I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 7 16:15:35 +14 2026 I: pbuilder-time-stamp: 1767752135 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [qcat_1.1.0-7.dsc] I: copying [./qcat_1.1.0.orig.tar.gz] I: copying [./qcat_1.1.0-7.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 4 08:06:55 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./qcat_1.1.0-7.dsc: no acceptable signature found dpkg-source: info: extracting qcat in qcat-1.1.0 dpkg-source: info: unpacking qcat_1.1.0.orig.tar.gz dpkg-source: info: unpacking qcat_1.1.0-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying yaml_safe_load.patch dpkg-source: info: applying remove_six.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/823355/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 7 02:15 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/823355/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/823355/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=7f5425c3c7b14632adafad32474c6080 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=823355 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.txBGlmBP/pbuilderrc_b6qx --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.txBGlmBP/b2 --logfile b2/build.log qcat_1.1.0-7.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/823355/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-pytest-runner, python3-pytest, python3-pytest-cov, python3-biopython, python3-parasail, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-parasail; however: Package python3-parasail is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libparasail-dev{a} libparasail8{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-coverage{a} python3-freetype{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-parasail{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-pytest-cov{a} python3-pytest-runner{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-yaml{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 71.9 MB of archives. After unpacking 284 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 24 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.0-2 [856 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.0-2 [2038 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 79 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 103 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get: 104 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libparasail8 amd64 2.6.2+dfsg-2 [1890 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libparasail-dev amd64 2.6.2+dfsg-2 [1504 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [1992 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.0-2 [730 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-coverage amd64 7.6.0+dfsg1-2+b1 [177 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-parasail all 1.3.3-1 [38.6 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-pytest-runner all 2.11.1-4 [8432 B] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Fetched 71.9 MB in 4s (19.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20314 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... 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Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21375 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... Selecting previously unselected package python3.13-minimal. 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Preparing to unpack .../008-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../020-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../025-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../027-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../028-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../033-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../034-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../035-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../036-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../037-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. 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Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libparasail-dev:amd64 (2.6.2+dfsg-2) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 7 02:16:58 UTC 2026. Universal Time is now: Wed Jan 7 02:16:58 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.82.2-3) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b4) ... Setting up python3.13-minimal (3.13.0-2) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Setting up libwebpmux3:amd64 (1.4.0-0.1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libjs-jquery-metadata (12-4) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-wheel (0.45.1-1) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-coverage (7.6.0+dfsg1-2+b1) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-pytest-cov (5.0.0-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pytest-runner (2.11.1-4) ... Setting up dh-python (6.20241024) ... Setting up python3-parasail (1.3.3-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/823355/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/823355/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/qcat-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../qcat_1.1.0-7_source.changes dpkg-buildpackage: info: source package qcat dpkg-buildpackage: info: source version 1.1.0-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/eval.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/calibration.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/scanner_dual.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/eval_roc.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/scanner_epi2me.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/config.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/scanner_brill.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/scanner_guppy.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/scanner_simple.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/__init__.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/utils.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/eval_full.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/scanner.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/cli.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/layout.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/adapters.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat copying qcat/scanner_base.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat creating /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/simple_extended.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/NBD104_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/NBD114_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/PBC001_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RAB201_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RAB214_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/VMK001.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RAB214_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/PBC096_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RAB201_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RAB201_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RAB214_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/simple_standard.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/NBD114_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/DUAL_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RBK004.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/DUAL_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RBK001.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/PBC096_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/RPB004_RLB001.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/NBD104_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/PBC001_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits copying qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: cp -r /build/reproducible-path/qcat-1.1.0/qcat/test /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat ; I: pybuild base:311: cd /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build configfile: pytest.ini testpaths: qcat plugins: cov-5.0.0, typeguard-4.4.1 collecting ... collected 14 items qcat/test/test_barcode.py::test_get_placeholder PASSED [ 7%] qcat/test/test_barcode.py::test_barcode PASSED [ 14%] qcat/test/test_barcode.py::test_scanner_find_best_adapter_template PASSED [ 21%] qcat/test/test_barcode.py::test_barcode_rapidkit PASSED [ 28%] qcat/test/test_barcode.py::test_scanner_detect_barcode_generic PASSED [ 35%] qcat/test/test_barcode.py::test_utils PASSED [ 42%] qcat/test/test_barcode.py::test_scanner_ectract_align_sequence PASSED [ 50%] qcat/test/test_barcode.py::test_adapter_layout PASSED [ 57%] qcat/test/test_barcode.py::test_full_run_rad003 PASSED [ 64%] qcat/test/test_barcode.py::test_full_run_nbd103 PASSED [ 71%] qcat/test/test_barcode.py::test_full_run_pbk004 PASSED [ 78%] qcat/test/test_barcode.py::test_full_run_rab204 PASSED [ 85%] qcat/test/test_barcode.py::test_full_run_rbk004 PASSED [ 92%] qcat/test/test_barcode.py::test_trimming PASSED [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441 /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441: PytestConfigWarning: Unknown config option: log_print self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") qcat/adapters.py:7 /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/adapters.py:7: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.12.7-final-0 ----------- Name Stmts Miss Cover Missing --------------------------------------------------------- qcat/__init__.py 2 0 100% qcat/adapters.py 102 38 63% 19-24, 28-31, 35-40, 44, 55, 81-83, 104-105, 109-118, 130-132, 134-135, 146-149 qcat/calibration.py 0 0 100% qcat/cli.py 282 222 21% 20-31, 35-38, 42-47, 61-196, 217-230, 255-256, 275-277, 285-301, 305, 310-323, 329-356, 361-362, 366-372, 376-382, 386-403, 418-434, 469-562, 566-574, 586-633, 638 qcat/config.py 106 32 70% 29, 58-59, 78-79, 98-99, 118, 137, 156, 177, 200, 209-234, 263-275 qcat/eval.py 117 117 0% 1-182 qcat/eval_full.py 132 132 0% 1-241 qcat/eval_roc.py 50 50 0% 1-105 qcat/layout.py 108 25 77% 34, 38, 56, 65, 99, 114, 129, 141-143, 155-166, 188, 206, 213, 230, 238 qcat/scanner.py 45 21 53% 10-11, 40-45, 55-60, 70-75, 94-98, 111 qcat/scanner_base.py 284 111 61% 8-11, 24-26, 107, 123, 165-188, 212, 248-255, 279-285, 339, 344, 456, 464, 477, 481-519, 529, 590-591, 594-595, 607-611, 614-616, 620-630, 634-642, 646-654, 658-660, 664-678, 682-689, 693-704, 707-712, 717-733 qcat/scanner_brill.py 77 77 0% 1-138 qcat/scanner_dual.py 41 31 24% 15-29, 33, 56-146 qcat/scanner_epi2me.py 42 9 79% 17, 92, 107-125 qcat/scanner_guppy.py 56 32 43% 13, 46-77, 87-111, 118-120, 125-131 qcat/scanner_simple.py 28 17 39% 14-31, 35, 38-41, 68-87 qcat/test/__init__.py 0 0 100% qcat/test/test_barcode.py 273 5 98% 591-597 qcat/utils.py 22 0 100% --------------------------------------------------------- TOTAL 1767 919 48% ================== 14 passed, 2 warnings in 142.97s (0:02:22) ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/qcat-1.1.0/debian/tmp /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/.coverage -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/README.md -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/.gitignore -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/eval.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/calibration.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/test_barcode.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/__init__.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/__pycache__/test_barcode.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/__pycache__ creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/data/rab204.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/data/nbd103.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/data/rbk004.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/data/pbk004.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/data/barcode_1k.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/test/data/nobarcode_1k.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/scanner_dual.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/eval_roc.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/scanner_epi2me.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/config.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/scanner_brill.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/simple_extended.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/NBD104_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/NBD114_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/PBC001_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RAB201_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RAB214_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/VMK001.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RAB214_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/PBC096_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RAB201_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RAB201_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RAB214_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/simple_standard.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/NBD114_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/DUAL_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RBK004.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/DUAL_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RBK001.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/PBC096_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/RPB004_RLB001.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/NBD104_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/PBC001_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/scanner_guppy.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/scanner_simple.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__init__.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/utils.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/eval_full.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/scanner.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/cli.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/calibration.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/adapters.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/scanner_dual.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/scanner_guppy.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/scanner_base.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/scanner_epi2me.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/scanner.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/layout.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/config.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/__pycache__/scanner_simple.cpython-312.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/layout.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/adapters.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.12/build/qcat/scanner_base.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/eval.py to eval.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/calibration.py to calibration.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/test_barcode.py to test_barcode.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/test/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/scanner_dual.py to scanner_dual.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/eval_roc.py to eval_roc.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/scanner_epi2me.py to scanner_epi2me.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/config.py to config.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/scanner_brill.py to scanner_brill.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/scanner_guppy.py to scanner_guppy.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/scanner_simple.py to scanner_simple.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/eval_full.py to eval_full.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/scanner.py to scanner.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/layout.py to layout.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/adapters.py to adapters.cpython-312.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat/scanner_base.py to scanner_base.cpython-312.pyc running install_egg_info running egg_info creating qcat.egg-info writing qcat.egg-info/PKG-INFO writing dependency_links to qcat.egg-info/dependency_links.txt writing entry points to qcat.egg-info/entry_points.txt writing requirements to qcat.egg-info/requires.txt writing top-level names to qcat.egg-info/top_level.txt writing manifest file 'qcat.egg-info/SOURCES.txt' reading manifest file 'qcat.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'qcat.egg-info/SOURCES.txt' Copying qcat.egg-info to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.12/dist-packages/qcat-1.1.0.egg-info Skipping SOURCES.txt running install_scripts Installing qcat script to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-eval script to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-eval-truth script to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-roc script to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/bin dh_install -O--buildsystem=pybuild debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/qcat-1.1.0' find debian -name .coverage -delete mkdir -p debian/qcat-examples/usr/share/doc/qcat/examples/qcat mv debian/qcat/usr/lib/python3*/dist-packages/qcat/test debian/qcat-examples/usr/share/doc/qcat/examples/qcat find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/qcat-1.1.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'qcat' in '../qcat_1.1.0-7_all.deb'. dpkg-deb: building package 'qcat-examples' in '../qcat-examples_1.1.0-7_all.deb'. dpkg-genbuildinfo --build=binary -O../qcat_1.1.0-7_amd64.buildinfo dpkg-genchanges --build=binary -O../qcat_1.1.0-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/823355/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/823355/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/823355 and its subdirectories I: Current time: Wed Jan 7 16:25:54 +14 2026 I: pbuilder-time-stamp: 1767752754