I: pbuilder: network access will be disabled during build
I: Current time: Thu Dec 12 22:39:46 +14 2024
I: pbuilder-time-stamp: 1733992786
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [abpoa_1.5.3-1.dsc]
I: copying [./abpoa_1.5.3.orig.tar.gz]
I: copying [./abpoa_1.5.3-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Wed Sep 25 19:10:18 2024 
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./abpoa_1.5.3-1.dsc: no acceptable signature found
dpkg-source: info: extracting abpoa in abpoa-1.5.3
dpkg-source: info: unpacking abpoa_1.5.3.orig.tar.gz
dpkg-source: info: unpacking abpoa_1.5.3-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying debian-simde.patch
dpkg-source: info: applying buildflags.patch
dpkg-source: info: applying baseline.patch
dpkg-source: info: applying relax-cython-dep.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/D01_modify_environment starting
debug: Running on codethink02-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Dec 12 08:39 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
  BASH_VERSION='5.2.37(1)-release'
  BUILDDIR=/build/reproducible-path
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=arm64
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DIRSTACK=()
  DISTRIBUTION=unstable
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=aarch64
  HOST_ARCH=arm64
  IFS=' 	
  '
  INVOCATION_ID=956a09e5670d4649bd50fa55415587b4
  LANG=C
  LANGUAGE=nl_BE:nl
  LC_ALL=C
  MACHTYPE=aarch64-unknown-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=3893843
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gzGCqQfk/pbuilderrc_Drtv --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gzGCqQfk/b2 --logfile b2/build.log abpoa_1.5.3-1.dsc'
  SUDO_GID=109
  SUDO_UID=104
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://192.168.101.4:3128
I: uname -a
  Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, cython3, graphviz, libsimde-dev, libpython3-all-dev, python3-all-dev:any, python3-setuptools, python3-wheel, zlib1g-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 20082 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on cython3; however:
  Package cython3 is not installed.
 pbuilder-satisfydepends-dummy depends on graphviz; however:
  Package graphviz is not installed.
 pbuilder-satisfydepends-dummy depends on libsimde-dev; however:
  Package libsimde-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however:
  Package libpython3-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all-dev:any.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on python3-wheel; however:
  Package python3-wheel is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libcom-err2{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsimde-dev{a} libsm6{a} libsvtav1enc2{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} x11-common{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl fonts-liberation javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 
0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded.
Need to get 70.6 MB of archives. After unpacking 300 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.8-1 [808 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.8-1 [1930 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-4 [256 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2~rc1-2 [23.7 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.8-1 [1905 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.8-1 [677 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B]
Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-1 [850 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-1 [1988 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-6 [1130 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-12 [91.4 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 34 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 37 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 39 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB]
Get: 41 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 46 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 47 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 48 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB]
Get: 52 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB]
Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 65 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB]
Get: 66 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB]
Get: 67 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 68 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-3 [273 kB]
Get: 69 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 70 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 71 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 72 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB]
Get: 73 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB]
Get: 74 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB]
Get: 75 http://deb.debian.org/debian unstable/main arm64 libann0 arm64 1.1.2+doc-9+b2 [24.1 kB]
Get: 76 http://deb.debian.org/debian unstable/main arm64 libcdt5 arm64 2.42.4-2+b1 [39.4 kB]
Get: 77 http://deb.debian.org/debian unstable/main arm64 libcgraph6 arm64 2.42.4-2+b1 [61.3 kB]
Get: 78 http://deb.debian.org/debian unstable/main arm64 libaom3 arm64 3.11.0-1 [1690 kB]
Get: 79 http://deb.debian.org/debian unstable/main arm64 libdav1d7 arm64 1.5.0-1+b1 [248 kB]
Get: 80 http://deb.debian.org/debian unstable/main arm64 libabsl20230802 arm64 20230802.1-4 [432 kB]
Get: 81 http://deb.debian.org/debian unstable/main arm64 libgav1-1 arm64 0.19.0-2+b2 [493 kB]
Get: 82 http://deb.debian.org/debian unstable/main arm64 librav1e0.7 arm64 0.7.1-7+b2 [653 kB]
Get: 83 http://deb.debian.org/debian unstable/main arm64 libsvtav1enc2 arm64 2.2.1+dfsg-2 [1463 kB]
Get: 84 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB]
Get: 85 http://deb.debian.org/debian unstable/main arm64 libyuv0 arm64 0.0.1898.20241125-1 [136 kB]
Get: 86 http://deb.debian.org/debian unstable/main arm64 libavif16 arm64 1.1.1-1 [109 kB]
Get: 87 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB]
Get: 88 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-dav1d arm64 1.19.3-1 [11.2 kB]
Get: 89 http://deb.debian.org/debian unstable/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB]
Get: 90 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-libde265 arm64 1.19.3-1 [14.9 kB]
Get: 91 http://deb.debian.org/debian unstable/main arm64 libheif1 arm64 1.19.3-1 [419 kB]
Get: 92 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB]
Get: 93 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB]
Get: 94 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.3-2 [1410 kB]
Get: 95 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 96 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.1.0-1 [442 kB]
Get: 97 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB]
Get: 98 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB]
Get: 99 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get: 100 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB]
Get: 101 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB]
Get: 102 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get: 103 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 104 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 105 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 106 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 107 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get: 108 http://deb.debian.org/debian unstable/main arm64 libxpm4 arm64 1:3.5.17-1+b2 [53.2 kB]
Get: 109 http://deb.debian.org/debian unstable/main arm64 libgd3 arm64 2.3.3-12+b1 [115 kB]
Get: 110 http://deb.debian.org/debian unstable/main arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2+b1 [145 kB]
Get: 111 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB]
Get: 112 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 113 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 114 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB]
Get: 115 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB]
Get: 116 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get: 117 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.4.7-8 [392 kB]
Get: 118 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB]
Get: 119 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB]
Get: 120 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB]
Get: 121 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.55.0+ds-3 [212 kB]
Get: 122 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.55.0+ds-3 [52.1 kB]
Get: 123 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.55.0+ds-3 [33.4 kB]
Get: 124 http://deb.debian.org/debian unstable/main arm64 libpathplan4 arm64 2.42.4-2+b1 [41.4 kB]
Get: 125 http://deb.debian.org/debian unstable/main arm64 libgvc6 arm64 2.42.4-2+b1 [628 kB]
Get: 126 http://deb.debian.org/debian unstable/main arm64 libgvpr2 arm64 2.42.4-2+b1 [182 kB]
Get: 127 http://deb.debian.org/debian unstable/main arm64 liblab-gamut1 arm64 2.42.4-2+b1 [198 kB]
Get: 128 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.1 [216 kB]
Get: 129 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB]
Get: 130 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB]
Get: 131 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB]
Get: 132 http://deb.debian.org/debian unstable/main arm64 libxmu6 arm64 2:1.1.3-3+b3 [55.6 kB]
Get: 133 http://deb.debian.org/debian unstable/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB]
Get: 134 http://deb.debian.org/debian unstable/main arm64 graphviz arm64 2.42.4-2+b1 [574 kB]
Get: 135 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB]
Get: 136 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 137 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 138 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-2 [30.3 kB]
Get: 139 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.8-1 [1985 kB]
Get: 140 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 141 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.8-1 [4815 kB]
Get: 142 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B]
Get: 143 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-1 [1912 kB]
Get: 144 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.1-1 [1969 kB]
Get: 145 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.1-1 [4706 kB]
Get: 146 http://deb.debian.org/debian unstable/main arm64 libpython3-all-dev arm64 3.12.7-1 [1072 B]
Get: 147 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.2-2 [467 kB]
Get: 148 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-1 [740 kB]
Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.7-1 [1052 B]
Get: 150 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.8-1 [506 kB]
Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB]
Get: 152 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.1-1 [504 kB]
Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-all-dev arm64 3.12.7-1 [1076 B]
Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.45.1-1 [56.7 kB]
Fetched 70.6 MB in 0s (166 MB/s)
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3 (3.12.7-1) ...
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Setting up python3-autocommand (2.2.2-3) ...
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Processing triggers for libc-bin (2.40-4) ...
Reading package lists...
Building dependency tree...
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Initializing package states...
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 -> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/abpoa-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../abpoa_1.5.3-1_source.changes
dpkg-buildpackage: info: source package abpoa
dpkg-buildpackage: info: source version 1.5.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --with=python3 --buildsystem=pybuild
   debian/rules execute_before_dh_testdir
make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3'
# Guard against outdated maintainer manual page.
# Hint: help2man does mostly the right thing except for stderr
# capture, multiple commands support, and commands description.
grep -q 1.5.3 debian/manuals/abpoa.1
make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3'
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
running clean
removing '/build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.13_pyabpoa/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
I: pybuild base:311: python3.12 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
running clean
removing '/build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --with=python3 --buildsystem=pybuild
   debian/rules execute_before_dh_testdir
make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3'
# Guard against outdated maintainer manual page.
# Hint: help2man does mostly the right thing except for stderr
# capture, multiple commands support, and commands description.
grep -q 1.5.3 debian/manuals/abpoa.1
make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3'
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config 
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
running config
I: pybuild base:311: python3.12 setup.py config 
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
running config
   dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py build 
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
running build
running build_ext
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/abpoa-1.5.3/python/pyabpoa.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling python/pyabpoa.pyx because it changed.
[1/1] Cythonizing python/pyabpoa.pyx
building 'pyabpoa' extension
creating build/temp.linux-aarch64-cpython-313/python
creating build/temp.linux-aarch64-cpython-313/src
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c python/pyabpoa.c -o build/temp.linux-aarch64-cpython-313/python/pyabpoa.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from python/pyabpoa.c:1285:
include/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_align.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa_seq.h:5,
                 from src/abpoa_align.c:7:
src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
  217 |     SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
      |                ^~~~~~~~~
src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
  235 |         __KSEQ_COPY(SCOPE)
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
  176 |         SCOPE int kseq_read(kseq_t *seq) \
      |                   ^~~~~~~~~
src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’
  234 |         __KSEQ_READ(SCOPE)                          \
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
In file included from src/abpoa.h:5,
                 from src/abpoa_align.c:4:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_graph.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_graph.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa_seq.h:5,
                 from src/abpoa_graph.c:5:
src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
  217 |     SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
      |                ^~~~~~~~~
src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
  235 |         __KSEQ_COPY(SCOPE)
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
  176 |         SCOPE int kseq_read(kseq_t *seq) \
      |                   ^~~~~~~~~
src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’
  234 |         __KSEQ_READ(SCOPE)                          \
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
  162 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
      |                    ^~~~~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
  156 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
      |                       ^~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
In file included from src/abpoa.h:5,
                 from src/abpoa_align.h:4,
                 from src/abpoa_graph.c:4:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_output.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_output.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa_seq.h:5,
                 from src/abpoa_output.c:7:
src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
  217 |     SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
      |                ^~~~~~~~~
src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
  235 |         __KSEQ_COPY(SCOPE)
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
  176 |         SCOPE int kseq_read(kseq_t *seq) \
      |                   ^~~~~~~~~
src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’
  234 |         __KSEQ_READ(SCOPE)                          \
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
  162 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
      |                    ^~~~~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
  156 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
      |                       ^~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
In file included from src/abpoa.h:5,
                 from src/abpoa_output.c:4:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_plot.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_plot.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa.h:5,
                 from src/abpoa_plot.c:3:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_seed.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_seed.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
src/abpoa_seed.c: In function ‘abpoa_dp_chaining_of_local_chains’:
src/abpoa_seed.c:458:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  458 |         for (i = _n; i < par_anchors->n; ++i) {
      |                        ^
In file included from src/abpoa.h:5,
                 from src/abpoa_seed.c:5:
src/simd_instruction.h: At top level:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_seq.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_seq.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa_seq.h:5,
                 from src/abpoa_seq.c:4:
src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
  217 |     SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
      |                ^~~~~~~~~
src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
  235 |         __KSEQ_COPY(SCOPE)
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
  162 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
      |                    ^~~~~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
  156 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
      |                       ^~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
In file included from src/abpoa.h:5,
                 from src/abpoa_seq.h:4:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/kalloc.c -o build/temp.linux-aarch64-cpython-313/src/kalloc.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/kstring.c -o build/temp.linux-aarch64-cpython-313/src/kstring.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
src/kstring.c: In function ‘kvsprintf’:
src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   15 |         if (l + 1 > s->m - s->l) {
      |                   ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/simd_abpoa_align.c -o build/temp.linux-aarch64-cpython-313/src/simd_abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/simd_check.c -o build/temp.linux-aarch64-cpython-313/src/simd_check.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/simd_check.c:1:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/utils.c -o build/temp.linux-aarch64-cpython-313/src/utils.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES build/temp.linux-aarch64-cpython-313/python/pyabpoa.o build/temp.linux-aarch64-cpython-313/src/abpoa_align.o build/temp.linux-aarch64-cpython-313/src/abpoa_graph.o build/temp.linux-aarch64-cpython-313/src/abpoa_output.o build/temp.linux-aarch64-cpython-313/src/abpoa_plot.o build/temp.linux-aarch64-cpython-313/src/abpoa_seed.o build/temp.linux-aarch64-cpython-313/src/abpoa_seq.o build/temp.linux-aarch64-cpython-313/src/kalloc.o build/temp.linux-aarch64-cpython-313/src/kstring.o build/temp.linux-aarch64-cpython-313/src/simd_abpoa_align.o build/temp.linux-aarch64-cpython-313/src/simd_check.o build/temp.linux-aarch64-cpython-313/src/utils.o -L/usr/lib/aarch64-linux-gnu -lz -lm -lpthread -o /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.13_pyabpoa/build/pyabpoa.cpython-313-aarch64-linux-gnu.so
I: pybuild base:311: /usr/bin/python3 setup.py build 
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
running build
running build_ext
building 'pyabpoa' extension
creating build/temp.linux-aarch64-cpython-312/python
creating build/temp.linux-aarch64-cpython-312/src
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c python/pyabpoa.c -o build/temp.linux-aarch64-cpython-312/python/pyabpoa.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from python/pyabpoa.c:1285:
include/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa_seq.h:5,
                 from src/abpoa_align.c:7:
src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
  217 |     SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
      |                ^~~~~~~~~
src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
  235 |         __KSEQ_COPY(SCOPE)
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
  176 |         SCOPE int kseq_read(kseq_t *seq) \
      |                   ^~~~~~~~~
src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’
  234 |         __KSEQ_READ(SCOPE)                          \
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
In file included from src/abpoa.h:5,
                 from src/abpoa_align.c:4:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_graph.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa_seq.h:5,
                 from src/abpoa_graph.c:5:
src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
  217 |     SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
      |                ^~~~~~~~~
src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
  235 |         __KSEQ_COPY(SCOPE)
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
  176 |         SCOPE int kseq_read(kseq_t *seq) \
      |                   ^~~~~~~~~
src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’
  234 |         __KSEQ_READ(SCOPE)                          \
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
  162 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
      |                    ^~~~~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
  156 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
      |                       ^~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
In file included from src/abpoa.h:5,
                 from src/abpoa_align.h:4,
                 from src/abpoa_graph.c:4:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_output.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa_seq.h:5,
                 from src/abpoa_output.c:7:
src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
  217 |     SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
      |                ^~~~~~~~~
src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
  235 |         __KSEQ_COPY(SCOPE)
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
  176 |         SCOPE int kseq_read(kseq_t *seq) \
      |                   ^~~~~~~~~
src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’
  234 |         __KSEQ_READ(SCOPE)                          \
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
  162 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
      |                    ^~~~~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
  156 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
      |                       ^~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
In file included from src/abpoa.h:5,
                 from src/abpoa_output.c:4:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_plot.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa.h:5,
                 from src/abpoa_plot.c:3:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seed.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
src/abpoa_seed.c: In function ‘abpoa_dp_chaining_of_local_chains’:
src/abpoa_seed.c:458:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  458 |         for (i = _n; i < par_anchors->n; ++i) {
      |                        ^
In file included from src/abpoa.h:5,
                 from src/abpoa_seed.c:5:
src/simd_instruction.h: At top level:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seq.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/abpoa_seq.h:5,
                 from src/abpoa_seq.c:4:
src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
  217 |     SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
      |                ^~~~~~~~~
src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
  235 |         __KSEQ_COPY(SCOPE)
      |         ^~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
  162 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
      |                    ^~~~~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
  156 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
      |                       ^~~~~~~~~
src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
  233 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
      |         ^~~~~~~~~~~~
src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
  237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
    7 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
In file included from src/abpoa.h:5,
                 from src/abpoa_seq.h:4:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kalloc.c -o build/temp.linux-aarch64-cpython-312/src/kalloc.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kstring.c -o build/temp.linux-aarch64-cpython-312/src/kstring.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
src/kstring.c: In function ‘kvsprintf’:
src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   15 |         if (l + 1 > s->m - s->l) {
      |                   ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_check.c -o build/temp.linux-aarch64-cpython-312/src/simd_check.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
In file included from src/simd_check.c:1:
src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
  614 | static void *SIMDMalloc(size_t size, size_t align) {
      |              ^~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/utils.c -o build/temp.linux-aarch64-cpython-312/src/utils.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES build/temp.linux-aarch64-cpython-312/python/pyabpoa.o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o build/temp.linux-aarch64-cpython-312/src/kalloc.o build/temp.linux-aarch64-cpython-312/src/kstring.o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o build/temp.linux-aarch64-cpython-312/src/simd_check.o build/temp.linux-aarch64-cpython-312/src/utils.o -L/usr/lib/aarch64-linux-gnu -lz -lm -lpthread -o /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so
   debian/rules execute_after_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3'
dh_auto_build --buildsystem=makefile -- all
	make -j12 "INSTALL=install --strip-program=true" all
make[2]: Entering directory '/build/reproducible-path/abpoa-1.5.3'
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/abpoa.c -o src/abpoa.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_align.c -I./include -o src/abpoa_align.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_graph.c -I./include -o src/abpoa_graph.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_plot.c -I./include -o src/abpoa_plot.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seed.c -I./include -o src/abpoa_seed.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seq.c -I./include -o src/abpoa_seq.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_output.c -I./include -o src/abpoa_output.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kalloc.c -I./include -o src/kalloc.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kstring.c -I./include -o src/kstring.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_check.c -o src/simd_check.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/utils.c -I./include -o src/utils.o
In file included from /usr/include/string.h:548,
                 from src/abpoa_seed.c:4:
In function ‘memset’,
    inlined from ‘abpoa_dp_chaining’ at src/abpoa_seed.c:549:36:
/usr/include/aarch64-linux-gnu/bits/string_fortified.h:59:10: warning: ‘__builtin_memset’ specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
   59 |   return __builtin___memset_chk (__dest, __ch, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   60 |                                  __glibc_objsize0 (__dest));
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~
if [ ! -d ./lib ]; then mkdir ./lib; fi
ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o
if [ ! -d ./bin ]; then mkdir ./bin; fi
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa 
make[2]: Leaving directory '/build/reproducible-path/abpoa-1.5.3'
mv -v bin/abpoa bin/abpoa.generic
renamed 'bin/abpoa' -> 'bin/abpoa.generic'
cp debian/abpoa-dispatch.sh bin/abpoa
make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3'
# Tests from the README.md document
./bin/abpoa ./test_data/seq.fa > cons.fa
[main] CMD:  ./bin/abpoa.generic ./test_data/seq.fa
[abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB.
./bin/abpoa ./test_data/heter.fa > 2cons.fa
[main] CMD:  ./bin/abpoa.generic ./test_data/heter.fa
[abpoa_main] Real time: 0.066 sec; CPU: 0.074 sec; Peak RSS: 0.009 GB.
./bin/abpoa -r1 ./test_data/seq.fa > out.msa
[main] CMD:  ./bin/abpoa.generic -r1 ./test_data/seq.fa
[abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB.
./bin/abpoa -r2 ./test_data/seq.fa > out_cons.msa
[main] CMD:  ./bin/abpoa.generic -r2 ./test_data/seq.fa
[abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB.
./bin/abpoa -r3 ./test_data/seq.fa > out.gfa
[main] CMD:  ./bin/abpoa.generic -r3 ./test_data/seq.fa
[abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB.
./bin/abpoa -r4 ./test_data/seq.fa > out4.gfa
[main] CMD:  ./bin/abpoa.generic -r4 ./test_data/seq.fa
[abpoa_main] Real time: 0.002 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB.
cp out.gfa in.gfa
cp out.msa in.msa
./bin/abpoa -i in.gfa ./test_data/seq.fa -r3 > out.gfa
[main] CMD:  ./bin/abpoa.generic -i in.gfa -r3 ./test_data/seq.fa
[abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB.
./bin/abpoa -i in.msa ./test_data/seq.fa -r1 > out.msa
[main] CMD:  ./bin/abpoa.generic -i in.msa -r1 ./test_data/seq.fa
[abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB.
./bin/abpoa ./test_data/seq.fa -g poa.png > cons.fa
[main] CMD:  ./bin/abpoa.generic -g poa.png ./test_data/seq.fa
[abpoa_main] Real time: 0.493 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB.
./bin/abpoa ./test_data/heter.fa -d2
[main] CMD:  ./bin/abpoa.generic -d2 ./test_data/heter.fa
[abpoa_main] Real time: 0.067 sec; CPU: 0.074 sec; Peak RSS: 0.009 GB.
>Consensus_sequence_1 0,2,3,4,10,13,14
CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC
>Consensus_sequence_2 1,5,6,7,8,9,11,12
CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCATCCCCACCGCCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC
make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   dh_auto_install -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa 
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_ext
running install_lib
creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.13/dist-packages
copying /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.13_pyabpoa/build/pyabpoa.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.13/dist-packages
running install_egg_info
running egg_info
creating pyabpoa.egg-info
writing pyabpoa.egg-info/PKG-INFO
writing dependency_links to pyabpoa.egg-info/dependency_links.txt
writing top-level names to pyabpoa.egg-info/top_level.txt
writing manifest file 'pyabpoa.egg-info/SOURCES.txt'
reading manifest file 'pyabpoa.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'pyabpoa.egg-info/SOURCES.txt'
Copying pyabpoa.egg-info to /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.13/dist-packages/pyabpoa-1.5.3.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa 
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_ext
running install_lib
creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages
copying /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages
running install_egg_info
running egg_info
writing pyabpoa.egg-info/PKG-INFO
writing dependency_links to pyabpoa.egg-info/dependency_links.txt
writing top-level names to pyabpoa.egg-info/top_level.txt
reading manifest file 'pyabpoa.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'pyabpoa.egg-info/SOURCES.txt'
Copying pyabpoa.egg-info to /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages/pyabpoa-1.5.3.egg-info
Skipping SOURCES.txt
running install_scripts
   dh_install -O--buildsystem=pybuild
   dh_installdocs -O--buildsystem=pybuild
   dh_installchangelogs -O--buildsystem=pybuild
   dh_installexamples -O--buildsystem=pybuild
   dh_installman -O--buildsystem=pybuild
   dh_python3 -O--buildsystem=pybuild
   dh_installsystemduser -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
   dh_fixperms -O--buildsystem=pybuild
   dh_missing -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
   dh_installdeb -O--buildsystem=pybuild
   debian/rules override_dh_gencontrol
make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3'
dh_gencontrol -- \
	-Vsimde:Built-Using="simde (= 0.8.2-2), "
make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3'
   dh_md5sums -O--buildsystem=pybuild
   dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'abpoa' in '../abpoa_1.5.3-1_arm64.deb'.
dpkg-deb: building package 'abpoa-dbgsym' in '../abpoa-dbgsym_1.5.3-1_arm64.deb'.
dpkg-deb: building package 'python3-pyabpoa' in '../python3-pyabpoa_1.5.3-1_arm64.deb'.
dpkg-deb: building package 'python3-pyabpoa-dbgsym' in '../python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb'.
 dpkg-genbuildinfo --build=binary -O../abpoa_1.5.3-1_arm64.buildinfo
 dpkg-genchanges --build=binary -O../abpoa_1.5.3-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/3893843 and its subdirectories
I: Current time: Thu Dec 12 22:42:36 +14 2024
I: pbuilder-time-stamp: 1733992956