I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 28 17:18:55 +14 2024 I: pbuilder-time-stamp: 1714274335 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyomop_4.2.0-2.dsc] I: copying [./python-pyomop_4.2.0.orig.tar.gz] I: copying [./python-pyomop_4.2.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Apr 26 12:33:11 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pyomop_4.2.0-2.dsc: no acceptable signature found dpkg-source: info: extracting python-pyomop in python-pyomop-4.2.0 dpkg-source: info: unpacking python-pyomop_4.2.0.orig.tar.gz dpkg-source: info: unpacking python-pyomop_4.2.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Do-not-treat-src-directory-as-a-Python-package.patch dpkg-source: info: applying 0002-Remove-remote-badges-to-prevent-privacy-issues.patch dpkg-source: info: applying 0003-Use-local-objects.inv-in-intersphinx-mapping.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4104564/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 28 03:19 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4104564/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4104564/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=14e8d7f69170461fa5d516f88f23e778 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4104564 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SBhmhBgu/pbuilderrc_1lL8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SBhmhBgu/b2 --logfile b2/build.log python-pyomop_4.2.0-2.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 27 07:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4104564/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, pybuild-plugin-pyproject, python-pandas-doc, python-scipy-doc, python-sklearn-doc, python3-aiosqlite, python3-all, python3-click, python3-doc, python3-pandas, python3-pytest, python3-recommonmark, python3-scipy, python3-setuptools, python3-setuptools-scm, python3-sphinx, python3-sqlalchemy, sphinx-doc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19697 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python-pandas-doc; however: Package python-pandas-doc is not installed. pbuilder-satisfydepends-dummy depends on python-scipy-doc; however: Package python-scipy-doc is not installed. pbuilder-satisfydepends-dummy depends on python-sklearn-doc; however: Package python-sklearn-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-aiosqlite; however: Package python3-aiosqlite is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-doc; however: Package python3-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-recommonmark; however: Package python3-recommonmark is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sqlalchemy; however: Package python3-sqlalchemy is not installed. pbuilder-satisfydepends-dummy depends on sphinx-doc; however: Package sphinx-doc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} docutils-doc{a} dwz{a} file{a} fonts-mathjax{a} fonts-open-sans{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-bootstrap4{a} libjs-jquery{a} libjs-mathjax{a} libjs-popper.js{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblapack3{a} liblbfgsb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-pandas-doc{a} python-requests-doc{a} python-scipy-doc{a} python-sklearn-doc{a} python3{a} python3-aiosqlite{a} python3-alabaster{a} python3-all{a} python3-babel{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-commonmark{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-doc{a} python3-docutils{a} python3-greenlet{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-installer{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pyproject-hooks{a} python3-pytest{a} python3-recommonmark{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sqlalchemy{a} python3-toml{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-wheel{a} python3.11{a} python3.11-doc{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-doc{a} tzdata{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx node-jquery python3-bottleneck python3-bs4 python3-html5lib python3-lxml python3-matplotlib python3-numba python3-numexpr python3-odf python3-openpyxl python3-pil python3-sqlalchemy-ext python3-tables wget 0 packages upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 198 MB of archives. After unpacking 784 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-3 [255 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 42 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240422 [107 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 docutils-doc all 0.20.1+dfsg-3 [1114 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 fonts-open-sans all 1.11-2 [574 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 javascript-common all 11+nmu1 [6260 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.0.0-2 [10.6 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.43.0-1 [52.5 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.1.1-1 [32.5 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20240422 [11.1 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python-pandas-doc all 2.1.4+dfsg-7 [49.1 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 python-requests-doc all 2.31.0+dfsg-1 [190 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python-scipy-doc all 1.11.4-6 [35.4 MB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python-sklearn-doc all 1.4.2+dfsg-1 [52.8 MB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-aiosqlite all 0.17.0-2 [16.2 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.7-1 [94.0 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-commonmark all 0.9.1-6 [45.3 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3.11-doc all 3.11.9-1 [12.6 MB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-doc all 3.11.8-1 [9528 B] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-roman all 3.3-3 [9880 B] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-greenlet amd64 3.0.1-3 [177 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.6-2 [37.0 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-7 [7883 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.1.4+dfsg-7 [3015 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.1.1-2 [245 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 7.2.6-6 [702 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.2.6-6 [552 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-recommonmark all 0.7.1+ds-5 [17.3 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-sqlalchemy all 1.4.50+ds1-1 [1009 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 sphinx-doc all 7.2.6-6 [2375 kB] Fetched 198 MB in 20s (10.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19697 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21019 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. 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Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up python3.11-doc (3.11.9-1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up python-requests-doc (2.31.0+dfsg-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up xml-core (0.19) ... Setting up python3-doc (3.11.8-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up sphinx-doc (7.2.6-6) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python-sklearn-doc (1.4.2+dfsg-1) ... Setting up sphinx-common (7.2.6-6) ... Setting up python-scipy-doc (1.11.4-6) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... 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Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up dh-python (6.20240422) ... Setting up python3-scipy (1.11.4-6) ... Setting up pybuild-plugin-pyproject (6.20240422) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Setting up python3-pandas (2.1.4+dfsg-7) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-6) ... Setting up python3-recommonmark (0.7.1+ds-5) ... /usr/lib/python3/dist-packages/recommonmark/transform.py:254: SyntaxWarning: invalid escape sequence '\w' match = re.search('[ ]?[\w_-]+::.*', language) Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/4104564/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/4104564/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-pyomop-4.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pyomop_4.2.0-2_source.changes dpkg-buildpackage: info: source package python-pyomop dpkg-buildpackage: info: source version 4.2.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/python-pyomop-4.2.0' rm -rf /build/reproducible-path/python-pyomop-4.2.0/docs/.build make[1]: Leaving directory '/build/reproducible-path/python-pyomop-4.2.0' debian/rules binary dh binary --with sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.12 * Building wheel... /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'author-email' will not be supported in future versions. Please use the underscore name 'author_email' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'long-description' will not be supported in future versions. Please use the underscore name 'long_description' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'long-description-content-type' will not be supported in future versions. Please use the underscore name 'long_description_content_type' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pyomop copying src/pyomop/engine_factory.py -> build/lib/pyomop copying src/pyomop/__init__.py -> build/lib/pyomop copying src/pyomop/sqldict.py -> build/lib/pyomop copying src/pyomop/main.py -> build/lib/pyomop copying src/pyomop/__main__.py -> build/lib/pyomop copying src/pyomop/vector.py -> build/lib/pyomop copying src/pyomop/cdm6_tables.py -> build/lib/pyomop copying src/pyomop/vocabulary.py -> build/lib/pyomop running egg_info creating src/pyomop.egg-info writing src/pyomop.egg-info/PKG-INFO writing dependency_links to src/pyomop.egg-info/dependency_links.txt writing entry points to src/pyomop.egg-info/entry_points.txt writing requirements to src/pyomop.egg-info/requires.txt writing top-level names to src/pyomop.egg-info/top_level.txt writing manifest file 'src/pyomop.egg-info/SOURCES.txt' reading manifest file 'src/pyomop.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' adding license file 'AUTHORS.md' writing manifest file 'src/pyomop.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/engine_factory.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/__init__.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/sqldict.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/main.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/__main__.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/vector.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/cdm6_tables.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/vocabulary.py -> build/bdist.linux-x86_64/wheel/pyomop running install_egg_info Copying src/pyomop.egg-info to build/bdist.linux-x86_64/wheel/pyomop-4.2.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pyomop-4.2.0.dist-info/WHEEL creating '/build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.12/.tmp-0cblliyo/pyomop-4.2.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pyomop/__init__.py' adding 'pyomop/__main__.py' adding 'pyomop/cdm6_tables.py' adding 'pyomop/engine_factory.py' adding 'pyomop/main.py' adding 'pyomop/sqldict.py' adding 'pyomop/vector.py' adding 'pyomop/vocabulary.py' adding 'pyomop-4.2.0.dist-info/AUTHORS.md' adding 'pyomop-4.2.0.dist-info/LICENSE.txt' adding 'pyomop-4.2.0.dist-info/METADATA' adding 'pyomop-4.2.0.dist-info/WHEEL' adding 'pyomop-4.2.0.dist-info/entry_points.txt' adding 'pyomop-4.2.0.dist-info/top_level.txt' adding 'pyomop-4.2.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built pyomop-4.2.0-py2.py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.11 * Building wheel... /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'author-email' will not be supported in future versions. Please use the underscore name 'author_email' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'long-description' will not be supported in future versions. Please use the underscore name 'long_description' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'long-description-content-type' will not be supported in future versions. Please use the underscore name 'long_description_content_type' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running bdist_wheel running build running build_py running egg_info writing src/pyomop.egg-info/PKG-INFO writing dependency_links to src/pyomop.egg-info/dependency_links.txt writing entry points to src/pyomop.egg-info/entry_points.txt writing requirements to src/pyomop.egg-info/requires.txt writing top-level names to src/pyomop.egg-info/top_level.txt reading manifest file 'src/pyomop.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' adding license file 'AUTHORS.md' writing manifest file 'src/pyomop.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/engine_factory.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/__init__.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/sqldict.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/main.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/__main__.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/vector.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/cdm6_tables.py -> build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/vocabulary.py -> build/bdist.linux-x86_64/wheel/pyomop running install_egg_info Copying src/pyomop.egg-info to build/bdist.linux-x86_64/wheel/pyomop-4.2.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pyomop-4.2.0.dist-info/WHEEL creating '/build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.11/.tmp-1_egage5/pyomop-4.2.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pyomop/__init__.py' adding 'pyomop/__main__.py' adding 'pyomop/cdm6_tables.py' adding 'pyomop/engine_factory.py' adding 'pyomop/main.py' adding 'pyomop/sqldict.py' adding 'pyomop/vector.py' adding 'pyomop/vocabulary.py' adding 'pyomop-4.2.0.dist-info/AUTHORS.md' adding 'pyomop-4.2.0.dist-info/LICENSE.txt' adding 'pyomop-4.2.0.dist-info/METADATA' adding 'pyomop-4.2.0.dist-info/WHEEL' adding 'pyomop-4.2.0.dist-info/entry_points.txt' adding 'pyomop-4.2.0.dist-info/top_level.txt' adding 'pyomop-4.2.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built pyomop-4.2.0-py2.py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.12/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.1.1, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.12/build configfile: setup.cfg collecting ... collected 6 items tests/test_a_pyomop.py::test_create_cohort PASSED [ 16%] tests/test_ab_vector.py::test_create_patient PASSED [ 33%] tests/test_b_create_vocab.py::test_create_tables PASSED [ 50%] tests/test_b_create_vocab.py::test_create_vocab PASSED [ 66%] tests/test_c_vocab.py::test_vocab PASSED [ 83%] tests/test_d_vector.py::test_create_vector PASSED [100%] =============================== warnings summary =============================== tests/test_a_pyomop.py::test_create_cohort tests/test_a_pyomop.py::test_create_cohort tests/test_ab_vector.py::test_create_patient tests/test_ab_vector.py::test_create_patient tests/test_ab_vector.py::test_create_patient tests/test_ab_vector.py::test_create_patient tests/test_d_vector.py::test_create_vector tests/test_d_vector.py::test_create_vector /usr/lib/python3/dist-packages/aiosqlite/core.py:102: DeprecationWarning: The default datetime adapter is deprecated as of Python 3.12; see the sqlite3 documentation for suggested replacement recipes result = function() tests/test_b_create_vocab.py::test_create_tables /usr/lib/python3.12/threading.py:299: SAWarning: The garbage collector is trying to clean up connection >. This feature is unsupported on unsupported on asyncio dbapis that lack a "terminate" feature, since no IO can be performed at this stage to reset the connection. Please close out all connections when they are no longer used, calling ``close()`` or using a context manager to manage their lifetime. def __enter__(self): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 6 passed, 9 warnings in 132.64s (0:02:12) =================== I: pybuild pybuild:334: rm -rf /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.12/build/cdm6.sqlite /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.12/build/.pytest_cache I: pybuild base:311: cd /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.11/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.1, pluggy-1.5.0 -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.11/build configfile: setup.cfg collecting ... collected 6 items tests/test_a_pyomop.py::test_create_cohort PASSED [ 16%] tests/test_ab_vector.py::test_create_patient PASSED [ 33%] tests/test_b_create_vocab.py::test_create_tables PASSED [ 50%] tests/test_b_create_vocab.py::test_create_vocab PASSED [ 66%] tests/test_c_vocab.py::test_vocab PASSED [ 83%] tests/test_d_vector.py::test_create_vector PASSED [100%] =============================== warnings summary =============================== tests/test_b_create_vocab.py::test_create_tables /usr/lib/python3.11/queue.py:179: SAWarning: The garbage collector is trying to clean up connection >. This feature is unsupported on unsupported on asyncio dbapis that lack a "terminate" feature, since no IO can be performed at this stage to reset the connection. Please close out all connections when they are no longer used, calling ``close()`` or using a context manager to manage their lifetime. raise Empty -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =================== 6 passed, 1 warning in 130.29s (0:02:10) =================== I: pybuild pybuild:334: rm -rf /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.11/build/cdm6.sqlite /build/reproducible-path/python-pyomop-4.2.0/.pybuild/cpython3_3.11/build/.pytest_cache create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild debian/rules execute_before_dh_sphinxdoc make[1]: Entering directory '/build/reproducible-path/python-pyomop-4.2.0' PYTHONPATH=/build/reproducible-path/python-pyomop-4.2.0 python3 -m sphinx -b html -d /build/reproducible-path/python-pyomop-4.2.0/docs/.build/.doctrees -N /build/reproducible-path/python-pyomop-4.2.0/docs /build/reproducible-path/python-pyomop-4.2.0/debian/python-pyomop-doc/usr/share/doc/python-pyomop-doc/html Running Sphinx v7.2.6 Creating file /build/reproducible-path/python-pyomop-4.2.0/docs/api/pyomop.rst. Creating file /build/reproducible-path/python-pyomop-4.2.0/docs/api/modules.rst. making output directory... done loading intersphinx inventory from /usr/share/doc/python3.11/html/objects.inv... loading intersphinx inventory from /usr/share/doc/sphinx-doc/html/objects.inv... loading intersphinx inventory from /usr/share/doc/python-sklearn-doc/html/objects.inv... loading intersphinx inventory from /usr/share/doc/python-scipy-doc/html/objects.inv... [autosummary] generating autosummary for: api/modules.rst, api/pyomop.rst, authors.md, changelog.md, index.md, license.rst, readme.md /build/reproducible-path/python-pyomop-4.2.0/docs/../src/pyomop/main.py:36: SyntaxWarning: "is not" with a literal. Did you mean "!="? if vocab is not '': building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] api/modules reading sources... [ 29%] api/pyomop reading sources... [ 43%] authors /usr/lib/python3/dist-packages/recommonmark/parser.py:75: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 57%] changelog /usr/lib/python3/dist-packages/recommonmark/parser.py:75: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 71%] index /usr/lib/python3/dist-packages/recommonmark/parser.py:75: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 86%] license reading sources... [100%] readme /usr/lib/python3/dist-packages/recommonmark/parser.py:75: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) LICENSE.txt:11: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:14: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:23: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:30: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:35: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:41: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:45: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:51: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:62: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:69: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:78: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:81: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:85: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:90: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:93: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:100: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:104: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:115: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:119: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:124: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:135: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:148: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:152: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:157: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:165: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:176: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:182: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:188: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:198: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:206: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:211: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:236: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:248: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:294: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:298: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:311: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:319: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:330: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:338: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:346: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:355: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:362: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:389: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:399: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:404: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:410: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:416: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:423: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:430: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:438: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:449: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:454: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:464: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:474: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:478: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:488: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:493: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:500: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:514: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:522: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:537: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:543: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:555: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:566: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:571: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:580: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:585: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:592: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:603: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:615: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:626: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:630: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:653: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:657: WARNING: Inline interpreted text or phrase reference start-string without end-string. LICENSE.txt:657: WARNING: Inline interpreted text or phrase reference start-string without end-string. LICENSE.txt:661: WARNING: Inline interpreted text or phrase reference start-string without end-string. LICENSE.txt:661: WARNING: Inline interpreted text or phrase reference start-string without end-string. LICENSE.txt:666: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:671: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 14%] api/modules writing output... [ 29%] api/pyomop writing output... [ 43%] authors writing output... [ 57%] changelog writing output... [ 71%] index writing output... [ 86%] license writing output... [100%] readme generating indices... genindex py-modindex done highlighting module code... [ 20%] pyomop.cdm6_tables highlighting module code... [ 40%] pyomop.engine_factory highlighting module code... [ 60%] pyomop.main highlighting module code... [ 80%] pyomop.vector highlighting module code... [100%] pyomop.vocabulary writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 79 warnings. The HTML pages are in debian/python-pyomop-doc/usr/share/doc/python-pyomop-doc/html. make[1]: Leaving directory '/build/reproducible-path/python-pyomop-4.2.0' dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/python-pyomop-4.2.0' PYTHONPATH=/build/reproducible-path/python-pyomop-4.2.0/src help2man --no-discard-stderr -n 'OHSDI OMOP Common Data Model tools' /build/reproducible-path/python-pyomop-4.2.0/debian/tmp/usr/bin/pyomop >/build/reproducible-path/python-pyomop-4.2.0/pyomop.1 make[1]: Leaving directory '/build/reproducible-path/python-pyomop-4.2.0' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pyomop-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'pyomop' in '../pyomop_4.2.0-2_all.deb'. dpkg-deb: building package 'python-pyomop-doc' in '../python-pyomop-doc_4.2.0-2_all.deb'. dpkg-deb: building package 'python3-pyomop' in '../python3-pyomop_4.2.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyomop_4.2.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pyomop_4.2.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4104564/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4104564/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4104564 and its subdirectories I: Current time: Sun Apr 28 17:39:17 +14 2024 I: pbuilder-time-stamp: 1714275557