I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 16 17:49:25 +14 2024 I: pbuilder-time-stamp: 1731728965 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-db-ncbihelper-perl_1.7.8-1.dsc] I: copying [./libbio-db-ncbihelper-perl_1.7.8.orig.tar.gz] I: copying [./libbio-db-ncbihelper-perl_1.7.8-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 17 15:59:56 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-db-ncbihelper-perl_1.7.8-1.dsc: no acceptable signature found dpkg-source: info: extracting libbio-db-ncbihelper-perl in libbio-db-ncbihelper-perl-1.7.8 dpkg-source: info: unpacking libbio-db-ncbihelper-perl_1.7.8.orig.tar.gz dpkg-source: info: unpacking libbio-db-ncbihelper-perl_1.7.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_tests I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/818065/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 16 03:49 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/818065/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/818065/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=266692282b7e44d6a9b76b5b07c6e956 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=818065 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4Goq9bLw/pbuilderrc_PtSV --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4Goq9bLw/b2 --logfile b2/build.log libbio-db-ncbihelper-perl_1.7.8-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/818065/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbio-perl-perl, libbio-asn1-entrezgene-perl, libcache-cache-perl, libcgi-pm-perl, libhttp-message-perl, libtest-exception-perl, libtest-most-perl, libtest-requiresinternet-perl, liburi-perl, libwww-perl, libxml-twig-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-asn1-entrezgene-perl; however: Package libbio-asn1-entrezgene-perl is not installed. pbuilder-satisfydepends-dummy depends on libcache-cache-perl; however: Package libcache-cache-perl is not installed. pbuilder-satisfydepends-dummy depends on libcgi-pm-perl; however: Package libcgi-pm-perl is not installed. pbuilder-satisfydepends-dummy depends on libhttp-message-perl; however: Package libhttp-message-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-exception-perl; however: Package libtest-exception-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-requiresinternet-perl; however: Package libtest-requiresinternet-perl is not installed. pbuilder-satisfydepends-dummy depends on liburi-perl; however: Package liburi-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-twig-perl; however: Package libxml-twig-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-asn1-entrezgene-perl{a} libbio-cluster-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libcache-cache-perl{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} liberror-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libipc-sharelite-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-requiresinternet-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-perl-run-perl libcgi-fast-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl lynx perl-tk wget 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 26.9 MB of archives. After unpacking 99.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b1 [97.5 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 54 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libxml-parser-perl arm64 2.47-1+b3 [197 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libxml-twig-perl all 1:3.52-3 [177 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libbio-asn1-entrezgene-perl all 1.730-3 [46.3 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 liberror-perl all 0.17029-2 [29.0 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libipc-sharelite-perl arm64 0.17-5+b3 [22.7 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libcache-cache-perl all 1.08-3 [63.4 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libcgi-pm-perl all 4.66-1 [217 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 76 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Fetched 26.9 MB in 0s (106 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... 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Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.20) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up libbio-asn1-entrezgene-perl (1.730-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/818065/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/818065/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-ncbihelper-perl_1.7.8-1_source.changes dpkg-buildpackage: info: source package libbio-db-ncbihelper-perl dpkg-buildpackage: info: source version 1.7.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8' dh_auto_configure -- /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::NCBIHelper Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8' cp lib/Bio/DB/GenPept.pm blib/lib/Bio/DB/GenPept.pm cp lib/Bio/DB/EntrezGene.pm blib/lib/Bio/DB/EntrezGene.pm cp lib/Bio/DB/Query/GenBank.pm blib/lib/Bio/DB/Query/GenBank.pm cp lib/Bio/DB/GenBank.pm blib/lib/Bio/DB/GenBank.pm cp lib/Bio/DB/NCBIHelper.pm blib/lib/Bio/DB/NCBIHelper.pm cp lib/Bio/DB/Taxonomy/entrez.pm blib/lib/Bio/DB/Taxonomy/entrez.pm cp bin/bp_biofetch_genbank_proxy blib/script/bp_biofetch_genbank_proxy cp bin/bp_download_query_genbank blib/script/bp_download_query_genbank cp bin/bp_query_entrez_taxa blib/script/bp_query_entrez_taxa "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_biofetch_genbank_proxy "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_download_query_genbank "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_query_entrez_taxa Manifying 3 pod documents Manifying 6 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..9 ok 1 - Bio/DB/EntrezGene.pm loaded ok ok 2 - Bio/DB/GenBank.pm loaded ok ok 3 - Bio/DB/GenPept.pm loaded ok ok 4 - Bio/DB/NCBIHelper.pm loaded ok ok 5 - Bio/DB/Query/GenBank.pm loaded ok ok 6 - Bio/DB/Taxonomy/entrez.pm loaded ok ok 7 - bin/bp_biofetch_genbank_proxy compiled ok ok 8 - bin/bp_download_query_genbank compiled ok ok 9 - bin/bp_query_entrez_taxa compiled ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/EntrezGene.t ......... skipped: NO_NETWORK_TESTING t/GenBank.t ............ skipped: NO_NETWORK_TESTING t/GenPept.t ............ skipped: NO_NETWORK_TESTING t/Query-Genbank.t ...... skipped: NO_NETWORK_TESTING t/RefSeq.t ............. skipped: NO_NETWORK_TESTING t/Taxonomy.t ........... skipped: NO_NETWORK_TESTING All tests successful. Files=9, Tests=9, 1 wallclock secs ( 0.05 usr 0.03 sys + 1.34 cusr 0.31 csys = 1.73 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-ncbihelper-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8' Manifying 3 pod documents Manifying 6 pod documents Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/NCBIHelper.pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/GenBank.pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/EntrezGene.pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/GenPept.pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/Taxonomy/entrez.pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/Query/GenBank.pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_query_entrez_taxa.1p Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_download_query_genbank.1p Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_biofetch_genbank_proxy.1p Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::Taxonomy::entrez.3pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::Query::GenBank.3pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::NCBIHelper.3pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::GenPept.3pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::GenBank.3pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::EntrezGene.3pm Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/bin/bp_download_query_genbank Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/bin/bp_query_entrez_taxa Installing /build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8/debian/libbio-db-ncbihelper-perl/usr/bin/bp_biofetch_genbank_proxy make[1]: Leaving directory '/build/reproducible-path/libbio-db-ncbihelper-perl-1.7.8' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-ncbihelper-perl' in '../libbio-db-ncbihelper-perl_1.7.8-1_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-db-ncbihelper-perl_1.7.8-1_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-db-ncbihelper-perl_1.7.8-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/818065/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/818065/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/818065 and its subdirectories I: Current time: Sat Nov 16 17:50:00 +14 2024 I: pbuilder-time-stamp: 1731729000