I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 23 22:04:44 +14 2025 I: pbuilder-time-stamp: 1766477084 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pyensembl_2.3.13-1.dsc] I: copying [./pyensembl_2.3.13.orig.tar.xz] I: copying [./pyensembl_2.3.13-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat May 11 16:47:07 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pyensembl_2.3.13-1.dsc: no acceptable signature found dpkg-source: info: extracting pyensembl in pyensembl-2.3.13 dpkg-source: info: unpacking pyensembl_2.3.13.orig.tar.xz dpkg-source: info: unpacking pyensembl_2.3.13-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-benchmark.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/919359/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 23 08:04 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/919359/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/919359/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=874b7932d1db434ea27c4cb6d7479f9e LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=919359 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ84PBnn/pbuilderrc_0MVz --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ84PBnn/b2 --logfile b2/build.log pyensembl_2.3.13-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/919359/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-pandas, python3-numpy, python3-datacache, python3-serializable, python3-memoized-property, python3-gtfparse, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-datacache; however: Package python3-datacache is not installed. pbuilder-satisfydepends-dummy depends on python3-serializable; however: Package python3-serializable is not installed. pbuilder-satisfydepends-dummy depends on python3-memoized-property; however: Package python3-memoized-property is not installed. pbuilder-satisfydepends-dummy depends on python3-gtfparse; however: Package python3-gtfparse is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-datacache{a} python3-dateutil{a} python3-gtfparse{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-memoized-property{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pytest{a} python3-requests{a} python3-serializable{a} python3-setuptools{a} python3-simplejson{a} python3-typechecks{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pygments python3-scipy python3-tables wget 0 packages upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 50.5 MB of archives. After unpacking 246 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.0-2 [850 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.0-2 [1838 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [1922 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.0-2 [730 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.7-1 [1052 B] Get: 74 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 python3-typechecks all 0.1.0+ds-4 [4580 B] Get: 87 http://deb.debian.org/debian unstable/main arm64 python3-datacache all 1.4.1-2 [12.9 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 python3-gtfparse all 1.3.0+ds-1 [10.1 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 90 http://deb.debian.org/debian unstable/main arm64 python3-memoized-property all 1.0.3-2 [5552 B] Get: 91 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 python3-simplejson arm64 3.19.3-1+b1 [60.4 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 python3-serializable all 0.4.1+ds-1 [8368 B] Fetched 50.5 MB in 0s (106 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20404 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21466 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_arm64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../01-libpython3.13-minimal_3.13.0-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../02-python3.13-minimal_3.13.0-2_arm64.deb ... Unpacking python3.13-minimal (3.13.0-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../04-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../05-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... 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Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 23 08:05:30 UTC 2025. Universal Time is now: Tue Dec 23 08:05:30 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.0-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-simplejson (3.19.3-1+b1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typechecks (0.1.0+ds-4) ... Setting up python3-memoized-property (1.0.3-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-serializable (0.4.1+ds-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up dh-python (6.20241024) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-datacache (1.4.1-2) ... Setting up python3-gtfparse (1.3.0+ds-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/919359/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/919359/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/pyensembl-2.3.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pyensembl_2.3.13-1_source.changes dpkg-buildpackage: info: source package pyensembl dpkg-buildpackage: info: source version 2.3.13-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from pyensembl-2.3.13/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pyensembl-2.3.13' dh_auto_clean pybuild --clean -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -f pyensembl.egg-info/SOURCES.txt pyensembl.egg-info/requires.txt make[1]: Leaving directory '/build/reproducible-path/pyensembl-2.3.13' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pyensembl.substvars debian/files rm -fr -- debian/pyensembl/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 setup.py config running config I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.13 3.12" I: pybuild base:311: /usr/bin/python3.13 setup.py build running build running build_py creating /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/version.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/transcript.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/species.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/shell.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/sequence_data.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/search.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/reference_name.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/normalization.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/locus_with_genome.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/locus.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/genome.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/gene.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/fasta.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/exon.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/ensembl_versions.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/ensembl_url_templates.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/ensembl_release.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/download_cache.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/database.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/common.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/__init__.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/logging.conf -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/../requirements.txt -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/.. I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/version.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/transcript.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/species.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/shell.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/sequence_data.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/search.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/reference_name.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/normalization.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/locus_with_genome.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/locus.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/genome.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/gene.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/fasta.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/exon.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/ensembl_versions.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/ensembl_url_templates.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/ensembl_release.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/download_cache.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/database.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/common.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/__init__.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/logging.conf -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/../requirements.txt -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/.. dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p "3.13 3.12" I: pybuild base:311: cd /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build; python3.13 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/pyensembl-2.3.13 plugins: typeguard-4.4.1 collecting ... collected 126 items / 98 deselected / 28 selected tests/test_ensembl_object_properties.py::test_human_reference_name PASSED [ 3%] tests/test_locus.py::test_normalize_chromosome PASSED [ 7%] tests/test_locus.py::test_locus_overlaps PASSED [ 10%] tests/test_locus.py::test_locus_contains PASSED [ 14%] tests/test_locus.py::test_position_offset PASSED [ 17%] tests/test_locus.py::test_range_offset PASSED [ 21%] tests/test_locus.py::test_locus_distance PASSED [ 25%] tests/test_missing_genome_sources.py::test_transcript_fasta_only PASSED [ 28%] tests/test_missing_genome_sources.py::test_protein_fasta_only PASSED [ 32%] tests/test_missing_genome_sources.py::test_gtf_only PASSED [ 35%] tests/test_missing_genome_sources.py::test_gtf_transcript_only PASSED [ 39%] tests/test_missing_genome_sources.py::test_gtf_protein_only PASSED [ 42%] tests/test_mouse.py::test_mouse_ENSMUSG00000017167 PASSED [ 46%] tests/test_release_versions.py::test_version_too_old_1 PASSED [ 50%] tests/test_release_versions.py::test_version_too_old_47 PASSED [ 53%] tests/test_release_versions.py::test_version_is_not_numeric PASSED [ 57%] tests/test_release_versions.py::test_version_is_none PASSED [ 60%] tests/test_release_versions.py::test_max_ensembl_release PASSED [ 64%] tests/test_release_versions.py::test_int_version PASSED [ 67%] tests/test_release_versions.py::test_str_version PASSED [ 71%] tests/test_sequence_data.py::test_sequence_type PASSED [ 75%] tests/test_sequence_data.py::test_missing_sequence PASSED [ 78%] tests/test_sequence_data.py::test_clear_cache PASSED [ 82%] tests/test_shell.py::test_genome_selection_grch38 PASSED [ 85%] tests/test_ucsc_gtf.py::test_ucsc_gencode_gtf PASSED [ 89%] tests/test_ucsc_gtf.py::test_ucsc_gencode_genome PASSED [ 92%] tests/test_ucsc_gtf.py::test_ucsc_refseq_gtf PASSED [ 96%] tests/test_ucsc_gtf.py::test_ucsc_refseq_genome PASSED [100%] =============================== warnings summary =============================== pyensembl/shell.py:43 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources pyensembl/shell.py:74 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. release_group = root_group.add_argument_group() pyensembl/shell.py:96 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. path_group = root_group.add_argument_group() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 28 passed, 98 deselected, 3 warnings in 3.48s ================= I: pybuild base:311: cd /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build; python3.12 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/pyensembl-2.3.13 plugins: typeguard-4.4.1 collecting ... collected 126 items / 98 deselected / 28 selected tests/test_ensembl_object_properties.py::test_human_reference_name PASSED [ 3%] tests/test_locus.py::test_normalize_chromosome PASSED [ 7%] tests/test_locus.py::test_locus_overlaps PASSED [ 10%] tests/test_locus.py::test_locus_contains PASSED [ 14%] tests/test_locus.py::test_position_offset PASSED [ 17%] tests/test_locus.py::test_range_offset PASSED [ 21%] tests/test_locus.py::test_locus_distance PASSED [ 25%] tests/test_missing_genome_sources.py::test_transcript_fasta_only PASSED [ 28%] tests/test_missing_genome_sources.py::test_protein_fasta_only PASSED [ 32%] tests/test_missing_genome_sources.py::test_gtf_only PASSED [ 35%] tests/test_missing_genome_sources.py::test_gtf_transcript_only PASSED [ 39%] tests/test_missing_genome_sources.py::test_gtf_protein_only PASSED [ 42%] tests/test_mouse.py::test_mouse_ENSMUSG00000017167 PASSED [ 46%] tests/test_release_versions.py::test_version_too_old_1 PASSED [ 50%] tests/test_release_versions.py::test_version_too_old_47 PASSED [ 53%] tests/test_release_versions.py::test_version_is_not_numeric PASSED [ 57%] tests/test_release_versions.py::test_version_is_none PASSED [ 60%] tests/test_release_versions.py::test_max_ensembl_release PASSED [ 64%] tests/test_release_versions.py::test_int_version PASSED [ 67%] tests/test_release_versions.py::test_str_version PASSED [ 71%] tests/test_sequence_data.py::test_sequence_type PASSED [ 75%] tests/test_sequence_data.py::test_missing_sequence PASSED [ 78%] tests/test_sequence_data.py::test_clear_cache PASSED [ 82%] tests/test_shell.py::test_genome_selection_grch38 PASSED [ 85%] tests/test_ucsc_gtf.py::test_ucsc_gencode_gtf PASSED [ 89%] tests/test_ucsc_gtf.py::test_ucsc_gencode_genome PASSED [ 92%] tests/test_ucsc_gtf.py::test_ucsc_refseq_gtf PASSED [ 96%] tests/test_ucsc_gtf.py::test_ucsc_refseq_genome PASSED [100%] =============================== warnings summary =============================== pyensembl/shell.py:43 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources pyensembl/shell.py:74 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. release_group = root_group.add_argument_group() pyensembl/shell.py:96 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. path_group = root_group.add_argument_group() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 28 passed, 98 deselected, 3 warnings in 3.85s ================= rm -fr -- /tmp/dh-xdg-rundir-X7VXDT2w create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/pyensembl.substvars rm -fr -- debian/.debhelper/generated/pyensembl/ debian/pyensembl/ debian/tmp/ dh_auto_install --destdir=debian/pyensembl/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl pybuild --install -i python{version} -p "3.13 3.12" --dest-dir /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/requirements.txt -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/shell.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/search.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/reference_name.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/ensembl_url_templates.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/species.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/ensembl_versions.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/transcript.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/sequence_data.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/locus_with_genome.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/gene.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/exon.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/genome.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/ensembl_release.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/download_cache.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/locus.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/normalization.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/database.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/logging.conf -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__init__.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/common.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/database.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/download_cache.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/ensembl_release.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/ensembl_url_templates.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/ensembl_versions.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/exon.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/fasta.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/gene.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/genome.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/locus.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/locus_with_genome.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/normalization.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/reference_name.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/search.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/sequence_data.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/shell.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/species.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/transcript.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/version.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/database.py to database.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/download_cache.py to download_cache.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/ensembl_release.py to ensembl_release.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/ensembl_url_templates.py to ensembl_url_templates.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/ensembl_versions.py to ensembl_versions.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/exon.py to exon.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/fasta.py to fasta.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/gene.py to gene.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/genome.py to genome.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/locus.py to locus.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/locus_with_genome.py to locus_with_genome.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/normalization.py to normalization.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/reference_name.py to reference_name.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/search.py to search.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/sequence_data.py to sequence_data.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/shell.py to shell.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/species.py to species.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/transcript.py to transcript.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/version.py to version.cpython-313.pyc running install_egg_info running egg_info creating pyensembl.egg-info writing pyensembl.egg-info/PKG-INFO writing dependency_links to pyensembl.egg-info/dependency_links.txt writing entry points to pyensembl.egg-info/entry_points.txt writing requirements to pyensembl.egg-info/requires.txt writing top-level names to pyensembl.egg-info/top_level.txt writing manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyensembl.egg-info/SOURCES.txt' Copying pyensembl.egg-info to /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl-2.3.13.egg-info Skipping SOURCES.txt running install_scripts Installing pyensembl script to /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/requirements.txt -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/shell.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/search.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/reference_name.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/ensembl_url_templates.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/species.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/ensembl_versions.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/transcript.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/sequence_data.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/locus_with_genome.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/gene.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/exon.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/genome.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/ensembl_release.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/download_cache.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/locus.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/normalization.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/database.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/logging.conf -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__init__.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/common.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/database.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/download_cache.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/ensembl_release.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/ensembl_url_templates.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/ensembl_versions.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/exon.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/fasta.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/gene.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/genome.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/locus.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/locus_with_genome.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/normalization.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/reference_name.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/search.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/sequence_data.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/shell.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/species.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/transcript.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/version.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/common.py to common.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/database.py to database.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/download_cache.py to download_cache.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/ensembl_release.py to ensembl_release.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/ensembl_url_templates.py to ensembl_url_templates.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/ensembl_versions.py to ensembl_versions.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/exon.py to exon.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/gene.py to gene.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/genome.py to genome.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/locus.py to locus.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/locus_with_genome.py to locus_with_genome.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/normalization.py to normalization.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/reference_name.py to reference_name.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/search.py to search.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/sequence_data.py to sequence_data.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/shell.py to shell.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/transcript.py to transcript.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/version.py to version.cpython-312.pyc running install_egg_info running egg_info writing pyensembl.egg-info/PKG-INFO writing dependency_links to pyensembl.egg-info/dependency_links.txt writing entry points to pyensembl.egg-info/entry_points.txt writing requirements to pyensembl.egg-info/requires.txt writing top-level names to pyensembl.egg-info/top_level.txt reading manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyensembl.egg-info/SOURCES.txt' Copying pyensembl.egg-info to /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl-2.3.13.egg-info Skipping SOURCES.txt running install_scripts Installing pyensembl script to /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pyensembl-2.3.13' dh_install find debian -name requirements.txt -delete make[1]: Leaving directory '/build/reproducible-path/pyensembl-2.3.13' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/usr/share/doc/pyensembl install -p -m0644 debian/copyright debian/pyensembl/usr/share/doc/pyensembl/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/usr/share/doc/pyensembl install -p -m0644 debian/.debhelper/generated/pyensembl/dh_installchangelogs.dch.trimmed debian/pyensembl/usr/share/doc/pyensembl/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/usr/share/man/man1/ install -p -m0644 ./debian/pyensembl.1 debian/pyensembl/usr/share/man/man1/pyensembl.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pyensembl/usr/share/man/man1/pyensembl.1 mv debian/pyensembl/usr/share/man/man1/pyensembl.1.dh-new debian/pyensembl/usr/share/man/man1/pyensembl.1 chmod 0644 -- debian/pyensembl/usr/share/man/man1/pyensembl.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20241024 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.12) D: dh_python3 debhelper:174: source=pyensembl, binary packages=['pyensembl'] D: dh_python3 dh_python3:205: processing package pyensembl... D: dh_python3 fs:50: moving files from debian/pyensembl/usr/lib/python3.12/dist-packages to debian/pyensembl/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/pyensembl/usr/lib/python3.13/dist-packages to debian/pyensembl/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package pyensembl details = {'requires.txt': {'debian/pyensembl/usr/lib/python3/dist-packages/pyensembl-2.3.13.egg-info/requires.txt'}, 'egg-info': {'debian/pyensembl/usr/lib/python3/dist-packages/pyensembl-2.3.13.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyensembl D: dh_python3 pydist:175: trying to find dependency for datacache<2.0.0,>=1.4.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for gtfparse<3.0.0,>=2.5.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for memoized-property>=1.0.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pylint<3.0.0,>=2.17.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for serializable<1.0.0,>=0.2.1 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for tinytimer<1.0.0,>=0.0.0 (python=None) D: dh_python3 pydist:291: invoking dpkg -S *python3/*/[Tt][Ii][Nn][Yy][Tt][Ii][Mm][Ee][Rr]-?*.*-info D: dh_python3 pydist:313: dpkg -S did not find package for tinytimer: dpkg-query: no path found matching pattern *python3/*/[Tt][Ii][Nn][Yy][Tt][Ii][Mm][Ee][Rr]-?*.*-info I: dh_python3 pydist:316: Cannot find package that provides tinytimer. Please add package that provides it to Build-Depends or add "tinytimer python3-tinytimer" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. D: dh_python3 pydist:175: trying to find dependency for typechecks<1.0.0,>=0.0.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-serializable', 'pylint', 'python3-gtfparse', 'python3-memoized-property', 'python3-typechecks', 'python3:any', 'python3-datacache'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/pyensembl chmod a-x usr/share/doc/pyensembl/changelog.Debian usr/share/man/man1/pyensembl.1 gzip -9nf usr/share/doc/pyensembl/changelog.Debian usr/share/man/man1/pyensembl.1 cd '/build/reproducible-path/pyensembl-2.3.13' dh_fixperms -O--buildsystem=pybuild find debian/pyensembl ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pyensembl/usr/share/doc -type f -a -true -a ! -regex 'debian/pyensembl/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pyensembl/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/pyensembl/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/pyensembl/DEBIAN/postinst cat debian/pyensembl.postinst.debhelper >> debian/pyensembl/DEBIAN/postinst chmod 0755 -- debian/pyensembl/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/pyensembl/DEBIAN/prerm cat debian/pyensembl.prerm.debhelper >> debian/pyensembl/DEBIAN/prerm chmod 0755 -- debian/pyensembl/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/DEBIAN echo misc:Depends= >> debian/pyensembl.substvars echo misc:Pre-Depends= >> debian/pyensembl.substvars dpkg-gencontrol -ppyensembl -ldebian/changelog -Tdebian/pyensembl.substvars -cdebian/control -Pdebian/pyensembl chmod 0644 -- debian/pyensembl/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/DEBIAN cd debian/pyensembl >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pyensembl/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/pyensembl .. dpkg-deb: building package 'pyensembl' in '../pyensembl_2.3.13-1_all.deb'. dpkg-genbuildinfo --build=binary -O../pyensembl_2.3.13-1_arm64.buildinfo dpkg-genchanges --build=binary -O../pyensembl_2.3.13-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pyensembl-2.3.13/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/919359/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/919359/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/919359 and its subdirectories I: Current time: Tue Dec 23 22:08:16 +14 2025 I: pbuilder-time-stamp: 1766477296