I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 27 14:02:50 +14 2024 I: pbuilder-time-stamp: 1732665770 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyvcf_0.6.8+git20170215.476169c-11.dsc] I: copying [./python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz] I: copying [./python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 26 16:31:05 2024 gpgv: using RSA key 52D5BD0E7D4DB084E34B5865D4A41CFADDB20DB5 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-11.dsc: no acceptable signature found dpkg-source: info: extracting python-pyvcf in python-pyvcf-0.6.8+git20170215.476169c dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-setuptools.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying quitechar.patch dpkg-source: info: applying replace-pkg-resources-with-importlib.patch dpkg-source: info: applying replace-distutils-with-setuptools.patch dpkg-source: info: applying use-raw-strings-for-regex.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3591651/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 27 00:03 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3591651/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3591651/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=4339656ade0748c7a7da5bd76689423b LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3591651 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QJIDbGcM/pbuilderrc_IWjV --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QJIDbGcM/b2 --logfile b2/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3591651/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19973 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 61.0 MB of archives. After unpacking 276 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.0-2 [856 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.0-2 [2038 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-1+b1 [3157 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-1 [64.9 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.7-3 [2153 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.7-3 [5124 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.7-1 [9976 B] Get: 90 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [1992 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.0-2 [2137 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.0-2 [4994 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.12.7-1 [1072 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.0-2 [730 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.7-1 [1052 B] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.7-1 [26.1 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.0-2 [504 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.12.7-1 [1076 B] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-pysam amd64 0.22.1+ds-2+b2 [4412 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Fetched 61.0 MB in 18s (3479 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19973 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. 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Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Nov 27 00:05:02 UTC 2024. Universal Time is now: Wed Nov 27 00:05:02 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.0-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... Setting up libpython3.13:amd64 (3.13.0-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:amd64 (3.13.0-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.13-dev (3.13.0-2) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:amd64 (3.12.7-3) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:amd64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pysam (0.22.1+ds-2+b2) ... Setting up libpython3-dev:amd64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:amd64 (3.12.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-all-dev (3.12.7-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3591651/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3591651/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-11_source.changes dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running egg_info creating PyVCF.egg-info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling vcf/cparse.pyx because it changed. [1/1] Cythonizing vcf/cparse.pyx building 'vcf.cparse' extension creating build/temp.linux-x86_64-cpython-313/vcf x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c vcf/cparse.c -o build/temp.linux-x86_64-cpython-313/vcf/cparse.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/vcf/cparse.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/vcf_melt -> build/scripts-3.13 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.13 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.13 changing mode of build/scripts-3.13/vcf_melt from 644 to 755 changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.13/vcf_sample_filter.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test running build_ext building 'vcf.cparse' extension creating build/temp.linux-x86_64-cpython-312/vcf x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c vcf/cparse.c -o build/temp.linux-x86_64-cpython-312/vcf/cparse.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/vcf/cparse.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/cparse.cpython-312-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/vcf_melt -> build/scripts-3.12 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.12 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.12 changing mode of build/scripts-3.12/vcf_melt from 644 to 755 changing mode of build/scripts-3.12/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.12/vcf_sample_filter.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.1 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 4.51s ======================== I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.1 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 5.60s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/test_vcf.cpython-313-pytest-8.3.3.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/sample_filter.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/sample_filter.py to sample_filter.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/model.py to model.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/parser.py to parser.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/prof.py to prof.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/filters.py to filters.cpython-313.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/cparse.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/__pycache__/test_vcf.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/model.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/filters.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/sample_filter.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/sample_filter.py to sample_filter.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/model.py to model.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/prof.py to prof.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/filters.py to filters.cpython-312.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.12/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.12/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.12/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf find debian/python3-vcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf mkdir -p debian/pyvcf/usr mv debian/python3-vcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_python3 --verbose D: dh_python3 dh_python3:180: version: 6.20241024 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '--verbose'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.12) D: dh_python3 debhelper:166: skipping package python-pyvcf-examples (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf'] D: dh_python3 dh_python3:205: processing package python3-vcf... D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.12/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.13/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-vcf details = {'requires.txt': set(), 'egg-info': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-vcf D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3:any', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:205: processing package pyvcf... D: dh_python3 fs:338: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyvcf D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb'. dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb'. dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-11_all.deb'. dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3591651/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3591651/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3591651 and its subdirectories I: Current time: Wed Nov 27 14:06:51 +14 2024 I: pbuilder-time-stamp: 1732666011