse4{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldl3{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libparu1{a} libpipeline1{a} libpng16-16t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} librbio4{a} libreadline8t64{a} libsbml5-dev{a} libsbml5t64{a} libsharpyuv0{a} libspex3{a} libspqr4{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libumfpack6{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-annotated-types{a} python3-anyio{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-dnspython{a} python3-email-validator{a} python3-fonttools{a} python3-fs{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-importlib-resources{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-benchmark{a} python3-pytest-mock{a} python3-referencing{a} python3-requests{a} python3-rich{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-scipy{a} python3-setuptools{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgraphblas-dev libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cryptography python3-cssselect python3-elasticsearch python3-freezegun python3-graphviz python3-h2 python3-html5lib python3-jinja2 python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pygal python3-rfc3987 python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 141 MB of archives. After unpacking 724 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.8-1 [808 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.8-1 [1930 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2~rc1-2 [23.7 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.8-1 [1905 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.8-1 [677 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-6 [1130 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-12 [91.4 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 68 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-importlib-resources all 6.4.5-1 [23.1 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 84 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-2 [23.7 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libamd3 arm64 1:7.8.3+dfsg-2 [38.1 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.0-4 [106 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libbtf2 arm64 1:7.8.3+dfsg-2 [24.3 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libcamd3 arm64 1:7.8.3+dfsg-2 [35.2 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libccolamd3 arm64 1:7.8.3+dfsg-2 [37.7 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-2 [31.5 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-9 [361 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libcholmod5 arm64 1:7.8.3+dfsg-2 [536 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libcxsparse4 arm64 1:7.8.3+dfsg-2 [75.9 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.3-1 [1412 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.4.7-8 [392 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libglpk40 arm64 5.0-1+b2 [346 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libklu2 arm64 1:7.8.3+dfsg-2 [82.1 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libldl3 arm64 1:7.8.3+dfsg-2 [24.2 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libsuitesparse-mongoose3 arm64 1:7.8.3+dfsg-2 [44.1 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libumfpack6 arm64 1:7.8.3+dfsg-2 [228 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 librbio4 arm64 1:7.8.3+dfsg-2 [38.2 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libspqr4 arm64 1:7.8.3+dfsg-2 [127 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libspex3 arm64 1:7.8.3+dfsg-2 [55.4 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libparu1 arm64 1:7.8.3+dfsg-2 [60.9 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.0-4 [3709 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libsuitesparse-dev arm64 1:7.8.3+dfsg-2 [1306 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libglpk-dev arm64 5.0-1+b2 [431 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.1.0-1 [442 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.8-1 [1985 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.8-1 [4815 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B] Get: 138 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libsbml5t64 arm64 5.20.2+dfsg-8+b1 [1886 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libsbml5-dev arm64 5.20.2+dfsg-8+b1 [3024 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.4.0-0.1+b1 [110 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.4.0-0.1+b1 [122 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-sniffio all 1.3.1-1 [7120 B] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-anyio all 4.6.2-4 [60.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-attr all 24.2.0-1 [68.4 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-click all 8.1.7-2 [94.3 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 python3-cpuinfo all 9.0.0+git20221119-2 [23.4 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 165 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 python3-depinfo arm64 2.2.0-3 [11.6 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.8-1 [506 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 python3-diskcache all 5.6.3-1 [34.4 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 python3-dnspython all 2.7.0-1 [164 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-5 [95.1 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.0-1+b1 [1433 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.14.1-3 [18.5 MB] Get: 178 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 python3-unicodedata2 arm64 15.1.0+ds-1+b4 [298 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.55.0-3 [1500 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 python3-h11 all 0.14.0-1 [50.1 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 python3-httpcore all 1.0.7-1 [44.7 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 python3-mdurl all 0.1.2-1 [9444 B] Get: 188 http://deb.debian.org/debian unstable/main arm64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 python3-rich all 13.7.1-1 [201 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 python3-httpx all 0.27.2-1 [77.6 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 192 http://deb.debian.org/debian unstable/main arm64 python3-rpds-py arm64 0.21.0-2 [259 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 python3-referencing all 0.35.1-2 [23.5 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 195 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema all 4.19.2-5 [71.4 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-2+b1 [71.6 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.4.0-1+b1 [498 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 python3.12-tk arm64 3.12.8-1 [111 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.1-1 [101 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.12.7-1 [9444 B] Get: 201 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 10.4.0-1+b1 [79.9 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.8.3-3+b1 [5586 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 python3-swiglpk arm64 5.0.10-2+b2 [75.5 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 python3-optlang all 1.8.2-2 [5375 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 python3-pip all 24.3.1+dfsg-1 [1441 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 python3-pipdeptree arm64 2.2.0-3 [20.6 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 python3-pydantic-core arm64 2.27.1-1 [1501 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 python3-pydantic arm64 2.10.3-1 [365 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 python3-pytest-benchmark all 5.1.0-1 [44.4 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 python3-pytest-mock all 3.14.0-2 [18.3 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.2.3-3 [112 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 python3-ruamel.yaml.clib arm64 0.2.8+ds-2+b1 [144 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 python3-sbml5 arm64 5.20.2+dfsg-8+b1 [3110 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Fetched 141 MB in 1s (192 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20082 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-1_arm64.deb ... Unpacking python3.12-minimal (3.12.8-1) ... Setting up libpython3.12-minimal:arm64 (3.12.8-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20402 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... 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Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libcamd3:arm64 (1:7.8.3+dfsg-2) ... Setting up libsbml5-dev (5.20.2+dfsg-8+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libglpk40:arm64 (5.0-1+b2) ... Setting up librbio4:arm64 (1:7.8.3+dfsg-2) ... Setting up liblapack-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libccolamd3:arm64 (1:7.8.3+dfsg-2) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... 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Setting up python3-optlang (1.8.2-2) ... /usr/lib/python3/dist-packages/optlang/matrix_interface.py:60: SyntaxWarning: invalid escape sequence '\m' """A representation of the convex optimizatgion problem in standard form. /usr/lib/python3/dist-packages/optlang/tests/data/parse_the_final_netlib_results.py:34: SyntaxWarning: invalid escape sequence '\*' OBJ_REGEX = re.compile('\* Objvalue : -?\d+/\d+') /usr/lib/python3/dist-packages/optlang/tests/test_cplex_interface.py:222: SyntaxWarning: invalid escape sequence '\s' self.assertRegexpMatches(str(self.model), '\s*Dummy_\d+:\s*y \+ z \+ 2\.333 x - .* = -300') Setting up python3-pytest-benchmark (5.1.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-fs (2.4.16-5) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-contourpy (1.3.1-1) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-rich (13.7.1-1) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-httpx (0.27.2-1) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3515831/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3515831/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cobra_0.29.1-1_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.1' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 benchmark: 5.1.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.1 configfile: tox.ini plugins: mock-3.14.0, benchmark-5.1.0, anyio-4.6.2, typeguard-4.4.1 collected 553 items tests/test_core/test_configuration.py ...... [ 1%] tests/test_core/test_core_reaction.py ..........ss...................... [ 7%] ...................x....... [ 12%] tests/test_core/test_dictlist.py ...................... [ 16%] tests/test_core/test_formula.py ..... [ 16%] tests/test_core/test_gene.py . [ 17%] tests/test_core/test_gpr.py .....................x..x................... [ 25%] .......................... [ 29%] tests/test_core/test_group.py .. [ 30%] tests/test_core/test_metabolite.py ...ss.ss. [ 31%] tests/test_core/test_model.py .......................................... [ 39%] ...........s..s.ss. [ 42%] tests/test_core/test_solution.py .ss [ 43%] tests/test_flux_analysis/test_deletion.py ....s..... [ 45%] tests/test_flux_analysis/test_fastcc.py .... [ 45%] tests/test_flux_analysis/test_geometric.py .. [ 46%] tests/test_flux_analysis/test_moma.py . [ 46%] tests/test_flux_analysis/test_parsimonious.py .. [ 46%] tests/test_flux_analysis/test_reaction.py . [ 47%] tests/test_flux_analysis/test_room.py .... [ 47%] tests/test_flux_analysis/test_variability.py ....... [ 49%] tests/test_flux_analysis/test_deletion.py sss [ 49%] tests/test_flux_analysis/test_moma.py s [ 49%] tests/test_flux_analysis/test_deletion.py ...... [ 50%] tests/test_flux_analysis/test_gapfilling.py . [ 50%] tests/test_flux_analysis/test_helpers.py ... [ 51%] tests/test_flux_analysis/test_loopless.py ..... [ 52%] tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%] tests/test_flux_analysis/test_variability.py ....... [ 54%] tests/test_io/test_annotation.py .. [ 55%] tests/test_io/test_annotation_format.py .. [ 55%] tests/test_io/test_io_order.py ........................... [ 60%] tests/test_io/test_json.py .... [ 61%] tests/test_io/test_mat.py ............... [ 63%] tests/test_io/test_notes.py . [ 64%] tests/test_io/test_pickle.py .. [ 64%] tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............. [ 71%] tests/test_io/test_web/test_load.py ..ssss. [ 73%] tests/test_io/test_yaml.py .x [ 73%] tests/test_manipulation/test_annotate.py . [ 73%] tests/test_manipulation/test_delete.py ....... [ 74%] tests/test_manipulation/test_modify.py ... [ 75%] tests/test_manipulation/test_validate.py .. [ 75%] tests/test_medium/test_boundary_types.py ........... [ 77%] tests/test_medium/test_minimal_medium.py .......... [ 79%] tests/test_sampling/test_achr.py ...... [ 80%] tests/test_sampling/test_optgp.py ...... [ 81%] tests/test_sampling/test_sampling.py .......... [ 83%] tests/test_summary/test_metabolite_summary.py ................. [ 86%] tests/test_summary/test_model_summary.py ............... [ 89%] tests/test_summary/test_reaction_summary.py .................... [ 92%] tests/test_util/test_array.py .. [ 93%] tests/test_util/test_context.py ... [ 93%] tests/test_util/test_process_pool.py ............... [ 96%] tests/test_util/test_solver.py ..............s [ 99%] tests/test_util/test_util.py ...x [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_reaction_delete .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_reaction_delete /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list warn("need to pass in a list") .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_change_objective /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead. warn("Please use reaction.flux instead.", DeprecationWarning) .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py:437: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol.growth) .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py:438: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol_one.growth) .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_json.py: 1 warning .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_mat.py: 5 warnings .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_pickle.py: 1 warning .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_sbml.py: 9 warnings .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_yaml.py: 1 warning /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_yaml.py::test_save_yaml_model /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/tests/test_io/test_yaml.py:29: PendingDeprecationWarning: you should no longer specify 'unsafe'. For **dumping only** use yaml=YAML(typ='full') yaml = YAML(typ="unsafe") .pybuild/cpython3_3.12_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.12_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.12_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/boundary_types.py:74: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` compartment = most[matches[most]][0] .pybuild/cpython3_3.12_cobra/build/tests/test_util/test_process_pool.py::test_with_context /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/process_pool.py:71: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://pytest-mock.readthedocs.io/en/latest/remarks.html#usage-as-context-manager self._pool.__enter__() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ------------------------------------------------------------------------------------------------------------------------ benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------- Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_subtract_metabolite_benchmark[gurobi] 3.2000 (1.0) 56.5610 (2.80) 3.3498 (1.0) 0.9346 (2.21) 3.2800 (1.0) 0.1200 (1.50) 14;185 298,522.6123 (1.0) 4385 1 test_subtract_metabolite_benchmark[cplex] 3.2400 (1.01) 20.2010 (1.0) 3.3655 (1.00) 0.4229 (1.0) 3.3200 (1.01) 0.0800 (1.0) 48;473 297,132.7455 (1.00) 4321 1 test_subtract_metabolite_benchmark[glpk] 3.2400 (1.01) 36.2000 (1.79) 3.3794 (1.01) 0.7450 (1.76) 3.3200 (1.01) 0.0800 (1.0) 51;362 295,911.4445 (0.99) 4343 1 test_achr_sample_benchmark 184.0410 (57.51) 290.9620 (14.40) 195.1155 (58.25) 14.6075 (34.54) 189.3210 (57.72) 4.4400 (55.52) 126;166 5,125.1705 (0.02) 952 1 test_change_objective_benchmark[optlang-glpk] 225.4410 (70.45) 971.7250 (48.10) 246.2196 (73.50) 36.5833 (86.50) 237.2810 (72.34) 10.2000 (127.54) 120;355 4,061.4149 (0.01) 2680 1 test_optgp_sample_benchmark 305.1620 (95.36) 541.6030 (26.81) 332.9114 (99.38) 27.1459 (64.18) 322.3820 (98.29) 25.6600 (320.84) 190;86 3,003.8025 (0.01) 1268 1 test_loopless_benchmark_after 1,194.7670 (373.37) 1,611.7290 (79.78) 1,267.4341 (378.36) 45.3970 (107.34) 1,260.7670 (384.38) 56.8795 (711.20) 71;4 788.9956 (0.00) 296 1 test_loopless_benchmark_before 5,637.9130 (>1000.0) 5,952.4340 (294.66) 5,778.3310 (>1000.0) 64.9335 (153.53) 5,772.4935 (>1000.0) 85.7210 (>1000.0) 35;1 173.0604 (0.00) 106 1 test_minimal_medium_mip_benchmark 7,865.6060 (>1000.0) 9,071.8930 (449.08) 8,395.8156 (>1000.0) 259.0897 (612.60) 8,435.1290 (>1000.0) 305.3920 (>1000.0) 22;2 119.1070 (0.00) 71 1 test_minimal_medium_linear_benchmark 8,443.5300 (>1000.0) 9,175.7730 (454.22) 8,693.7133 (>1000.0) 122.8585 (290.49) 8,676.0110 (>1000.0) 165.8010 (>1000.0) 18;1 115.0256 (0.00) 58 1 test_copy_benchmark[optlang-glpk] 13,395.1970 (>1000.0) 339,459.7340 (>1000.0) 19,798.3819 (>1000.0) 38,097.4776 (>1000.0) 15,317.6490 (>1000.0) 2,235.4330 (>1000.0) 1;5 50.5092 (0.00) 73 1 test_gpr_equality_benchmark 20,505.4000 (>1000.0) 21,602.5250 (>1000.0) 20,968.6418 (>1000.0) 269.0143 (636.06) 20,940.5415 (>1000.0) 358.6020 (>1000.0) 16;0 47.6903 (0.00) 40 1 test_deepcopy_benchmark 22,702.4920 (>1000.0) 25,719.7100 (>1000.0) 24,682.3516 (>1000.0) 1,167.7891 (>1000.0) 24,888.9850 (>1000.0) 1,158.9167 (>1000.0) 1;0 40.5148 (0.00) 5 1 test_single_reaction_deletion_benchmark[glpk] 23,718.9780 (>1000.0) 30,786.0590 (>1000.0) 25,333.6543 (>1000.0) 2,027.0936 (>1000.0) 24,617.8430 (>1000.0) 2,067.0715 (>1000.0) 6;3 39.4732 (0.00) 40 1 test_add_metabolite_benchmark[gurobi] 56,877.2110 (>1000.0) 64,650.7360 (>1000.0) 60,025.1189 (>1000.0) 2,517.5641 (>1000.0) 59,543.8665 (>1000.0) 3,991.5440 (>1000.0) 7;0 16.6597 (0.00) 16 1 test_add_metabolite_benchmark[glpk] 57,491.7740 (>1000.0) 91,423.4520 (>1000.0) 63,369.5350 (>1000.0) 8,000.4740 (>1000.0) 60,605.1520 (>1000.0) 7,233.2019 (>1000.0) 1;1 15.7805 (0.00) 18 1 test_add_metabolite_benchmark[cplex] 57,493.6140 (>1000.0) 71,396.4950 (>1000.0) 62,615.8549 (>1000.0) 4,354.0404 (>1000.0) 62,158.9810 (>1000.0) 5,753.6330 (>1000.0) 5;0 15.9704 (0.00) 18 1 test_fastcc_benchmark[glpk] 58,441.4600 (>1000.0) 337,638.5630 (>1000.0) 82,116.1951 (>1000.0) 68,333.8143 (>1000.0) 65,084.7785 (>1000.0) 6,474.2785 (>1000.0) 1;1 12.1779 (0.00) 16 1 test_achr_init_benchmark 84,737.7329 (>1000.0) 88,327.9140 (>1000.0) 86,488.0524 (>1000.0) 1,386.3478 (>1000.0) 86,269.7421 (>1000.0) 2,581.7350 (>1000.0) 3;0 11.5623 (0.00) 11 1 test_optgp_init_benchmark 85,805.8590 (>1000.0) 89,223.7590 (>1000.0) 87,439.4119 (>1000.0) 1,443.4646 (>1000.0) 87,123.4265 (>1000.0) 2,749.6169 (>1000.0) 5;0 11.4365 (0.00) 12 1 test_gpr_symbolism_benchmark 132,476.0500 (>1000.0) 136,624.1150 (>1000.0) 134,450.9866 (>1000.0) 1,394.8224 (>1000.0) 133,930.2185 (>1000.0) 1,964.1315 (>1000.0) 3;0 7.4377 (0.00) 8 1 test_single_gene_deletion_linear_moma_benchmark[glpk] 179,246.9630 (>1000.0) 184,649.6730 (>1000.0) 181,745.5368 (>1000.0) 2,081.3849 (>1000.0) 181,296.1740 (>1000.0) 3,010.4965 (>1000.0) 2;0 5.5022 (0.00) 5 1 test_double_gene_deletion_benchmark 261,263.0790 (>1000.0) 348,905.3900 (>1000.0) 281,071.0988 (>1000.0) 37,973.6002 (>1000.0) 265,086.1820 (>1000.0) 24,349.3520 (>1000.0) 1;1 3.5578 (0.00) 5 1 test_single_gene_deletion_linear_room_benchmark[glpk] 267,693.8370 (>1000.0) 314,145.7460 (>1000.0) 280,385.4704 (>1000.0) 19,267.7965 (>1000.0) 274,967.8790 (>1000.0) 17,643.8517 (>1000.0) 1;1 3.5665 (0.00) 5 1 test_single_gene_deletion_fba_benchmark[glpk] 281,976.7200 (>1000.0) 408,133.5730 (>1000.0) 324,572.7832 (>1000.0) 52,036.1077 (>1000.0) 301,547.4730 (>1000.0) 70,410.9198 (>1000.0) 1;0 3.0810 (0.00) 5 1 test_copy_benchmark_large_model[optlang-glpk] 314,968.8310 (>1000.0) 945,828.6990 (>1000.0) 583,541.0328 (>1000.0) 270,788.6313 (>1000.0) 575,434.7860 (>1000.0) 469,109.2775 (>1000.0) 1;0 1.7137 (0.00) 5 1 test_pfba_benchmark[glpk] 352,346.0091 (>1000.0) 566,058.5320 (>1000.0) 424,311.3556 (>1000.0) 88,662.3916 (>1000.0) 396,671.1870 (>1000.0) 124,744.1548 (>1000.0) 1;0 2.3568 (0.00) 5 1 test_geometric_fba_benchmark[glpk] 392,352.6020 (>1000.0) 1,212,818.9320 (>1000.0) 677,389.9710 (>1000.0) 386,748.3294 (>1000.0) 415,200.6140 (>1000.0) 631,435.6812 (>1000.0) 1;0 1.4763 (0.00) 5 1 test_flux_variability_loopless_benchmark[glpk] 523,894.8470 (>1000.0) 564,064.8010 (>1000.0) 553,460.0992 (>1000.0) 16,834.8807 (>1000.0) 559,859.1371 (>1000.0) 15,578.8407 (>1000.0) 1;1 1.8068 (0.00) 5 1 test_double_reaction_deletion_benchmark 534,176.5870 (>1000.0) 614,731.8550 (>1000.0) 578,118.9784 (>1000.0) 30,677.9808 (>1000.0) 571,978.6870 (>1000.0) 40,394.2748 (>1000.0) 2;0 1.7297 (0.00) 5 1 test_flux_variability_benchmark[glpk] 1,180,798.7870 (>1000.0) 1,605,162.5750 (>1000.0) 1,394,576.4866 (>1000.0) 161,149.5535 (>1000.0) 1,427,865.7440 (>1000.0) 223,571.6903 (>1000.0) 2;0 0.7171 (0.00) 5 1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ===== 515 passed, 27 skipped, 11 xfailed, 76 warnings in 143.93s (0:02:23) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/.benchmarks creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/exceptions.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/solution.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/group.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/model.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/formula.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/metabolite.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/species.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/gene.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/object.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/dictlist.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/singleton.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/configuration.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/yaml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/sbml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/mat.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/json.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/dict.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/load.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/validate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/modify.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/delete.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/annotations.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/sampling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/optgp.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/core.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/achr.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/model_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/process_pool.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/solver.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/context.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/array.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/dictlist.py to dictlist.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/formula.py to formula.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/gene.py to gene.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/group.py to group.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/metabolite.py to metabolite.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/model.py to model.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/object.py to object.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/reaction.py to reaction.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/singleton.py to singleton.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/solution.py to solution.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/configuration.py to configuration.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/room.py to room.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/load.py to load.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/dict.py to dict.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/json.py to json.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/mat.py to mat.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/sbml.py to sbml.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/yaml.py to yaml.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/delete.py to delete.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/modify.py to modify.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/validate.py to validate.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/annotations.py to annotations.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/achr.py to achr.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/core.py to core.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/optgp.py to optgp.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/sampling.py to sampling.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/summary.py to summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/array.py to array.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/context.py to context.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/process_pool.py to process_pool.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/solver.py to solver.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/util.py to util.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/exceptions.py to exceptions.cpython-312.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra-0.29.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.1' dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.1-1_arm64.deb'. dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.29.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.29.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3515831/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3515831/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3515831 and its subdirectories I: Current time: Wed Dec 11 08:27:00 +14 2024 I: pbuilder-time-stamp: 1733855220