I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 28 09:40:29 +14 2024 I: pbuilder-time-stamp: 1730058029 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-purecn_2.10.0+dfsg-1.dsc] I: copying [./r-bioc-purecn_2.10.0+dfsg.orig.tar.xz] I: copying [./r-bioc-purecn_2.10.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:39:12 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-purecn_2.10.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-purecn in r-bioc-purecn-2.10.0+dfsg dpkg-source: info: unpacking r-bioc-purecn_2.10.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-purecn_2.10.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1757692/tmp/hooks/D01_modify_environment starting debug: Running on infom01-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 27 19:40 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1757692/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1757692/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=8e693b47762c41a1add4ac42b89b6b17 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1757692 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9ISgh39n/pbuilderrc_Ab6h --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9ISgh39n/b2 --logfile b2/build.log r-bioc-purecn_2.10.0+dfsg-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.1.0-26-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1757692/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-dnacopy (>= 1.78.0), r-bioc-variantannotation (>= 1.50.0), r-bioc-genomicranges (>= 1.56.1), r-bioc-iranges (>= 2.38.1), r-cran-rcolorbrewer, r-bioc-s4vectors (>= 0.42.1), r-cran-data.table, r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-genomeinfodb (>= 1.40.1), r-bioc-genomicfeatures (>= 1.56.0), r-bioc-rsamtools (>= 2.20.0), r-bioc-biobase (>= 2.64.0), r-bioc-biostrings (>= 2.72.1), r-bioc-biocgenerics (>= 0.50.0), r-bioc-rtracklayer (>= 1.64.0), r-cran-ggplot2, r-cran-gridextra, r-cran-futile.logger, r-cran-vgam, r-cran-mclust, r-bioc-rhdf5 (>= 2.48.0), r-cran-matrix dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dnacopy (>= 1.78.0); however: Package r-bioc-dnacopy is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-variantannotation (>= 1.50.0); however: Package r-bioc-variantannotation is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges (>= 1.56.1); however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-cran-data.table; however: Package r-cran-data.table is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb (>= 1.40.1); however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicfeatures (>= 1.56.0); however: Package r-bioc-genomicfeatures is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools (>= 2.20.0); however: Package r-bioc-rsamtools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase (>= 2.64.0); however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings (>= 2.72.1); however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.50.0); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer (>= 1.64.0); however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gridextra; however: Package r-cran-gridextra is not installed. pbuilder-satisfydepends-dummy depends on r-cran-futile.logger; however: Package r-cran-futile.logger is not installed. pbuilder-satisfydepends-dummy depends on r-cran-vgam; however: Package r-cran-vgam is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mclust; however: Package r-cran-mclust is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5 (>= 2.48.0); however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lmodern{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libbibtex-parser-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libio-html-perl{a} libio-string-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-lunr{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblatex-tounicode-perl{a} libldap-2.5-0{a} liblerc4{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} 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r-cran-data.table{a} r-cran-dbi{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-formatr{a} r-cran-fs{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-httpuv{a} r-cran-httr{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-later{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mclust{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-promises{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rsqlite{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-snow{a} r-cran-sourcetools{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vgam{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xml{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-bibtex-extra{a} texlive-binaries{a} texlive-latex-base{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts dvisvgm git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl lmodern lynx node-highlight.js node-jquery publicsuffix r-cran-bench r-cran-brio r-cran-cairo r-cran-callr r-cran-covr r-cran-dbitest r-cran-decor r-cran-desc r-cran-dichromat r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-formattable r-cran-future r-cran-generics r-cran-gert r-cran-gh r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmlwidgets r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-miniui r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-purrr r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-r.utils r-cran-ragg r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rpart r-cran-rprojroot r-cran-rsconnect r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-rvest r-cran-sf r-cran-shinyjs r-cran-sodium r-cran-spelling r-cran-stringi r-cran-survival r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-tufte r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 399 newly installed, 0 to remove and 0 not upgraded. Need to get 436 MB of archives. After unpacking 1320 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-1 [1381 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-14 [233 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B] Get: 40 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-7 [837 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.1-3 [28.3 MB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-7 [878 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-7 [11.7 MB] Get: 109 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-7 [11.9 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 111 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 112 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.5-2 [349 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-5 [153 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.42-4+b1 [234 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.42-4+b1 [55.8 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.42-4+b1 [755 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.44-2 [366 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1 [315 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5 [207 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5 [10.4 MB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b2 [21.9 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [189 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.4.1-3 [4512 B] Get: 137 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.4.0-1 [63.1 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.10.1-2 [360 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.10.10+repack-4 [23.5 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 javascript-common all 11+nmu1 [6260 B] Get: 192 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 194 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libbibtex-parser-perl all 1.05+dfsg-1 [17.4 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libsnappy1v5 amd64 1.2.1-1 [29.1 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libblosc1 amd64 1.21.5+ds-1+b1 [49.6 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-3.2 [10.6 MB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 202 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b4 [313 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2 [123 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.63.0-1 [115 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1 [77.4 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b1 [640 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [181 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.6-2 [439 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.6-2 [439 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2 [208 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b2 [98.0 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1 [1316 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.6-2 [1381 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b4 [67.7 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-1 [2742 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [368 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.10.1-2 [462 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-4 [130 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-4 [89.5 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-4 [40.5 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-4 [21.4 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.10.10+repack-4 [2652 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 238 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libjs-lunr all 2.3.9~dfsg-2 [76.6 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-4 [157 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.6-3+b1 [147 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-3 [35.1 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b1 [25.2 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-4 [49.1 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-4 [62.5 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1 [339 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-4 [114 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-6 [148 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.3 [56.2 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 r-cran-littler amd64 0.3.20-1 [102 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 littler all 0.3.20-1 [16.0 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB] Get: 269 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 r-bioc-biobase amd64 2.64.0-4 [2132 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4vectors amd64 0.42.1+dfsg-2 [1894 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 r-bioc-iranges amd64 2.38.1-1 [2305 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 r-cran-dbi all 1.2.3-1 [852 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 r-cran-blob all 1.2.4-1 [49.6 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 r-cran-rsqlite amd64 2.3.7-2 [1187 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 r-cran-curl amd64 5.2.3+dfsg-1 [178 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [401 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [9876 B] Get: 299 http://deb.debian.org/debian unstable/main amd64 r-bioc-xvector amd64 0.44.0-1 [622 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] Get: 302 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3843 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 r-bioc-biostrings amd64 2.72.1+dfsg-1 [13.3 MB] Get: 305 http://deb.debian.org/debian unstable/main amd64 r-bioc-keggrest all 1.44.1+dfsg-1 [183 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 r-bioc-annotationdbi all 1.66.0-1 [4682 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocio all 1.14.0+dfsg-1 [210 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get: 315 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocparallel amd64 1.38.0-2 [1325 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 r-cran-htmltools amd64 0.5.8.1-1 [378 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 r-cran-evaluate all 1.0.0-1 [112 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 r-cran-xfun amd64 0.48+dfsg-1 [544 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 r-cran-knitr all 1.48+dfsg-1 [912 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 r-cran-fs amd64 1.6.4+dfsg-1 [247 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get: 327 http://deb.debian.org/debian unstable/main amd64 r-cran-sass amd64 0.4.9+dfsg-1 [965 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 r-cran-tinytex all 0.53-1 [146 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 r-cran-rcpp amd64 1.0.13-1 [2082 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 r-cran-later amd64 1.3.2+dfsg-1 [118 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 r-cran-promises amd64 1.3.0+dfsg-1 [284 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [493 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 r-cran-withr all 3.0.1+dfsg-1 [226 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 r-cran-commonmark amd64 1.9.2-1 [122 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 r-cran-bookdown all 0.40+dfsg-1 [1404 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.18 [32.5 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 347 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2024.20240313.70630+ds-4 [8493 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2024.20240829-2 [22.7 MB] Get: 349 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2024.20240829-2 [1273 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 texlive-bibtex-extra all 2024.20240829-1 [79.9 MB] Get: 351 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocversion all 3.19.1-1 [10.9 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocstyle all 2.32.1+dfsg-1 [453 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicranges amd64 1.56.1+dfsg-1 [1842 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 r-cran-xml amd64 3.99-0.17-1 [1761 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 r-cran-bitops amd64 1.0-8-1 [30.7 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhtslib amd64 3.0.0+dfsg-1 [1334 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 r-bioc-rsamtools amd64 2.20.0+dfsg-1 [3600 kB] Get: 358 http://deb.debian.org/debian unstable/main amd64 r-cran-matrixstats amd64 1.4.1-1 [510 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 r-bioc-matrixgenerics all 1.16.0-2 [423 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4arrays amd64 1.4.1+dfsg-1 [524 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 r-bioc-sparsearray amd64 1.4.8+dfsg-1 [1254 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 r-bioc-delayedarray amd64 0.30.1+dfsg-1 [1847 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 r-bioc-summarizedexperiment all 1.34.0+dfsg-1 [1102 kB] Get: 367 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicalignments amd64 1.40.0-1 [2160 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [799 kB] Get: 369 http://deb.debian.org/debian unstable/main amd64 r-cran-rjson amd64 0.2.23-1 [100.0 kB] Get: 370 http://deb.debian.org/debian unstable/main amd64 r-cran-restfulr amd64 0.0.15-1 [382 kB] Get: 371 http://deb.debian.org/debian unstable/main amd64 r-bioc-rtracklayer amd64 1.64.0-1 [5061 kB] Get: 372 http://deb.debian.org/debian unstable/main amd64 r-bioc-bsgenome all 1.72.0-1 [6812 kB] Get: 373 http://deb.debian.org/debian unstable/main amd64 r-bioc-dnacopy amd64 1.78.0-1 [378 kB] Get: 374 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicfeatures all 1.56.0+dfsg-1 [918 kB] Get: 375 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhdf5lib amd64 1.26.0+dfsg-1 [104 kB] Get: 376 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhdf5filters amd64 1.16.0+dfsg-1 [139 kB] Get: 377 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhdf5 amd64 2.48.0+dfsg-3 [857 kB] Get: 378 http://deb.debian.org/debian unstable/main amd64 r-bioc-variantannotation amd64 1.50.0-1 [3508 kB] Get: 379 http://deb.debian.org/debian unstable/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB] Get: 380 http://deb.debian.org/debian unstable/main amd64 r-cran-data.table amd64 1.16.2+dfsg-1 [1978 kB] Get: 381 http://deb.debian.org/debian unstable/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get: 382 http://deb.debian.org/debian unstable/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Get: 383 http://deb.debian.org/debian unstable/main amd64 r-cran-gtable all 0.3.5+dfsg-1 [222 kB] Get: 384 http://deb.debian.org/debian unstable/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get: 385 http://deb.debian.org/debian unstable/main amd64 r-cran-mass amd64 7.3-61-1 [1112 kB] Get: 386 http://deb.debian.org/debian unstable/main amd64 r-cran-nlme amd64 3.1.166-1 [2330 kB] Get: 387 http://deb.debian.org/debian unstable/main amd64 r-cran-mgcv amd64 1.9-1-1 [3233 kB] Get: 388 http://deb.debian.org/debian unstable/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 389 http://deb.debian.org/debian unstable/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Get: 390 http://deb.debian.org/debian unstable/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 391 http://deb.debian.org/debian unstable/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 392 http://deb.debian.org/debian unstable/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get: 393 http://deb.debian.org/debian unstable/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get: 394 http://deb.debian.org/debian unstable/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 395 http://deb.debian.org/debian unstable/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get: 396 http://deb.debian.org/debian unstable/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get: 397 http://deb.debian.org/debian unstable/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get: 398 http://deb.debian.org/debian unstable/main amd64 r-cran-mclust amd64 6.1.1-1 [3981 kB] Get: 399 http://deb.debian.org/debian unstable/main amd64 r-cran-vgam amd64 1.1-11-1 [7756 kB] Fetched 436 MB in 19s (23.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... 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Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../029-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... 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Unpacking libblas3:amd64 (3.12.0-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../041-libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../042-libbrotli1_1.1.0-2+b4_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b4) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../043-libpng16-16t64_1.6.44-2_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../044-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../045-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. 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Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1+b1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1+b1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../059-libcairo2_1.18.2-2_amd64.deb ... Unpacking libcairo2:amd64 (1.18.2-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../060-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../061-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../062-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../063-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../064-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../065-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../066-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../067-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../068-libldap-2.5-0_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../069-libnghttp2-14_1.63.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.63.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../070-libpsl5t64_0.21.2-1.1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../071-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../072-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../073-libcurl4t64_8.10.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.10.1-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../074-libdeflate0_1.22-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.22-1) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../075-libglib2.0-0t64_2.82.2-2_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.82.2-2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../076-libjpeg62-turbo_1%3a2.1.5-3_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../077-libgfortran5_14.2.0-7_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-7) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../078-liblapack3_3.12.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3) ... Selecting previously unselected package fontconfig. Preparing to unpack .../079-fontconfig_2.15.0-1.1_amd64.deb ... Unpacking fontconfig (2.15.0-1.1) ... Selecting previously unselected package libfribidi0:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../091-libjbig0_2.1-6.1+b1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../098-libxft2_2.3.6-1+b1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../101-libtk8.6_8.6.15-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.15-1) ... Selecting previously unselected package libice6:amd64. 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Setting up r-bioc-matrixgenerics (1.16.0-2) ... Setting up r-cran-xfun (0.48+dfsg-1) ... Setting up r-cran-vgam (1.1-11-1) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (3.0.1+dfsg-1) ... Setting up r-cran-mime (0.12-2) ... Setting up libmoose-perl:amd64 (2.2207-1+b2) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-yaml (2.3.10-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-evaluate (1.0.0-1) ... Setting up r-cran-dbi (1.2.3-1) ... Setting up r-cran-highr (0.11+dfsg-1) ... Setting up r-cran-fansi (1.0.5-1) ... Setting up r-cran-mass (7.3-61-1) ... Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-4) ... Setting up r-cran-mclust (6.1.1-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-data.table (1.16.2+dfsg-1) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-bit (4.0.5-1) ... 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Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-gtable (0.3.5+dfsg-1) ... Setting up r-cran-later (1.3.2+dfsg-1) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-htmltools (0.5.8.1-1) ... Setting up r-cran-tinytex (0.53-1) ... Setting up r-cran-knitr (1.48+dfsg-1) ... Setting up r-cran-mgcv (1.9-1-1) ... Setting up r-bioc-dnacopy (1.78.0-1) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-cran-sass (0.4.9+dfsg-1) ... Setting up r-bioc-iranges (2.38.1-1) ... Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... Setting up r-cran-restfulr (0.0.15-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-openssl (2.2.0+dfsg-1) ... Setting up r-bioc-s4arrays (1.4.1+dfsg-1) ... Setting up r-bioc-biocparallel (1.38.0-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-rhtslib (3.0.0+dfsg-1) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-bioc-rhdf5lib (1.26.0+dfsg-1) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up r-bioc-biocio (1.14.0+dfsg-1) ... Setting up r-bioc-rhdf5filters (1.16.0+dfsg-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up texlive-bibtex-extra (2024.20240829-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.3.0+dfsg-1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.44.0-1) ... Setting up dh-r (20231212) ... Setting up r-cran-rsqlite (2.3.7-2) ... Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... Setting up r-bioc-sparsearray (1.4.8+dfsg-1) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-bioc-rhdf5 (2.48.0+dfsg-3) ... Setting up r-cran-httpuv (1.6.15+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up r-bioc-delayedarray (0.30.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.56.1+dfsg-1) ... Setting up r-bioc-biostrings (2.72.1+dfsg-1) ... Setting up r-cran-shiny (1.9.1+dfsg-1) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up r-bioc-rsamtools (2.20.0+dfsg-1) ... Setting up r-cran-bookdown (0.40+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.34.0+dfsg-1) ... Setting up r-bioc-keggrest (1.44.1+dfsg-1) ... Setting up r-bioc-annotationdbi (1.66.0-1) ... Setting up r-bioc-biocstyle (2.32.1+dfsg-1) ... Setting up r-bioc-genomicalignments (1.40.0-1) ... Setting up r-bioc-rtracklayer (1.64.0-1) ... Setting up r-bioc-genomicfeatures (1.56.0+dfsg-1) ... Setting up r-bioc-bsgenome (1.72.0-1) ... Setting up r-bioc-variantannotation (1.50.0-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1757692/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1757692/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-bioc-purecn-2.10.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-purecn_2.10.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-purecn dpkg-buildpackage: info: source version 2.10.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-purecn/ -O--buildsystem=R I: R Package: PureCN Version: 2.10.0 I: Building using R version 4.4.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 18 Aug 2024 12:38:44 +0200 mkdir -p /build/reproducible-path/r-bioc-purecn-2.10.0\+dfsg/debian/r-bioc-purecn/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-purecn-2.10.0\+dfsg/debian/r-bioc-purecn/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 18 Aug 2024 12:38:44 +0200'" * installing *source* package 'PureCN' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PureCN) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-bioc-dnacopy for Depends:DNAcopy I: Using r-bioc-variantannotation for Depends:VariantAnnotation (>= 1.14.1) I: Using r-bioc-biocparallel for Suggests:BiocParallel I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-pscbs for Suggests:PSCBS I: Using r-cran-r.utils for Suggests:R.utils W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene I: Using r-cran-covr for Suggests:covr I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-optparse for Suggests:optparse I: Using r-bioc-org.hs.eg.db for Suggests:org.Hs.eg.db I: Using r-cran-jsonlite for Suggests:jsonlite I: Using r-cran-markdown for Suggests:markdown I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-testthat for Suggests:testthat I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.20.3) I: Using r-bioc-iranges for Imports:IRanges (>= 2.2.1) I: Using r-cran-rcolorbrewer by changing version to for Imports:RColorBrewer I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-cran-data.table for Imports:data.table I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures I: Using r-bioc-rsamtools for Imports:Rsamtools I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-biostrings for Imports:Biostrings I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-rtracklayer for Imports:rtracklayer I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-cran-gridextra for Imports:gridExtra I: Using r-cran-futile.logger for Imports:futile.logger I: Using r-cran-vgam for Imports:VGAM I: Using r-cran-mclust for Imports:mclust I: Using r-bioc-rhdf5 for Imports:rhdf5 I: Using r-cran-matrix by changing version to for Imports:Matrix I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-purecn as Debian binary package for variables substitution debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/r-bioc-purecn-2.10.0+dfsg' dh_installdocs find debian \( -name "*.Rnw" -o -name "*.Rmd" \) -delete make[1]: Leaving directory '/build/reproducible-path/r-bioc-purecn-2.10.0+dfsg' dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-purecn' in '../r-bioc-purecn_2.10.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-purecn_2.10.0+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-purecn_2.10.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1757692/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1757692/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1757692 and its subdirectories I: Current time: Mon Oct 28 09:47:35 +14 2024 I: pbuilder-time-stamp: 1730058455