I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 12 22:39:46 +14 2024 I: pbuilder-time-stamp: 1733992786 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [abpoa_1.5.3-1.dsc] I: copying [./abpoa_1.5.3.orig.tar.gz] I: copying [./abpoa_1.5.3-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Sep 25 19:10:18 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./abpoa_1.5.3-1.dsc: no acceptable signature found dpkg-source: info: extracting abpoa in abpoa-1.5.3 dpkg-source: info: unpacking abpoa_1.5.3.orig.tar.gz dpkg-source: info: unpacking abpoa_1.5.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-simde.patch dpkg-source: info: applying buildflags.patch dpkg-source: info: applying baseline.patch dpkg-source: info: applying relax-cython-dep.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/D01_modify_environment starting debug: Running on codethink02-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 12 08:39 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=956a09e5670d4649bd50fa55415587b4 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3893843 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gzGCqQfk/pbuilderrc_Drtv --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gzGCqQfk/b2 --logfile b2/build.log abpoa_1.5.3-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, cython3, graphviz, libsimde-dev, libpython3-all-dev, python3-all-dev:any, python3-setuptools, python3-wheel, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20082 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libcom-err2{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsimde-dev{a} libsm6{a} libsvtav1enc2{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-liberation javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 70.6 MB of archives. After unpacking 300 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.8-1 [808 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.8-1 [1930 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2~rc1-2 [23.7 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.8-1 [1905 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.8-1 [677 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-1 [850 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-1 [1988 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-6 [1130 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-12 [91.4 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-3 [273 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libann0 arm64 1.1.2+doc-9+b2 [24.1 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcdt5 arm64 2.42.4-2+b1 [39.4 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libcgraph6 arm64 2.42.4-2+b1 [61.3 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libaom3 arm64 3.11.0-1 [1690 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libdav1d7 arm64 1.5.0-1+b1 [248 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libabsl20230802 arm64 20230802.1-4 [432 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libgav1-1 arm64 0.19.0-2+b2 [493 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 librav1e0.7 arm64 0.7.1-7+b2 [653 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libsvtav1enc2 arm64 2.2.1+dfsg-2 [1463 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libyuv0 arm64 0.0.1898.20241125-1 [136 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libavif16 arm64 1.1.1-1 [109 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-dav1d arm64 1.19.3-1 [11.2 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-libde265 arm64 1.19.3-1 [14.9 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libheif1 arm64 1.19.3-1 [419 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.3-2 [1410 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.1.0-1 [442 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libxpm4 arm64 1:3.5.17-1+b2 [53.2 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libgd3 arm64 2.3.3-12+b1 [115 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2+b1 [145 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.4.7-8 [392 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.55.0+ds-3 [212 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.55.0+ds-3 [52.1 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.55.0+ds-3 [33.4 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libpathplan4 arm64 2.42.4-2+b1 [41.4 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libgvc6 arm64 2.42.4-2+b1 [628 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libgvpr2 arm64 2.42.4-2+b1 [182 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 liblab-gamut1 arm64 2.42.4-2+b1 [198 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libxmu6 arm64 2:1.1.3-3+b3 [55.6 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 graphviz arm64 2.42.4-2+b1 [574 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-2 [30.3 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.8-1 [1985 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.8-1 [4815 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B] Get: 143 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-1 [1912 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.1-1 [1969 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.1-1 [4706 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 libpython3-all-dev arm64 3.12.7-1 [1072 B] Get: 147 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.2-2 [467 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-1 [740 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.7-1 [1052 B] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.8-1 [506 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.1-1 [504 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-all-dev arm64 3.12.7-1 [1076 B] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Fetched 70.6 MB in 0s (166 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20082 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-1_arm64.deb ... Unpacking python3.12-minimal (3.12.8-1) ... Setting up libpython3.12-minimal:arm64 (3.12.8-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20402 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-1_arm64.deb ... Unpacking python3.12 (3.12.8-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21465 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_arm64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../001-libpython3.13-minimal_3.13.1-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../002-python3.13-minimal_3.13.1-1_arm64.deb ... Unpacking python3.13-minimal (3.13.1-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-6_arm64.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-12_arm64.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... 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Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../025-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../027-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../028-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../033-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../034-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../035-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../036-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../037-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../038-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../039-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../040-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../041-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../042-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../043-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../044-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../045-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../046-libpng16-16t64_1.6.44-3_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.44-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../047-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/abpoa-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../abpoa_1.5.3-1_source.changes dpkg-buildpackage: info: source package abpoa dpkg-buildpackage: info: source version 1.5.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org> dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with=python3 --buildsystem=pybuild debian/rules execute_before_dh_testdir make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Guard against outdated maintainer manual page. # Hint: help2man does mostly the right thing except for stderr # capture, multiple commands support, and commands description. grep -q 1.5.3 debian/manuals/abpoa.1 make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running clean removing '/build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.13_pyabpoa/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running clean removing '/build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with=python3 --buildsystem=pybuild debian/rules execute_before_dh_testdir make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Guard against outdated maintainer manual page. # Hint: help2man does mostly the right thing except for stderr # capture, multiple commands support, and commands description. grep -q 1.5.3 debian/manuals/abpoa.1 make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/abpoa-1.5.3/python/pyabpoa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling python/pyabpoa.pyx because it changed. [1/1] Cythonizing python/pyabpoa.pyx building 'pyabpoa' extension creating build/temp.linux-aarch64-cpython-313/python creating build/temp.linux-aarch64-cpython-313/src aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c python/pyabpoa.c -o build/temp.linux-aarch64-cpython-313/python/pyabpoa.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from python/pyabpoa.c:1285: include/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_align.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_align.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_graph.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_graph.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_graph.c:5: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.h:4, from src/abpoa_graph.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_output.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_output.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_output.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_output.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_plot.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_plot.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa.h:5, from src/abpoa_plot.c:3: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_seed.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_seed.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c: In function ‘abpoa_dp_chaining_of_local_chains’: src/abpoa_seed.c:458:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 458 | for (i = _n; i < par_anchors->n; ++i) { | ^ In file included from src/abpoa.h:5, from src/abpoa_seed.c:5: src/simd_instruction.h: At top level: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_seq.c -o build/temp.linux-aarch64-cpython-313/src/abpoa_seq.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_seq.c:4: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_seq.h:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/kalloc.c -o build/temp.linux-aarch64-cpython-313/src/kalloc.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/kstring.c -o build/temp.linux-aarch64-cpython-313/src/kstring.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c: In function ‘kvsprintf’: src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 15 | if (l + 1 > s->m - s->l) { | ^ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/simd_abpoa_align.c -o build/temp.linux-aarch64-cpython-313/src/simd_abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/simd_check.c -o build/temp.linux-aarch64-cpython-313/src/simd_check.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/simd_check.c:1: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/utils.c -o build/temp.linux-aarch64-cpython-313/src/utils.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES build/temp.linux-aarch64-cpython-313/python/pyabpoa.o build/temp.linux-aarch64-cpython-313/src/abpoa_align.o build/temp.linux-aarch64-cpython-313/src/abpoa_graph.o build/temp.linux-aarch64-cpython-313/src/abpoa_output.o build/temp.linux-aarch64-cpython-313/src/abpoa_plot.o build/temp.linux-aarch64-cpython-313/src/abpoa_seed.o build/temp.linux-aarch64-cpython-313/src/abpoa_seq.o build/temp.linux-aarch64-cpython-313/src/kalloc.o build/temp.linux-aarch64-cpython-313/src/kstring.o build/temp.linux-aarch64-cpython-313/src/simd_abpoa_align.o build/temp.linux-aarch64-cpython-313/src/simd_check.o build/temp.linux-aarch64-cpython-313/src/utils.o -L/usr/lib/aarch64-linux-gnu -lz -lm -lpthread -o /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.13_pyabpoa/build/pyabpoa.cpython-313-aarch64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext building 'pyabpoa' extension creating build/temp.linux-aarch64-cpython-312/python creating build/temp.linux-aarch64-cpython-312/src aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c python/pyabpoa.c -o build/temp.linux-aarch64-cpython-312/python/pyabpoa.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from python/pyabpoa.c:1285: include/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_align.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_graph.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_graph.c:5: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.h:4, from src/abpoa_graph.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_output.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_output.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_output.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_plot.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa.h:5, from src/abpoa_plot.c:3: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seed.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c: In function ‘abpoa_dp_chaining_of_local_chains’: src/abpoa_seed.c:458:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 458 | for (i = _n; i < par_anchors->n; ++i) { | ^ In file included from src/abpoa.h:5, from src/abpoa_seed.c:5: src/simd_instruction.h: At top level: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seq.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_seq.c:4: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_seq.h:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kalloc.c -o build/temp.linux-aarch64-cpython-312/src/kalloc.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kstring.c -o build/temp.linux-aarch64-cpython-312/src/kstring.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c: In function ‘kvsprintf’: src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 15 | if (l + 1 > s->m - s->l) { | ^ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_check.c -o build/temp.linux-aarch64-cpython-312/src/simd_check.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/simd_check.c:1: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/utils.c -o build/temp.linux-aarch64-cpython-312/src/utils.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES build/temp.linux-aarch64-cpython-312/python/pyabpoa.o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o build/temp.linux-aarch64-cpython-312/src/kalloc.o build/temp.linux-aarch64-cpython-312/src/kstring.o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o build/temp.linux-aarch64-cpython-312/src/simd_check.o build/temp.linux-aarch64-cpython-312/src/utils.o -L/usr/lib/aarch64-linux-gnu -lz -lm -lpthread -o /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' dh_auto_build --buildsystem=makefile -- all make -j12 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/reproducible-path/abpoa-1.5.3' cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_align.c -I./include -o src/abpoa_align.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_output.c -I./include -o src/abpoa_output.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kalloc.c -I./include -o src/kalloc.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kstring.c -I./include -o src/kstring.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_check.c -o src/simd_check.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/utils.c -I./include -o src/utils.o In file included from /usr/include/string.h:548, from src/abpoa_seed.c:4: In function ‘memset’, inlined from ‘abpoa_dp_chaining’ at src/abpoa_seed.c:549:36: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:59:10: warning: ‘__builtin_memset’ specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' mv -v bin/abpoa bin/abpoa.generic renamed 'bin/abpoa' -> 'bin/abpoa.generic' cp debian/abpoa-dispatch.sh bin/abpoa make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Tests from the README.md document ./bin/abpoa ./test_data/seq.fa > cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/seq.fa [abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/heter.fa > 2cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/heter.fa [abpoa_main] Real time: 0.066 sec; CPU: 0.074 sec; Peak RSS: 0.009 GB. ./bin/abpoa -r1 ./test_data/seq.fa > out.msa [main] CMD: ./bin/abpoa.generic -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r2 ./test_data/seq.fa > out_cons.msa [main] CMD: ./bin/abpoa.generic -r2 ./test_data/seq.fa [abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r3 ./test_data/seq.fa > out.gfa [main] CMD: ./bin/abpoa.generic -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r4 ./test_data/seq.fa > out4.gfa [main] CMD: ./bin/abpoa.generic -r4 ./test_data/seq.fa [abpoa_main] Real time: 0.002 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. cp out.gfa in.gfa cp out.msa in.msa ./bin/abpoa -i in.gfa ./test_data/seq.fa -r3 > out.gfa [main] CMD: ./bin/abpoa.generic -i in.gfa -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa -i in.msa ./test_data/seq.fa -r1 > out.msa [main] CMD: ./bin/abpoa.generic -i in.msa -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/seq.fa -g poa.png > cons.fa [main] CMD: ./bin/abpoa.generic -g poa.png ./test_data/seq.fa [abpoa_main] Real time: 0.493 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/heter.fa -d2 [main] CMD: ./bin/abpoa.generic -d2 ./test_data/heter.fa [abpoa_main] Real time: 0.067 sec; CPU: 0.074 sec; Peak RSS: 0.009 GB. >Consensus_sequence_1 0,2,3,4,10,13,14 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC >Consensus_sequence_2 1,5,6,7,8,9,11,12 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCATCCCCACCGCCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.13/dist-packages copying /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.13_pyabpoa/build/pyabpoa.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.13/dist-packages running install_egg_info running egg_info creating pyabpoa.egg-info writing pyabpoa.egg-info/PKG-INFO writing dependency_links to pyabpoa.egg-info/dependency_links.txt writing top-level names to pyabpoa.egg-info/top_level.txt writing manifest file 'pyabpoa.egg-info/SOURCES.txt' reading manifest file 'pyabpoa.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyabpoa.egg-info/SOURCES.txt' Copying pyabpoa.egg-info to /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.13/dist-packages/pyabpoa-1.5.3.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages copying /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages running install_egg_info running egg_info writing pyabpoa.egg-info/PKG-INFO writing dependency_links to pyabpoa.egg-info/dependency_links.txt writing top-level names to pyabpoa.egg-info/top_level.txt reading manifest file 'pyabpoa.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyabpoa.egg-info/SOURCES.txt' Copying pyabpoa.egg-info to /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages/pyabpoa-1.5.3.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' dh_gencontrol -- \ -Vsimde:Built-Using="simde (= 0.8.2-2), " make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'abpoa' in '../abpoa_1.5.3-1_arm64.deb'. dpkg-deb: building package 'abpoa-dbgsym' in '../abpoa-dbgsym_1.5.3-1_arm64.deb'. dpkg-deb: building package 'python3-pyabpoa' in '../python3-pyabpoa_1.5.3-1_arm64.deb'. dpkg-deb: building package 'python3-pyabpoa-dbgsym' in '../python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../abpoa_1.5.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../abpoa_1.5.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3893843/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3893843 and its subdirectories I: Current time: Thu Dec 12 22:42:36 +14 2024 I: pbuilder-time-stamp: 1733992956