I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 29 22:49:51 +14 2025 I: pbuilder-time-stamp: 1764406191 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [opentsne_1.0.2-2.dsc] I: copying [./opentsne_1.0.2.orig.tar.gz] I: copying [./opentsne_1.0.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Oct 1 17:40:13 2024 gpgv: using RSA key B415360F591EB6DD73AFFB83D30DECD2599322FC gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.2-2.dsc: no acceptable signature found dpkg-source: info: extracting opentsne in opentsne-1.0.2 dpkg-source: info: unpacking opentsne_1.0.2.orig.tar.gz dpkg-source: info: unpacking opentsne_1.0.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-one-test-on-i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2846321/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 29 08:50 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2846321/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2846321/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=99c81e9a3479413a9aa0f752943659c5 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2846321 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eFXyol3l/pbuilderrc_rPLJ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eFXyol3l/b2 --logfile b2/build.log opentsne_1.0.2-2.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2846321/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-decorator{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-runner{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx psmisc python3-matplotlib python3-pil python3-psutil python3-pygments python3-simplejson wget 0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 76.8 MB of archives. After unpacking 339 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-1 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-1 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-1 [1965 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-1 [2449 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.3-1 [157 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2 [781 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-2 [347 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-2 [617 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2 [809 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-2 [51.0 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-2 [2113 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-7 [837 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.7-1 [2149 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.7-1 [5122 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get: 85 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.12.6-1 [1064 B] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.7-1 [505 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.12.6-1 [1068 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.3.2-4 [216 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-pytest-runner all 2.11.1-4 [8432 B] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.13.1-5 [16.7 MB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6 [3657 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB] Fetched 76.8 MB in 4s (21.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_amd64.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Nov 29 08:50:22 UTC 2025. Universal Time is now: Sat Nov 29 08:50:22 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.6.3-1) ... Setting up libfftw3-quad3:amd64 (3.3.10-2) ... Setting up libproc2-0:amd64 (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libfftw3-double3:amd64 (3.3.10-2) ... Setting up libgfortran5:amd64 (14.2.0-7) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2846321/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2846321/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/opentsne-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../opentsne_1.0.2-2_source.changes dpkg-buildpackage: info: source package opentsne dpkg-buildpackage: info: source version 1.0.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Roland Mas dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/opentsne-1.0.2' # remove the cython generated file to force rebuild rm -f openTSNE/_tsne.cpp openTSNE/kl_divergence.cpp openTSNE/quad_tree.cpp openTSNE/_matrix_mul/matrix_mul_fftw3.cpp openTSNE/_matrix_mul/matrix_mul_numpy.cpp make[1]: Leaving directory '/build/reproducible-path/opentsne-1.0.2' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne * Building wheel... FFTW3 header files found. Using FFTW implementation of FFT. running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/version.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/sklearn.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/callbacks.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/utils.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/affinity.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/__init__.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/metrics.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/nearest_neighbors.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/tsne.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/initialization.py -> build/lib.linux-x86_64-cpython-312/openTSNE creating build/lib.linux-x86_64-cpython-312/openTSNE/_matrix_mul copying openTSNE/_matrix_mul/__init__.py -> build/lib.linux-x86_64-cpython-312/openTSNE/_matrix_mul creating build/lib.linux-x86_64-cpython-312/openTSNE/dependencies copying openTSNE/dependencies/__init__.py -> build/lib.linux-x86_64-cpython-312/openTSNE/dependencies creating build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/annoy copying openTSNE/dependencies/annoy/__init__.py -> build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/annoy running build_ext creating build/reproducible-path/opentsne-1.0.2/tmper7c7xyn x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -c /build/reproducible-path/opentsne-1.0.2/tmper7c7xyn/omp.c -o build/reproducible-path/opentsne-1.0.2/tmper7c7xyn/omp.o x86_64-linux-gnu-gcc build/reproducible-path/opentsne-1.0.2/tmper7c7xyn/omp.o -o /build/reproducible-path/opentsne-1.0.2/tmper7c7xyn/omp.c performance hint: openTSNE/quad_tree.pyx:73:5: Exception check on 'update_center_of_mass' will always require the GIL to be acquired. Possible solutions: 1. Declare 'update_center_of_mass' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'update_center_of_mass' to allow an error code to be returned. performance hint: openTSNE/quad_tree.pxd:21:18: No exception value declared for 'is_close' in pxd file. Users cimporting this function and calling it without the gil will always require an exception check. Suggest adding an explicit exception value. warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' Found openmp. Compiling with openmp flags... Compiling openTSNE/quad_tree.pyx because it changed. [1/1] Cythonizing openTSNE/quad_tree.pyx building 'openTSNE.quad_tree' extension creating build/temp.linux-x86_64-cpython-312/openTSNE x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/quad_tree.cpp -o build/temp.linux-x86_64-cpython-312/openTSNE/quad_tree.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/quad_tree.cpp:1279: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/openTSNE/quad_tree.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-312/openTSNE/quad_tree.cpython-312-x86_64-linux-gnu.so -fopenmp warning: openTSNE/_tsne.pyx:9:7: implicit declaration of 'np' performance hint: openTSNE/_tsne.pyx:225:5: Exception check on '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dest_sig' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dtype' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg_base' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_series' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'last_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_matches' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_candidates' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dst_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_matches' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_candidates' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sn' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'type_match' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'candidates' warning: openTSNE/_tsne.pyx:540:8: implicit declaration of 'coord_max' warning: openTSNE/_tsne.pyx:542:8: implicit declaration of 'coord_min' performance hint: openTSNE/_tsne.pyx:207:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. performance hint: openTSNE/_tsne.pyx:234:56: Exception check after calling 'is_close' will always require the GIL to be acquired. Possible solutions: 1. Declare 'is_close' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Declare any exception value explicitly for functions in pxd files. performance hint: openTSNE/_tsne.pyx:275:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. Compiling openTSNE/_tsne.pyx because it changed. [1/1] Cythonizing openTSNE/_tsne.pyx building 'openTSNE._tsne' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/_tsne.cpp -o build/temp.linux-x86_64-cpython-312/openTSNE/_tsne.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/_tsne.cpp:1279: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/openTSNE/_tsne.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-312/openTSNE/_tsne.cpython-312-x86_64-linux-gnu.so -fopenmp warning: openTSNE/kl_divergence.pyx:9:7: implicit declaration of 'np' warning: openTSNE/kl_divergence.pyx:17:19: implicit declaration of 'estimate_positive_gradient_nn' Compiling openTSNE/kl_divergence.pyx because it changed. [1/1] Cythonizing openTSNE/kl_divergence.pyx building 'openTSNE.kl_divergence' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/kl_divergence.cpp -o build/temp.linux-x86_64-cpython-312/openTSNE/kl_divergence.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/kl_divergence.cpp:1279: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/openTSNE/kl_divergence.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-312/openTSNE/kl_divergence.cpython-312-x86_64-linux-gnu.so -fopenmp building 'openTSNE.dependencies.annoy.annoylib' extension creating build/temp.linux-x86_64-cpython-312/openTSNE/dependencies/annoy x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/dependencies/annoy/annoymodule.cc -o build/temp.linux-x86_64-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -std=c++14 -DANNOYLIB_MULTITHREADED_BUILD -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312-x86_64-linux-gnu.so -fopenmp warning: openTSNE/_matrix_mul/matrix_mul_fftw3.pyx:9:7: implicit declaration of 'np' Compiling openTSNE/_matrix_mul/matrix_mul_fftw3.pyx because it changed. [1/1] Cythonizing openTSNE/_matrix_mul/matrix_mul_fftw3.pyx building 'openTSNE._matrix_mul.matrix_mul' extension creating build/temp.linux-x86_64-cpython-312/openTSNE/_matrix_mul x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/_matrix_mul/matrix_mul_fftw3.cpp -o build/temp.linux-x86_64-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/_matrix_mul/matrix_mul_fftw3.cpp:1282: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/x86_64-linux-gnu -lfftw3 -o build/lib.linux-x86_64-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-x86_64-linux-gnu.so -fopenmp installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/openTSNE creating build/bdist.linux-x86_64/wheel/openTSNE/_matrix_mul copying build/lib.linux-x86_64-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE/_matrix_mul copying build/lib.linux-x86_64-cpython-312/openTSNE/_matrix_mul/__init__.py -> build/bdist.linux-x86_64/wheel/./openTSNE/_matrix_mul copying build/lib.linux-x86_64-cpython-312/openTSNE/version.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/sklearn.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/callbacks.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/utils.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/_tsne.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/kl_divergence.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/quad_tree.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/affinity.py -> build/bdist.linux-x86_64/wheel/./openTSNE creating build/bdist.linux-x86_64/wheel/openTSNE/dependencies creating build/bdist.linux-x86_64/wheel/openTSNE/dependencies/annoy copying build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/annoy/__init__.py -> build/bdist.linux-x86_64/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/__init__.py -> build/bdist.linux-x86_64/wheel/./openTSNE/dependencies copying build/lib.linux-x86_64-cpython-312/openTSNE/__init__.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/metrics.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/nearest_neighbors.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/tsne.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/initialization.py -> build/bdist.linux-x86_64/wheel/./openTSNE running install_egg_info running egg_info creating openTSNE.egg-info writing openTSNE.egg-info/PKG-INFO writing dependency_links to openTSNE.egg-info/dependency_links.txt writing requirements to openTSNE.egg-info/requires.txt writing top-level names to openTSNE.egg-info/top_level.txt writing manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'openTSNE' adding license file 'LICENSE' writing manifest file 'openTSNE.egg-info/SOURCES.txt' Copying openTSNE.egg-info to build/bdist.linux-x86_64/wheel/./openTSNE-1.0.2.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/openTSNE-1.0.2.dist-info/WHEEL creating '/build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/.tmp-fzk4ayia/openTSNE-1.0.2-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'openTSNE/__init__.py' adding 'openTSNE/_tsne.cpython-312-x86_64-linux-gnu.so' adding 'openTSNE/affinity.py' adding 'openTSNE/callbacks.py' adding 'openTSNE/initialization.py' adding 'openTSNE/kl_divergence.cpython-312-x86_64-linux-gnu.so' adding 'openTSNE/metrics.py' adding 'openTSNE/nearest_neighbors.py' adding 'openTSNE/quad_tree.cpython-312-x86_64-linux-gnu.so' adding 'openTSNE/sklearn.py' adding 'openTSNE/tsne.py' adding 'openTSNE/utils.py' adding 'openTSNE/version.py' adding 'openTSNE/_matrix_mul/__init__.py' adding 'openTSNE/_matrix_mul/matrix_mul.cpython-312-x86_64-linux-gnu.so' adding 'openTSNE/dependencies/__init__.py' adding 'openTSNE/dependencies/annoy/__init__.py' adding 'openTSNE/dependencies/annoy/annoylib.cpython-312-x86_64-linux-gnu.so' adding 'openTSNE-1.0.2.dist-info/LICENSE' adding 'openTSNE-1.0.2.dist-info/METADATA' adding 'openTSNE-1.0.2.dist-info/WHEEL' adding 'openTSNE-1.0.2.dist-info/top_level.txt' adding 'openTSNE-1.0.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built openTSNE-1.0.2-cp312-cp312-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build configfile: pyproject.toml plugins: typeguard-4.3.0 collected 163 items tests/test_affinities.py ......................... [ 15%] tests/test_correctness.py .......................... [ 31%] tests/test_different_usages.py ............ [ 38%] tests/test_nearest_neighbors.py ..................ssssssssssssssssssssss [ 63%] ss [ 64%] tests/test_sklearn_wrapper.py ... [ 66%] tests/test_tsne.py ...ss............................................... [ 98%] tests/test_utils.py ... [100%] =============================== warnings summary =============================== tests/test_correctness.py::TestDataMatricesWithDuplicatedRows::test_works_without_error /usr/lib/python3/dist-packages/sklearn/preprocessing/_discretization.py:248: FutureWarning: In version 1.5 onwards, subsample=200_000 will be used by default. Set subsample explicitly to silence this warning in the mean time. Set subsample=None to disable subsampling explicitly. warnings.warn( tests/test_different_usages.py::TestUsageWithCustomAffinity::test_affinity tests/test_different_usages.py::TestUsageWithCustomAffinity::test_precomputed_affinity tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_distances tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_neighbors tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_queryable_knn_index tests/test_tsne.py::TestAffinityIntegration::test_transform_with_nonstandard_affinity /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build/openTSNE/affinity.py:1219: FutureWarning: Using `mean` symmetrization, but the default behaviour is going to change to `max` in future versions. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============ 137 passed, 26 skipped, 7 warnings in 68.59s (0:01:08) ============ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-opentsne/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_numpy3 -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-opentsne' in '../python3-opentsne_1.0.2-2_amd64.deb'. dpkg-deb: building package 'python3-opentsne-dbgsym' in '../python3-opentsne-dbgsym_1.0.2-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../opentsne_1.0.2-2_amd64.buildinfo dpkg-genchanges --build=binary -O../opentsne_1.0.2-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2846321/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2846321/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2846321 and its subdirectories I: Current time: Sat Nov 29 22:52:52 +14 2025 I: pbuilder-time-stamp: 1764406372