I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 17 14:11:16 +14 2024 I: pbuilder-time-stamp: 1734394276 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [promod3_3.4.1+ds-1.dsc] I: copying [./promod3_3.4.1+ds.orig.tar.xz] I: copying [./promod3_3.4.1+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 16 14:52:02 2024 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./promod3_3.4.1+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting promod3 in promod3-3.4.1+ds dpkg-source: info: unpacking promod3_3.4.1+ds.orig.tar.xz dpkg-source: info: unpacking promod3_3.4.1+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find-OST.patch dpkg-source: info: applying add-python3-shebangs.patch dpkg-source: info: applying promod-executable.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2334390/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 17 00:12 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2334390/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2334390/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=c19bc04e82524c26bd225e05bc46f5aa LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2334390 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2OEiU2yf/pbuilderrc_HoO6 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2OEiU2yf/b2 --logfile b2/build.log promod3_3.4.1+ds-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2334390/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-python-dev, libboost-test-dev, libeigen3-dev, libost-base-dev, libost-conop-dev, libost-geom-dev, libost-img-dev, libost-info-dev, libost-io-dev, libost-mol-alg-dev, libost-mol-dev, libost-mol-mm-dev, libost-seq-alg-dev, libost-seq-dev, libsqlite3-dev, openstructure (>= 2.5.0), python3-dev, python3-ost dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-test-dev; however: Package libboost-test-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-base-dev; however: Package libost-base-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-conop-dev; however: Package libost-conop-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-geom-dev; however: Package libost-geom-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-img-dev; however: Package libost-img-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-info-dev; however: Package libost-info-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-io-dev; however: Package libost-io-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-mol-alg-dev; however: Package libost-mol-alg-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-mol-dev; however: Package libost-mol-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-mol-mm-dev; however: Package libost-mol-mm-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-seq-alg-dev; however: Package libost-seq-alg-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-seq-dev; however: Package libost-seq-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on openstructure (>= 2.5.0); however: Package openstructure is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ost; however: Package python3-ost is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcups2t64{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu72{a} libimagequant0{a} libinput-bin{a} libinput10{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libnghttp2-14{a} libnsl2{a} libopengl0{a} libopenjp2-7{a} libopenmm8.1{a} libost-base-dev{a} libost-base2.9{a} libost-bindings2.9{a} libost-conop-dev{a} libost-conop2.9{a} libost-db2.9{a} libost-geom-dev{a} libost-geom2.9{a} libost-gfx2.9{a} libost-gui2.9{a} libost-img-alg2.9{a} libost-img-dev{a} libost-img2.9{a} libost-info-dev{a} libost-info2.9{a} libost-io-dev{a} libost-io2.9{a} libost-mol-alg-dev{a} libost-mol-alg2.9{a} libost-mol-dev{a} libost-mol-mm-dev{a} libost-mol-mm2.9{a} libost-mol2.9{a} libost-seq-alg-dev{a} libost-seq-alg2.9{a} libost-seq-dev{a} libost-seq2.9{a} libparasail8{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libraqm0{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libsqlite3-dev{a} libssh2-1t64{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} openstructure{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-ost{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pyparsing{a} python3-pyqt5{a} python3-pyqt5.sip{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus isympy-common javascript-common krb5-locales libarchive-cpio-perl libcifpp-data libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-olefile python3-pooch qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xdg-user-dirs 0 packages upgraded, 309 newly installed, 0 to remove and 0 not upgraded. Need to get 322 MB of archives. After unpacking 1258 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-3 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-3 [280 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b3 [27.8 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b3 [54.6 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.2-1 [2267 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.2-1 [11.9 MB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.21 [88.9 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.21 [919 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-15 [112 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-15 [44.1 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.15.92-1 [177 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-15 [48.1 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4 [234 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4 [235 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4 [282 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-4 [230 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-4 [231 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4 [298 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 117 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-4 [330 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-4 [346 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4 [261 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 122 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4 [347 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4 [375 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 125 http://deb.debian.org/debian unstable/main amd64 libboost-python1.83.0 amd64 1.83.0-4 [320 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.8-3 [2154 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.8-3 [5134 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.7-1 [9976 B] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.8-3 [505 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-2 [30.3 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.7-1 [26.1 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libboost-python1.83-dev amd64 1.83.0-4 [328 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libboost-python-dev amd64 1.83.0.2+b2 [3892 B] Get: 138 http://deb.debian.org/debian unstable/main amd64 libboost-test1.83.0 amd64 1.83.0-4 [471 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libboost-test1.83-dev amd64 1.83.0-4 [541 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libboost-test-dev amd64 1.83.0.2+b2 [3628 B] Get: 141 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-4 [269 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.10-2 [251 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libdouble-conversion3 amd64 3.3.0-1+b2 [41.8 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 146 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libwayland-server0 amd64 1.23.0-1+b1 [34.2 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libglapi-mesa amd64 24.2.8-1 [38.0 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.5-1 [26.0 MB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libxcb-dri2-0 amd64 1.17.0-2+b1 [107 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b2 [8848 B] Get: 166 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 24.2.8-1 [9185 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 24.2.8-1 [42.8 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.23.0-1+b1 [26.6 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libegl-mesa0 amd64 24.2.8-1 [133 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libevdev2 amd64 1.13.3+dfsg-1 [32.2 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b3 [20.2 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b3 [19.3 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.3.296.0-1 [126 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 24.2.8-1 [43.9 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 24.2.8-1 [154 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.4-1 [1501 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b2 [185 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libgudev-1.0-0 amd64 238-5+b1 [14.8 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.1.0-1 [478 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libwacom-common all 2.13.0-1 [98.0 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libwacom9 amd64 2.13.0-1 [24.0 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libinput-bin amd64 1.26.2-1 [25.3 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libmtdev1t64 amd64 1.1.6-1.2+b1 [22.5 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libinput10 amd64 1.26.2-1 [131 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libopenmm8.1 amd64 8.1.2+dfsg-1+b1 [1058 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libost-base2.9 amd64 2.9.0-2 [34.5 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libost-base-dev amd64 2.9.0-2 [28.6 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libost-geom2.9 amd64 2.9.0-2 [66.0 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libost-mol2.9 amd64 2.9.0-2 [394 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b1 [759 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.44-5 [260 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libqt5core5t64 amd64 5.15.15+dfsg-2 [1866 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libqt5xml5t64 amd64 5.15.15+dfsg-2 [126 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libost-info2.9 amd64 2.9.0-2 [168 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libost-seq2.9 amd64 2.9.0-2 [90.5 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libost-bindings2.9 amd64 2.9.0-2 [203 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libost-conop2.9 amd64 2.9.0-2 [189 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libost-conop-dev amd64 2.9.0-2 [23.0 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libost-db2.9 amd64 2.9.0-2 [45.2 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libost-geom-dev amd64 2.9.0-2 [29.6 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libost-img2.9 amd64 2.9.0-2 [144 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libost-img-alg2.9 amd64 2.9.0-2 [169 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libost-gfx2.9 amd64 2.9.0-2 [432 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libost-mol-alg2.9 amd64 2.9.0-2 [370 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libost-io2.9 amd64 2.9.0-2 [882 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libparasail8 amd64 2.6.2+dfsg-2 [1890 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libost-seq-alg2.9 amd64 2.9.0-2 [254 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-2 [217 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libqt5network5t64 amd64 5.15.15+dfsg-2 [682 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libxcb-util1 amd64 0.4.0-1+b2 [22.5 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b2 [22.2 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b3 [15.7 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b2 [17.4 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b1 [105 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2+b1 [130 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2+b1 [130 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.42-1 [790 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [16.2 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libqt5gui5t64 amd64 5.15.15+dfsg-2 [3498 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-2 [2400 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libost-gui2.9 amd64 2.9.0-2 [506 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libost-img-dev amd64 2.9.0-2 [44.2 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libost-info-dev amd64 2.9.0-2 [21.4 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libost-io-dev amd64 2.9.0-2 [53.1 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libost-mol-alg-dev amd64 2.9.0-2 [32.2 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libost-mol-dev amd64 2.9.0-2 [59.0 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libost-mol-mm2.9 amd64 2.9.0-2 [299 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libost-mol-mm-dev amd64 2.9.0-2 [29.3 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libost-seq-alg-dev amd64 2.9.0-2 [181 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libost-seq-dev amd64 2.9.0-2 [25.5 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libqt5designer5 amd64 5.15.15-4 [2759 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libqt5sql5t64 amd64 5.15.15+dfsg-2 [125 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libqt5help5 amd64 5.15.15-4 [151 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-2 [206 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 libqt5test5t64 amd64 5.15.15+dfsg-2 [151 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libsqlite3-dev amd64 3.46.1-1 [1107 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 python3.12-tk amd64 3.12.8-3 [113 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.1-2 [103 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.1-1 [9464 B] Get: 283 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 10.4.0-1+b1 [79.8 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-1 [264 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 288 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b6 [321 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-5 [95.1 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.0+dfsg-1 [25.5 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.14.1-3 [20.5 MB] Get: 296 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 python3-attr all 24.2.0-1 [68.4 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b3 [299 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.55.0-3 [1634 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-2+b1 [77.0 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.8.3-3+b1 [5654 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5.sip amd64 12.16.1-1 [66.0 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5 amd64 5.15.11+dfsg-1+b1 [2521 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 python3-ost amd64 2.9.0-2 [3986 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 openstructure amd64 2.9.0-2 [93.1 MB] Fetched 322 MB in 11s (28.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_amd64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:amd64 (3.12.8-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20285 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21348 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-3_amd64.deb ... Unpacking gettext-base (0.22.5-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-6_amd64.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-12_amd64.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_amd64.deb ... 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Setting up libdrm-common (2.4.123-1) ... Setting up libevdev2:amd64 (1.13.3+dfsg-1) ... Setting up readline-common (8.2-6) ... Setting up libicu-dev:amd64 (72.1-5+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libgudev-1.0-0:amd64 (238-5+b1) ... Setting up libost-geom2.9:amd64 (2.9.0-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libwacom-common (2.13.0-1) ... Setting up libxkbcommon0:amd64 (1.7.0-2) ... Setting up libwayland-client0:amd64 (1.23.0-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.5-1) ... Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-3) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b3) ... Setting up libtool (2.4.7-8) ... Setting up libwacom9:amd64 (2.13.0-1) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libavahi-common3:amd64 (0.8-15) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libboost-test1.83-dev:amd64 (1.83.0-4) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-4) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Setting up libinput-bin (1.26.2-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libboost-test-dev:amd64 (1.83.0.2+b2) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b3) ... Setting up libost-mol2.9 (2.9.0-2) ... Setting up shared-mime-info (2.4-5+b1) ... Setting up libxkbcommon-x11-0:amd64 (1.7.0-2) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libjs-sphinxdoc (8.1.3-2) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up groff-base (1.23.0-6) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:amd64 (10.1.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libost-geom-dev (2.9.0-2) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libavahi-client3:amd64 (0.8-15) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libost-conop2.9 (2.9.0-2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libinput10:amd64 (1.26.2-1) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b3) ... Setting up libcurl4t64:amd64 (8.11.1-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libdrm-intel1:amd64 (2.4.123-1) ... Setting up libost-mol-dev (2.9.0-2) ... Setting up python3.12-tk (3.12.8-3) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.1-2) ... Setting up libost-conop-dev (2.9.0-2) ... Setting up libqt5core5t64:amd64 (5.15.15+dfsg-2) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libqt5sql5t64:amd64 (5.15.15+dfsg-2) ... Setting up cmake (3.31.2-1) ... Setting up libcups2t64:amd64 (2.4.10-2) ... Setting up mesa-libgallium:amd64 (24.2.8-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up libgbm1:amd64 (24.2.8-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.8-3) ... Setting up libgl1-mesa-dri:amd64 (24.2.8-1) ... Setting up libqt5network5t64:amd64 (5.15.15+dfsg-2) ... Setting up libqt5xml5t64:amd64 (5.15.15+dfsg-2) ... Setting up debhelper (13.21) ... Setting up libqt5test5t64:amd64 (5.15.15+dfsg-2) ... Setting up libpython3.12t64:amd64 (3.12.8-3) ... Setting up libegl-mesa0:amd64 (24.2.8-1) ... Setting up libegl1:amd64 (1.7.0-1+b2) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up libost-info2.9 (2.9.0-2) ... Setting up libglx-mesa0:amd64 (24.2.8-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up libost-info-dev (2.9.0-2) ... Setting up libost-seq2.9 (2.9.0-2) ... Setting up libost-img2.9 (2.9.0-2) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:amd64 (3.12.8-3) ... Setting up libost-seq-dev (2.9.0-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up libost-img-alg2.9 (2.9.0-2) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3.12-dev (3.12.8-3) ... Setting up libost-seq-alg2.9 (2.9.0-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pyqt5.sip (12.16.1-1) ... Setting up libost-bindings2.9 (2.9.0-2) ... Setting up python3-lxml:amd64 (5.3.0-1+b1) ... Setting up libost-db2.9 (2.9.0-2) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up libost-img-dev (2.9.0-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up libost-mol-alg2.9 (2.9.0-2) ... Setting up libpython3-dev:amd64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b3) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tk:amd64 (3.13.1-1) ... Setting up libost-seq-alg-dev (2.9.0-2) ... Setting up libost-gfx2.9 (2.9.0-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-2) ... Setting up python3-pil.imagetk:amd64 (10.4.0-1+b1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up libboost-python1.83-dev (1.83.0-4) ... Setting up libost-mol-alg-dev (2.9.0-2) ... Setting up libost-io2.9 (2.9.0-2) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-2) ... Setting up libost-mol-mm2.9 (2.9.0-2) ... Setting up libost-mol-mm-dev (2.9.0-2) ... Setting up libqt5help5:amd64 (5.15.15-4) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up python3-fs (2.4.16-5) ... Setting up libost-gui2.9 (2.9.0-2) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up libost-io-dev (2.9.0-2) ... Setting up python3-contourpy (1.3.1-1) ... Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-2) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.14.1-3) ... Setting up libqt5designer5:amd64 (5.15.15-4) ... Setting up python3-pyqt5 (5.15.11+dfsg-1+b1) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up python3-ost (2.9.0-2) ... Setting up openstructure (2.9.0-2) ... Building compounds library, this may take a while... 0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZ Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2334390/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2334390/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/promod3-3.4.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../promod3_3.4.1+ds-1_source.changes dpkg-buildpackage: info: source package promod3 dpkg-buildpackage: info: source version 3.4.1+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds' dh_auto_configure -- \ -DOPTIMIZE=ON -DDISABLE_DOCUMENTATION=ON -DOST_ROOT=/usr -DCOMPOUND_LIB=/var/cache/openstructure/compounds.chemlib cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DOPTIMIZE=ON -DDISABLE_DOCUMENTATION=ON -DOST_ROOT=/usr -DCOMPOUND_LIB=/var/cache/openstructure/compounds.chemlib .. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Warning (dev) at CMakeLists.txt:58 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done CMake Warning (dev) at cmake_support/PROMOD3.cmake:980 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:997 (get_compiler_version) CMakeLists.txt:87 (setup_compiler_flags) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Python: /usr/bin/python3 (found suitable version "3.12.8", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed CMake Warning (dev) at cmake_support/PROMOD3.cmake:1029 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost package: python312 CMake Warning (dev) at cmake_support/PROMOD3.cmake:1043 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: unit_test_framework CMake Warning (dev) at cmake_support/PROMOD3.cmake:1050 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: filesystem system CMake Warning (dev) at cmake_support/PROMOD3.cmake:1054 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: iostreams CMake Warning (dev) at cmake_support/PROMOD3.cmake:1057 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: program_options CMake Warning (dev) at cmake_support/PROMOD3.cmake:1060 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.3.0") CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): config/src/CMakeLists.txt:8 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:593 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): core/init/CMakeLists.txt:9 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): loop/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) loop/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): loop/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): scoring/pymod/CMakeLists.txt:16 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) scoring/pymod/CMakeLists.txt:16 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): scoring/pymod/CMakeLists.txt:16 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) scoring/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) scoring/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) scoring/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): sidechain/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) sidechain/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): sidechain/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) sidechain/tests/CMakeLists.txt:11 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:464 (copy_if_different) scripts/CMakeLists.txt:12 (script) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): scripts/CMakeLists.txt:15 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) actions/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) actions/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) actions/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:1230 (copy_if_different) actions/CMakeLists.txt:6 (pm_action) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:1230 (copy_if_different) actions/CMakeLists.txt:7 (pm_action) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:1230 (copy_if_different) actions/CMakeLists.txt:8 (pm_action) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:1230 (copy_if_different) actions/CMakeLists.txt:9 (pm_action) This warning is for project developers. Use -Wno-dev to suppress it. -- ProMod3 will be built with the following options: OpenStructure (-DOST_ROOT) : /usr Compound library (-DCOMPOUND_LIB): /var/cache/openstructure/compounds.chemlib Optimized (-DOPTIMIZE) : ON Python : /usr/bin/python3 Eigen3 : /usr/include/eigen3 -- Configuring done (2.6s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds' dh_auto_build cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/promod3-3.4.1+ds -B/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/depend make -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/depend make -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/depend make -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/depend make -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/depend make -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/modelling_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color=" make -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/config/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/config/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/config/src/CMakeFiles/config_header.dir/DependInfo.cmake "--color=" make -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/depend make -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/depend cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/core_pymod.dir/DependInfo.cmake "--color=" make -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/loop_pymod.dir/DependInfo.cmake "--color=" make -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/sidechain_pymod.dir/DependInfo.cmake "--color=" make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend make -f extras/CMakeFiles/bash-completion.dir/build.make extras/CMakeFiles/bash-completion.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data_dir.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scripts /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_pm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data_dir.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/actions /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init___init__.py_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/extras /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/extras /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/extras/CMakeFiles/bash-completion.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data_dir.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/scoring_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/config/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/config/src/config.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/config.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/core/__init__.py make -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/pm-build-model /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-model make -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 make -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/loop/__init__.py make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/__init__.py make -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/sidechain/__init__.py make -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data make -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/build make -f extras/CMakeFiles/bash-completion.dir/build.make extras/CMakeFiles/bash-completion.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.1+ds/scripts/pm.in -DOUT_FILE=pm -DOST_ROOT="/usr" -DLIBDIR=lib64 -DLIBEXECPATH=libexec/promod3 -DPYTHON_MODULE_PATH=python3.12/site-packages/ -DOST_PYMOD_PATH=/usr/lib/python3/dist-packages -DPython_EXECUTABLE=/usr/bin/python3 -P /build/reproducible-path/promod3-3.4.1+ds/cmake_support/substitute.cmake make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/scoring/__init__.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/pymod/helper.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/core/helper.py [ 1%] Generating ../../stage/lib64/python3.12/site-packages/promod3/__init__.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_closegaps.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_closegaps.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/bin [ 1%] Generating ../stage/etc/bash_completion.d/pm-completion.bash make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.1+ds/core/init/__init__.py.in -DOUT_FILE=/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/promod3/__init__.py -DOST_COMPOUNDS_CHEMLIB_PATH="\"/var/cache/openstructure/compounds.chemlib\"" -DOST_ROOT=/usr -DPROMOD3_VERSION_STRING=3.4.1 -DGIT_BRANCH= -DGIT_COMMIT_HASH= -P /build/reproducible-path/promod3-3.4.1+ds/cmake_support/substitute.cmake cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/extras && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.1+ds/extras/pm-completion.bash.in -DOUT_FILE=/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/etc/bash_completion.d/pm-completion.bash -DPM3_ACTION_NAMES=build-model\ build-rawmodel\ help\ build-sidechains -P /build/reproducible-path/promod3-3.4.1+ds/cmake_support/substitute.cmake make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/pm-build-rawmodel /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-rawmodel make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3 [ 1%] Built target scoring_data_dir cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/pymod/pm3argparse.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/core/pm3argparse.py [ 1%] Built target loop_data_dir cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_molprobity.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_molprobity.py [ 1%] Built target sidechain_data_dir [ 1%] Built target sidechain_pymod make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 1%] Built target config_header [ 1%] Built target subst_pm [ 1%] Built target loop_pymod make -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/depend cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/pm-help /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-help make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scripts /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/promod3_scripts.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests [ 1%] Built target init___init__.py_pymod [ 1%] Built target bash-completion [ 1%] Built target scoring_pymod make -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_pipeline.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_pipeline.py make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/pm-build-sidechains /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-sidechains make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different pm /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/bin/pm make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 1%] Built target core_pymod make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_ring_punches.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_ring_punches.py make -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'core/init/CMakeFiles/init_pymod.dir/build'. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 1%] Built target create_stage make -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/depend make -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/depend make -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/depend make -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/depend make -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src/CMakeFiles/promod3_scoring_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts/pm /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/bin/pm [ 1%] Built target actions [ 1%] Built target init_pymod cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_denovo.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_denovo.py make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/build make -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./check_io.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./check_io.hh make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./bb_dep_rotamer_lib.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./bb_dep_rotamer_lib.hh make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./all_atom_env.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_env.hh make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./extension_scheme.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./extension_scheme.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./backbone_score_base.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_score_base.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_fragger_handle.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_fragger_handle.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./cluster.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./cluster.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./disulfid.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./disulfid.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./all_atom_positions.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_positions.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./gap.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./backbone_overall_scorer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_overall_scorer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_reconstruct_sidechains.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_reconstruct_sidechains.py [ 1%] Built target promod3_scripts cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./frame.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./frame.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./amino_acid_atoms.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./amino_acid_atoms.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./dynamic_spatial_organizer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./dynamic_spatial_organizer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./gap_extender.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap_extender.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./scoring_object_loader.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scoring_object_loader.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_monte_carlo.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_monte_carlo.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_graph.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_graph.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./export_helper.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./export_helper.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./backbone.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./backbone.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./model.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./model.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./cbeta_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_mhandle_helper.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_mhandle_helper.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./bb_trace_param.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./bb_trace_param.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./particle.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./geom_base.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_base.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./all_atom_relaxer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./all_atom_relaxer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_alignment_fiddling.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_alignment_fiddling.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./cb_packing_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cb_packing_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./particle_scoring_base.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring_base.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./data_bag.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./data_bag.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./geom_stems.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_stems.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./backbone_relaxer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./backbone_relaxer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./cbeta_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_raw_model.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_raw_model.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./particle_scoring.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./message.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./message.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./ccd.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./ccd.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./dense_hash_table.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_hash_table.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./reduced_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_planar_rings.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_planar_rings.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./scwrl4_particle_scoring.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./reduced_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./kic.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./kic.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./portable_binary_data_sink.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_sink.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_afdb_modelling.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_afdb_modelling.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./scwrl3_particle_scoring.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./portable_binary_data_source.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_source.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./loop_candidate.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./loop_candidate.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./clash_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_env_listener.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./vina_particle_scoring.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./density_creator.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./density_creator.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./clash_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./portable_binary_serializer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_serializer.hh [ 1%] Built target modelling_pymod cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo_closer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_closer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./forcefield_lookup.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./forcefield_lookup.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./runtime_profiling.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./runtime_profiling.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./density_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./density_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_cruncher.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_cruncher.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./frag_db.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./frag_db.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./hbond_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo_cooler.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_cooler.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./superpose.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./superpose.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_density.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_density.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./hbond_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo_sampler.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_sampler.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./enumerator.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./enumerator.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./fragger.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./fragger.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./graph.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./ss_agreement_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_group.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_group.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo_scorer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_scorer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./hydrogen_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./tree.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tree.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./ss_agreement_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./rigid_blocks.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./rigid_blocks.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_id.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_id.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./hydrogen_rule_lookup.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_rule_lookup.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./tetrahedral_polytope.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tetrahedral_polytope.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./torsion_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./torsion_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./score_container.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./score_container.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_lib.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./idx_handler.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./idx_handler.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./graph_minimizer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph_minimizer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./pairwise_scoring_function.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_scoring_function.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./scoring_weights.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./scoring_weights.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_lib_entry.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_entry.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./loop_object_loader.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./loop_object_loader.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./pairwise_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_lib_reader.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_reader.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./mm_system_creator.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./mm_system_creator.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./sidechain_reconstructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_reconstructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./eigen_types.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./eigen_types.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./constraint_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./constraint_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./sidechain_connector.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_connector.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./psipred_prediction.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./psipred_prediction.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./sidechain_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_env_listener.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./sidechain_object_loader.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_object_loader.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_score_base.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_score_base.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./stem_geom.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./stem_geom.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./motif_finder.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./motif_finder.hh [ 1%] Built target promod3_core_headers make -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./structure_db.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_overall_scorer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_overall_scorer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./robin_hood.h /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./robin_hood.h make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_lookup.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lookup.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_interaction_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./afdb.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./afdb.hh [ 1%] Building CXX object core/src/CMakeFiles/promod3_core.dir/geom_base.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./torsion_sampler.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./torsion_sampler.hh [ 1%] Building CXX object core/src/CMakeFiles/promod3_core.dir/superpose.cc.o [ 1%] Building CXX object core/src/CMakeFiles/promod3_core.dir/cluster.cc.o [ 2%] Building CXX object core/src/CMakeFiles/promod3_core.dir/graph.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/geom_base.cc.o -MF CMakeFiles/promod3_core.dir/geom_base.cc.o.d -o CMakeFiles/promod3_core.dir/geom_base.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/src/geom_base.cc [ 4%] Building CXX object core/src/CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/cluster.cc.o -MF CMakeFiles/promod3_core.dir/cluster.cc.o.d -o CMakeFiles/promod3_core.dir/cluster.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/src/cluster.cc [ 4%] Building CXX object core/src/CMakeFiles/promod3_core.dir/graph_minimizer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/superpose.cc.o -MF CMakeFiles/promod3_core.dir/superpose.cc.o.d -o CMakeFiles/promod3_core.dir/superpose.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/src/superpose.cc [ 4%] Building CXX object core/src/CMakeFiles/promod3_core.dir/tree.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/graph.cc.o -MF CMakeFiles/promod3_core.dir/graph.cc.o.d -o CMakeFiles/promod3_core.dir/graph.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/src/graph.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/graph_minimizer.cc.o -MF CMakeFiles/promod3_core.dir/graph_minimizer.cc.o.d -o CMakeFiles/promod3_core.dir/graph_minimizer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/src/graph_minimizer.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o -MF CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o.d -o CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/src/tetrahedral_polytope.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/tree.cc.o -MF CMakeFiles/promod3_core.dir/tree.cc.o.d -o CMakeFiles/promod3_core.dir/tree.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/src/tree.cc [ 5%] Building CXX object core/src/CMakeFiles/promod3_core.dir/geom_stems.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/geom_stems.cc.o -MF CMakeFiles/promod3_core.dir/geom_stems.cc.o.d -o CMakeFiles/promod3_core.dir/geom_stems.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/src/geom_stems.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./scwrl4_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_rotamer_constructor.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_interaction_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./ushort_vec.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./ushort_vec.hh [ 5%] Built target promod3_modelling_headers cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./scwrl3_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./sidechain_atom_rule_lookup.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_rule_lookup.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_packing_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_packing_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./vina_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_clash_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_clash_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./sidechain_atom_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./scwrl3_energy_functions.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scwrl3_energy_functions.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./structure_db_custom_types.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db_custom_types.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./subrotamer_optimizer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./subrotamer_optimizer.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 5%] Built target promod3_scoring_headers [ 5%] Built target promod3_loop_headers [ 5%] Built target promod3_sidechain_headers [ 5%] Linking CXX shared library ../../stage/lib64/libpromod3_core.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_core.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_core.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_core.so.3.4 -o ../../stage/lib64/libpromod3_core.so.3.4.1 CMakeFiles/promod3_core.dir/cluster.cc.o CMakeFiles/promod3_core.dir/geom_base.cc.o CMakeFiles/promod3_core.dir/geom_stems.cc.o CMakeFiles/promod3_core.dir/superpose.cc.o CMakeFiles/promod3_core.dir/graph.cc.o CMakeFiles/promod3_core.dir/tree.cc.o CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o CMakeFiles/promod3_core.dir/graph_minimizer.cc.o -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_core.so.3.4.1 ../../stage/lib64/libpromod3_core.so.3.4 ../../stage/lib64/libpromod3_core.so make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 5%] Built target promod3_core make -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/_core.dir/DependInfo.cmake "--color=" make -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 5%] Building CXX object core/pymod/CMakeFiles/_core.dir/export_geom.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/pymod/CMakeFiles/_core.dir/export_geom.cc.o -MF CMakeFiles/_core.dir/export_geom.cc.o.d -o CMakeFiles/_core.dir/export_geom.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/pymod/export_geom.cc [ 5%] Building CXX object core/pymod/CMakeFiles/_core.dir/export_runtime_profiling.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection 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-ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/all_atom_env.cc.o -MF CMakeFiles/promod3_loop.dir/all_atom_env.cc.o.d -o CMakeFiles/promod3_loop.dir/all_atom_env.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/all_atom_env.cc [ 7%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o [ 8%] Building CXX object core/pymod/CMakeFiles/_core.dir/export_graph_minimizer.cc.o [ 8%] Building CXX object core/pymod/CMakeFiles/_core.dir/wrap_core.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o -MF CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o.d -o CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/all_atom_positions.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_core_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/pymod/CMakeFiles/_core.dir/export_graph_minimizer.cc.o -MF CMakeFiles/_core.dir/export_graph_minimizer.cc.o.d -o CMakeFiles/_core.dir/export_graph_minimizer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/pymod/export_graph_minimizer.cc [ 9%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/amino_acid_atoms.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 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-DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o -MF CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o.d -o CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/bb_trace_param.cc [ 11%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/density_creator.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 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/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o -MF CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o.d -o CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/forcefield_lookup.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/frag_db.cc.o -MF CMakeFiles/promod3_loop.dir/frag_db.cc.o.d -o CMakeFiles/promod3_loop.dir/frag_db.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/frag_db.cc [ 12%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o -MF CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o.d -o CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o -c 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loop/src/CMakeFiles/promod3_loop.dir/fragger.cc.o -MF CMakeFiles/promod3_loop.dir/fragger.cc.o.d -o CMakeFiles/promod3_loop.dir/fragger.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/fragger.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o -MF CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o.d -o CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/hydrogen_rule_lookup.cc [ 14%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/idx_handler.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/idx_handler.cc.o -MF CMakeFiles/promod3_loop.dir/idx_handler.cc.o.d -o CMakeFiles/promod3_loop.dir/idx_handler.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/idx_handler.cc [ 15%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o -MF CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o.d -o CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/loop_object_loader.cc [ 15%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o -MF CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o.d -o CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/psipred_prediction.cc [ 15%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o -MF CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o.d -o CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/mm_system_creator.cc [ 16%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/structure_db.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/structure_db.cc.o -MF CMakeFiles/promod3_loop.dir/structure_db.cc.o.d -o CMakeFiles/promod3_loop.dir/structure_db.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/structure_db.cc [ 16%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o -MF CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o.d -o CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/torsion_sampler.cc [ 18%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o -MF CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o.d -o CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/sidechain_atom_rule_lookup.cc [ 18%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o -MF CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o.d -o CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/src/sidechain_atom_constructor.cc In file included from /usr/include/c++/14/string:54, from /usr/include/boost/assert/source_location.hpp:15, from /usr/include/boost/exception/exception.hpp:9, from /usr/include/boost/throw_exception.hpp:21, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:31, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/structure_db.hh:22, from /build/reproducible-path/promod3-3.4.1+ds/loop/src/structure_db.cc:17: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38, inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.1+ds/loop/src/structure_db.cc:331:25: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /usr/include/ost/generic_property.hh:34, from /usr/include/ost/mol/entity_base.hh:25, from /usr/include/ost/mol/entity_view.hh:27, from /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/structure_db.hh:29: /usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/string:42: In static member function 'static void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38, inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.1+ds/loop/src/structure_db.cc:331:25: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38, inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.1+ds/loop/src/structure_db.cc:331:25: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38, inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.1+ds/loop/src/structure_db.cc:331:25: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ [ 19%] Linking CXX shared module ../../stage/lib64/python3.12/site-packages/promod3/core/_core.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_core.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_core.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.12/site-packages/promod3/core/_core.so CMakeFiles/_core.dir/export_geom.cc.o CMakeFiles/_core.dir/export_runtime_profiling.cc.o CMakeFiles/_core.dir/export_graph_minimizer.cc.o CMakeFiles/_core.dir/wrap_core.cc.o -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 19%] Built target _core [ 19%] Linking CXX shared library ../../stage/lib64/libpromod3_loop.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_loop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_loop.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_loop.so.3.4 -o ../../stage/lib64/libpromod3_loop.so.3.4.1 CMakeFiles/promod3_loop.dir/all_atom_env.cc.o CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o CMakeFiles/promod3_loop.dir/amino_acid_atoms.cc.o CMakeFiles/promod3_loop.dir/backbone.cc.o CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o CMakeFiles/promod3_loop.dir/density_creator.cc.o CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o CMakeFiles/promod3_loop.dir/frag_db.cc.o CMakeFiles/promod3_loop.dir/fragger.cc.o CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o CMakeFiles/promod3_loop.dir/idx_handler.cc.o CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o CMakeFiles/promod3_loop.dir/structure_db.cc.o CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_loop.so.3.4.1 ../../stage/lib64/libpromod3_loop.so.3.4 ../../stage/lib64/libpromod3_loop.so make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 19%] Built target promod3_loop make -f loop/pymod/CMakeFiles/_loop.dir/build.make loop/pymod/CMakeFiles/_loop.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/_loop.dir/DependInfo.cmake "--color=" make -f 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'/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/src/CMakeFiles/promod3_sidechain.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 19%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_all_atom_env.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_all_atom_env.cc.o -MF CMakeFiles/_loop.dir/export_all_atom_env.cc.o.d -o CMakeFiles/_loop.dir/export_all_atom_env.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_all_atom_env.cc [ 21%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o [ 19%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_all_atom_positions.cc.o [ 22%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/backbone_overall_scorer.cc.o [ 22%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o [ 22%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o [ 22%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_backbone.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o -MF CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o.d -o CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/backbone_score_base.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_all_atom_positions.cc.o -MF CMakeFiles/_loop.dir/export_all_atom_positions.cc.o.d -o CMakeFiles/_loop.dir/export_all_atom_positions.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_all_atom_positions.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o -MF CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o.d -o CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/bb_dep_rotamer_lib.cc [ 23%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o -MF 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loop/pymod/CMakeFiles/_loop.dir/export_backbone.cc.o -MF CMakeFiles/_loop.dir/export_backbone.cc.o.d -o CMakeFiles/_loop.dir/export_backbone.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_backbone.cc [ 25%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/disulfid.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 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-ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o -MF CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o.d -o CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/scoring_object_loader.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/frame.cc.o -MF CMakeFiles/promod3_sidechain.dir/frame.cc.o.d -o CMakeFiles/promod3_sidechain.dir/frame.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/frame.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/cbeta_env_listener.cc [ 25%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_frag_db.cc.o [ 25%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o [ 26%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/particle_scoring.cc [ 26%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_frag_db.cc.o -MF CMakeFiles/_loop.dir/export_frag_db.cc.o.d -o CMakeFiles/_loop.dir/export_frag_db.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_frag_db.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o -MF CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/cb_packing_score.cc [ 28%] 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CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/scwrl4_particle_scoring.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o -MF CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o.d -o CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_forcefield_lookup.cc [ 29%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_loop_object_loader.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_loop_object_loader.cc.o -MF CMakeFiles/_loop.dir/export_loop_object_loader.cc.o.d -o CMakeFiles/_loop.dir/export_loop_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_loop_object_loader.cc [ 29%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_fragger.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_fragger.cc.o -MF CMakeFiles/_loop.dir/export_fragger.cc.o.d -o CMakeFiles/_loop.dir/export_fragger.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_fragger.cc [ 30%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o -MF CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/cbeta_score.cc [ 30%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/reduced_env_listener.cc [ 30%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/scwrl3_particle_scoring.cc [ 32%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/vina_particle_scoring.cc [ 32%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer.cc [ 33%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer_cruncher.cc [ 33%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer_density.cc [ 33%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer_group.cc [ 35%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/reduced_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/reduced_score.cc.o -MF CMakeFiles/promod3_scoring.dir/reduced_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/reduced_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/reduced_score.cc [ 35%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/clash_env_listener.cc [ 35%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_mm_system_creator.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_mm_system_creator.cc.o -MF CMakeFiles/_loop.dir/export_mm_system_creator.cc.o.d -o CMakeFiles/_loop.dir/export_mm_system_creator.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_mm_system_creator.cc [ 35%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/clash_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/clash_score.cc.o -MF CMakeFiles/promod3_scoring.dir/clash_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/clash_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/clash_score.cc [ 36%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer_id.cc [ 38%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/density_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/density_score.cc.o -MF CMakeFiles/promod3_scoring.dir/density_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/density_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/density_score.cc [ 38%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/hbond_env_listener.cc [ 38%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer_lib.cc [ 39%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/hbond_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/hbond_score.cc.o -MF CMakeFiles/promod3_scoring.dir/hbond_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/hbond_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/hbond_score.cc [ 40%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer_lib_entry.cc [ 42%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_psipred_prediction.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_psipred_prediction.cc.o -MF CMakeFiles/_loop.dir/export_psipred_prediction.cc.o.d -o CMakeFiles/_loop.dir/export_psipred_prediction.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_psipred_prediction.cc [ 42%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer_lib_reader.cc [ 43%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o -MF CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o.d -o CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/sidechain_connector.cc [ 43%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o -MF CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/ss_agreement_score.cc [ 43%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_structure_db.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_structure_db.cc.o -MF CMakeFiles/_loop.dir/export_structure_db.cc.o.d -o CMakeFiles/_loop.dir/export_structure_db.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_structure_db.cc [ 43%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/ss_agreement_env_listener.cc [ 43%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_torsion_sampler.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_torsion_sampler.cc.o -MF CMakeFiles/_loop.dir/export_torsion_sampler.cc.o.d -o CMakeFiles/_loop.dir/export_torsion_sampler.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_torsion_sampler.cc [ 43%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o -MF CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o.d -o CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/sidechain_object_loader.cc [ 45%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/wrap_loop.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/wrap_loop.cc.o -MF CMakeFiles/_loop.dir/wrap_loop.cc.o.d -o CMakeFiles/_loop.dir/wrap_loop.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/wrap_loop.cc [ 45%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer_constructor.cc [ 46%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/torsion_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/torsion_score.cc.o -MF CMakeFiles/promod3_scoring.dir/torsion_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/torsion_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/torsion_score.cc [ 46%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o -MF CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/pairwise_score.cc [ 47%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o -MF CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o.d -o CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/constraint_constructor.cc [ 47%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/all_atom_overall_scorer.cc [ 49%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/rotamer_lookup.cc [ 49%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/scwrl4_rotamer_constructor.cc [ 50%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/scwrl3_rotamer_constructor.cc [ 50%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/all_atom_interaction_env_listener.cc [ 50%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/vina_rotamer_constructor.cc [ 50%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o -MF CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o.d -o CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/subrotamer_optimizer.cc [ 52%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/all_atom_interaction_score.cc [ 52%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/all_atom_packing_score.cc [ 53%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/src/all_atom_clash_score.cc In file included from /usr/include/boost/python/override.hpp:13, from /usr/include/boost/python/wrapper.hpp:8, from /usr/include/boost/python/object/value_holder.hpp:15, from /usr/include/boost/python/object/class_metadata.hpp:14, from /usr/include/boost/python/class.hpp:23, from /usr/include/boost/python.hpp:18, from /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_mm_system_creator.cc:17: In member function 'boost::python::converter::extract_rvalue::result_type boost::python::converter::extract_rvalue::operator()() const [with T = bool]', inlined from 'boost::python::extract::operator result_type() const [with T = bool]' at /usr/include/boost/python/extract.hpp:136:23, inlined from 'void promod3::core::ConvertListToVector(const boost::python::list&, std::vector&) [with T = bool]' at /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/export_helper.hh:66:16: /usr/include/boost/python/extract.hpp:185:11: warning: '*(bool*)((char*)& + offsetof(boost::python::extract,boost::python::extract::.boost::python::converter::extract_rvalue::m_data.boost::python::converter::rvalue_from_python_data::.boost::python::converter::rvalue_from_python_storage::storage))' may be used uninitialized [-Wmaybe-uninitialized] 185 | ); | ^ In file included from /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/export_mm_system_creator.cc:18: /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/export_helper.hh: In function 'void promod3::core::ConvertListToVector(const boost::python::list&, std::vector&) [with T = bool]': /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/export_helper.hh:66:32: note: '' declared here 66 | v.push_back(boost::python::extract(l[i])); | ^~~~~~~~~~~~~~~~ [ 53%] Linking CXX shared library ../../stage/lib64/libpromod3_scoring.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_scoring.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_scoring.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_scoring.so.3.4 -o ../../stage/lib64/libpromod3_scoring.so.3.4.1 CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o CMakeFiles/promod3_scoring.dir/backbone_overall_scorer.cc.o CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o CMakeFiles/promod3_scoring.dir/reduced_score.cc.o CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o CMakeFiles/promod3_scoring.dir/clash_score.cc.o CMakeFiles/promod3_scoring.dir/density_score.cc.o CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o CMakeFiles/promod3_scoring.dir/hbond_score.cc.o CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o CMakeFiles/promod3_scoring.dir/torsion_score.cc.o CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so ../../stage/lib64/libpromod3_loop.so.3.4.1 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_scoring.so.3.4.1 ../../stage/lib64/libpromod3_scoring.so.3.4 ../../stage/lib64/libpromod3_scoring.so make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 53%] Built target promod3_scoring make -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/_scoring.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 53%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_all_atom_score.cc.o [ 54%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_backbone_score.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_backbone_score.cc.o -MF CMakeFiles/_scoring.dir/export_backbone_score.cc.o.d -o CMakeFiles/_scoring.dir/export_backbone_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/export_backbone_score.cc [ 54%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_object_loader.cc.o [ 56%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_all_atom_score.cc.o -MF CMakeFiles/_scoring.dir/export_all_atom_score.cc.o.d -o CMakeFiles/_scoring.dir/export_all_atom_score.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/export_all_atom_score.cc [ 56%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_object_loader.cc.o -MF CMakeFiles/_scoring.dir/export_object_loader.cc.o.d -o CMakeFiles/_scoring.dir/export_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/export_object_loader.cc [ 57%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o -MF CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o.d -o CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/export_pairwise_functions.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o -MF CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o.d -o CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/export_constraint_constructor.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o -MF CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o.d -o CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/export_scwrl3_energy_functions.cc [ 59%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/wrap_scoring.cc.o [ 59%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_density_scorer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/wrap_scoring.cc.o -MF CMakeFiles/_scoring.dir/wrap_scoring.cc.o.d -o CMakeFiles/_scoring.dir/wrap_scoring.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/wrap_scoring.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_density_scorer.cc.o -MF CMakeFiles/_scoring.dir/export_density_scorer.cc.o.d -o CMakeFiles/_scoring.dir/export_density_scorer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/export_density_scorer.cc [ 59%] Linking CXX shared module ../../stage/lib64/python3.12/site-packages/promod3/loop/_loop.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_loop.dir/link.txt --verbose=1 [ 60%] Linking CXX shared library ../../stage/lib64/libpromod3_sidechain.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_sidechain.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_sidechain.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_sidechain.so.3.4 -o ../../stage/lib64/libpromod3_sidechain.so.3.4.1 CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o CMakeFiles/promod3_sidechain.dir/disulfid.cc.o CMakeFiles/promod3_sidechain.dir/frame.cc.o CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/rotamer.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so ../../stage/lib64/libpromod3_loop.so.3.4.1 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_sidechain.so.3.4.1 ../../stage/lib64/libpromod3_sidechain.so.3.4 ../../stage/lib64/libpromod3_sidechain.so make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 60%] Built target promod3_sidechain make -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/depend cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/_sidechain.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling.dir/DependInfo.cmake "--color=" /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_loop.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.12/site-packages/promod3/loop/_loop.so CMakeFiles/_loop.dir/export_all_atom_env.cc.o CMakeFiles/_loop.dir/export_all_atom_positions.cc.o CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o CMakeFiles/_loop.dir/export_backbone.cc.o CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o CMakeFiles/_loop.dir/export_frag_db.cc.o CMakeFiles/_loop.dir/export_fragger.cc.o CMakeFiles/_loop.dir/export_loop_object_loader.cc.o CMakeFiles/_loop.dir/export_mm_system_creator.cc.o CMakeFiles/_loop.dir/export_psipred_prediction.cc.o CMakeFiles/_loop.dir/export_structure_db.cc.o CMakeFiles/_loop.dir/export_torsion_sampler.cc.o CMakeFiles/_loop.dir/wrap_loop.cc.o -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_loop.so.3.4.1 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 60%] Built target _loop [ 61%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_disulfid.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_disulfid.cc.o -MF CMakeFiles/_sidechain.dir/export_disulfid.cc.o.d -o CMakeFiles/_sidechain.dir/export_disulfid.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_disulfid.cc [ 63%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o [ 61%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_connector.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK 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modelling/src/CMakeFiles/promod3_modelling.dir/gap.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o -MF CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o.d -o CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/extension_scheme.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_frame.cc.o -MF CMakeFiles/_sidechain.dir/export_frame.cc.o.d -o 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modelling/src/CMakeFiles/promod3_modelling.dir/gap.cc.o -MF CMakeFiles/promod3_modelling.dir/gap.cc.o.d -o CMakeFiles/promod3_modelling.dir/gap.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/gap.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_rotamer_graph.cc [ 66%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/model.cc.o [ 66%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_particle.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/gap_extender.cc.o -MF CMakeFiles/promod3_modelling.dir/gap_extender.cc.o.d -o CMakeFiles/promod3_modelling.dir/gap_extender.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/gap_extender.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_particle.cc.o -MF CMakeFiles/_sidechain.dir/export_particle.cc.o.d -o CMakeFiles/_sidechain.dir/export_particle.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_particle.cc [ 66%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o [ 66%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/model.cc.o -MF CMakeFiles/promod3_modelling.dir/model.cc.o.d -o CMakeFiles/promod3_modelling.dir/model.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/model.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_rotamer.cc [ 67%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o -MF CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o.d -o CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/all_atom_relaxer.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o -MF CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o.d -o CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/backbone_relaxer.cc [ 69%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_rotamer_cruncher.cc [ 69%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/ccd.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/ccd.cc.o -MF CMakeFiles/promod3_modelling.dir/ccd.cc.o.d -o CMakeFiles/promod3_modelling.dir/ccd.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/ccd.cc [ 70%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/kic.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/kic.cc.o -MF CMakeFiles/promod3_modelling.dir/kic.cc.o.d -o CMakeFiles/promod3_modelling.dir/kic.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/kic.cc [ 70%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o -MF CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o.d -o CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/loop_candidate.cc [ 70%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_rotamer_density.cc [ 70%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/monte_carlo.cc [ 71%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/monte_carlo_closer.cc [ 71%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/monte_carlo_cooler.cc [ 73%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_rotamer_ids.cc /build/reproducible-path/promod3-3.4.1+ds/modelling/src/model.cc: In function 'void promod3::modelling::MergeMHandle(const ModellingHandle&, ModellingHandle&, uint, uint, uint, uint, const geom::Mat4&)': /build/reproducible-path/promod3-3.4.1+ds/modelling/src/model.cc:402:17: warning: possibly dangling reference to a temporary [-Wdangling-reference] 402 | const String& seqres = source_mhandle.seqres[source_chain_idx].GetString(); | ^~~~~~ /build/reproducible-path/promod3-3.4.1+ds/modelling/src/model.cc:402:75: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(((int)source_chain_idx)).ost::seq::SequenceHandle::GetString()' 402 | const String& seqres = source_mhandle.seqres[source_chain_idx].GetString(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 74%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/monte_carlo_sampler.cc [ 74%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/monte_carlo_scorer.cc [ 74%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_rotamer_lib.cc [ 74%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o -MF CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o.d -o CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_sidechain_object_loader.cc [ 76%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_rotamer_constructor.cc [ 76%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o -MF CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o.d -o CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/export_subrotamer_optimizer.cc [ 77%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o -MF CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o.d -o CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/wrap_sidechain.cc [ 77%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o -MF CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o.d -o CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/rigid_blocks.cc [ 78%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/score_container.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/score_container.cc.o -MF CMakeFiles/promod3_modelling.dir/score_container.cc.o.d -o CMakeFiles/promod3_modelling.dir/score_container.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/score_container.cc [ 78%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o -MF CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o.d -o CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/scoring_weights.cc [ 80%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o -MF CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o.d -o CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/sidechain_reconstructor.cc [ 80%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o -MF CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o.d -o CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/sidechain_env_listener.cc [ 81%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/motif_finder.cc.o [ 81%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/afdb.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/motif_finder.cc.o -MF CMakeFiles/promod3_modelling.dir/motif_finder.cc.o.d -o CMakeFiles/promod3_modelling.dir/motif_finder.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/motif_finder.cc cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/afdb.cc.o -MF CMakeFiles/promod3_modelling.dir/afdb.cc.o.d -o CMakeFiles/promod3_modelling.dir/afdb.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/src/afdb.cc /build/reproducible-path/promod3-3.4.1+ds/modelling/src/afdb.cc: In function 'void promod3::modelling::CreatePentaMatch(const ost::seq::SequenceList&, const String&, bool)': /build/reproducible-path/promod3-3.4.1+ds/modelling/src/afdb.cc:220:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 220 | const String& sname = seq_list[i].GetName(); | ^~~~~ /build/reproducible-path/promod3-3.4.1+ds/modelling/src/afdb.cc:220:48: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(i).ost::seq::SequenceHandle::GetName()' 220 | const String& sname = seq_list[i].GetName(); | ~~~~~~~~~~~~~~~~~~~^~ [ 81%] Linking CXX shared module ../../stage/lib64/python3.12/site-packages/promod3/scoring/_scoring.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_scoring.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_scoring.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.12/site-packages/promod3/scoring/_scoring.so CMakeFiles/_scoring.dir/export_backbone_score.cc.o CMakeFiles/_scoring.dir/export_all_atom_score.cc.o CMakeFiles/_scoring.dir/export_object_loader.cc.o CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o CMakeFiles/_scoring.dir/export_density_scorer.cc.o CMakeFiles/_scoring.dir/wrap_scoring.cc.o -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_scoring.so.3.4.1 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../stage/lib64/libpromod3_loop.so.3.4.1 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 81%] Built target _scoring In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/eigen_types.hh:23, from /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/superpose.hh:24, from /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/backbone.hh:33, from /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/kic.hh:21, from /build/reproducible-path/promod3-3.4.1+ds/modelling/src/kic.cc:17: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 4 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Linking CXX shared module ../../stage/lib64/python3.12/site-packages/promod3/sidechain/_sidechain.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_sidechain.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_sidechain.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.12/site-packages/promod3/sidechain/_sidechain.so CMakeFiles/_sidechain.dir/export_connector.cc.o CMakeFiles/_sidechain.dir/export_disulfid.cc.o CMakeFiles/_sidechain.dir/export_frame.cc.o CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o CMakeFiles/_sidechain.dir/export_particle.cc.o CMakeFiles/_sidechain.dir/export_rotamer.cc.o CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_sidechain.so.3.4.1 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../stage/lib64/libpromod3_loop.so.3.4.1 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 81%] Built target _sidechain [ 81%] Linking CXX shared library ../../stage/lib64/libpromod3_modelling.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_modelling.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_modelling.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_modelling.so.3.4 -o ../../stage/lib64/libpromod3_modelling.so.3.4.1 CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o CMakeFiles/promod3_modelling.dir/gap.cc.o CMakeFiles/promod3_modelling.dir/gap_extender.cc.o CMakeFiles/promod3_modelling.dir/model.cc.o CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o CMakeFiles/promod3_modelling.dir/ccd.cc.o CMakeFiles/promod3_modelling.dir/kic.cc.o CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o CMakeFiles/promod3_modelling.dir/score_container.cc.o CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o CMakeFiles/promod3_modelling.dir/motif_finder.cc.o CMakeFiles/promod3_modelling.dir/afdb.cc.o -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so ../../stage/lib64/libpromod3_scoring.so.3.4.1 ../../stage/lib64/libpromod3_sidechain.so.3.4.1 ../../stage/lib64/libpromod3_loop.so.3.4.1 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_modelling.so.3.4.1 ../../stage/lib64/libpromod3_modelling.so.3.4 ../../stage/lib64/libpromod3_modelling.so make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 81%] Built target promod3_modelling make -f modelling/pymod/CMakeFiles/_modelling.dir/build.make modelling/pymod/CMakeFiles/_modelling.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu 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-I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_extension_scheme.cc.o -MF CMakeFiles/_modelling.dir/export_extension_scheme.cc.o.d -o CMakeFiles/_modelling.dir/export_extension_scheme.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/export_extension_scheme.cc [ 83%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_loop_closure.cc.o [ 84%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_model.cc.o [ 84%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_rigid_blocks.cc.o [ 84%] Building CXX object 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modelling/pymod/CMakeFiles/_modelling.dir/export_model.cc.o -MF CMakeFiles/_modelling.dir/export_model.cc.o.d -o CMakeFiles/_modelling.dir/export_model.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/export_model.cc [ 85%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_gap.cc.o [ 85%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_monte_carlo.cc.o [ 85%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_motif_finder.cc.o [ 85%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_loop_candidate.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_scoring_weights.cc.o -MF CMakeFiles/_modelling.dir/export_scoring_weights.cc.o.d -o CMakeFiles/_modelling.dir/export_scoring_weights.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/export_scoring_weights.cc [ 87%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_score_container.cc.o [ 88%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_sidechain_reconstructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ 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modelling/pymod/CMakeFiles/_modelling.dir/export_sidechain_reconstructor.cc.o -MF CMakeFiles/_modelling.dir/export_sidechain_reconstructor.cc.o.d -o CMakeFiles/_modelling.dir/export_sidechain_reconstructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/export_sidechain_reconstructor.cc [ 88%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_gap_extender.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_gap_extender.cc.o -MF CMakeFiles/_modelling.dir/export_gap_extender.cc.o.d -o CMakeFiles/_modelling.dir/export_gap_extender.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/export_gap_extender.cc [ 88%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_afdb.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_afdb.cc.o -MF CMakeFiles/_modelling.dir/export_afdb.cc.o.d -o CMakeFiles/_modelling.dir/export_afdb.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/export_afdb.cc [ 90%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/wrap_modelling.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/wrap_modelling.cc.o -MF CMakeFiles/_modelling.dir/wrap_modelling.cc.o.d -o CMakeFiles/_modelling.dir/wrap_modelling.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/wrap_modelling.cc [ 90%] Linking CXX shared module ../../stage/lib64/python3.12/site-packages/promod3/modelling/_modelling.so cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_modelling.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_modelling.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.12/site-packages/promod3/modelling/_modelling.so CMakeFiles/_modelling.dir/export_extension_scheme.cc.o CMakeFiles/_modelling.dir/export_gap.cc.o CMakeFiles/_modelling.dir/export_gap_extender.cc.o CMakeFiles/_modelling.dir/export_loop_candidate.cc.o CMakeFiles/_modelling.dir/export_loop_closure.cc.o CMakeFiles/_modelling.dir/export_model.cc.o CMakeFiles/_modelling.dir/export_monte_carlo.cc.o CMakeFiles/_modelling.dir/export_rigid_blocks.cc.o CMakeFiles/_modelling.dir/export_score_container.cc.o CMakeFiles/_modelling.dir/export_scoring_weights.cc.o CMakeFiles/_modelling.dir/export_sidechain_reconstructor.cc.o 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/usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 90%] Built target _modelling make -f core/init/CMakeFiles/_init.dir/build.make core/init/CMakeFiles/_init.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/_init.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/init/CMakeFiles/_init.dir/build.make core/init/CMakeFiles/_init.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'core/init/CMakeFiles/_init.dir/build'. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 90%] Built target _init make -f loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/depend make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/depend make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build.make 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'/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/DependInfo.cmake "--color=" make -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/DependInfo.cmake "--color=" make -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/DependInfo.cmake "--color=" make -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/depend make -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/DependInfo.cmake "--color=" make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build [ 90%] Generating ../../stage/share/promod3/loop_data/torsion_sampler.dat make -f scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/portable_torsion_sampler.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler.dat'\ TorsionSampler [ 90%] Generating ../../stage/share/promod3/loop_data/torsion_sampler_helical.dat make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 90%] Generating ../../stage/share/promod3/loop_data/torsion_sampler_coil.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/portable_torsion_sampler_helical.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler_helical.dat'\ TorsionSampler make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/portable_torsion_sampler_coil.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler_coil.dat'\ TorsionSampler make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 91%] Generating ../../stage/share/promod3/loop_data/structure_db.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/portable_structure_db.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/structure_db.dat'\ StructureDB make -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build [ 92%] Generating ../../stage/share/promod3/scoring_data/cb_packing_scorer.dat [ 92%] Generating ../../stage/share/promod3/loop_data/ff_lookup_charmm.dat make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 94%] Generating ../../stage/share/promod3/loop_data/torsion_sampler_extended.dat [ 94%] Generating ../../stage/share/promod3/loop_data/frag_db.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/portable_ff_lookup_charmm.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/ff_lookup_charmm.dat'\ ForcefieldLookup [ 95%] Generating ../../stage/share/promod3/scoring_data/cbeta_scorer.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/portable_cb_packing_scorer.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/cb_packing_scorer.dat'\ CBPackingScorer cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/portable_torsion_sampler_extended.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler_extended.dat'\ TorsionSampler [ 97%] Generating ../../stage/share/promod3/scoring_data/aa_packing_scorer.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/portable_cbeta_scorer.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/cbeta_scorer.dat'\ CBetaScorer cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/loop/data/portable_frag_db.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/frag_db.dat'\ FragDB make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/portable_aa_packing_scorer.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/aa_packing_scorer.dat'\ AllAtomPackingScorer [ 98%] Generating ../../stage/share/promod3/scoring_data/reduced_scorer.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/portable_reduced_scorer.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/reduced_scorer.dat'\ ReducedScorer make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build Compound library not available. Some functionality may not work as expected. make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build Compound library not available. Some functionality may not work as expected. make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/depend [ 98%] Generating ../../stage/share/promod3/scoring_data/hbond_scorer.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/portable_hbond_scorer.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/hbond_scorer.dat'\ HBondScorer [ 98%] Generating ../../stage/share/promod3/scoring_data/ss_agreement_scorer.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/portable_ss_agreement_scorer.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/ss_agreement_scorer.dat'\ SSAgreementScorer make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/DependInfo.cmake "--color=" Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. [ 98%] Generating ../../stage/share/promod3/scoring_data/torsion_scorer.dat Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. [ 98%] Generating ../../stage/share/promod3/scoring_data/aa_scorer.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/portable_torsion_scorer.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/torsion_scorer.dat'\ TorsionScorer Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.1+ds/scoring/data/portable_aa_scorer.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/aa_scorer.dat'\ AllAtomInteractionScorer [100%] Generating ../../stage/share/promod3/sidechain_data/bb_dep_lib.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/sidechain/data/convert_lib.py'\ '/build/reproducible-path/promod3-3.4.1+ds/sidechain/data/portable_bb_dep_lib.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data/bb_dep_lib.dat'\ BBDepRotamerLib Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build Compound library not available. Some functionality may not work as expected. make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. [100%] Generating ../../stage/share/promod3/sidechain_data/lib.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.1+ds/sidechain/data/convert_lib.py'\ '/build/reproducible-path/promod3-3.4.1+ds/sidechain/data/portable_lib.dat'\ '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data/lib.dat'\ RotamerLib Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" Compound library not available. Some functionality may not work as expected. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_scoring_data_cbeta_scorer.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_scoring_data_ss_agreement_scorer.dat [100%] Built target generate_scoring_data_torsion_scorer.dat [100%] Built target generate_scoring_data_reduced_scorer.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_torsion_sampler.dat [100%] Built target generate_scoring_data_cb_packing_scorer.dat [100%] Built target generate_scoring_data_aa_packing_scorer.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_sidechain_data_lib.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_scoring_data_hbond_scorer.dat [100%] Built target generate_loop_data_ff_lookup_charmm.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_torsion_sampler_coil.dat [100%] Built target generate_scoring_data_aa_scorer.dat make -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_torsion_sampler_extended.dat make -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/build [100%] Built target generate_loop_data_torsion_sampler_helical.dat make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'scoring/data/CMakeFiles/scoring_data.dir/build'. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target scoring_data make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_sidechain_data_bb_dep_lib.dat make -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'sidechain/data/CMakeFiles/sidechain_data.dir/build'. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target sidechain_data make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_frag_db.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_structure_db.dat make -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'loop/data/CMakeFiles/loop_data.dir/build'. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target loop_data make[2]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds' dh_auto_test --no-parallel cd obj-x86_64-linux-gnu && make -j1 check ARGS\+=--verbose ARGS\+=-j1 make[2]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/promod3-3.4.1+ds -B/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[3]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/promod3-3.4.1+ds -B/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/CMakeFiles 94 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[4]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/actions /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/pm-build-model /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-model cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/pm-build-rawmodel /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-rawmodel cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/pm-help /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-help cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/pm-build-sidechains /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-sidechains make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 0%] Built target actions make -f actions/tests/CMakeFiles/test_data_actions.dir/build.make actions/tests/CMakeFiles/test_data_actions.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_data_actions.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_data_actions.dir/build.make actions/tests/CMakeFiles/test_data_actions.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/tests/data/gly.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions/data/gly.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/tests/data/seq.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions/data/seq.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/actions/tests/data/seq_ins.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions/data/seq_ins.fasta make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 0%] Built target test_data_actions make -f actions/tests/CMakeFiles/test_actions.py_run.dir/build.make actions/tests/CMakeFiles/test_actions.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_actions.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_actions.py_run.dir/build.make actions/tests/CMakeFiles/test_actions.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 1%] running checks test_actions.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/actions/tests/test_actions.py" Compound library not available. Some functionality may not work as expected. . ---------------------------------------------------------------------- Ran 1 test in 0.001s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 1%] Built target test_actions.py_run make -f core/tests/CMakeFiles/test_data_core.dir/build.make core/tests/CMakeFiles/test_data_core.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_data_core.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_data_core.dir/build.make core/tests/CMakeFiles/test_data_core.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests//test_helper.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core//test_helper.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/broken_on_purpose.chemlib /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/broken_on_purpose.chemlib cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/1crn.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/1crn_cut.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn_cut.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/2aoh-1_cut.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2aoh-1_cut.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/2aoh-1_cut_A.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2aoh-1_cut_A.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/2aoh-1_cut_B.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2aoh-1_cut_B.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/2jlp-1.aln /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.aln cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/2jlp-1.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/2jlp-1.json /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.json cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/2jlp-1.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/5d52-1_cut.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5d52-1_cut.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/5d52-1_cut_A.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5d52-1_cut_A.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/5d52-1_cut_B.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5d52-1_cut_B.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/1crn.hhm /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn.hhm cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/1crn_corrupted.hhm /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn_corrupted.hhm cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/5ua4_B.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5ua4_B.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/aln_tpl/5ua4_B.hhm /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5ua4_B.hhm cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/fasta/alignment.fas /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/alignment.fas cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/fasta/1ake.fas /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake.fas cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/fasta/1ake_1.fas /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_1.fas cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/fasta/1ake_2trg.fas /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_2trg.fas cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/fasta/1ake_3.fas /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_3.fas cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/fasta/1ake.fas.gz /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake.fas.gz cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/fasta/1ake_nel.fas /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_nel.fas cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/tests/data/fasta/1ake_sw.fas /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_sw.fas make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 1%] Built target test_data_core make -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/bin cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/libexec/promod3 cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 1%] Built target create_stage make -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./check_io.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./check_io.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./cluster.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./cluster.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./dynamic_spatial_organizer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./dynamic_spatial_organizer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./export_helper.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./export_helper.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./geom_base.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_base.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./geom_stems.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_stems.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./message.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./message.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./portable_binary_data_sink.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_sink.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./portable_binary_data_source.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_source.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./portable_binary_serializer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_serializer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./runtime_profiling.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./runtime_profiling.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./superpose.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./superpose.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./enumerator.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./enumerator.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./graph.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./tree.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tree.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./tetrahedral_polytope.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tetrahedral_polytope.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./graph_minimizer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph_minimizer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/src/./eigen_types.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./eigen_types.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 1%] Built target promod3_core_headers make -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/config/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/config/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/config/src/CMakeFiles/config_header.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/config/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/config/src/config.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/config.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 1%] Built target config_header make -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/src 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/build/reproducible-path/promod3-3.4.1+ds/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_suite_core.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_suite_core.dir/build.make core/tests/CMakeFiles/test_suite_core.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 4%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/test_check_io.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/test_check_io.cc.o -MF CMakeFiles/test_suite_core.dir/test_check_io.cc.o.d -o CMakeFiles/test_suite_core.dir/test_check_io.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/tests/test_check_io.cc [ 5%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o -MF CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o.d -o CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/tests/test_portable_binary.cc [ 5%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o -MF CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o.d -o CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/tests/test_graph_minimizer.cc [ 6%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/tests.cc.o -MF CMakeFiles/test_suite_core.dir/tests.cc.o.d -o CMakeFiles/test_suite_core.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/core/tests/tests.cc [ 6%] Linking CXX executable ../../tests/core/test_suite_core cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_core.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_core.dir/link.d CMakeFiles/test_suite_core.dir/test_check_io.cc.o CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o CMakeFiles/test_suite_core.dir/tests.cc.o -o ../../tests/core/test_suite_core -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 6%] Built target test_suite_core make -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/core_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/core/__init__.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/pymod/helper.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/core/helper.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/core/pymod/pm3argparse.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/core/pm3argparse.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 6%] Built target core_pymod make -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/_core.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'core/pymod/CMakeFiles/_core.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 8%] Built target _core make -f core/tests/CMakeFiles/test_suite_core_run.dir/build.make core/tests/CMakeFiles/test_suite_core_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_suite_core_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_suite_core_run.dir/build.make core/tests/CMakeFiles/test_suite_core_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 9%] running checks for module core cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core/test_suite_core Running 4 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 9%] Built target test_suite_core_run make -f core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/build.make core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/build.make core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 10%] running checks test_setcompoundschemlib.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/core/tests/test_setcompoundschemlib.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 0.206s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 10%] Built target test_setcompoundschemlib.py_run make -f core/tests/CMakeFiles/test_helper.py_run.dir/build.make core/tests/CMakeFiles/test_helper.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_helper.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_helper.py_run.dir/build.make core/tests/CMakeFiles/test_helper.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 11%] running checks test_helper.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/core/tests/test_helper.py" Compound library not available. Some functionality may not work as expected. ............ ---------------------------------------------------------------------- Ran 12 tests in 0.004s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 11%] Built target test_helper.py_run make -f core/tests/CMakeFiles/test_pm3argparse.py_run.dir/build.make core/tests/CMakeFiles/test_pm3argparse.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_pm3argparse.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_pm3argparse.py_run.dir/build.make core/tests/CMakeFiles/test_pm3argparse.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 11%] running checks test_pm3argparse.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/core && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/core/tests/test_pm3argparse.py" Compound library not available. Some functionality may not work as expected. .................................................................. ---------------------------------------------------------------------- Ran 66 tests in 3.925s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 11%] Built target test_pm3argparse.py_run make -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data_dir.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 11%] Built target loop_data_dir make -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/modelling_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/__init__.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_closegaps.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_closegaps.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_molprobity.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_molprobity.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_pipeline.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_pipeline.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_ring_punches.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_ring_punches.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_denovo.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_denovo.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_fragger_handle.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_fragger_handle.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_reconstruct_sidechains.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_reconstruct_sidechains.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_monte_carlo.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_monte_carlo.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_mhandle_helper.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_mhandle_helper.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_alignment_fiddling.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_alignment_fiddling.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_raw_model.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_raw_model.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_planar_rings.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_planar_rings.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod/_afdb_modelling.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/modelling/_afdb_modelling.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 11%] Built target modelling_pymod make -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./all_atom_env.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_env.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./all_atom_positions.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_positions.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./amino_acid_atoms.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./amino_acid_atoms.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./backbone.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./backbone.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./bb_trace_param.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./bb_trace_param.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./data_bag.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./data_bag.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./dense_hash_table.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_hash_table.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./density_creator.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./density_creator.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./forcefield_lookup.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./forcefield_lookup.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./frag_db.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./frag_db.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./fragger.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./fragger.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./hydrogen_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./hydrogen_rule_lookup.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_rule_lookup.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./idx_handler.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./idx_handler.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./loop_object_loader.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./loop_object_loader.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./mm_system_creator.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./mm_system_creator.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./psipred_prediction.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./psipred_prediction.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./stem_geom.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./stem_geom.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./structure_db.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./torsion_sampler.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./torsion_sampler.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./ushort_vec.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./ushort_vec.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./sidechain_atom_rule_lookup.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_rule_lookup.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./sidechain_atom_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/src/./structure_db_custom_types.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db_custom_types.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 11%] Built target promod3_loop_headers make -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/src/CMakeFiles/promod3_loop.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 20%] Built target promod3_loop make -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/loop_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/loop/__init__.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 20%] Built target loop_pymod make -f loop/pymod/CMakeFiles/_loop.dir/build.make loop/pymod/CMakeFiles/_loop.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/_loop.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/pymod/CMakeFiles/_loop.dir/build.make loop/pymod/CMakeFiles/_loop.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/pymod/CMakeFiles/_loop.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 25%] Built target _loop make -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src/CMakeFiles/promod3_scoring_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./backbone_score_base.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_score_base.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./backbone_overall_scorer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_overall_scorer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./scoring_object_loader.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scoring_object_loader.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./cbeta_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./cb_packing_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cb_packing_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./cbeta_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./reduced_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./reduced_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./clash_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./clash_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./density_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./density_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./hbond_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./hbond_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./ss_agreement_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./ss_agreement_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./torsion_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./torsion_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./pairwise_scoring_function.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_scoring_function.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./pairwise_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./constraint_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./constraint_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_score_base.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_score_base.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_overall_scorer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_overall_scorer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_interaction_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_interaction_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_packing_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_packing_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./all_atom_clash_score.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_clash_score.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/src/./scwrl3_energy_functions.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scwrl3_energy_functions.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 25%] Built target promod3_scoring_headers make -f scoring/src/CMakeFiles/promod3_scoring.dir/build.make scoring/src/CMakeFiles/promod3_scoring.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/src/CMakeFiles/promod3_scoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/src/CMakeFiles/promod3_scoring.dir/build.make scoring/src/CMakeFiles/promod3_scoring.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/src/CMakeFiles/promod3_scoring.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 36%] Built target promod3_scoring make -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/scoring_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/scoring/__init__.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 36%] Built target scoring_pymod make -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/_scoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/pymod/CMakeFiles/_scoring.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 40%] Built target _scoring make -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./bb_dep_rotamer_lib.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./bb_dep_rotamer_lib.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./disulfid.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./disulfid.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./frame.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./frame.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_graph.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_graph.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./particle.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./particle_scoring_base.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring_base.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./particle_scoring.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./scwrl4_particle_scoring.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./scwrl3_particle_scoring.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./vina_particle_scoring.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_cruncher.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_cruncher.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_density.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_density.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_group.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_group.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_id.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_id.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_lib.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_lib_entry.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_entry.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_lib_reader.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_reader.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./sidechain_connector.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_connector.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./sidechain_object_loader.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_object_loader.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./rotamer_lookup.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lookup.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./scwrl4_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./scwrl3_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./vina_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/src/./subrotamer_optimizer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./subrotamer_optimizer.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 40%] Built target promod3_sidechain_headers make -f sidechain/src/CMakeFiles/promod3_sidechain.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/src/CMakeFiles/promod3_sidechain.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/src/CMakeFiles/promod3_sidechain.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/src/CMakeFiles/promod3_sidechain.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 51%] Built target promod3_sidechain make -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/sidechain_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod/__init__.py /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages//promod3/sidechain/__init__.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 51%] Built target sidechain_pymod make -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/_sidechain.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/pymod/CMakeFiles/_sidechain.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 57%] Built target _sidechain make -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./extension_scheme.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./extension_scheme.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./gap.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./gap_extender.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap_extender.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./model.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./model.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./all_atom_relaxer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./all_atom_relaxer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./backbone_relaxer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./backbone_relaxer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./ccd.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./ccd.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./kic.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./kic.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./loop_candidate.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./loop_candidate.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo_closer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_closer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo_cooler.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_cooler.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo_sampler.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_sampler.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./monte_carlo_scorer.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_scorer.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./rigid_blocks.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./rigid_blocks.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./score_container.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./score_container.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./scoring_weights.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./scoring_weights.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./sidechain_reconstructor.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_reconstructor.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./sidechain_env_listener.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_env_listener.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./motif_finder.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./motif_finder.hh cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./robin_hood.h /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./robin_hood.h cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/src/./afdb.hh /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./afdb.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 57%] Built target promod3_modelling_headers make -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'modelling/src/CMakeFiles/promod3_modelling.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 67%] Built target promod3_modelling make -f modelling/pymod/CMakeFiles/_modelling.dir/build.make modelling/pymod/CMakeFiles/_modelling.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/_modelling.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/pymod/CMakeFiles/_modelling.dir/build.make modelling/pymod/CMakeFiles/_modelling.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'modelling/pymod/CMakeFiles/_modelling.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 73%] Built target _modelling make -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init___init__.py_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'core/init/CMakeFiles/init___init__.py_pymod.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 74%] Built target init___init__.py_pymod make -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'core/init/CMakeFiles/init_pymod.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 74%] Built target init_pymod make -f core/init/CMakeFiles/_init.dir/build.make core/init/CMakeFiles/_init.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/_init.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f core/init/CMakeFiles/_init.dir/build.make core/init/CMakeFiles/_init.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'core/init/CMakeFiles/_init.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 74%] Built target _init make -f loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 75%] Built target generate_loop_data_ff_lookup_charmm.dat make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 75%] Built target generate_loop_data_torsion_sampler.dat make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 75%] Built target generate_loop_data_torsion_sampler_coil.dat make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 76%] Built target generate_loop_data_torsion_sampler_extended.dat make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 76%] Built target generate_loop_data_torsion_sampler_helical.dat make -f loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 76%] Built target generate_loop_data_frag_db.dat make -f loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 77%] Built target generate_loop_data_structure_db.dat make -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/loop_data.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 77%] Built target loop_data make -f loop/tests/CMakeFiles/test_data_loop.dir/build.make loop/tests/CMakeFiles/test_data_loop.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests/CMakeFiles/test_data_loop.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/tests/CMakeFiles/test_data_loop.dir/build.make loop/tests/CMakeFiles/test_data_loop.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/1A88A.hhm /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/1A88A.hhm cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/1A88A.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/1A88A.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/1A88A_with_gap.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/1A88A_with_gap.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/1akyA.horiz /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/1akyA.horiz cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/1CRN.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/1CRN.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/3DEFA.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/3DEFA.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/4nyk.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/4nyk.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/all_aa.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/all_aa_prot_polar_hisd.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_polar_hisd.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/all_aa_prot_polar_hise.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_polar_hise.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/all_aa_prot_polar_hish.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_polar_hish.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/all_aa_prot_ref.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_ref.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/loop/tests/data/CHARMM27.dat /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/data/CHARMM27.dat make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 77%] Built target test_data_loop make -f loop/tests/CMakeFiles/test_suite_loop.dir/build.make loop/tests/CMakeFiles/test_suite_loop.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests/CMakeFiles/test_suite_loop.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/tests/CMakeFiles/test_suite_loop.dir/build.make loop/tests/CMakeFiles/test_suite_loop.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 77%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o -MF CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o -c 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_backbone.cc.o -MF CMakeFiles/test_suite_loop.dir/test_backbone.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_backbone.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/test_backbone.cc [ 79%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o -MF CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/test_forcefield.cc [ 79%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o -MF CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/test_hydrogens.cc [ 80%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o -MF CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/test_idx_handler.cc [ 80%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o -MF CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/test_mm_system_creator.cc [ 81%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o -MF CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/test_psipred_prediction.cc [ 81%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o -MF CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/test_sidechain_construction.cc [ 81%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o -MF CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/test_torsion_sampler.cc [ 82%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o -MF CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/test_structuredb.cc [ 82%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/tests.cc.o -MF CMakeFiles/test_suite_loop.dir/tests.cc.o.d -o CMakeFiles/test_suite_loop.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/loop/tests/tests.cc [ 84%] Linking CXX executable ../../tests/loop/test_suite_loop cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_loop.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_loop.dir/link.d CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o CMakeFiles/test_suite_loop.dir/test_all_atom_positions.cc.o CMakeFiles/test_suite_loop.dir/test_amino_acid_atoms.cc.o CMakeFiles/test_suite_loop.dir/test_backbone.cc.o CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o CMakeFiles/test_suite_loop.dir/tests.cc.o -o ../../tests/loop/test_suite_loop -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_loop.so.3.4.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 84%] Built target test_suite_loop make -f loop/tests/CMakeFiles/test_suite_loop_run.dir/build.make loop/tests/CMakeFiles/test_suite_loop_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/loop/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/loop/tests/CMakeFiles/test_suite_loop_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f loop/tests/CMakeFiles/test_suite_loop_run.dir/build.make loop/tests/CMakeFiles/test_suite_loop_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 84%] running checks for module loop cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/loop/test_suite_loop Running 68 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 84%] Built target test_suite_loop_run make -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data_dir.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 84%] Built target scoring_data_dir make -f scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 85%] Built target generate_scoring_data_aa_packing_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 85%] Built target generate_scoring_data_cb_packing_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 86%] Built target generate_scoring_data_cbeta_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_reduced_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_hbond_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_ss_agreement_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_torsion_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_aa_scorer.dat make -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/scoring_data.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 87%] Built target scoring_data make -f scoring/tests/CMakeFiles/test_data_scoring.dir/build.make scoring/tests/CMakeFiles/test_data_scoring.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests/CMakeFiles/test_data_scoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/tests/CMakeFiles/test_data_scoring.dir/build.make scoring/tests/CMakeFiles/test_data_scoring.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/scoring cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/scoring/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/tests/data/1CRNA.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/scoring/data/1CRNA.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/scoring/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/tests/data/3DEFA.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/scoring/data/3DEFA.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/scoring/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/scoring/tests/data/clash_test.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/scoring/data/clash_test.pdb make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 87%] Built target test_data_scoring make -f scoring/tests/CMakeFiles/test_suite_scoring.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests/CMakeFiles/test_suite_scoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/tests/CMakeFiles/test_suite_scoring.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 88%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o -MF CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o.d -o CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/tests/test_backbone_score_base.cc [ 88%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o -MF CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o.d -o CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/tests/test_backbone_scorer.cc [ 88%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o -MF CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o.d -o CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/tests/test_all_atom_scorer.cc /build/reproducible-path/promod3-3.4.1+ds/scoring/tests/test_all_atom_scorer.cc:73:33: warning: 'promod3::loop::AllAtomPositions scoring::{anonymous}::GenerateTestPos(const String&, uint, uint)' defined but not used [-Wunused-function] 73 | promod3::loop::AllAtomPositions GenerateTestPos( | ^~~~~~~~~~~~~~~ [ 89%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/tests.cc.o -MF CMakeFiles/test_suite_scoring.dir/tests.cc.o.d -o CMakeFiles/test_suite_scoring.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/scoring/tests/tests.cc [ 89%] Linking CXX executable ../../tests/scoring/test_suite_scoring cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_scoring.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_scoring.dir/link.d CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o CMakeFiles/test_suite_scoring.dir/tests.cc.o -o ../../tests/scoring/test_suite_scoring -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_scoring.so.3.4.1 ../../stage/lib64/libpromod3_loop.so.3.4.1 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 89%] Built target test_suite_scoring make -f scoring/tests/CMakeFiles/test_suite_scoring_run.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scoring/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scoring/tests/CMakeFiles/test_suite_scoring_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scoring/tests/CMakeFiles/test_suite_scoring_run.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 90%] running checks for module scoring cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/scoring && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/scoring/test_suite_scoring Running 20 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 90%] Built target test_suite_scoring_run make -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data_dir.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 90%] Built target sidechain_data_dir make -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 91%] Built target generate_sidechain_data_bb_dep_lib.dat make -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 91%] Built target generate_sidechain_data_lib.dat make -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/data/CMakeFiles/sidechain_data.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 91%] Built target sidechain_data make -f sidechain/tests/CMakeFiles/test_data_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_data_sidechain.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests/CMakeFiles/test_data_sidechain.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/tests/CMakeFiles/test_data_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_data_sidechain.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/sidechain cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/sidechain/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/sidechain/tests/data/all_sc.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/sidechain/data/all_sc.pdb make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 91%] Built target test_data_sidechain make -f sidechain/tests/CMakeFiles/test_suite_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests/CMakeFiles/test_suite_sidechain.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/tests/CMakeFiles/test_suite_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 91%] Building CXX object sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o -MF CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o.d -o CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/tests/test_frame_construction.cc [ 92%] Building CXX object sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o -MF CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o.d -o CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/tests/test_rotamers.cc [ 92%] Building CXX object sidechain/tests/CMakeFiles/test_suite_sidechain.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT sidechain/tests/CMakeFiles/test_suite_sidechain.dir/tests.cc.o -MF CMakeFiles/test_suite_sidechain.dir/tests.cc.o.d -o CMakeFiles/test_suite_sidechain.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/sidechain/tests/tests.cc [ 93%] Linking CXX executable ../../tests/sidechain/test_suite_sidechain cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_sidechain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_sidechain.dir/link.d CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o CMakeFiles/test_suite_sidechain.dir/tests.cc.o -o ../../tests/sidechain/test_suite_sidechain -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_sidechain.so.3.4.1 ../../stage/lib64/libpromod3_loop.so.3.4.1 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 93%] Built target test_suite_sidechain make -f sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/sidechain/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 93%] running checks for module sidechain cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/sidechain && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/sidechain/test_suite_sidechain Running 4 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 93%] Built target test_suite_sidechain_run make -f modelling/tests/CMakeFiles/test_data_modelling.dir/build.make modelling/tests/CMakeFiles/test_data_modelling.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_data_modelling.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_data_modelling.dir/build.make modelling/tests/CMakeFiles/test_data_modelling.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1cjx-1.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1cjx-1.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1cjx-1.pdb.gz /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1cjx-1.pdb.gz cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1crn.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1CRN.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1CRN.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1crn_build.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_build.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1crn_cut.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_cut.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1crn_final.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_final.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1crn_rec.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_rec.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1crn_sc.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_sc.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1crn_sc_test.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_sc_test.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1CRNA.hhm /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1CRNA.hhm cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1eye.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1eye.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1eye_rec.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1eye_rec.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1eye_sc_test.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1eye_sc_test.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1ITX-A-11_sidechain.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1ITX-A-11_sidechain.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1K5C-A-16_clash.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1K5C-A-16_clash.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/1mcg.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/1mcg.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/2aoh-1_cut.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/2aoh-1_cut.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/2aoh-1_cut_A.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/2aoh-1_cut_A.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/2aoh-1_cut_B.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/2aoh-1_cut_B.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/2dbs.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/2dbs.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/2jlp-1.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/2jlp-1.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/2jlp-1.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/2jlp-1.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/2xim-1.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/2xim-1.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/2xim-1.pdb.gz /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/2xim-1.pdb.gz cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/3b08-3.pdb.gz /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/3b08-3.pdb.gz cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/3b08-3.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/3b08-3.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/4nyk.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/4nyk.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/4R6K-A-13_sidechain.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/4R6K-A-13_sidechain.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/4ksl-1.pdb.gz /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/4ksl-1.pdb.gz cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/4ksl-1.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/4ksl-1.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/5d52-1.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/5d52-1_cut.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1_cut.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/5d52-1_cut_A.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1_cut_A.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/5d52-1_cut_B.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1_cut_B.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/CA-3cm91E.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/CA-3cm91E.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/CA-3cm91E.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/CA-3cm91E.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/cbeta.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/cbeta.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/cbeta.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/cbeta.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/del.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/del.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/ff_NAD.dat /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/ff_NAD.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/gly.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/gly_on_top.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly_on_top.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/gly_almost_on_top.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly_almost_on_top.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/gly_shifted_nter.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly_shifted_nter.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/hetero-punched.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/hetero-punched.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/ins.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/ins.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/modelCApartial-5tgl1A.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/modelCApartial-5tgl1A.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/neighbor-punched.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/neighbor-punched.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/port_frag_db.dat /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/port_frag_db.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/port_str_db.dat /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/port_str_db.dat cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/sep.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/sep.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/sep.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/sep.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/seq.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/seq.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/smtl2bl4.1.pdb /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/smtl2bl4.1.pdb cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/ter.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/ter.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/terminal_deletion_aln.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/terminal_deletion_aln.fasta cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/data/double_gap_aln.fasta /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/data/double_gap_aln.fasta make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 93%] Built target test_data_modelling make -f modelling/tests/CMakeFiles/test_suite_modelling.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_suite_modelling.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_suite_modelling.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 94%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o -MF CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o.d -o CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_loop_candidates.cc [ 94%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o -MF CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o.d -o CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_loop_closing.cc [ 95%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o -MF CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o.d -o CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_sidechain_reconstructor.cc [ 95%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/tests.cc.o -MF CMakeFiles/test_suite_modelling.dir/tests.cc.o.d -o CMakeFiles/test_suite_modelling.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/tests.cc [ 95%] Linking CXX executable ../../tests/modelling/test_suite_modelling cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_modelling.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_modelling.dir/link.d CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o CMakeFiles/test_suite_modelling.dir/tests.cc.o -o ../../tests/modelling/test_suite_modelling -L/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_modelling.so.3.4.1 ../../stage/lib64/libpromod3_scoring.so.3.4.1 ../../stage/lib64/libpromod3_sidechain.so.3.4.1 ../../stage/lib64/libpromod3_loop.so.3.4.1 ../../stage/lib64/libpromod3_core.so.3.4.1 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 95%] Built target test_suite_modelling make -f modelling/tests/CMakeFiles/test_suite_modelling_run.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_suite_modelling_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_suite_modelling_run.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 96%] running checks for module modelling cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling/test_suite_modelling Running 7 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 96%] Built target test_suite_modelling_run make -f modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/build.make modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/build.make modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 96%] running checks test_close_gaps.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_close_gaps.py" Compound library not available. Some functionality may not work as expected. ................................. ---------------------------------------------------------------------- Ran 33 tests in 40.264s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 96%] Built target test_close_gaps.py_run make -f modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/build.make modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/build.make modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 96%] running checks test_gap_extension.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_gap_extension.py" Compound library not available. Some functionality may not work as expected. ...... ---------------------------------------------------------------------- Ran 6 tests in 0.038s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 96%] Built target test_gap_extension.py_run make -f modelling/tests/CMakeFiles/test_modelling.py_run.dir/build.make modelling/tests/CMakeFiles/test_modelling.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_modelling.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_modelling.py_run.dir/build.make modelling/tests/CMakeFiles/test_modelling.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 97%] running checks test_modelling.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_modelling.py" Compound library not available. Some functionality may not work as expected. ..............Alignment-structure mismatch at pos 0 in chain A, alignment is 'X' structure residue is 'S'. Ok for modified residue SEP. ...residue A.GLY8 has conflicting atom CA - skipping atom. residue A.GLY8 is missing atoms CA ........ ---------------------------------------------------------------------- Ran 25 tests in 0.243s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 97%] Built target test_modelling.py_run make -f modelling/tests/CMakeFiles/test_pipeline.py_run.dir/build.make modelling/tests/CMakeFiles/test_pipeline.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_pipeline.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_pipeline.py_run.dir/build.make modelling/tests/CMakeFiles/test_pipeline.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 97%] running checks test_pipeline.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_pipeline.py" Compound library not available. Some functionality may not work as expected. Switched to slower reference platform of OpenMM! ............... ---------------------------------------------------------------------- Ran 15 tests in 81.944s OK OpenMM CPU platform not available. Skipping almost_on_top check. phenix.molprobity is missing. Please install it and make it available in your PATH to execute test testMolProbity. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 97%] Built target test_pipeline.py_run make -f modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/build.make modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/build.make modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 97%] running checks test_ring_punches.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_ring_punches.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 0.258s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 97%] Built target test_ring_punches.py_run make -f modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/build.make modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/build.make modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] running checks test_sidechain_reconstruction.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_sidechain_reconstruction.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 3.971s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] Built target test_sidechain_reconstruction.py_run make -f modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/build.make modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/build.make modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] running checks test_alignment_fiddling.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/modelling/tests/test_alignment_fiddling.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 0.018s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] Built target test_alignment_fiddling.py_run make -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scripts /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_pm.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.1+ds/scripts/pm.in -DOUT_FILE=pm -DOST_ROOT="/usr" -DLIBDIR=lib64 -DLIBEXECPATH=libexec/promod3 -DPYTHON_MODULE_PATH=python3.12/site-packages/ -DOST_PYMOD_PATH=/usr/lib/python3/dist-packages -DPython_EXECUTABLE=/usr/bin/python3 -P /build/reproducible-path/promod3-3.4.1+ds/cmake_support/substitute.cmake make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] Built target subst_pm make -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/scripts /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/promod3_scripts.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different pm /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/bin/pm cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/scripts/pm /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/bin/pm make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] Built target promod3_scripts make -f actions/tests/CMakeFiles/test_action_build-model.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-model.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_action_build-model.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_action_build-model.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-model.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] running checks test_action_build-model.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/actions/tests/test_action_build-model.py" Compound library not available. Some functionality may not work as expected. ... ---------------------------------------------------------------------- Ran 3 tests in 8.603s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] Built target test_action_build-model.py_run make -f actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] running checks test_action_build-rawmodel.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/actions/tests/test_action_build-rawmodel.py" Compound library not available. Some functionality may not work as expected. ... ---------------------------------------------------------------------- Ran 3 tests in 2.765s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [ 98%] Built target test_action_build-rawmodel.py_run make -f actions/tests/CMakeFiles/test_action_help.py_run.dir/build.make actions/tests/CMakeFiles/test_action_help.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_action_help.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_action_help.py_run.dir/build.make actions/tests/CMakeFiles/test_action_help.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] running checks test_action_help.py cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/stage/lib64/python3.12/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.1+ds/actions/tests/test_action_help.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 0.061s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target test_action_help.py_run make -f CMakeFiles/codetest.dir/build.make CMakeFiles/codetest.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/CMakeFiles/codetest.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/codetest.dir/build.make CMakeFiles/codetest.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/codetest.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target codetest make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/CMakeFiles/check.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' [100%] Built target check make[4]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/promod3-3.4.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/promod3-3.4.1+ds -B/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/config.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_core.so.3.4.1 -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_core.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_core.so.3.4.1" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_core.so -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./check_io.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./cluster.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./dynamic_spatial_organizer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./export_helper.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./geom_base.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./geom_stems.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./message.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./portable_binary_data_sink.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./portable_binary_data_source.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./portable_binary_serializer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./runtime_profiling.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./superpose.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./enumerator.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./graph.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./tree.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./tetrahedral_polytope.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./graph_minimizer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/core/./eigen_types.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/core/_core.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/core/_core.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/core/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/core/helper.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/core/pm3argparse.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_loop.so.3.4.1 -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_loop.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_loop.so.3.4.1" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_loop.so -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./all_atom_env.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./all_atom_positions.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./amino_acid_atoms.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./backbone.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./bb_trace_param.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./data_bag.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./dense_hash_table.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./dense_map.hh -- Up-to-date: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./dense_map.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./density_creator.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./forcefield_lookup.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./frag_db.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./fragger.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./hydrogen_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./hydrogen_rule_lookup.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./idx_handler.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./loop_object_loader.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./mm_system_creator.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./psipred_prediction.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./stem_geom.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./structure_db.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./torsion_sampler.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./ushort_vec.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./sidechain_atom_rule_lookup.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./sidechain_atom_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/loop/./structure_db_custom_types.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/loop/_loop.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/loop/_loop.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/loop/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler_coil.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler_extended.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler_helical.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/loop_data/frag_db.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/loop_data/structure_db.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/loop_data/ff_lookup_charmm.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_scoring.so.3.4.1 -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_scoring.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_scoring.so.3.4.1" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_scoring.so -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./backbone_score_base.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./backbone_overall_scorer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./scoring_object_loader.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./cbeta_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./cb_packing_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./cbeta_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./reduced_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./reduced_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./clash_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./clash_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./density_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./hbond_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./hbond_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./ss_agreement_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./ss_agreement_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./torsion_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./pairwise_scoring_function.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./pairwise_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./constraint_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_score_base.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_overall_scorer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_interaction_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_interaction_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_packing_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_clash_score.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/scoring/./scwrl3_energy_functions.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/scoring/_scoring.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/scoring/_scoring.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/scoring/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/scoring_data/cb_packing_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/scoring_data/cbeta_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/scoring_data/reduced_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/scoring_data/hbond_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/scoring_data/ss_agreement_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/scoring_data/torsion_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/scoring_data/aa_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/scoring_data/aa_packing_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so.3.4.1 -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so.3.4.1" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./bb_dep_rotamer_lib.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./disulfid.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./frame.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_graph.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./particle.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./particle_scoring_base.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./particle_scoring.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl4_particle_scoring.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl3_particle_scoring.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./vina_particle_scoring.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_cruncher.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_density.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_group.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_id.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lib.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lib_entry.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lib_reader.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./sidechain_connector.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./sidechain_object_loader.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lookup.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl4_rotamer_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl3_rotamer_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./vina_rotamer_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/sidechain/./subrotamer_optimizer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/sidechain/_sidechain.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/sidechain/_sidechain.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/sidechain/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/sidechain_data/lib.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/share/promod3/sidechain_data/bb_dep_lib.dat -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_modelling.so.3.4.1 -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_modelling.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_modelling.so.3.4.1" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/libpromod3_modelling.so -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./extension_scheme.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./gap.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./gap_extender.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./model.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./all_atom_relaxer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./backbone_relaxer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./ccd.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./kic.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./loop_candidate.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_closer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_cooler.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_sampler.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_scorer.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./rigid_blocks.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./score_container.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./scoring_weights.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./sidechain_reconstructor.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./sidechain_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./motif_finder.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./robin_hood.h -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/include/promod3/modelling/./afdb.hh -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_modelling.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_modelling.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_closegaps.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_molprobity.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_pipeline.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_ring_punches.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_denovo.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_fragger_handle.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_reconstruct_sidechains.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_monte_carlo.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_mhandle_helper.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_alignment_fiddling.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_raw_model.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_planar_rings.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/lib64/python3.12/site-packages/promod3/modelling/_afdb_modelling.py -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/bin/pm -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/libexec/promod3/pm-build-model -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/libexec/promod3/pm-build-rawmodel -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/libexec/promod3/pm-help -- Installing: /build/reproducible-path/promod3-3.4.1+ds/debian/tmp/usr/libexec/promod3/pm-build-sidechains make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds' mv debian/tmp/usr/bin/pm debian/tmp/usr/bin/promod # See debian/README.Debian make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds' dh_install for PKG in core loop modelling scoring sidechain; do \ dh_install -p libpromod3-${PKG}-dev usr/include/promod3/${PKG}; \ dh_install -p libpromod3-${PKG}-dev usr/lib64/libpromod3_${PKG}.so usr/lib/x86_64-linux-gnu; \ dh_install -p libpromod3-${PKG}3.4 usr/lib64/libpromod3_${PKG}.so.* usr/lib/x86_64-linux-gnu; \ done make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/promod3-3.4.1+ds' dh_install rm -rf debian/tmp/usr/include/promod3 debian/tmp/usr/lib64 make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.1+ds' dh_installdocs dh_installchangelogs dh_python3 I: dh_python3 fs:421: renaming _modelling.so to _modelling.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _sidechain.so to _sidechain.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _core.so to _core.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _loop.so to _loop.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _scoring.so to _scoring.cpython-312-x86_64-linux-gnu.so dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package promod3: substitution variable ${python3:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libpromod3-core-dev' in '../libpromod3-core-dev_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-loop-dev' in '../libpromod3-loop-dev_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-core3.4' in '../libpromod3-core3.4_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-loop3.4-dbgsym' in '../libpromod3-loop3.4-dbgsym_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-loop3.4' in '../libpromod3-loop3.4_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-modelling-dev' in '../libpromod3-modelling-dev_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-core3.4-dbgsym' in '../libpromod3-core3.4-dbgsym_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-modelling3.4' in '../libpromod3-modelling3.4_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-modelling3.4-dbgsym' in '../libpromod3-modelling3.4-dbgsym_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-scoring-dev' in '../libpromod3-scoring-dev_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-scoring3.4' in '../libpromod3-scoring3.4_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-scoring3.4-dbgsym' in '../libpromod3-scoring3.4-dbgsym_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'promod3' in '../promod3_3.4.1+ds-1_all.deb'. dpkg-deb: building package 'libpromod3-sidechain3.4' in '../libpromod3-sidechain3.4_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'python3-promod3' in '../python3-promod3_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-sidechain-dev' in '../libpromod3-sidechain-dev_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'python3-promod3-dbgsym' in '../python3-promod3-dbgsym_3.4.1+ds-1_amd64.deb'. dpkg-deb: building package 'promod3-data' in '../promod3-data_3.4.1+ds-1_all.deb'. dpkg-deb: building package 'libpromod3-sidechain3.4-dbgsym' in '../libpromod3-sidechain3.4-dbgsym_3.4.1+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../promod3_3.4.1+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../promod3_3.4.1+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2334390/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2334390/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2334390 and its subdirectories I: Current time: Tue Dec 17 14:40:58 +14 2024 I: pbuilder-time-stamp: 1734396058