I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 6 22:34:16 +14 2024 I: pbuilder-time-stamp: 1733474056 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [openstructure_2.9.0-2.dsc] I: copying [./openstructure_2.9.0.orig.tar.xz] I: copying [./openstructure_2.9.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 5 11:00:15 2024 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./openstructure_2.9.0-2.dsc: no acceptable signature found dpkg-source: info: extracting openstructure in openstructure-2.9.0 dpkg-source: info: unpacking openstructure_2.9.0.orig.tar.xz dpkg-source: info: unpacking openstructure_2.9.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python-dist-packages.patch dpkg-source: info: applying fix-quotes-in-ENV.patch dpkg-source: info: applying skip-network-tests.patch dpkg-source: info: applying add-python3-shebangs.patch dpkg-source: info: applying ost_config.patch dpkg-source: info: applying skip-dssp-tests.patch dpkg-source: info: applying increase-tolerance-test_io_sequence_profile.patch dpkg-source: info: applying skip-test_io_img.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1423805/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 6 08:35 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1423805/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1423805/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=9467b501256d490eabfdb60d7f93cdce LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1423805 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.G9x8LRj3/pbuilderrc_qRuT --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.G9x8LRj3/b2 --logfile b2/build.log openstructure_2.9.0-2.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1423805/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: clustalw, cmake, debhelper-compat (= 13), dh-python, dssp, libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libopenmm-dev, libopenmm-plugins, libparasail-dev, libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib, python3-numpy, python3-pil, python3-pyqt5, python3-scipy, qtbase5-dev, voronota dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on clustalw; however: Package clustalw is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dssp; however: Package dssp is not installed. pbuilder-satisfydepends-dummy depends on libboost-all-dev; however: Package libboost-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libglu1-mesa-dev; however: Package libglu1-mesa-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmm-dev; however: Package libopenmm-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmm-plugins; however: Package libopenmm-plugins is not installed. pbuilder-satisfydepends-dummy depends on libparasail-dev; however: Package libparasail-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5opengl5-dev; however: Package libqt5opengl5-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pil; however: Package python3-pil is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5; however: Package python3-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev; however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on voronota; however: Package voronota is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} clustalw{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dssp{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libamd-comgr2{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-all-dev{a} libboost-atomic-dev{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-container-dev{a} libboost-container1.83-dev{a} libboost-container1.83.0{a} libboost-context-dev{a} libboost-context1.83-dev{a} libboost-context1.83.0{a} libboost-coroutine-dev{a} libboost-coroutine1.83-dev{a} libboost-coroutine1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-exception-dev{a} libboost-exception1.83-dev{a} libboost-fiber-dev{a} libboost-fiber1.83-dev{a} libboost-fiber1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-graph-dev{a} libboost-graph-parallel-dev{a} libboost-graph-parallel1.83-dev{a} libboost-graph-parallel1.83.0{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-json-dev{a} libboost-json1.83-dev{a} libboost-json1.83.0{a} libboost-locale-dev{a} libboost-locale1.83-dev{a} libboost-locale1.83.0{a} libboost-log-dev{a} libboost-log1.83-dev{a} libboost-log1.83.0{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi-python-dev{a} libboost-mpi-python1.83-dev{a} libboost-mpi-python1.83.0{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-nowide-dev{a} libboost-nowide1.83-dev{a} libboost-nowide1.83.0{a} libboost-numpy-dev{a} libboost-numpy1.83-dev{a} libboost-numpy1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-random-dev{a} libboost-random1.83-dev{a} libboost-random1.83.0{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-stacktrace-dev{a} libboost-stacktrace1.83-dev{a} libboost-stacktrace1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost-tools-dev{a} libboost-type-erasure-dev{a} libboost-type-erasure1.83-dev{a} libboost-type-erasure1.83.0{a} libboost-url-dev{a} libboost-url1.83-dev{a} libboost-url1.83.0{a} libboost-wave-dev{a} libboost-wave1.83-dev{a} libboost-wave1.83.0{a} libboost1.83-dev{a} libboost1.83-tools-dev{a} libbrotli1{a} libcbor0.10{a} libcifpp-data{a} libcifpp7{a} libcom-err2{a} libcups2t64{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libice6{a} libicu-dev{a} libicu72{a} libimagequant0{a} libinput-bin{a} libinput10{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc-dev{a} liblerc4{a} libllvm17t64{a} libllvm19{a} libltdl-dev{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopenmm-dev{a} libopenmm-plugins{a} libopenmm8.1{a} libopenmpi-dev{a} libopenmpi40{a} libparasail-dev{a} libparasail8{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5opengl5-dev{a} libqt5opengl5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libraqm0{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm6{a} libsqlite3-dev{a} libssh2-1t64{a} libtcl8.6{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libucx0{a} libuv1t64{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-pyqt5{a} python3-pyqt5.sip{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} qt5-qmake{a} qt5-qmake-bin{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} voronota{a} x11-common{a} x11proto-dev{a} xkb-data{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus isympy-common javascript-common krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libjson-xs-perl libldap-common libmail-sendmail-perl libpaper-utils libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-olefile python3-pooch qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xauth xdg-user-dirs 0 packages upgraded, 482 newly installed, 0 to remove and 0 not upgraded. Need to get 344 MB of archives. After unpacking 1782 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-1 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-1 [2163 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-1 [1970 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-1 [677 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:9.9p1-3 [991 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 68 http://deb.debian.org/debian unstable/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.1-1 [2267 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.1-1 [11.9 MB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 91 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libcifpp-data all 7.0.7-3 [484 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libcifpp7 amd64 7.0.7-3 [1027 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 dssp amd64 4.4.10-1 [697 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get: 119 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 52.0-2+b1 [62.2 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 52.0-2+b1 [343 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-18 [23.6 MB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 129 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.1.2+ds-1 [59.8 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-2 [535 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-15 [112 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-15 [44.1 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-6 [203 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-15 [48.1 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-3.2+b2 [10.6 MB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-3.2+b2 [234 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-3.2+b2 [235 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libboost-atomic-dev amd64 1.83.0.2+b2 [3904 B] Get: 144 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3.2+b2 [240 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-3.2+b2 [246 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 147 http://deb.debian.org/debian unstable/main amd64 libboost-container1.83.0 amd64 1.83.0-3.2+b2 [259 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libboost-container1.83-dev amd64 1.83.0-3.2+b2 [265 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libboost-container-dev amd64 1.83.0.2+b2 [4072 B] Get: 150 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-3.2+b2 [230 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-3.2+b2 [333 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-3.2+b2 [373 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-3.2+b2 [239 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-3.2+b2 [230 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-3.2+b2 [232 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2+b2 [269 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-3.2+b2 [277 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libboost-context1.83.0 amd64 1.83.0-3.2+b2 [231 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libboost-context1.83-dev amd64 1.83.0-3.2+b2 [233 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libboost-context-dev amd64 1.83.0.2+b2 [3804 B] Get: 161 http://deb.debian.org/debian unstable/main amd64 libboost-coroutine1.83.0 amd64 1.83.0-3.2+b2 [234 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libboost-coroutine1.83-dev amd64 1.83.0-3.2+b2 [236 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libboost-coroutine-dev amd64 1.83.0.2+b2 [3868 B] Get: 164 http://deb.debian.org/debian unstable/main amd64 libboost-date-time-dev amd64 1.83.0.2+b2 [3596 B] Get: 165 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 166 http://deb.debian.org/debian unstable/main amd64 libboost-exception1.83-dev amd64 1.83.0-3.2+b2 [230 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libboost-exception-dev amd64 1.83.0.2+b2 [3584 B] Get: 168 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3.2+b2 [282 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-3.2+b2 [298 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libboost-fiber1.83.0 amd64 1.83.0-3.2+b2 [254 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libboost-fiber1.83-dev amd64 1.83.0-3.2+b2 [265 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libboost-fiber-dev amd64 1.83.0.2+b2 [4028 B] Get: 173 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 174 http://deb.debian.org/debian unstable/main amd64 libboost-graph1.83.0 amd64 1.83.0-3.2+b2 [359 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-3.2+b2 [330 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-3.2+b2 [347 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libboost-test1.83.0 amd64 1.83.0-3.2+b2 [471 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libboost-test1.83-dev amd64 1.83.0-3.2+b2 [541 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libboost-graph1.83-dev amd64 1.83.0-3.2+b2 [383 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libboost-graph-dev amd64 1.83.0.2+b2 [3700 B] Get: 182 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 52.0-2+b1 [70.4 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.15-4+b1 [20.0 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b1 [14.2 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 5.0.4-1 [661 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 52.0-2+b1 [28.2 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 52.0-2+b1 [43.4 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.6-3 [2360 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83.0 amd64 1.83.0-3.2+b2 [271 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libboost-graph-parallel1.83.0 amd64 1.83.0-3.2+b2 [280 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libboost-graph-parallel1.83-dev amd64 1.83.0-3.2+b2 [284 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libboost-graph-parallel-dev amd64 1.83.0.2+b2 [3728 B] Get: 203 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-3.2+b2 [261 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 205 http://deb.debian.org/debian unstable/main amd64 libboost-json1.83.0 amd64 1.83.0-3.2+b2 [357 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libboost-json1.83-dev amd64 1.83.0-3.2+b2 [373 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libboost-json-dev amd64 1.83.0.2+b2 [3704 B] Get: 208 http://deb.debian.org/debian unstable/main amd64 libboost-locale1.83.0 amd64 1.83.0-3.2+b2 [472 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libboost-locale1.83-dev amd64 1.83.0-3.2+b2 [555 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libboost-locale-dev amd64 1.83.0.2+b2 [3924 B] Get: 211 http://deb.debian.org/debian unstable/main amd64 libboost-log1.83.0 amd64 1.83.0-3.2+b2 [708 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libboost-log1.83-dev amd64 1.83.0-3.2+b2 [879 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libboost-log-dev amd64 1.83.0.2+b2 [3796 B] Get: 214 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-3.2+b2 [524 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-3.2+b2 [571 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 217 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.6-3 [97.0 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 52.0-2+b1 [636 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-8 [393 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.4.7-8 [165 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 7.4.7-4 [731 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.16.0-1 [5696 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.16.0-1 [114 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 242 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 247 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.2.3-3 [112 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.4.7-4 [588 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libpmix-dev amd64 5.0.4-1 [3972 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.6-3 [188 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.6-3 [1088 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.17 [3148 B] Get: 259 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83-dev amd64 1.83.0-3.2+b2 [290 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 261 http://deb.debian.org/debian unstable/main amd64 libboost-python1.83.0 amd64 1.83.0-3.2+b2 [320 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.17 [2372 B] Get: 263 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-python1.83.0 amd64 1.83.0-3.2+b2 [358 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-python1.83-dev amd64 1.83.0-3.2+b2 [237 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-python-dev amd64 1.83.0.2+b2 [3712 B] Get: 266 http://deb.debian.org/debian unstable/main amd64 libboost-nowide1.83.0 amd64 1.83.0-3.2+b2 [234 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libboost-nowide1.83-dev amd64 1.83.0-3.2+b2 [236 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libboost-nowide-dev amd64 1.83.0.2+b2 [3668 B] Get: 269 http://deb.debian.org/debian unstable/main amd64 libboost-numpy1.83.0 amd64 1.83.0-3.2+b2 [242 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 libboost-numpy1.83-dev amd64 1.83.0-3.2+b2 [246 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 libboost-numpy-dev amd64 1.83.0.2+b2 [3644 B] Get: 272 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.2+b2 [347 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3.2+b2 [376 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 275 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.8-1 [2151 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.8-1 [5136 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.7-1 [9976 B] Get: 279 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.8-1 [505 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.7-1 [26.1 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 libboost-python1.83-dev amd64 1.83.0-3.2+b2 [328 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 libboost-python-dev amd64 1.83.0.2+b2 [3892 B] Get: 283 http://deb.debian.org/debian unstable/main amd64 libboost-random1.83.0 amd64 1.83.0-3.2+b2 [238 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 libboost-random1.83-dev amd64 1.83.0-3.2+b2 [241 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 libboost-random-dev amd64 1.83.0.2+b2 [3592 B] Get: 286 http://deb.debian.org/debian unstable/main amd64 libboost-regex-dev amd64 1.83.0.2+b2 [3864 B] Get: 287 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 288 http://deb.debian.org/debian unstable/main amd64 libboost-stacktrace1.83.0 amd64 1.83.0-3.2+b2 [283 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 libboost-stacktrace1.83-dev amd64 1.83.0-3.2+b2 [245 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libboost-stacktrace-dev amd64 1.83.0.2+b2 [3592 B] Get: 291 http://deb.debian.org/debian unstable/main amd64 libboost-system-dev amd64 1.83.0.2+b2 [3736 B] Get: 292 http://deb.debian.org/debian unstable/main amd64 libboost-test-dev amd64 1.83.0.2+b2 [3628 B] Get: 293 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 294 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83.0 amd64 1.83.0-3.2+b2 [235 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83-dev amd64 1.83.0-3.2+b2 [237 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 297 http://deb.debian.org/debian unstable/main amd64 libboost1.83-tools-dev amd64 1.83.0-3.2+b2 [1529 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 libboost-tools-dev amd64 1.83.0.2+b2 [3768 B] Get: 299 http://deb.debian.org/debian unstable/main amd64 libboost-type-erasure1.83.0 amd64 1.83.0-3.2+b2 [245 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 libboost-type-erasure1.83-dev amd64 1.83.0-3.2+b2 [249 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 libboost-type-erasure-dev amd64 1.83.0.2+b2 [3688 B] Get: 302 http://deb.debian.org/debian unstable/main amd64 libboost-url1.83.0 amd64 1.83.0-3.2+b2 [336 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 libboost-url1.83-dev amd64 1.83.0-3.2+b2 [422 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 libboost-url-dev amd64 1.83.0.2+b2 [3732 B] Get: 305 http://deb.debian.org/debian unstable/main amd64 libboost-wave1.83.0 amd64 1.83.0-3.2+b2 [437 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 libboost-wave1.83-dev amd64 1.83.0-3.2+b2 [486 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 libboost-wave-dev amd64 1.83.0.2+b2 [3624 B] Get: 308 http://deb.debian.org/debian unstable/main amd64 libboost-all-dev amd64 1.83.0.2+b2 [3936 B] Get: 309 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.10-2 [251 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 libdouble-conversion3 amd64 3.3.0-1+b2 [41.8 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 libwayland-server0 amd64 1.23.0-1+b1 [34.2 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 libglapi-mesa amd64 24.2.8-1 [38.0 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.5-1 [26.0 MB] Get: 320 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 libxcb-dri2-0 amd64 1.17.0-2+b1 [107 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 327 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b2 [8848 B] Get: 329 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 24.2.8-1 [9185 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 24.2.8-1 [42.8 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.23.0-1+b1 [26.6 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 libegl-mesa0 amd64 24.2.8-1 [133 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b2 [20.3 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b3 [19.3 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.3.296.0-1 [126 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 24.2.8-1 [43.9 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 24.2.8-1 [154 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 347 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 libglx-dev amd64 1.7.0-1+b2 [15.8 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 libgl-dev amd64 1.7.0-1+b2 [101 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 libegl-dev amd64 1.7.0-1+b2 [19.5 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 358 http://deb.debian.org/debian unstable/main amd64 libevdev2 amd64 1.13.3+dfsg-1 [32.2 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get: 367 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b2 [185 kB] Get: 369 http://deb.debian.org/debian unstable/main amd64 libopengl-dev amd64 1.7.0-1+b2 [5388 B] Get: 370 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b2 [223 kB] Get: 371 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 372 http://deb.debian.org/debian unstable/main amd64 libgudev-1.0-0 amd64 238-5+b1 [14.8 kB] Get: 373 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 374 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 375 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 376 http://deb.debian.org/debian unstable/main amd64 libwacom-common all 2.13.0-1 [98.0 kB] Get: 377 http://deb.debian.org/debian unstable/main amd64 libwacom9 amd64 2.13.0-1 [24.0 kB] Get: 378 http://deb.debian.org/debian unstable/main amd64 libinput-bin amd64 1.26.2-1 [25.3 kB] Get: 379 http://deb.debian.org/debian unstable/main amd64 libmtdev1t64 amd64 1.1.6-1.2+b1 [22.5 kB] Get: 380 http://deb.debian.org/debian unstable/main amd64 libinput10 amd64 1.26.2-1 [131 kB] Get: 381 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 382 http://deb.debian.org/debian unstable/main amd64 libjbig-dev amd64 2.1-6.1+b2 [31.4 kB] Get: 383 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 384 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 385 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 386 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 387 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 388 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 389 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 390 http://deb.debian.org/debian unstable/main amd64 liblerc-dev amd64 4.0.0+ds-5 [183 kB] Get: 391 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 392 http://deb.debian.org/debian unstable/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB] Get: 393 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 394 http://deb.debian.org/debian unstable/main amd64 libopenmm8.1 amd64 8.1.2+dfsg-1+b1 [1058 kB] Get: 395 http://deb.debian.org/debian unstable/main amd64 libopenmm-dev amd64 8.1.2+dfsg-1+b1 [346 kB] Get: 396 http://deb.debian.org/debian unstable/main amd64 libopenmm-plugins amd64 8.1.2+dfsg-1+b1 [1457 kB] Get: 397 http://deb.debian.org/debian unstable/main amd64 libparasail8 amd64 2.6.2+dfsg-2 [1890 kB] Get: 398 http://deb.debian.org/debian unstable/main amd64 libparasail-dev amd64 2.6.2+dfsg-2 [1504 kB] Get: 399 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.44-4 [261 kB] Get: 400 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.44-2 [366 kB] Get: 401 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 402 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b1 [759 kB] Get: 403 http://deb.debian.org/debian unstable/main amd64 libqt5core5t64 amd64 5.15.15+dfsg-2 [1866 kB] Get: 404 http://deb.debian.org/debian unstable/main amd64 libqt5concurrent5t64 amd64 5.15.15+dfsg-2 [44.6 kB] Get: 405 http://deb.debian.org/debian unstable/main amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-2 [217 kB] Get: 406 http://deb.debian.org/debian unstable/main amd64 libqt5network5t64 amd64 5.15.15+dfsg-2 [682 kB] Get: 407 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 408 http://deb.debian.org/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB] Get: 409 http://deb.debian.org/debian unstable/main amd64 libxcb-util1 amd64 0.4.0-1+b2 [22.5 kB] Get: 410 http://deb.debian.org/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b2 [22.2 kB] Get: 411 http://deb.debian.org/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b3 [15.7 kB] Get: 412 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 413 http://deb.debian.org/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b2 [17.4 kB] Get: 414 http://deb.debian.org/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get: 415 http://deb.debian.org/debian unstable/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b1 [105 kB] Get: 416 http://deb.debian.org/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2+b1 [130 kB] Get: 417 http://deb.debian.org/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2+b1 [130 kB] Get: 418 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.42-1 [790 kB] Get: 419 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.7.0-1 [113 kB] Get: 420 http://deb.debian.org/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.7.0-1 [16.1 kB] Get: 421 http://deb.debian.org/debian unstable/main amd64 libqt5gui5t64 amd64 5.15.15+dfsg-2 [3498 kB] Get: 422 http://deb.debian.org/debian unstable/main amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-2 [2400 kB] Get: 423 http://deb.debian.org/debian unstable/main amd64 libqt5xml5t64 amd64 5.15.15+dfsg-2 [126 kB] Get: 424 http://deb.debian.org/debian unstable/main amd64 libqt5designer5 amd64 5.15.15-3 [2762 kB] Get: 425 http://deb.debian.org/debian unstable/main amd64 libqt5sql5t64 amd64 5.15.15+dfsg-2 [125 kB] Get: 426 http://deb.debian.org/debian unstable/main amd64 libqt5help5 amd64 5.15.15-3 [151 kB] Get: 427 http://deb.debian.org/debian unstable/main amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-2 [150 kB] Get: 428 http://deb.debian.org/debian unstable/main amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-2 [206 kB] Get: 429 http://deb.debian.org/debian unstable/main amd64 libqt5test5t64 amd64 5.15.15+dfsg-2 [151 kB] Get: 430 http://deb.debian.org/debian unstable/main amd64 libvulkan-dev amd64 1.3.296.0-1 [1397 kB] Get: 431 http://deb.debian.org/debian unstable/main amd64 libxext-dev amd64 2:1.3.4-1+b2 [104 kB] Get: 432 http://deb.debian.org/debian unstable/main amd64 qt5-qmake-bin amd64 5.15.15+dfsg-2 [1066 kB] Get: 433 http://deb.debian.org/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get: 434 http://deb.debian.org/debian unstable/main amd64 qt5-qmake amd64 5.15.15+dfsg-2 [224 kB] Get: 435 http://deb.debian.org/debian unstable/main amd64 qtbase5-dev-tools amd64 5.15.15+dfsg-2 [777 kB] Get: 436 http://deb.debian.org/debian unstable/main amd64 qtbase5-dev amd64 5.15.15+dfsg-2 [1122 kB] Get: 437 http://deb.debian.org/debian unstable/main amd64 libqt5opengl5-dev amd64 5.15.15+dfsg-2 [51.5 kB] Get: 438 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 439 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 440 http://deb.debian.org/debian unstable/main amd64 libsharpyuv-dev amd64 1.4.0-0.1+b1 [117 kB] Get: 441 http://deb.debian.org/debian unstable/main amd64 libsqlite3-dev amd64 3.46.1-1 [1107 kB] Get: 442 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 443 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 444 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 445 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 446 http://deb.debian.org/debian unstable/main amd64 libwebpdecoder3 amd64 1.4.0-0.1+b1 [204 kB] Get: 447 http://deb.debian.org/debian unstable/main amd64 libwebp-dev amd64 1.4.0-0.1+b1 [442 kB] Get: 448 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 449 http://deb.debian.org/debian unstable/main amd64 libtiffxx6 amd64 4.5.1+git230720-5 [149 kB] Get: 450 http://deb.debian.org/debian unstable/main amd64 libtiff-dev amd64 4.5.1+git230720-5 [463 kB] Get: 451 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 452 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 453 http://deb.debian.org/debian unstable/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 454 http://deb.debian.org/debian unstable/main amd64 python3-attr all 24.2.0-1 [68.4 kB] Get: 455 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b6 [321 kB] Get: 456 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 457 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-1 [264 kB] Get: 458 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 459 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 460 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 461 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 462 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-5 [95.1 kB] Get: 463 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get: 464 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.0+dfsg-1 [25.5 kB] Get: 465 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.14.1-3 [20.5 MB] Get: 466 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 467 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get: 468 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 469 http://deb.debian.org/debian unstable/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b3 [299 kB] Get: 470 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 471 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.55.0-3 [1634 kB] Get: 472 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-2+b1 [77.0 kB] Get: 473 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 474 http://deb.debian.org/debian unstable/main amd64 python3.12-tk amd64 3.12.8-1 [113 kB] Get: 475 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.1-1 [103 kB] Get: 476 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.12.7-1 [9444 B] Get: 477 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 10.4.0-1+b1 [79.8 kB] Get: 478 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 479 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.8.3-3+b1 [5654 kB] Get: 480 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5.sip amd64 12.15.0-1+b1 [66.2 kB] Get: 481 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5 amd64 5.15.11+dfsg-1+b1 [2521 kB] Get: 482 http://deb.debian.org/debian unstable/main amd64 voronota amd64 1.22.3149-2 [2057 kB] Fetched 344 MB in 57s (6018 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-1_amd64.deb ... Unpacking python3.12-minimal (3.12.8-1) ... Setting up libpython3.12-minimal:amd64 (3.12.8-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20288 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-1_amd64.deb ... Unpacking python3.12 (3.12.8-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up libhwloc15:amd64 (2.11.2-1) ... Setting up libboost-stacktrace1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up libboost-numpy1.83-dev (1.83.0-3.2+b2) ... Setting up icu-devtools (72.1-5+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libsensors5:amd64 (1:3.6.0-10+b1) ... Setting up liblerc-dev:amd64 (4.0.0+ds-5) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libltdl7:amd64 (2.4.7-8) ... Setting up libfftw3-double3:amd64 (3.3.10-2+b1) ... Setting up libcifpp-data (7.0.7-3) ... Setting up libglapi-mesa:amd64 (24.2.8-1) ... Setting up libboost-test1.83.0:amd64 (1.83.0-3.2+b2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up libboost-fiber1.83.0:amd64 (1.83.0-3.2+b2) ... Setting up libvulkan1:amd64 (1.3.296.0-1) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up liblzma-dev:amd64 (5.6.3-1+b1) ... Setting up libxcb-dri2-0:amd64 (1.17.0-2+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libboost-atomic-dev:amd64 (1.83.0.2+b2) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up libmtdev1t64:amd64 (1.1.6-1.2+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Setting up libxshmfence1:amd64 (1.3-1+b2) ... Setting up libboost-exception1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ... Setting up libboost-stacktrace-dev:amd64 (1.83.0.2+b2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libjson-perl (4.10000-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libboost-graph1.83.0:amd64 (1.83.0-3.2+b2) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.6-3) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libmd4c0:amd64 (0.5.2-2+b1) ... Setting up libboost-container1.83.0:amd64 (1.83.0-3.2+b2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b4) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libboost-type-erasure1.83.0:amd64 (1.83.0-3.2+b2) ... Setting up cmake-data (3.31.1-1) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1+b2) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libboost-math1.83.0:amd64 (1.83.0-3.2+b2) ... Setting up libopengl-dev:amd64 (1.7.0-1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up libsharpyuv-dev:amd64 (1.4.0-0.1+b1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.3.2-2) ... Setting up libwebpmux3:amd64 (1.4.0-0.1+b1) ... Setting up libtiffxx6:amd64 (4.5.1+git230720-5) ... Setting up libdeflate-dev:amd64 (1.22-1) ... Setting up libopenmm8.1 (8.1.2+dfsg-1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libevdev2:amd64 (1.13.3+dfsg-1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:amd64 (72.1-5+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libboost1.83-tools-dev (1.83.0-3.2+b2) ... Setting up libgudev-1.0-0:amd64 (238-5+b1) ... Setting up qtchooser (66-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libwacom-common (2.13.0-1) ... Setting up libxkbcommon0:amd64 (1.7.0-1) ... Setting up libwayland-client0:amd64 (1.23.0-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-8) ... Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.5-1) ... Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libboost-wave1.83.0:amd64 (1.83.0-3.2+b2) ... Setting up gettext (0.22.5-2) ... Setting up libboost-coroutine1.83.0:amd64 (1.83.0-3.2+b2) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up qt5-qmake:amd64 (5.15.15+dfsg-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libtool (2.4.7-8) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up libwacom9:amd64 (2.13.0-1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-log1.83.0 (1.83.0-3.2+b2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-system-dev:amd64 (1.83.0.2+b2) ... Setting up libpng-dev:amd64 (1.6.44-2) ... Setting up libavahi-common3:amd64 (0.8-15) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libjbig-dev:amd64 (2.1-6.1+b2) ... Setting up libboost-locale1.83.0:amd64 (1.83.0-3.2+b2) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libboost-test1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libboost-url1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libboost-tools-dev (1.83.0.2+b2) ... Setting up libcifpp7:amd64 (7.0.7-3) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libboost-exception-dev:amd64 (1.83.0.2+b2) ... Setting up dssp (4.4.10-1) ... Setting up libboost-nowide-dev (1.83.0.2+b2) ... Setting up libopenmm-dev (8.1.2+dfsg-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Setting up libinput-bin (1.26.2-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1+b1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b1) ... Setting up libboost-test-dev:amd64 (1.83.0.2+b2) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-8) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libwebp-dev:amd64 (1.4.0-0.1+b1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libllvm17t64:amd64 (1:17.0.6-18) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libtiff-dev:amd64 (4.5.1+git230720-5) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b2) ... Setting up libboost-container1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up shared-mime-info (2.4-5+b1) ... Setting up libboost-numpy-dev (1.83.0.2+b2) ... Setting up libxkbcommon-x11-0:amd64 (1.7.0-1) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libboost-random1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-date-time-dev:amd64 (1.83.0.2+b2) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libopenmm-plugins (8.1.2+dfsg-1+b1) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up groff-base (1.23.0-6) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libboost-url-dev:amd64 (1.83.0.2+b2) ... Setting up libhwloc-dev:amd64 (2.11.2-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libboost-regex-dev:amd64 (1.83.0.2+b2) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libavahi-client3:amd64 (0.8-15) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libinput10:amd64 (1.26.2-1) ... Setting up libibverbs1:amd64 (52.0-2+b1) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libboost-json1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libboost-wave1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libboost-locale1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up ibverbs-providers:amd64 (52.0-2+b1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up openssh-client (1:9.9p1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libdrm-intel1:amd64 (2.4.123-1) ... Setting up python3.12-tk (3.12.8-1) ... Setting up libboost-type-erasure1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libx11-dev:amd64 (2:1.8.10-2) ... Setting up libboost-random-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-locale-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-wave-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-graph1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up python3.13-tk (3.13.1-1) ... Setting up libboost-container-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-type-erasure-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-context1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libboost-coroutine1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libqt5core5t64:amd64 (5.15.15+dfsg-2) ... Setting up libboost-fiber1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up sphinx-common (7.4.7-4) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up libpmix2t64:amd64 (5.0.4-1) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libqt5sql5t64:amd64 (5.15.15+dfsg-2) ... Setting up cmake (3.31.1-1) ... Setting up librdmacm1t64:amd64 (52.0-2+b1) ... Setting up libboost-coroutine-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-log1.83-dev (1.83.0-3.2+b2) ... Setting up libboost-json-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-log-dev (1.83.0.2+b2) ... Setting up libcups2t64:amd64 (2.4.10-2) ... Setting up libhsakmt1:amd64 (6.1.2+ds-1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-fiber-dev:amd64 (1.83.0.2+b2) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up libboost-graph-dev:amd64 (1.83.0.2+b2) ... Setting up mesa-libgallium:amd64 (24.2.8-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-1) ... Setting up libgbm1:amd64 (24.2.8-1) ... Setting up libqt5concurrent5t64:amd64 (5.15.15+dfsg-2) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.8-1) ... Setting up libgl1-mesa-dri:amd64 (24.2.8-1) ... Setting up libqt5network5t64:amd64 (5.15.15+dfsg-2) ... Setting up libqt5xml5t64:amd64 (5.15.15+dfsg-2) ... Setting up debhelper (13.20) ... Setting up libboost-context-dev:amd64 (1.83.0.2+b2) ... Setting up libqt5test5t64:amd64 (5.15.15+dfsg-2) ... Setting up libibverbs-dev:amd64 (52.0-2+b1) ... Setting up libpython3.12t64:amd64 (3.12.8-1) ... Setting up qtbase5-dev-tools (5.15.15+dfsg-2) ... Setting up libegl-mesa0:amd64 (24.2.8-1) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-2) ... Setting up libegl1:amd64 (1.7.0-1+b2) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up libglx-mesa0:amd64 (24.2.8-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:amd64 (3.12.8-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.2-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.8-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.2.3-3) ... Setting up python3-pyqt5.sip (12.15.0-1+b1) ... Setting up python3-lxml:amd64 (5.3.0-1+b1) ... Setting up libglx-dev:amd64 (1.7.0-1+b2) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up libgl-dev:amd64 (1.7.0-1+b2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up libvulkan-dev:amd64 (1.3.296.0-1) ... Setting up libpython3-dev:amd64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libegl-dev:amd64 (1.7.0-1+b2) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b3) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tk:amd64 (3.12.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-2) ... Setting up python3-pil.imagetk:amd64 (10.4.0-1+b1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up libboost-python1.83-dev (1.83.0-3.2+b2) ... Setting up libglu1-mesa-dev:amd64 (9.0.2-1.1+b2) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up libopenmpi40:amd64 (5.0.6-3) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-2) ... Setting up libqt5help5:amd64 (5.15.15-3) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up python3-fs (2.4.16-5) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-contourpy (1.3.1-1) ... Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-2) ... Setting up libboost-mpi1.83.0 (1.83.0-3.2+b2) ... Setting up openmpi-bin (5.0.6-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-2) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.14.1-3) ... Setting up libboost-graph-parallel1.83.0 (1.83.0-3.2+b2) ... Setting up libqt5designer5:amd64 (5.15.15-3) ... Setting up mpi-default-bin (1.17) ... Setting up qtbase5-dev:amd64 (5.15.15+dfsg-2) ... Setting up libboost-graph-parallel1.83-dev (1.83.0-3.2+b2) ... Setting up python3-pyqt5 (5.15.11+dfsg-1+b1) ... Setting up libboost-mpi-python1.83.0 (1.83.0-3.2+b2) ... Setting up libqt5opengl5-dev:amd64 (5.15.15+dfsg-2) ... Setting up libboost-graph-parallel-dev (1.83.0.2+b2) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Setting up libpmix-dev:amd64 (5.0.4-1) ... Setting up libopenmpi-dev:amd64 (5.0.6-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.17) ... Setting up libboost-mpi1.83-dev (1.83.0-3.2+b2) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libboost-mpi-python1.83-dev (1.83.0-3.2+b2) ... Setting up libboost-mpi-python-dev (1.83.0.2+b2) ... Setting up libboost-all-dev (1.83.0.2+b2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1423805/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1423805/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/openstructure-2.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../openstructure_2.9.0-2_source.changes dpkg-buildpackage: info: source package openstructure dpkg-buildpackage: info: source version 2.9.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/openstructure-2.9.0' dh_auto_configure -- -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/x86_64-linux-gnu/openmm/plugins -DENABLE_PARASAIL=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/x86_64-linux-gnu/openmm/plugins -DENABLE_PARASAIL=ON .. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done CMake Warning (dev) at cmake_support/OST.cmake:892 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): cmake_support/OST.cmake:921 (get_compiler_version) CMakeLists.txt:173 (setup_compiler_flags) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Python: /usr/bin/python3 (found suitable version "3.12.8", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed CMake Warning (dev) at cmake_support/OST.cmake:955 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:190 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost package: python312 CMake Warning (dev) at cmake_support/OST.cmake:969 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:190 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: unit_test_framework CMake Warning (dev) at cmake_support/OST.cmake:976 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:190 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: filesystem system CMake Warning (dev) at cmake_support/OST.cmake:980 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:190 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: iostreams CMake Warning (dev) at cmake_support/OST.cmake:983 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:190 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: program_options CMake Warning (dev) at cmake_support/OST.cmake:986 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:190 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: regex CMake Warning (dev) at cmake_support/OST.cmake:989 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:190 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: thread -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so -- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0") -- Found SQLITE3: /usr/lib/x86_64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.44") -- Found FFTW: /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Found TIFF: /usr/lib/x86_64-linux-gnu/libtiff.so (found version "4.5.1") -- Found OpenMM: /usr/lib/x86_64-linux-gnu/libOpenMM.so -- Searching for python module PyQt5 for /usr/bin/python3 -- Found python module PyQt5 -- Searching for python module PyQt5.sip for /usr/bin/python3 -- Found python module PyQt5.sip CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/base/src/CMakeLists.txt:43 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:432 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/base/pymod/CMakeLists.txt:33 (script) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:435 (copy_if_different) modules/base/pymod/CMakeLists.txt:33 (script) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/bindings/src/CMakeLists.txt:13 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/bindings/src/CMakeLists.txt:13 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/bindings/pymod/CMakeLists.txt:27 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) modules/config/CMakeLists.txt:65 (stage_and_install_headers) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) modules/config/CMakeLists.txt:65 (stage_and_install_headers) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) modules/config/CMakeLists.txt:65 (stage_and_install_headers) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) modules/config/CMakeLists.txt:65 (stage_and_install_headers) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/config/CMakeLists.txt:65 (stage_and_install_headers) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/conop/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/conop/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/conop/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/conop/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/conop/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/conop/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/conop/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/conop/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/conop/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/conop/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/db/src/CMakeLists.txt:17 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/db/src/CMakeLists.txt:17 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/db/src/CMakeLists.txt:17 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/db/src/CMakeLists.txt:17 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/db/src/CMakeLists.txt:17 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/db/src/CMakeLists.txt:17 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/db/src/CMakeLists.txt:17 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/db/pymod/CMakeLists.txt:6 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/db/pymod/CMakeLists.txt:6 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/db/pymod/CMakeLists.txt:6 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/db/pymod/CMakeLists.txt:6 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/db/pymod/CMakeLists.txt:6 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/db/pymod/CMakeLists.txt:6 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/geom/src/CMakeLists.txt:55 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/geom/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/geom/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/geom/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/geom/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/geom/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/geom/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gfx/src/CMakeLists.txt:193 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gfx/src/CMakeLists.txt:244 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gfx/src/CMakeLists.txt:244 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gfx/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gfx/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gfx/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gfx/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gfx/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gfx/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gfx/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gfx/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gfx/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gfx/pymod/CMakeLists.txt:27 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/gui/src/CMakeLists.txt:443 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:26 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/share/CMakeLists.txt:31 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:93 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:101 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:111 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:111 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:111 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/gui/pymod/CMakeLists.txt:111 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/base/src/CMakeLists.txt:102 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/img/base/pymod/CMakeLists.txt:19 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/img/base/pymod/CMakeLists.txt:19 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/img/base/pymod/CMakeLists.txt:19 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/img/base/pymod/CMakeLists.txt:19 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/img/base/pymod/CMakeLists.txt:19 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/img/base/pymod/CMakeLists.txt:19 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/img/alg/src/CMakeLists.txt:95 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/img/alg/pymod/CMakeLists.txt:10 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/img/alg/pymod/CMakeLists.txt:10 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/img/alg/pymod/CMakeLists.txt:10 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/img/alg/pymod/CMakeLists.txt:10 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/img/alg/pymod/CMakeLists.txt:10 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/img/alg/pymod/CMakeLists.txt:10 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/info/src/CMakeLists.txt:32 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/info/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/info/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/info/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/info/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/info/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/info/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/io/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/io/pymod/CMakeLists.txt:17 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/base/src/CMakeLists.txt:108 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/base/pymod/CMakeLists.txt:26 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/base/pymod/CMakeLists.txt:26 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/base/pymod/CMakeLists.txt:26 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/base/pymod/CMakeLists.txt:26 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/base/pymod/CMakeLists.txt:26 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/base/pymod/CMakeLists.txt:26 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/alg/src/CMakeLists.txt:65 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/alg/src/CMakeLists.txt:71 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/alg/src/CMakeLists.txt:76 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/alg/pymod/CMakeLists.txt:42 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/alg/pymod/CMakeLists.txt:46 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/mol/mm/src/CMakeLists.txt:47 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/mm/src/CMakeLists.txt:55 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/mm/src/CMakeLists.txt:60 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/mm/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/mm/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/mm/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/mol/mm/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/mm/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/mm/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/mm/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/mol/mm/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/mol/mm/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/base/src/CMakeLists.txt:40 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/seq/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/seq/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/seq/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/seq/base/pymod/CMakeLists.txt:8 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:289 (copy_if_different) cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:291 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:267 (stage_and_install_headers) modules/seq/alg/src/CMakeLists.txt:49 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:584 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:608 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:613 (copy_if_different) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:493 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:616 (compile_py_files) modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:617 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/seq/alg/pymod/CMakeLists.txt:5 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/seq/alg/pymod/CMakeLists.txt:10 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/seq/alg/pymod/CMakeLists.txt:14 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/seq/alg/pymod/CMakeLists.txt:18 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:435 (copy_if_different) scripts/CMakeLists.txt:23 (script) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:435 (copy_if_different) scripts/CMakeLists.txt:25 (script) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:435 (copy_if_different) scripts/CMakeLists.txt:28 (script) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:432 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): scripts/CMakeLists.txt:33 (script) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:435 (copy_if_different) scripts/CMakeLists.txt:33 (script) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): scripts/CMakeLists.txt:42 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at scripts/CMakeLists.txt:45 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:1016 (copy_if_different) actions/CMakeLists.txt:4 (ost_action) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:1016 (copy_if_different) actions/CMakeLists.txt:5 (ost_action) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/OST.cmake:124 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/OST.cmake:1016 (copy_if_different) actions/CMakeLists.txt:6 (ost_action) This warning is for project developers. Use -Wno-dev to suppress it. -- OpenStructure will be built with the following options: Install Prefix (-DPREFIX) : /usr RPath in install (-DUSE_RPATH) : OFF Info support (-DENABLE_INFO) : ON Graphical interface (-DENABLE_GUI) : ON OpenGL support (-DENABLE_GFX) : ON Shader support (-DUSE_SHADER) : OFF SpaceNav Device support (-DENABLE_SPNAV) : OFF OpenMM support (-DENABLE_MM) : ON OpenMM plugins (-DOPEN_MM_PLUGIN_DIR) : /usr/lib/x86_64-linux-gnu/openmm/plugins Parasail alignment library (-DENABLE_PARASAIL) : ON Optimize (-DOPTIMIZE) : ON Profiling support (-DPROFILE) : OFF Double Precision (-DUSE_DOUBLE_PRECISION) : OFF Compound Lib (-DCOMPOUND_LIB) : NONE TMAlign and TMScore (-DCOMPILE_TMTOOLS) : OFF Static Libraries (-DENABLE_STATIC) : OFF Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF -- Configuring done (33.8s) -- Generating done (9.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/openstructure-2.9.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openstructure-2.9.0 -B/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color=" make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make -f 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/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake "--color=" make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod 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/build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/share /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/share 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'/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/db/./__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu 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/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/bin make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 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'/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/geom/./__init__.py make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_db_pymod make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gfx/./__init__.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./lga.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./lga.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./__init__.py make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/add_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake "--color=" make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/termuse.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/termuse.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/./cleanup.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/conop/./cleanup.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/images/logo-small.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/close_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/superpositiondialog.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/superpositiondialog.py make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/info/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/__init__.py make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/img/alg/./__init__.py make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./hbplus.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./hbplus.py make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/./init_context_menu.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./init_context_menu.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake "--color=" make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/DependInfo.cmake "--color=" make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_geom_pymod make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake "--color=" make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/./py_gfx_obj.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gfx/./py_gfx_obj.py make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/info/./__init__.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/img/./__init__.py [ 0%] Built target subst___init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/critical_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/alg/./__init__.py make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/init.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/init.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/color_options_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/color_options_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/io/./__init__.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/./init_menubar.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./init_menubar.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target gui_images make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/delete_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/./__init__.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/./mat.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/alg/./mat.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./msms.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./msms.py make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_conop_pymod cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./__init__.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/./__init__.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/mm/./__init__.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/menu.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/menu.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/color_select_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/color_select_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/pymod/./remote.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/io/./remote.py [ 0%] Built target ost_gfx_pymod make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./views.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./views.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color=" make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/./init_spacenav.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./init_spacenav.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend [ 0%] Built target ost_img_alg_pymod cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_mol_pymod make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/actions /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/actions /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/./antechamber.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/mm/./antechamber.py make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.12.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.12/dist-packages/ -P /build/reproducible-path/openstructure-2.9.0/cmake_support/substitute.cmake cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/combo_options_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/combo_options_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/distance_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/pymod/./repository.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/io/./repository.py make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./tmtools.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./tmtools.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_info_pymod make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.12.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.12/dist-packages/ -P /build/reproducible-path/openstructure-2.9.0/cmake_support/substitute.cmake make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/./renumber.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/alg/./renumber.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/actions/ost-compare-ligand-structures /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-ligand-structures make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake "--color=" [ 0%] Built target ost_img_pymod [ 0%] Built target create_stage make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/./init_splash.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./init_splash.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./superpose.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./superpose.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.12.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.12/dist-packages/ -P /build/reproducible-path/openstructure-2.9.0/cmake_support/substitute.cmake make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.12.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.12/dist-packages/ -P /build/reproducible-path/openstructure-2.9.0/cmake_support/substitute.cmake make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./dssp.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./dssp.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/geom/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color=" [ 0%] Built target ost_gui_dng_pymod make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/./aaindex.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/alg/./aaindex.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/cpk_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/cpk_widget.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/find_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./qsscoring.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./qsscoring.py [ 0%] Built target ost_seq_pymod [ 0%] Built target ost_mol_mm_pymod make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color=" [ 0%] Built target subst_ost_config make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/actions/ost-compare-structures /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./trajectory_analysis.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./trajectory_analysis.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/aaindex1 /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex1 make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/config/./base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./base.hh make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/custom_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/custom_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/./settings.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./settings.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend [ 0%] Built target ost_io_pymod cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/info/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/information_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./clustalw.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./clustalw.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/actions/ost-compare-structures-legacy /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures-legacy cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/./trajectory_viewer.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./trajectory_viewer.py make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend [ 0%] Built target subst_ost_startup.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/db/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/./stutil.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./stutil.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./structure_analysis.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./structure_analysis.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/config/./config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./config.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/aaindex2 /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex2 make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/gradient_editor_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/gradient_editor_widget.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./def.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build [ 0%] Built target subst_dng cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/./table.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./table.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./utils.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./utils.py make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/./helpwidget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./helpwidget.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./helix_kinks.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./helix_kinks.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/./table_selector.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./table_selector.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build [ 0%] Built target actions cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./dllexport.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./conop.hh make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/map_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh [ 0%] Built target subst_ost make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./exc.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_error.hh make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/config/./version.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./version.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./naccess.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./naccess.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/gradient_info_handler.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/gradient_info_handler.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/aaindex3 /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex3 make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./hbond.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./hbond.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/./table.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./table.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/menubar_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/./xmlrunner.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./xmlrunner.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./processor.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build [ 0%] Built target ost_bindings_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl.hh [ 0%] Built target ost_seq_alg_pymod make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./anisotropic.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./lddt.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./lddt.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color=" make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/gradient_list_model.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/gradient_list_model.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./hhblits.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./hhblits.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/./gosty_startup.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./gosty_startup.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gfx/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./geom.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/selection_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./hhblits2.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./hhblits2.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./module_config.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/gradient_preset_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/gradient_preset_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/test_utils/compare_files.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./svd_superpose.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_parser.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./diag.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/show_sidebar_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png [ 0%] Built target ost_gui_pymod cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat.hh make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend [ 0%] Built target ost_config_headers make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./hhblits3.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./hhblits3.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./qsscore.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./qsscore.py make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./linear_indexer.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/./testutils.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./testutils.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./generic_property.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/hsc_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/hsc_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./scoring.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./scoring.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_list.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/__init__.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat2.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/site_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./model_check.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./blast.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./blast.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./binary_container.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./integrity_error.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./heuristic.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_group.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./chain_mapping.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./chain_mapping.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh [ 0%] Built target ost_base_pymod cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./cadscore.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./cadscore.py make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat3.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/split_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./forcefield.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/immutable_preset_info_handler.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_item.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/warning_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat4.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./stereochemistry.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./stereochemistry.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./kclust.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./kclust.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./invalid_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/share/icons/refresh.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./ff_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/init_inspector.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/init_inspector.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec2.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./ialign.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./ialign.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./ptr_observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./dockq.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./dockq.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib.hh [ 0%] Built target ost_config cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./buildingblock.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec3.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/inspector_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/inspector_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./mmseqs2.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./mmseqs2.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./contact_score.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./contact_score.py [ 0%] Built target scene_icons cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./log.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_path.hh [ 0%] Built target ost_db_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec4.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./block_modifiers.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/map_level_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/map_level_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./correlate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/./dockq.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./dockq.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_set.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./log_sink.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./ligand_scoring.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./ligand_scoring.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/remote.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/remote.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./gromacs_block_modifiers.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh [ 0%] Built target ost_bindings_pymod cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./ins_del.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./profile.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./heuristic_block_modifiers.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_editor_list_model.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_editor_list_model.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./ligand_scoring_base.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./ligand_scoring_base.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_editor_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_editor_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./interaction.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./ligand_scoring_scrmsd.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./ligand_scoring_scrmsd.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_info_handler.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_info_handler.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/debug_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./dyn_cast.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh [ 0%] Built target ost_conop_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./ligand_scoring_lddtpli.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./ligand_scoring_lddtpli.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./profile_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./settings.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./settings.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_list_model.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_list_model.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fft.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/./bb_lddt.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./bb_lddt.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./simulation.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/stereo_data.json /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/stereo_data.json cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh [ 0%] Built target ost_seq_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./modeller.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint_msc.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/render_mode_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/render_mode_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./constants.hh [ 0%] Built target ost_mol_alg_pymod cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/index.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./range.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/render_op.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/render_op.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./units.hh [ 0%] Built target ost_info_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./state_extractor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/render_options_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/render_options_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/scene_observer_impl.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/scene_observer_impl.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./message.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./system_creator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/scene_selection_helper.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/scene_selection_helper.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./platform.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./topology_creator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/simple_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/simple_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./string_ref.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./circle_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./pod_vector.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/sline_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/sline_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./index.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./index.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./atom_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/toolbar_options_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/toolbar_options_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./fixed_string.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./topology.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./histogram.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/trace_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/trace_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./steep.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./steep.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./biounit.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./tri_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/tube_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/tube_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3_op.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./gdt.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh [ 0%] Built target ost_mol_mm_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/uniform_color_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/uniform_color_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_types.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./paged_array.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chain_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_mol_alg_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/visibility_op.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/visibility_op.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./debug.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./quat.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./dllexport.hh [ 0%] Built target ost_base_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/line_trace_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/line_trace_widget.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_iterator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./transform.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chain_type.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/wireframe_widget.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/wireframe_widget.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chem_class.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_class.hh [ 0%] Built target ost_seq_alg_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chem_type.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/cpk_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/query_editor.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/query_editor.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./in_mem_coord_source.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/simple_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./coord_frame.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/omf.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_factory.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/sline_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh [ 0%] Built target ost_gui_scene_pymod make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh [ 0%] Built target ost_geom_headers make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/geom/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./editor_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_base.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/trace_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/mat3.cc [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./editor_type_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/mat2.cc [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/mat4.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o -MF CMakeFiles/ost_geom.dir/vec3.cc.o.d -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/vec3.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/image_format.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/vecmat2_op.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat3_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/vecmat3_op.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./mol.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o -MF CMakeFiles/ost_geom.dir/composite2.cc.o.d -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/composite2.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat4_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/vecmat4_op.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/quat.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o -MF CMakeFiles/ost_geom.dir/composite3.cc.o.d -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/composite3.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/composite2_op.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_list.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -MF CMakeFiles/ost_geom.dir/composite3_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/composite3_op.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/transform.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/aligned_cuboid.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/completer_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./color.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/tiff_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/tiff_util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./property_id.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/jpk_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./query_error.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_error.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./null_data.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./query_state.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_state.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./observable.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./residue_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./residue_prop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./peak.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./residue_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./phase.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./physical_units.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./spatial_organizer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./surface.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point_list.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/load.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./surface_builder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/save.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_object_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./builder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_prim.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./surface_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_handle.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_source.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./surface_prop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./module_config.hh [ 1%] Built target ost_img_alg_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./progress.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./size.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./input.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/src/point_cloud.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./transfer_connectivity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./swap_util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./query_view_wrapper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_utils.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_exception.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_box.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/event_button.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./selection.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./convert.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./value_util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./vecmat.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./formatted_line.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bounding_box.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transform.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh [ 1%] Built target ost_img_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_include.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh [ 1%] Built target ost_mol_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_info.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_mode.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./material.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_profile.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save_entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_surface.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_str.hh [ 1%] Built target ost_gfx_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./omf.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/info_panel.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/img2qt.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/load.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/save.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/load_map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/image_format.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./image_format.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./admin.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_area.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./perspective.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./scene_selection.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/tiff_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./main_window.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_window.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/jpk_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./jpk_util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh [ 1%] Built target ost_io_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./thin_splitter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget_geom_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget_pool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_pool.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget_registry.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_registry.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget_state_saver.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./file_loader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_loader.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 1%] Built target ost_gui_headers [ 1%] Linking CXX shared library ../../../stage/lib/libost_geom.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_geom.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.9 -o ../../../stage/lib/libost_geom.so.2.9.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9 ../../../stage/lib/libost_geom.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/geom/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o -MF CMakeFiles/ost_base.dir/generic_property.cc.o.d -o CMakeFiles/ost_base.dir/generic_property.cc.o -c 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -MF CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o.d -o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/base/src/boost_filesystem_helper.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB 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/usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o -MF CMakeFiles/ost_info.dir/info_item.cc.o.d -o CMakeFiles/ost_info.dir/info_item.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/info/src/info_item.cc [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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-isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o -MF CMakeFiles/ost_info.dir/info_set.cc.o.d -o CMakeFiles/ost_info.dir/info_set.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/info/src/info_set.cc [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/info/src/info_visitor.cc [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -MF CMakeFiles/ost_info.dir/geom_info_conversion.cc.o.d -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/info/src/geom_info_conversion.cc [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/info/src/info_verbose_visitor.cc [ 6%] Linking CXX shared module ../../../stage/lib/python3.12/dist-packages/ost/geom/_ost_geom.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_geom.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.12/dist-packages/ost/geom/_ost_geom.so CMakeFiles/_ost_geom.dir/export_vec2.cc.o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o CMakeFiles/_ost_geom.dir/export_vec3.cc.o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o CMakeFiles/_ost_geom.dir/export_vec4.cc.o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o CMakeFiles/_ost_geom.dir/export_mat2.cc.o CMakeFiles/_ost_geom.dir/export_mat3.cc.o CMakeFiles/_ost_geom.dir/export_mat4.cc.o CMakeFiles/_ost_geom.dir/export_composite2.cc.o CMakeFiles/_ost_geom.dir/export_composite3.cc.o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o CMakeFiles/_ost_geom.dir/export_quat.cc.o CMakeFiles/_ost_geom.dir/export_transform.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/geom/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/geom/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 6%] Built target _ost_geom make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o -MF CMakeFiles/_ost_base.dir/wrap_base.cc.o.d -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/wrap_base.cc [ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o -MF CMakeFiles/_ost_base.dir/export_logger.cc.o.d -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/export_logger.cc [ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o [ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o -MF CMakeFiles/_ost_base.dir/export_units.cc.o.d -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/export_units.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o -MF CMakeFiles/_ost_base.dir/export_range.cc.o.d -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/base/pymod/export_range.cc [ 6%] Linking CXX shared library ../../../stage/lib/libost_info.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_info.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.9 -o ../../../stage/lib/libost_info.so.2.9.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.0 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_info.so.2.9 ../../../stage/lib/libost_info.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 6%] Built target ost_info make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o -MF CMakeFiles/ost_img.dir/composite_mask.cc.o.d -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/composite_mask.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o -MF CMakeFiles/ost_img.dir/data_observer.cc.o.d -o CMakeFiles/ost_img.dir/data_observer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/data_observer.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK 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modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o -MF CMakeFiles/ost_img.dir/circle_mask.cc.o.d -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/circle_mask.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o -MF CMakeFiles/ost_img.dir/extent.cc.o.d -o CMakeFiles/ost_img.dir/extent.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/extent.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o -MF CMakeFiles/ost_img.dir/data_algorithm.cc.o.d -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/data_algorithm.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o -MF CMakeFiles/ost_mol.dir/chain_handle.cc.o.d -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/chain_handle.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o -MF CMakeFiles/ost_img.dir/extent_iterator.cc.o.d -o 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o -MF CMakeFiles/ost_mol.dir/atom_handle.cc.o.d -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/atom_handle.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o -MF CMakeFiles/ost_img.dir/image_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_factory.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_factory.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o -MF CMakeFiles/ost_mol.dir/atom_base.cc.o.d -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/atom_base.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o -MF CMakeFiles/ost_mol.dir/atom_view.cc.o.d -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/atom_view.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o -MF CMakeFiles/ost_img.dir/data.cc.o.d -o CMakeFiles/ost_img.dir/data.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/data.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o -MF CMakeFiles/ost_img.dir/extent_mask.cc.o.d -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/extent_mask.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o -MF CMakeFiles/ost_mol.dir/chain_base.cc.o.d -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/chain_base.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o -MF CMakeFiles/ost_img.dir/image_handle.cc.o.d -o CMakeFiles/ost_img.dir/image_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_handle.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o -MF CMakeFiles/ost_mol.dir/bond_handle.cc.o.d -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/bond_handle.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o -MF CMakeFiles/ost_img.dir/image_impl.cc.o.d -o CMakeFiles/ost_img.dir/image_impl.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_impl.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o -MF CMakeFiles/ost_img.dir/image_list.cc.o.d -o CMakeFiles/ost_img.dir/image_list.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_list.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o -MF CMakeFiles/ost_img.dir/inverted_mask.cc.o.d -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/inverted_mask.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o -MF CMakeFiles/ost_img.dir/mask_base.cc.o.d -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/mask_base.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o -MF CMakeFiles/ost_img.dir/map.cc.o.d -o CMakeFiles/ost_img.dir/map.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/map.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o -MF CMakeFiles/ost_img.dir/mask_op.cc.o.d -o CMakeFiles/ost_img.dir/mask_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/mask_op.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o -MF CMakeFiles/ost_img.dir/mask.cc.o.d -o CMakeFiles/ost_img.dir/mask.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/mask.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o -MF CMakeFiles/ost_img.dir/observable.cc.o.d -o CMakeFiles/ost_img.dir/observable.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/observable.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o -MF CMakeFiles/ost_mol.dir/chain_view.cc.o.d -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/chain_view.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o -MF CMakeFiles/ost_img.dir/paste_impl.cc.o.d -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/paste_impl.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o -MF CMakeFiles/ost_mol.dir/chain_type.cc.o.d -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/chain_type.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o -MF CMakeFiles/ost_img.dir/peak.cc.o.d -o CMakeFiles/ost_img.dir/peak.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/peak.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o -MF CMakeFiles/ost_mol.dir/coord_frame.cc.o.d -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/coord_frame.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o -MF CMakeFiles/ost_img.dir/phase.cc.o.d -o CMakeFiles/ost_img.dir/phase.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/phase.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o -MF CMakeFiles/ost_mol.dir/coord_group.cc.o.d -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/coord_group.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o -MF CMakeFiles/ost_img.dir/physical_units.cc.o.d -o CMakeFiles/ost_img.dir/physical_units.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/physical_units.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o -MF CMakeFiles/ost_mol.dir/editor_base.cc.o.d -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/editor_base.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o -MF CMakeFiles/ost_img.dir/pixel_sampling.cc.o.d -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/pixel_sampling.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o -MF CMakeFiles/ost_mol.dir/entity_base.cc.o.d -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/entity_base.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o -MF CMakeFiles/ost_img.dir/point_list.cc.o.d -o CMakeFiles/ost_img.dir/point_list.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/point_list.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o -MF CMakeFiles/ost_img.dir/point.cc.o.d -o CMakeFiles/ost_img.dir/point.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/point.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o -MF CMakeFiles/ost_img.dir/polygon_mask.cc.o.d -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/polygon_mask.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o -MF CMakeFiles/ost_img.dir/progress.cc.o.d -o CMakeFiles/ost_img.dir/progress.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/progress.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o -MF CMakeFiles/ost_img.dir/spherical_mask.cc.o.d -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/spherical_mask.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o -MF CMakeFiles/ost_img.dir/size.cc.o.d -o CMakeFiles/ost_img.dir/size.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/size.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o -MF CMakeFiles/ost_img.dir/mask_info_convert.cc.o.d -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/mask_info_convert.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o -MF CMakeFiles/ost_img.dir/image_state/index.cc.o.d -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/index.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_base.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o -MF CMakeFiles/ost_mol.dir/entity_handle.cc.o.d -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/entity_handle.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -MF CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o.d -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/raster_image/raster_image.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o -MF CMakeFiles/ost_mol.dir/entity_observer.cc.o.d -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/entity_observer.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -MF CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o.d -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/entity_property_mapper.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o -MF CMakeFiles/ost_mol.dir/entity_view.cc.o.d -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/entity_view.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o -MF CMakeFiles/ost_mol.dir/entity_visitor.cc.o.d -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/entity_visitor.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o -MF CMakeFiles/ost_mol.dir/ics_editor.cc.o.d -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/ics_editor.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o -MF CMakeFiles/ost_mol.dir/not_connected_error.cc.o.d -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/not_connected_error.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o -MF CMakeFiles/ost_mol.dir/property_id.cc.o.d -o CMakeFiles/ost_mol.dir/property_id.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/property_id.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o -MF CMakeFiles/ost_mol.dir/query.cc.o.d -o CMakeFiles/ost_mol.dir/query.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/query.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o -MF CMakeFiles/ost_mol.dir/query_error.cc.o.d -o CMakeFiles/ost_mol.dir/query_error.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/query_error.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o -MF CMakeFiles/ost_mol.dir/query_state.cc.o.d -o CMakeFiles/ost_mol.dir/query_state.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/query_state.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o -MF CMakeFiles/ost_mol.dir/residue_base.cc.o.d -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/residue_base.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o -MF CMakeFiles/ost_mol.dir/residue_handle.cc.o.d -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/residue_handle.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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/usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o -MF CMakeFiles/ost_mol.dir/surface_builder.cc.o.d -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/surface_builder.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o -MF CMakeFiles/ost_mol.dir/surface_handle.cc.o.d -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/surface_handle.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -MF CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/transfer_connectivity.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o -MF CMakeFiles/ost_mol.dir/torsion_handle.cc.o.d -o CMakeFiles/ost_mol.dir/torsion_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/torsion_handle.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -MF CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o.d -o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/query_view_wrapper.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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/build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/view_op.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 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modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection 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-D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/surface_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/torsion_impl.cc [ 16%] Linking CXX shared library ../../../../stage/lib/libost_img.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_img.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.9 -o ../../../../stage/lib/libost_img.so.2.9.0 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9 ../../../../stage/lib/libost_img.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 16%] Built target ost_img [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/atom_prop.cc make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -MF CMakeFiles/ost_img_alg.dir/anisotropic.cc.o.d -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/anisotropic.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/auto_correlate.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o -MF CMakeFiles/ost_img_alg.dir/convolute.cc.o.d -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/convolute.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/correlate.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/cross_correlate.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o -MF CMakeFiles/ost_img_alg.dir/density_slice.cc.o.d -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/density_slice.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o -MF CMakeFiles/ost_img_alg.dir/dft.cc.o.d -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/dft.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o cd 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/normalizer_factory.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/smooth_mask_image.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS 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modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/alg_mirror.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_shift.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/alg_shift.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -MF CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o.d -o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/discrete_shrink.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -MF CMakeFiles/ost_img_alg.dir/transformation_base.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/transformation_base.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o -MF CMakeFiles/ost_img_alg.dir/transformations.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformations.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/transformations.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -MF CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o.d -o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/fractional_shift.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o -MF CMakeFiles/ost_img_alg.dir/polar.cc.o.d -o CMakeFiles/ost_img_alg.dir/polar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/polar.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -MF CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o.d -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/rscrosscorr.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o -MF CMakeFiles/ost_img_alg.dir/line_average.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/line_average.cc [ 21%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1 [ 21%] Linking CXX shared library ../../../../stage/lib/libost_mol.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat 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cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_img_alg.so.2.9 ../../../../stage/lib/libost_img_alg.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 21%] Built target ost_img_alg /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_mol.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.9 -o ../../../../stage/lib/libost_mol.so.2.9.0 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_mol.so.2.9 ../../../../stage/lib/libost_mol.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 21%] Built target ost_mol make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o cd 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o -MF CMakeFiles/ost_seq.dir/sequence_handle.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/sequence_handle.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_list_impl.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o -MF CMakeFiles/ost_seq.dir/aligned_region.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/aligned_region.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 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CMakeFiles/ost_seq.dir/alignment_handle.cc.o.d -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/alignment_handle.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o -MF CMakeFiles/ost_seq.dir/aligned_column.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/aligned_column.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o -MF CMakeFiles/ost_seq.dir/sequence_op.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/sequence_op.cc [ 22%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o [ 22%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o -MF CMakeFiles/ost_seq.dir/sequence_list.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/sequence_list.cc [ 22%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -MF CMakeFiles/ost_seq.dir/views_from_sequences.cc.o.d -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/views_from_sequences.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_impl.cc [ 22%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o -MF CMakeFiles/ost_seq.dir/profile_handle.cc.o.d -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/profile_handle.cc [ 22%] Linking CXX shared module ../../../stage/lib/python3.12/dist-packages/ost/_ost_base.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_base.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.12/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_base.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/base/pymod/settings.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/base/pymod/stutil.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/base/pymod/table.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/base/pymod/table_selector.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/base/pymod/xmlrunner.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/base/pymod/testutils.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 22%] Built target _ost_base make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/info/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 22%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o -MF CMakeFiles/_ost_info.dir/wrap_info.cc.o.d -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/info/pymod/wrap_info.cc [ 22%] Linking CXX shared library ../../../../stage/lib/libost_seq.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_seq.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.9 -o ../../../../stage/lib/libost_seq.so.2.9.0 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq.so.2.9.0 ../../../../stage/lib/libost_seq.so.2.9 ../../../../stage/lib/libost_seq.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 22%] Built target ost_seq make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake "--color=" make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/db/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 22%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o -MF CMakeFiles/ost_db.dir/extract_data_helper.cc.o.d -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/db/src/extract_data_helper.cc [ 22%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o [ 22%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o -MF CMakeFiles/ost_seq_alg.dir/entropy.cc.o.d -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/entropy.cc [ 22%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -MF CMakeFiles/ost_db.dir/sqlite_wrap.cc.o.d -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/db/src/sqlite_wrap.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -MF CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o.d -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/clip_alignment.cc [ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o [ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o [ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o [ 23%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o [ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o [ 25%] 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o -MF CMakeFiles/ost_db.dir/linear_indexer.cc.o.d -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/db/src/linear_indexer.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -MF CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o.d -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/contact_prediction_score.cc [ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o -MF CMakeFiles/ost_seq_alg.dir/conservation.cc.o.d -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o -MF CMakeFiles/ost_db.dir/binary_container.cc.o.d -o CMakeFiles/ost_db.dir/binary_container.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/db/src/binary_container.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/global_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/global_align.cc cd 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -MF CMakeFiles/ost_seq_alg.dir/ins_del.cc.o.d -o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/ins_del.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/local_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/local_align.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/contact_weight_matrix.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/distance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/distance_map.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/merge_pairwise_alignments.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/sequence_identity.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/pair_subst_weight_matrix.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/semiglobal_align.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/sequence_similarity.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/subst_weight_matrix.cc In file included from /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/param_set.h:7, from /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/TMalign.h:6, from /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:20: /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/basic_fun.h: In function 'void file2chainlist(std::vector >&, const std::string&, const std::string&, const std::string&)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/basic_fun.h:833:11: warning: unused variable 'b' [-Wunused-variable] 833 | int a,b; | ^ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/basic_fun.h: In function 'void file2chainpairlist(std::vector >&, std::vector >&, const std::string&, const std::string&, const std::string&)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/basic_fun.h:897:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 897 | for (i=0;i<2;i++) line_vec[i].clear(); line_vec.clear(); | ^~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/basic_fun.h:897:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 897 | for (i=0;i<2;i++) line_vec[i].clear(); line_vec.clear(); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/basic_fun.h:901:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 901 | for (i=0;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 458 | for (int i=0;i >&, char*, char*, std::vector >, std::vector >, std::vector, std::vector, int, int, int)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/NWalign.h:715:14: warning: statement has no effect [-Wunused-value] 715 | for (i;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 878 | for (i=0;i >&, const std::vector >&, std::string, std::string)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/TMalign.h:1604:38: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'std::map, int>::mapped_type' {aka 'int'} [-Wsign-compare] 1604 | if (atom_site_pos==_atom_site["Cartn_x"]) /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/TMalign.h:1607:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'std::map, int>::mapped_type' {aka 'int'} [-Wsign-compare] 1607 | else if (atom_site_pos==_atom_site["Cartn_y"]) /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/TMalign.h:1610:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'std::map, int>::mapped_type' {aka 'int'} [-Wsign-compare] 1610 | else if (atom_site_pos==_atom_site["Cartn_z"]) /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/TMalign.h:1653:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1653 | for (i=1;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1655 | for (i=1;i >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1716 | for (int p=0;p >&, const std::vector >&, std::string, std::string, int, int, double, int, double, double, double)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/TMalign.h:1855:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1855 | for (i=1;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1857 | for (i=1;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2162 | if (!mm_opt) for (i=1;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2372 | for (i=1;i >, double, double, int, int, bool, bool, bool, int, double)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/TMalign.h:3289:12: warning: variable 'Lnorm_d0' set but not used [-Wunused-but-set-variable] 3289 | double Lnorm_d0; | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/TMalign.h: In function 'int CPalign_main(double**, double**, const char*, const char*, const char*, const char*, double*, double (*)[3], double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, std::string&, std::string&, std::string&, double&, int&, double&, double&, double&, int&, int&, int, int, std::vector >, double, double, int, int, bool, bool, bool, int, double)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/TMalign.h:3467:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3467 | for (i=0;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3572 | for (i=0;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3606 | for (r=0;r >&, double, double, bool, bool, int, bool, int, int, int*, int)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/se.h:52:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 52 | for (int r=0;r::size_type' {aka 'long unsigned int'} [-Wsign-compare] 222 | for (int r=0;r > >, std::string)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:670:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 670 | for (chain_i=0;chain_i >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 673 | for (a=0;a >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 687 | for (a=0;a >&, int, int, int, std::string, int, double**, const std::string&)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:1010:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1010 | for (a=0;a > >&, const std::vector > >&, const std::vector >&, const std::vector >&, const std::vector >&, const std::vector >&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, double**, double**, char*, char*, char*, char*, int, int, std::vector > >&, std::vector > >&, int*, int*, std::vector >&)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:1166:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1166 | for (i=0;i >&, std::vector > >&, std::vector > >&, int*, int*, double**, std::vector > >&, std::vector > >&, int*, int*, double**)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:1593:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1593 | for (i=0;i >, double, double, int, int, bool, bool, bool, int, double)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:2542:12: warning: variable 'Lnorm_d0' set but not used [-Wunused-but-set-variable] 2542 | double Lnorm_d0; | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h: In function 'void MMalign_dimer(double&, const std::vector > >&, const std::vector > >&, const std::vector >&, const std::vector >&, const std::vector >&, const std::vector >&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, double**, double**, char*, char*, char*, char*, int, int, int, int, double**, std::vector > >&, std::vector > >&, int*, int*, std::vector >&, double, bool)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:2694:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2694 | for (c=0;c > >&, std::vector >&, std::vector&, std::vector >&, std::vector&, const std::string&, std::string)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:2993:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2993 | for (c=0;c >&, const std::vector >&, double**, int*)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:3030:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3030 | for (i=0;i::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'std::vector ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)' at /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/conservation.cc:128:27: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/sequence_handle.hh:27, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alignment_handle.hh:28: /usr/include/boost/variant/variant.hpp: In function 'std::vector ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/string:42: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'std::vector ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)' at /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/conservation.cc:128:27: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'std::vector ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'std::vector ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)' at /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/conservation.cc:128:27: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'std::vector ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'std::vector ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)' at /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/conservation.cc:128:27: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'std::vector ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc: In function 'void ost::bindings::parse_chain_list_hacked(const std::vector&, const ost::seq::SequenceList&, const std::vector&, const std::vector >&, std::vector > >&, std::vector >&, std::vector >&, std::vector&, std::vector&, std::vector >&, int, int, std::string, int, std::string, int, int, int&, int&, int, std::vector >&)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:263:24: warning: possibly dangling reference to a temporary [-Wdangling-reference] 263 | const std::string& s = seq[i].GetString(); | ^ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:263:44: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(i).ost::seq::SequenceHandle::GetString()' 263 | const std::string& s = seq[i].GetString(); | ~~~~~~~~~~~~~~~~^~ [ 25%] Linking CXX shared library ../../../stage/lib/libost_db.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_db.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_db.so.2.9 -o ../../../stage/lib/libost_db.so.2.9.0 CMakeFiles/ost_db.dir/sqlite_wrap.cc.o CMakeFiles/ost_db.dir/linear_indexer.cc.o CMakeFiles/ost_db.dir/binary_container.cc.o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_db.so.2.9.0 ../../../stage/lib/libost_db.so.2.9 ../../../stage/lib/libost_db.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 25%] Built target ost_db make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 25%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o -MF CMakeFiles/ost_conop.dir/amino_acids.cc.o.d -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/amino_acids.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o -MF CMakeFiles/ost_conop.dir/processor.cc.o.d -o CMakeFiles/ost_conop.dir/processor.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/processor.cc [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 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-I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o -MF CMakeFiles/ost_conop.dir/conop.cc.o.d -o CMakeFiles/ost_conop.dir/conop.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/conop.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib_base.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/compound_lib_base.cc [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o -MF CMakeFiles/ost_conop.dir/diag.cc.o.d -o CMakeFiles/ost_conop.dir/diag.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/diag.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB 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/build/reproducible-path/openstructure-2.9.0/modules/conop/src/heuristic.cc [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o -MF CMakeFiles/ost_conop.dir/rule_based.cc.o.d -o CMakeFiles/ost_conop.dir/rule_based.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/rule_based.cc [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o [ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o -MF CMakeFiles/ost_conop.dir/ring_finder.cc.o.d -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/ring_finder.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o -MF CMakeFiles/ost_conop.dir/model_check.cc.o.d -o CMakeFiles/ost_conop.dir/model_check.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/model_check.cc [ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o -MF CMakeFiles/ost_conop.dir/compound.cc.o.d -o CMakeFiles/ost_conop.dir/compound.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/compound.cc [ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/compound_lib.cc /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/hmm_pseudo_counts.cc: In static member function 'static ost::seq::alg::ContextProfileDBPtr ost::seq::alg::ContextProfileDB::FromCRF(const String&)': /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/hmm_pseudo_counts.cc:146:56: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 146 | if(boost::iequals(".gz", boost::filesystem::extension(filename))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/hmm_pseudo_counts.cc:4: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/include/c++/14/complex:45, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/base.hh:24, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/module_config.hh:22, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:22, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/conop/src/ring_finder.cc:19: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:372:38: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:30, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26: /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/ios:42: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:372:38: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:372:38: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:372:38: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/NWalign.h: In function 'int extract_aln_from_resi(std::vector >&, char*, char*, std::vector >, std::vector >, std::vector, std::vector, int, int, int)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/NWalign.h:686:21: warning: 'invmap' may be used uninitialized [-Wmaybe-uninitialized] 686 | NWalign_main(seqx, seqy, xlen, ylen, sequence[0],sequence[1], | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 | mol_type, invmap, 0, glocal); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/NWalign.h:676:14: note: 'invmap' was declared here 676 | int *invmap; | ^~~~~~ [ 28%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_seq_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.9 -o ../../../../stage/lib/libost_seq_alg.so.2.9.0 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_seq.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../../stage/lib/libost_seq_alg.so.2.9 ../../../../stage/lib/libost_seq_alg.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 28%] Built target ost_seq_alg /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/NWalign.h: In function 'int extract_aln_from_resi(std::vector >&, char*, char*, std::vector >, std::vector >, int)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/NWalign.h:545:21: warning: 'invmap' may be used uninitialized [-Wmaybe-uninitialized] 545 | NWalign_main(seqx, seqy, xlen, ylen, sequence[0],sequence[1], | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 | mol_type, invmap, 0, glocal); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/NWalign.h:535:14: note: 'invmap' was declared here 535 | int *invmap; | ^~~~~~ [ 28%] Linking CXX shared module ../../../stage/lib/python3.12/dist-packages/ost/info/_ost_info.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_info.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.12/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/info/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 28%] Built target _ost_info make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o -MF CMakeFiles/_ost_img.dir/export_data.cc.o.d -o CMakeFiles/_ost_img.dir/export_data.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_data.cc [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o -MF CMakeFiles/_ost_img.dir/export_extent.cc.o.d -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_extent.cc [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -MF CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o.d -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_data_algorithm.cc [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_atom.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o -MF CMakeFiles/_ost_img.dir/export_phase.cc.o.d -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_phase.cc [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o -MF CMakeFiles/_ost_img.dir/export_image_handle.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_image_handle.cc [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o -MF CMakeFiles/_ost_img.dir/export_peak.cc.o.d -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_peak.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_atom_view.cc [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o -MF CMakeFiles/_ost_img.dir/export_raster_image.cc.o.d -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_raster_image.cc [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_chain_view.cc [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o -MF CMakeFiles/_ost_img.dir/export_point.cc.o.d -o CMakeFiles/_ost_img.dir/export_point.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_point.cc [ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o -MF CMakeFiles/_ost_mol.dir/export_bond.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_bond.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o -MF CMakeFiles/_ost_img.dir/export_size.cc.o.d -o CMakeFiles/_ost_img.dir/export_size.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_size.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_chain.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o -MF CMakeFiles/_ost_img.dir/export_progress.cc.o.d -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_progress.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_group.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_coord_group.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o [ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_coord_frame.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o -MF CMakeFiles/_ost_img.dir/export_mask.cc.o.d -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_mask.cc [ 30%] Linking CXX shared library ../../../stage/lib/libost_conop.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_conop.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_conop.so.2.9 -o ../../../stage/lib/libost_conop.so.2.9.0 CMakeFiles/ost_conop.dir/processor.cc.o CMakeFiles/ost_conop.dir/amino_acids.cc.o CMakeFiles/ost_conop.dir/conop.cc.o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o CMakeFiles/ost_conop.dir/heuristic.cc.o CMakeFiles/ost_conop.dir/diag.cc.o CMakeFiles/ost_conop.dir/rule_based.cc.o CMakeFiles/ost_conop.dir/model_check.cc.o CMakeFiles/ost_conop.dir/compound.cc.o CMakeFiles/ost_conop.dir/compound_lib.cc.o CMakeFiles/ost_conop.dir/ring_finder.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_conop.so.2.9 ../../../stage/lib/libost_conop.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 30%] Built target ost_conop make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -MF CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o.d -o CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/svd_superpose.cc [ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o -MF CMakeFiles/_ost_img.dir/export_image_list.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_image_list.cc [ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o -MF CMakeFiles/_ost_img.dir/export_map.cc.o.d -o CMakeFiles/_ost_img.dir/export_map.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/export_map.cc [ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o -MF CMakeFiles/_ost_img.dir/wrap_img.cc.o.d -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/wrap_img.cc In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/basic_fun.h:12: In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::pair; _Args = {std::pair}; _Tp = std::pair]', inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = std::pair; _Args = {std::pair}; _Tp = std::pair]' at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/14/bits/vector.tcc:634:26, inlined from 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/14/bits/vector.tcc:123:21, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/14/bits/stl_vector.h:1301:21, inlined from 'int trimComplex(std::vector > >&, std::vector >&, std::vector >&, std::vector&, const std::vector > >&, const std::vector >&, const std::vector >&, const std::vector&, const std::vector&, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:2955:33: /usr/include/c++/14/bits/new_allocator.h:191:11: warning: 'dinter' may be used uninitialized [-Wmaybe-uninitialized] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h: In function 'int trimComplex(std::vector > >&, std::vector >&, std::vector >&, std::vector&, const std::vector > >&, const std::vector >&, const std::vector >&, const std::vector&, const std::vector&, int, int)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/USalign/MMalign.h:2908:12: note: 'dinter' was declared here 2908 | double dinter; | ^~~~~~ make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gfx/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -MF CMakeFiles/ost_gfx.dir/bitmap_io.cc.o.d -o CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/bitmap_io.cc [ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -MF CMakeFiles/ost_mol_alg.dir/clash_score.cc.o.d -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/clash_score.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o -MF CMakeFiles/_ost_mol.dir/export_editors.cc.o.d -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_editors.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_entity.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_entity_view.cc [ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o -MF CMakeFiles/ost_gfx.dir/exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/exporter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/exporter.cc /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc: In function 'ost::bindings::MMAlignResult ost::bindings::WrappedMMAlign(const std::vector&, const std::vector&, const ost::seq::SequenceList&, const ost::seq::SequenceList&, const std::vector&, const std::vector&, bool, const std::map&)': /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'seqx' may be used uninitialized [-Wmaybe-uninitialized] 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 | sequence, d0_scale, fast_opt, chainmap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:551:11: note: 'seqx' was declared here 551 | char *seqx, *seqy; // for the protein sequence | ^~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'seqy' may be used uninitialized [-Wmaybe-uninitialized] 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 | sequence, d0_scale, fast_opt, chainmap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:551:18: note: 'seqy' was declared here 551 | char *seqx, *seqy; // for the protein sequence | ^~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'secx' may be used uninitialized [-Wmaybe-uninitialized] 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 | sequence, d0_scale, fast_opt, chainmap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:552:11: note: 'secx' was declared here 552 | char *secx, *secy; // for the secondary structure | ^~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'secy' may be used uninitialized [-Wmaybe-uninitialized] 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 | sequence, d0_scale, fast_opt, chainmap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/wrap_tmalign.cc:552:18: note: 'secy' was declared here 552 | char *secx, *secy; // for the secondary structure | ^~~~ [ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/collada_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/collada_exporter.cc [ 31%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o -MF CMakeFiles/_ost_mol.dir/export_property_id.cc.o.d -o CMakeFiles/_ost_mol.dir/export_property_id.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_property_id.cc [ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o -MF CMakeFiles/ost_gfx.dir/color.cc.o.d -o CMakeFiles/ost_gfx.dir/color.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color.cc [ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG 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/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/sec_structure_segments.cc [ 31%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o -MF CMakeFiles/_ost_mol.dir/export_query.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_query.cc [ 31%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_residue.cc [ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o -MF CMakeFiles/ost_gfx.dir/primitives.cc.o.d -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/primitives.cc [ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o -MF CMakeFiles/ost_gfx.dir/entity.cc.o.d -o CMakeFiles/ost_gfx.dir/entity.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/entity.cc [ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -MF CMakeFiles/ost_gfx.dir/symmetry_node.cc.o.d -o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/symmetry_node.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_node.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_node.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_node.cc [ 32%] Linking CXX shared library ../../../stage/lib/libost_bindings.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_bindings.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.9 -o ../../../stage/lib/libost_bindings.so.2.9.0 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.9.0 ../../../stage/lib/libost_bindings.so.2.9 ../../../stage/lib/libost_bindings.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 32%] Built target ost_bindings [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_residue_view.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_object.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_object.cc [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/local_dist_diff_test.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o -MF CMakeFiles/_ost_mol.dir/export_surface.cc.o.d -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_surface.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_prim.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_prim.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_test_object.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh:27, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh:31, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/entity.cc:39: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/entity.cc:52: /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -MF CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_bounding_box.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o -MF CMakeFiles/ost_gfx.dir/input.cc.o.d -o CMakeFiles/ost_gfx.dir/input.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/input.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_query_view_wrapper.cc [ 32%] Linking CXX shared module ../../../../stage/lib/python3.12/dist-packages/ost/img/_ost_img.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1 [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o -MF CMakeFiles/ost_gfx.dir/prim_list.cc.o.d -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/prim_list.cc /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_img.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.12/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 32%] Built target _ost_img make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 32%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -MF CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o.d -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod/wrap_alg.cc In file included from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_test_object.hh:28, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_test_object.cc:31: /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=] 124 | virtual geom::AlignedCuboid GetBoundingBox(bool use_tf=false) const; | ^~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_test_object.hh:40:31: note: by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const' 40 | virtual geom::AlignedCuboid GetBoundingBox() const; | ^~~~~~~~~~~~~~ [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o -MF CMakeFiles/ost_gfx.dir/scene.cc.o.d -o CMakeFiles/ost_gfx.dir/scene.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/scene.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o -MF CMakeFiles/ost_gfx.dir/selection.cc.o.d -o CMakeFiles/ost_gfx.dir/selection.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/selection.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o -MF CMakeFiles/_ost_mol.dir/export_torsion.cc.o.d -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_torsion.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o -MF CMakeFiles/_ost_mol.dir/export_visitor.cc.o.d -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_visitor.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o -MF CMakeFiles/ost_gfx.dir/surface.cc.o.d -o CMakeFiles/ost_gfx.dir/surface.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/surface.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o -MF CMakeFiles/ost_gfx.dir/gradient.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gradient.cc In file included from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/scene.cc:49: /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=] 124 | virtual geom::AlignedCuboid GetBoundingBox(bool use_tf=false) const; | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/scene.cc:50: /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_test_object.hh:40:31: note: by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const' 40 | virtual geom::AlignedCuboid GetBoundingBox() const; | ^~~~~~~~~~~~~~ [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -MF CMakeFiles/_ost_mol.dir/wrap_mol.cc.o.d -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/wrap_mol.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/export_entity_property_mapper.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -MF CMakeFiles/ost_gfx.dir/gradient_manager.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gradient_manager.cc In file included from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/surface.hh:32, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/surface.cc:28: /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [ 32%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_filter.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod/export_filter.cc [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/distance_test_common.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/vertex_array.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/vertex_array_helper.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o -MF CMakeFiles/ost_gfx.dir/material.cc.o.d -o CMakeFiles/ost_gfx.dir/material.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/material.cc [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/distance_rmsd_test.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB 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CMakeFiles/ost_gfx.dir/povray.cc.o.d -o CMakeFiles/ost_gfx.dir/povray.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/povray.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/gost_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/gost_exporter.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -MF CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o.d -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/superpose_frames.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -MF CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o.d -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/filter_clashes.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -MF CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o.d -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/construct_cbeta.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o -MF CMakeFiles/ost_gfx.dir/texture.cc.o.d -o CMakeFiles/ost_gfx.dir/texture.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/texture.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/color_op.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/by_element_color_op.cc /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/vertex_array.cc:1311:8: warning: 'geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)' defined but not used [-Wunused-function] 1311 | Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/vertex_array.cc:1239:8: warning: 'void ost::gfx::{anonymous}::render_aalines(AALineList&, float, float)' defined but not used [-Wunused-function] 1239 | void render_aalines(AALineList& line_list, float w, float r) | ^~~~~~~~~~~~~~ [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/by_chain_color_op.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/uniform_color_op.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/gradient_color_op.cc [ 35%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod/export_normalizer.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/trajectory_analysis.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/entity_view_color_op.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/by_element_color_op.cc:22: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ [ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/basic_gradient_color_op.cc In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/log.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/distance_rmsd_test.cc:1: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:30, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/distance_rmsd_test.cc:2: /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/ios:42: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/by_chain_color_op.cc:23: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ [ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/gradient_level_color_op.cc [ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/entity_renderer.cc [ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/entity_detail.cc [ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cartoon_renderer.cc [ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc [ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cpk_renderer.cc [ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/debug_renderer.cc [ 36%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/structure_analysis.cc In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/log.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/filter_clashes.cc:19: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:372:38: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:30, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/filter_clashes.cc:20: /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/ios:42: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:372:38: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:372:38: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:372:38: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/surface.hh:32, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/basic_gradient_color_op.cc:22: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/surface.hh:102:8: note: by 'ost::gfx::Surface::Apply' 102 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ [ 36%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/consistency_checks.cc [ 37%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod/export_transcendentals.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/sline_renderer.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -MF CMakeFiles/ost_mol_alg.dir/pdbize.cc.o.d -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/pdbize.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/line_trace_renderer.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -MF CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/backbone_trace.cc /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc: In member function 'void ost::gfx::impl::CustomRenderer::PrepareRendering(ost::gfx::impl::GfxView&, ost::gfx::IndexedVertexArray&, bool)': /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc:67:25: warning: possibly dangling reference to a temporary [-Wdangling-reference] 67 | const geom::Vec3& p0=it->bond.GetFirst().GetPos(); | ^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc:67:54: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetFirst() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()' 67 | const geom::Vec3& p0=it->bond.GetFirst().GetPos(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc:68:25: warning: possibly dangling reference to a temporary [-Wdangling-reference] 68 | const geom::Vec3& p2=it->bond.GetSecond().GetPos(); | ^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc:68:55: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetSecond() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()' 68 | const geom::Vec3& p2=it->bond.GetSecond().GetPos(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc: In member function 'virtual void ost::gfx::impl::CustomRenderer::RenderPov(ost::gfx::PovState&, const std::string&)': /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc:93:23: warning: possibly dangling reference to a temporary [-Wdangling-reference] 93 | const geom::Vec3& p0=it->bond.GetFirst().GetPos(); | ^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc:93:52: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetFirst() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()' 93 | const geom::Vec3& p0=it->bond.GetFirst().GetPos(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc:94:23: warning: possibly dangling reference to a temporary [-Wdangling-reference] 94 | const geom::Vec3& p2=it->bond.GetSecond().GetPos(); | ^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.cc:94:53: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetSecond() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()' 94 | const geom::Vec3& p2=it->bond.GetSecond().GetPos(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/connect_renderer_base.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cpk_renderer.hh:24, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cpk_renderer.cc:19: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cpk_renderer.cc:23: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ [ 38%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_polar.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod/export_polar.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh:27, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/debug_renderer.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/debug_renderer.cc:19: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [ 38%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -MF CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/adjacency_bitmap.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc:26: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc: In member function 'void ost::gfx::impl::SimpleRenderer::PrepareRendering(ost::gfx::impl::GfxView&, ost::gfx::IndexedVertexArray&)': /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc:125:25: warning: possibly dangling reference to a temporary [-Wdangling-reference] 125 | const geom::Vec3& p0=it->bond.GetFirst().GetPos(); | ^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc:125:54: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetFirst() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()' 125 | const geom::Vec3& p0=it->bond.GetFirst().GetPos(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc:126:25: warning: possibly dangling reference to a temporary [-Wdangling-reference] 126 | const geom::Vec3& p2=it->bond.GetSecond().GetPos(); | ^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc:126:55: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetSecond() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()' 126 | const geom::Vec3& p2=it->bond.GetSecond().GetPos(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc: In member function 'virtual void ost::gfx::impl::SimpleRenderer::RenderPov(ost::gfx::PovState&, const std::string&)': /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc:203:23: warning: possibly dangling reference to a temporary [-Wdangling-reference] 203 | const geom::Vec3& p0=it->bond.GetFirst().GetPos(); | ^~ cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/trace_renderer_base.cc /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc:203:52: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetFirst() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()' 203 | const geom::Vec3& p0=it->bond.GetFirst().GetPos(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc:204:23: warning: possibly dangling reference to a temporary [-Wdangling-reference] 204 | const geom::Vec3& p2=it->bond.GetSecond().GetPos(); | ^~ /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.cc:204:53: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetSecond() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()' 204 | const geom::Vec3& p2=it->bond.GetSecond().GetPos(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -MF CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/mapped_property.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -MF CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/tabulated_trig.cc [ 38%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -MF CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc [ 38%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -MF CMakeFiles/ost_mol_alg.dir/domain_find.cc.o.d -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/domain_find.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/trace_renderer.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -MF CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/fast_spheres.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx.hh:26, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh:35, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/backbone_trace.hh:29, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/backbone_trace.cc:22: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [ 38%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -MF CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o.d -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/similarity_matrix.cc [ 40%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB 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CMakeFiles/ost_mol_alg.dir/accessibility.cc.o.d -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/render_options.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/line_render_options.cc [ 40%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/sec_struct.cc [ 40%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -MF CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o.d -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/nonstandard.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/simple_render_options.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/sline_render_options.cc [ 41%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o -MF CMakeFiles/ost_mol_alg.dir/molck.cc.o.d -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/molck.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/line_trace_render_options.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/cartoon_render_options.cc In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/log.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:1: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:66:20: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:30, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:2: /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/ios:42: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:66:20: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:66:20: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:66:20: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ [ 41%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -MF CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o.d -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/find_membrane.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/trace_render_options.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/map_handle_color_op.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o -MF CMakeFiles/ost_gfx.dir/map_iso.cc.o.d -o CMakeFiles/ost_gfx.dir/map_iso.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/map_iso.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o -MF CMakeFiles/ost_gfx.dir/map_slab.cc.o.d -o CMakeFiles/ost_gfx.dir/map_slab.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/map_slab.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ 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/usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_gen_s.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK 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-fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_octree.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_gen_o.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -MF CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/octree_isocont.cc [ 42%] Linking CXX shared module ../../../../stage/lib/python3.12/dist-packages/ost/img/alg/_ost_img_alg.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1 [ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -MF CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o.d -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/entity_to_density.cc /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_img_alg.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.12/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 42%] Built target _ost_img_alg [ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/biounit.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/biounit.cc.o -MF CMakeFiles/ost_mol_alg.dir/biounit.cc.o.d -o CMakeFiles/ost_mol_alg.dir/biounit.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/biounit.cc [ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/gdt.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/gdt.cc.o -MF CMakeFiles/ost_mol_alg.dir/gdt.cc.o.d -o CMakeFiles/ost_mol_alg.dir/gdt.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/gdt.cc In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:445:21: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:445:21: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:445:21: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:445:21: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:448:21: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:448:21: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:448:21: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:448:21: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:453:23: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:453:23: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:453:23: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/contact_overlap.cc:453:23: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ [ 43%] Linking CXX shared module ../../../../stage/lib/python3.12/dist-packages/ost/mol/_ost_mol.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_mol.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.12/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 43%] Built target _ost_mol make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 43%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o [ 43%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -MF CMakeFiles/_ost_seq.dir/wrap_seq.cc.o.d -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/pymod/wrap_seq.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o -MF CMakeFiles/_ost_seq.dir/export_sequence.cc.o.d -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/pymod/export_sequence.cc [ 43%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -MF CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o.d -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/base/pymod/export_profile_handle.cc In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/QR:11, from /usr/include/eigen3/Eigen/SVD:11, from /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cartoon_renderer.cc:26: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/include/c++/14/complex:45, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/base.hh:24, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/module_config.hh:22, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_view.hh:24, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/accessibility.hh:23, from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:1: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_base.hh:25, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_view.hh:27: /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/ios:42: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:778:21: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:778:21: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:778:21: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:778:21: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:785:32: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:785:32: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:785:32: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:785:32: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:788:21: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:788:21: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:788:21: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:788:21: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:803:35: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:803:35: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:803:35: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:803:35: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:808:35: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:808:35: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:808:35: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/accessibility.cc:808:35: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/domain_find.cc:11: In member function 'void ost::mol::alg::AdjacencyBitmap::set(size_t, size_t, bool, bool)', inlined from 'ost::mol::alg::AdjacencyBitmap::AdjacencyBitmap(const ost::mol::alg::DistanceMatrix&, const ost::mol::alg::DistanceMatrix&, Real, Real, int, int)' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/adjacency_bitmap.hh:49:16, inlined from 'static ost::mol::alg::DomainsPtr ost::mol::alg::Domains::FromDistMats(const ost::mol::alg::DistanceMatrix&, const ost::mol::alg::DistanceMatrix&, Real, Real, Real, int, bool, bool)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/domain_find.cc:363:37: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/adjacency_bitmap.hh:109:23: warning: '*(uint64_t*)' may be used uninitialized [-Wmaybe-uninitialized] 109 | data_[byte_index] &= ~(one << bit_index); | ~~~~~~~~~~~~~~~~^ In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/include/c++/14/complex:45, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/base.hh:24, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/module_config.hh:22, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:22, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/find_membrane.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/find_membrane.cc:1: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/find_membrane.cc:1053:20: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:30, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26: /usr/include/boost/variant/variant.hpp: In function 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/ios:42: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/find_membrane.cc:1053:20: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/find_membrane.cc:1053:20: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)' at /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/find_membrane.cc:1053:20: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ [ 43%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/atom_scattering_properties.txt /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/atom_scattering_properties.txt cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/stereo_chemical_props.txt /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/stereo_chemical_props.txt cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_mol_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol_alg.so.2.9 -o ../../../../stage/lib/libost_mol_alg.so.2.9.0 CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o CMakeFiles/ost_mol_alg.dir/molck.cc.o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o CMakeFiles/ost_mol_alg.dir/biounit.cc.o CMakeFiles/ost_mol_alg.dir/gdt.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../../stage/lib/libost_conop.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_db.so.2.9.0 ../../../../stage/lib/libost_seq.so.2.9.0 ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../../stage/lib/libost_mol_alg.so.2.9 ../../../../stage/lib/libost_mol_alg.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 43%] Built target ost_mol_alg make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o -MF CMakeFiles/ost_io.dir/io_manager.cc.o.d -o CMakeFiles/ost_io.dir/io_manager.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/io_manager.cc [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o -MF CMakeFiles/ost_io.dir/convert.cc.o.d -o CMakeFiles/ost_io.dir/convert.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/convert.cc [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_reader.cc [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 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/build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_mae_handler.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.cc [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_mmcif_handler.cc [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_sdf_handler.cc [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pdb_handler.cc [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB 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-DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_reader.cc [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_writer.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/save_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/save_entity.cc [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/load_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/load_entity.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/surface_io_msms_handler.cc [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o -MF CMakeFiles/ost_io.dir/mol/load_surface.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/load_surface.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/chemdict_parser.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o -MF CMakeFiles/ost_io.dir/mol/io_profile.cc.o.d -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/io_profile.cc /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/surface_io_msms_handler.cc: In function 'std::pair ost::io::{anonymous}::detect_files(const boost::filesystem::path&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/surface_io_msms_handler.cc:36:45: warning: 'boost::filesystem::path boost::filesystem::change_extension(const path&, const path&)' is deprecated: Use path::replace_extension() instead [-Wdeprecated-declarations] 36 | return std::make_pair(bf::change_extension(loc, ".vert"), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/surface_io_msms_handler.cc:25: /usr/include/boost/filesystem/convenience.hpp:41:13: note: declared here 41 | inline path change_extension(const path& p, const path& new_extension) | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/surface_io_msms_handler.cc:37:45: warning: 'boost::filesystem::path boost::filesystem::change_extension(const path&, const path&)' is deprecated: Use path::replace_extension() instead [-Wdeprecated-declarations] 37 | bf::change_extension(loc, ".face")); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:41:13: note: declared here 41 | inline path change_extension(const path& p, const path& new_extension) | ^~~~~~~~~~~~~~~~ [ 46%] Linking CXX shared library ../../../stage/lib/libost_gfx.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/test_texture.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/textures/test_texture.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/glyph_texture.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/textures/glyph_texture.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_gfx.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.9 -o 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CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_img_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_db.so.2.9.0 ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -MF CMakeFiles/ost_io.dir/mol/dcd_io.cc.o.d -o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/dcd_io.cc /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_reader.cc: In member function 'void ost::io::SDFReader::ClearState(const boost::filesystem::path&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_reader.cc:125:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 125 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_reader.cc:24: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.cc: In constructor 'ost::io::PDBWriter::PDBWriter(const boost::filesystem::path&, const ost::io::IOProfile&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.cc:395:58: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 395 | if (boost::iequals(".pqr", boost::filesystem::extension(filename))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.cc:28: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.cc:398:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 398 | if (boost::iequals(".gz", boost::filesystem::extension(filename))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.cc: In constructor 'ost::io::PDBWriter::PDBWriter(const String&, const ost::io::IOProfile&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.cc:414:58: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 414 | if (boost::iequals(".pqr", boost::filesystem::extension(filename))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.cc:417:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 417 | if (boost::iequals(".gz", boost::filesystem::extension(filename))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_crd_handler.cc: In constructor 'ost::io::CRDReader::CRDReader(const boost::filesystem::path&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_crd_handler.cc:63:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 63 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_crd_handler.cc:27: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.9.0 ../../../stage/lib/libost_gfx.so.2.9 ../../../stage/lib/libost_gfx.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 46%] Built target ost_gfx [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/star_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/star_parser.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/star_parser.cc /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pdb_handler.cc: In member function 'virtual void ost::io::EntityIOPDBHandler::Export(const ost::mol::EntityView&, const boost::filesystem::path&) const': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pdb_handler.cc:52:50: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 52 | if (boost::iequals(boost::filesystem::extension(loc), ".pqr")) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pdb_handler.cc:27: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_reader.cc: In member function 'void ost::io::PDBReader::Init(const boost::filesystem::path&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_reader.cc:91:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 91 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_reader.cc:20: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_mae_handler.cc: In constructor 'ost::io::MAEReader::MAEReader(const boost::filesystem::path&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_mae_handler.cc:60:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 60 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_mae_handler.cc:31: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_reader.cc:99:49: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 99 | if(boost::iequals(boost::filesystem::extension(loc), ".pqr")) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pqr_handler.cc: In constructor 'ost::io::PQRReader::PQRReader(const boost::filesystem::path&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pqr_handler.cc:61:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 61 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pqr_handler.cc:28: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_writer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB 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/usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_reader.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_writer.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_str.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_str.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_str.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_str.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_str.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_str.cc /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/star_writer.cc: In member function 'void ost::io::StarWriter::Write(const String&, const String&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/star_writer.cc:52:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 52 | if (boost::iequals(".gz", boost::filesystem::extension(filename))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/star_writer.cc:22: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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-isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o -MF CMakeFiles/ost_io.dir/mol/omf.cc.o.d -o CMakeFiles/ost_io.dir/mol/omf.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/omf.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/pssm_io_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dx_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB 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CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_spi_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_situs_handler.cc /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/pssm_io_handler.cc: In member function 'virtual void ost::io::PssmIOHandler::Import(ost::seq::ProfileHandle&, const boost::filesystem::path&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/pssm_io_handler.cc:47:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 47 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/pssm_io_handler.cc:27: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_mrc_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dm3_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o cd 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_tiff_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dat_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_ipl_handler.cc /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dx_handler.cc: In member function 'virtual void ost::io::MapIODxHandler::Import(ost::img::MapHandle&, const boost::filesystem::path&, const ost::io::ImageFormatBase&)': /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dx_handler.cc:97:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 97 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dx_handler.cc:31: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_jpk_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_nanoscope_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_png_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_df3_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o -MF CMakeFiles/ost_io.dir/img/image_format.cc.o.d -o CMakeFiles/ost_io.dir/img/image_format.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/image_format.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o -MF CMakeFiles/ost_io.dir/img/tiff_util.cc.o.d -o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/tiff_util.cc [ 50%] Linking CXX shared module ../../../../stage/lib/python3.12/dist-packages/ost/seq/_ost_seq.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_seq.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.12/dist-packages/ost/seq/_ost_seq.so CMakeFiles/_ost_seq.dir/export_sequence.cc.o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/seq/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 50%] Built target _ost_seq make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/db/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 50%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o -MF CMakeFiles/_ost_db.dir/wrap_db.cc.o.d -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/db/pymod/wrap_db.cc [ 50%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -MF CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o.d -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/wrap_seq_alg.cc [ 50%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -MF CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o.d -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/wrap_bindings.cc [ 50%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o -MF CMakeFiles/_ost_db.dir/export_linear_db.cc.o.d -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/db/pymod/export_linear_db.cc [ 50%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -MF CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o.d -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/export_tmalign.cc [ 50%] Linking CXX shared module ../../../stage/lib/python3.12/dist-packages/ost/bindings/_ost_bindings.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_bindings.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.12/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_bindings.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/lga.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/hbplus.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/msms.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/tmtools.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/dssp.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/clustalw.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/utils.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/naccess.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/hhblits.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/hhblits2.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./hhblits2.pyc\",\"hhblits2.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/hhblits3.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./hhblits3.pyc\",\"hhblits3.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/blast.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/cadscore.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/kclust.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/ialign.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/mmseqs2.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./mmseqs2.pyc\",\"mmseqs2.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod/dockq.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/bindings/./dockq.pyc\",\"dockq.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 50%] Built target _ost_bindings [ 50%] Linking CXX shared module ../../../stage/lib/python3.12/dist-packages/ost/db/_ost_db.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_db.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.12/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/db/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 50%] Built target _ost_db make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -MF CMakeFiles/_ost_conop.dir/wrap_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/wrap_conop.cc [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o -MF CMakeFiles/_ost_conop.dir/export_compound.cc.o.d -o CMakeFiles/_ost_conop.dir/export_compound.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/export_compound.cc [ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o -MF CMakeFiles/_ost_conop.dir/export_processor.cc.o.d -o CMakeFiles/_ost_conop.dir/export_processor.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/export_processor.cc [ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -MF CMakeFiles/_ost_conop.dir/export_heuristic.cc.o.d -o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/export_heuristic.cc [ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -MF CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o.d -o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/export_amino_acids.cc [ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o -MF CMakeFiles/_ost_conop.dir/export_diag.cc.o.d -o CMakeFiles/_ost_conop.dir/export_diag.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/export_diag.cc [ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o -MF CMakeFiles/_ost_conop.dir/export_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/export_conop.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/export_conop.cc [ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 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-fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -MF CMakeFiles/_ost_conop.dir/export_rule_based.cc.o.d -o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/export_rule_based.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -MF CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o.d -o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/export_ring_finder.cc [ 51%] Linking CXX shared library ../../../stage/lib/libost_io.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC 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-Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../stage/lib/libost_img_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.9.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../stage/lib/libost_seq.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libparasail.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_io.so.2.9.0 ../../../stage/lib/libost_io.so.2.9 ../../../stage/lib/libost_io.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 51%] Built target ost_io make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/depend make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake "--color=" make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake "--color=" make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/depend make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/tools/molck /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tools/molck /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake "--color=" [ 51%] Generating tools/moc_tool_options_win.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp_parameters [ 51%] Generating data_viewer/moc_data_viewer.cpp make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp_parameters make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 51%] Generating data_viewer/moc_argand.cpp make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/build [ 51%] Generating data_viewer/moc_data_viewer_panel_base.cpp make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp_parameters [ 52%] Generating data_viewer/moc_fft_panel.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp_parameters [ 52%] Building CXX object modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -MF CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o.d -o CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_mae_standalone.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp_parameters [ 52%] Building CXX object modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -MF CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o.d -o CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/src/chemdict_tool.cc [ 52%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/forcefield.cc.o [ 52%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/forcefield.cc.o -MF CMakeFiles/ost_mol_mm.dir/forcefield.cc.o.d -o CMakeFiles/ost_mol_mm.dir/forcefield.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/forcefield.cc [ 52%] Generating data_viewer/moc_info_panel.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/gromacs_block_modifiers.cc [ 52%] Building CXX object modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp_parameters [ 52%] Generating data_viewer/moc_overlay_manager_gui.cpp [ 52%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o -MF CMakeFiles/lddt.dir/lddt.cc.o.d -o CMakeFiles/lddt.dir/lddt.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/lddt.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp_parameters cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o -MF CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o.d -o CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/ff_reader.cc [ 53%] Building CXX object tools/molck/CMakeFiles/molck.dir/main.cc.o [ 53%] Generating data_viewer/moc_pointlist_overlay_base.cpp [ 53%] Generating data_viewer/moc_null_overlay.cpp [ 53%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tools/molck && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT tools/molck/CMakeFiles/molck.dir/main.cc.o -MF CMakeFiles/molck.dir/main.cc.o.d -o CMakeFiles/molck.dir/main.cc.o -c /build/reproducible-path/openstructure-2.9.0/tools/molck/main.cc [ 53%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o [ 53%] Generating data_viewer/moc_overlay_base.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp_parameters cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp_parameters cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o -MF CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o.d -o CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/buildingblock.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp_parameters cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/heuristic_block_modifiers.cc [ 53%] Generating messages/moc_log_reader.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp_parameters [ 53%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/interaction.cc.o [ 53%] Generating messages/moc_message_box_widget.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp_parameters cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/interaction.cc.o -MF CMakeFiles/ost_mol_mm.dir/interaction.cc.o.d -o CMakeFiles/ost_mol_mm.dir/interaction.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/interaction.cc [ 55%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/simulation.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/simulation.cc.o -MF CMakeFiles/ost_mol_mm.dir/simulation.cc.o.d -o CMakeFiles/ost_mol_mm.dir/simulation.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/simulation.cc [ 55%] Generating messages/moc_message_widget.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp_parameters [ 55%] Generating moc_file_browser.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_browser.cpp_parameters [ 55%] Generating moc_dock_widget.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp_parameters [ 55%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/modeller.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/modeller.cc.o -MF CMakeFiles/ost_mol_mm.dir/modeller.cc.o.d -o CMakeFiles/ost_mol_mm.dir/modeller.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/modeller.cc [ 56%] Generating moc_file_type_dialog.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp_parameters [ 56%] Generating moc_file_viewer.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_viewer.cpp_parameters [ 56%] Generating moc_gl_canvas.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp_parameters [ 56%] Generating moc_gosty_app.cpp [ 56%] Generating moc_gl_win.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_win.cpp_parameters cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp_parameters [ 56%] Generating moc_main.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp_parameters [ 56%] Generating moc_main_window.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp_parameters [ 56%] Generating moc_main_area.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_area.cpp_parameters [ 56%] Generating moc_perspective.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_perspective.cpp_parameters [ 57%] Generating moc_scene_selection.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_selection.cpp_parameters [ 57%] Generating moc_widget.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget.cpp_parameters [ 57%] Generating moc_scene_menu.cpp [ 57%] Generating moc_widget_geom_handler.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp_parameters cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_menu.cpp_parameters [ 57%] Generating moc_widget_pool.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_pool.cpp_parameters [ 57%] Generating panels/moc_bottom_bar.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp_parameters [ 57%] Generating panels/moc_button_bar.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp_parameters [ 58%] Generating panels/moc_drop_box.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp_parameters [ 58%] Generating panels/moc_button_box.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp_parameters [ 58%] Generating panels/moc_event_button.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp_parameters [ 58%] Generating panels/moc_panel_bar.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp_parameters [ 58%] Generating panels/moc_panel_widget_container.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp_parameters [ 58%] Generating panels/moc_panel_bar_widget_holder.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp_parameters [ 58%] Generating panels/moc_panel_manager.cpp [ 58%] Generating panels/moc_side_bar.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp_parameters cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp_parameters [ 58%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o -MF CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o.d -o CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/state_extractor.cc [ 58%] Generating panels/moc_splitter_panel_bar.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp_parameters [ 58%] Generating panels/moc_tabbed_panel_bar.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp_parameters [ 58%] Generating python_shell/moc_completer_base.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp_parameters [ 58%] Generating python_shell/moc_output_redirector.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp_parameters [ 58%] Generating python_shell/moc_gutter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp_parameters [ 58%] Generating python_shell/moc_path_completer.cpp [ 58%] Generating python_shell/moc_main_thread_runner.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp_parameters cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp_parameters [ 58%] Generating python_shell/moc_python_completer.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp_parameters [ 60%] Generating python_shell/moc_python_interpreter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp_parameters [ 60%] Generating python_shell/moc_python_shell.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp_parameters [ 60%] Generating python_shell/moc_python_interpreter_worker.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp_parameters [ 60%] Generating python_shell/moc_python_namespace_tree_model.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp_parameters [ 60%] Generating python_shell/moc_python_shell_widget.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp_parameters [ 60%] Generating python_shell/moc_state.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp_parameters [ 60%] Generating python_shell/moc_state_machine.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp_parameters [ 60%] Generating python_shell/moc_text_logger.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp_parameters [ 60%] Generating python_shell/moc_transition.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp_parameters [ 60%] Generating python_shell/moc_transition_guard.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp_parameters [ 61%] Generating scene_win/moc_context_menu.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp_parameters [ 61%] Generating scene_win/moc_current_selection_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp_parameters [ 61%] Generating scene_win/moc_custom_part_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp_parameters [ 61%] Generating scene_win/moc_entity_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp_parameters [ 61%] Generating scene_win/moc_entity_part_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp_parameters [ 61%] Generating scene_win/moc_gfx_scene_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp_parameters [ 61%] Generating scene_win/moc_label_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp_parameters [ 61%] Generating scene_win/moc_render_mode_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp_parameters [ 61%] Generating scene_win/moc_render_modes_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp_parameters [ 61%] Generating scene_win/moc_root_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp_parameters [ 61%] Generating scene_win/moc_scene_node.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp_parameters [ 62%] Generating scene_win/moc_scene_win.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp_parameters [ 62%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/observer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/observer.cc.o -MF CMakeFiles/ost_mol_mm.dir/observer.cc.o.d -o CMakeFiles/ost_mol_mm.dir/observer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/observer.cc [ 62%] Generating scene_win/moc_scene_win_model.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp_parameters [ 62%] Generating sequence_viewer/moc_align_properties_painter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp_parameters [ 62%] Generating sequence_viewer/moc_alignment_view_object.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp_parameters [ 62%] Generating sequence_viewer/moc_background_painter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp_parameters [ 62%] Generating sequence_viewer/moc_base_row.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp_parameters [ 63%] Linking CXX shared module ../../../../stage/lib/python3.12/dist-packages/ost/seq/alg/_ost_seq_alg.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq_alg.dir/link.txt --verbose=1 [ 63%] Generating sequence_viewer/moc_base_view_object.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp_parameters /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_seq_alg.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.12/dist-packages/ost/seq/alg/_ost_seq_alg.so CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_seq.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/mat.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/alg/./mat.pyc\",\"mat.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/renumber.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/alg/./renumber.pyc\",\"renumber.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod/aaindex.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/seq/alg/./aaindex.pyc\",\"aaindex.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 63%] Built target _ost_seq_alg [ 63%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/system_creator.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/system_creator.cc.o -MF CMakeFiles/ost_mol_mm.dir/system_creator.cc.o.d -o CMakeFiles/ost_mol_mm.dir/system_creator.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/system_creator.cc [ 63%] Generating sequence_viewer/moc_conservation_painter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp_parameters [ 65%] Generating sequence_viewer/moc_painter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp_parameters [ 65%] Generating sequence_viewer/moc_secstr_row.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp_parameters [ 65%] Generating sequence_viewer/moc_seq_secstr_painter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp_parameters /build/reproducible-path/openstructure-2.9.0/modules/conop/src/chemdict_tool.cc: In function 'int main(int, const char**)': /build/reproducible-path/openstructure-2.9.0/modules/conop/src/chemdict_tool.cc:96:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 96 | if (boost::iequals(".gz", boost::filesystem::extension(argv[2]))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/conop/src/chemdict_tool.cc:27: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/lddt.cc: In function 'ost::conop::CompoundLibPtr load_compound_lib(const String&)': /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/lddt.cc:138:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 138 | fs::path path_only=path_and_exe.branch_path(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/fstream.hpp:17, from /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/lddt.cc:26: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/lddt.cc:139:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 139 | fs::path share_path = path_only.branch_path(); | ~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ [ 65%] Generating sequence_viewer/moc_seq_selection_painter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp_parameters [ 65%] Generating sequence_viewer/moc_seq_text_painter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp_parameters [ 65%] Generating sequence_viewer/moc_sequence_delegate.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp_parameters [ 65%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o -MF CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o.d -o CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/topology_creator.cc [ 65%] Generating sequence_viewer/moc_sequence_model.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp_parameters [ 65%] Generating sequence_viewer/moc_sequence_row.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp_parameters /build/reproducible-path/openstructure-2.9.0/tools/molck/main.cc: In function 'ost::conop::CompoundLibPtr load_compound_lib(const String&)': /build/reproducible-path/openstructure-2.9.0/tools/molck/main.cc:119:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 119 | fs::path path_only=path_and_exe.branch_path(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /build/reproducible-path/openstructure-2.9.0/tools/molck/main.cc:3: /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/tools/molck/main.cc:120:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 120 | fs::path share_path = path_only.branch_path(); | ~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ [ 65%] Linking CXX executable ../../../stage/bin/test_mae_standalone cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mae_standalone.dir/link.txt --verbose=1 [ 65%] Generating sequence_viewer/moc_sequence_search_bar.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp_parameters [ 65%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology.cc.o -MF CMakeFiles/ost_mol_mm.dir/topology.cc.o.d -o CMakeFiles/ost_mol_mm.dir/topology.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/topology.cc [ 65%] Generating sequence_viewer/moc_sequence_table_view.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp_parameters [ 65%] Generating sequence_viewer/moc_sequence_view_object.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp_parameters [ 65%] Generating sequence_viewer/moc_sequence_viewer.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp_parameters [ 66%] Generating sequence_viewer/moc_tick_painter.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp_parameters [ 66%] Generating sequence_viewer/moc_title_row.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp_parameters /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/test_mae_standalone.dir/link.d CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -o ../../../stage/bin/test_mae_standalone -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib ../../../stage/lib/libost_io.so.2.9.0 ../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../stage/lib/libost_img_alg.so.2.9.0 ../../../stage/lib/libost_img.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 66%] Built target test_mae_standalone [ 66%] Generating tools/moc_measure_tool.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp_parameters [ 66%] Generating tools/moc_tool.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp_parameters [ 66%] Generating tools/moc_tool_bar.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp_parameters [ 66%] Generating tools/moc_tool_manager.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp_parameters [ 66%] Generating tools/moc_tool_option.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp_parameters [ 66%] Generating tools/moc_tool_option_group.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp_parameters [ 66%] Generating tools/moc_tool_options.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp_parameters [ 66%] Generating tools/moc_tool_options_widget.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp_parameters [ 66%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/steep.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/steep.cc.o -MF CMakeFiles/ost_mol_mm.dir/steep.cc.o.d -o CMakeFiles/ost_mol_mm.dir/steep.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/steep.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_browser.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_viewer.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_win.cpp [ 67%] Linking CXX shared module ../../../stage/lib/python3.12/dist-packages/ost/conop/_ost_conop.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_conop.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.12/dist-packages/ost/conop/_ost_conop.so CMakeFiles/_ost_conop.dir/wrap_conop.cc.o CMakeFiles/_ost_conop.dir/export_compound.cc.o CMakeFiles/_ost_conop.dir/export_processor.cc.o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o CMakeFiles/_ost_conop.dir/export_conop.cc.o CMakeFiles/_ost_conop.dir/export_diag.cc.o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/conop/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/conop/pymod/cleanup.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/conop/./cleanup.pyc\",\"cleanup.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 67%] Built target _ost_conop make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 67%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -MF CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o.d -o CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/wrap_gfx.cc [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB 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-MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_menu.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp [ 67%] Linking CXX executable ../../../stage/bin/chemdict_tool cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdict_tool.dir/link.txt --verbose=1 [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/chemdict_tool.dir/link.d CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -o ../../../stage/bin/chemdict_tool -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.9.0 ../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../stage/lib/libost_img_alg.so.2.9.0 ../../../stage/lib/libost_img.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 67%] Built target chemdict_tool make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 67%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -MF CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/wrap_mol_alg.cc [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_area.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_area.cpp [ 67%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/export_svd_superpose.cc [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem 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/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_window.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/lddt.dir/link.d CMakeFiles/lddt.dir/lddt.cc.o -o ../../../../stage/bin/lddt -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.9.0 ../../../../stage/lib/libost_mol_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.9.0 ../../../../stage/lib/libost_db.so.2.9.0 ../../../../stage/lib/libost_seq.so.2.9.0 ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 67%] Built target lddt [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 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-D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_selection.cpp [ 67%] Linking CXX executable ../../stage/bin/molck cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tools/molck && /usr/bin/cmake -E cmake_link_script CMakeFiles/molck.dir/link.txt --verbose=1 [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget.cpp [ 67%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/export_scene.cc [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/molck.dir/link.d CMakeFiles/molck.dir/main.cc.o -o ../../stage/bin/molck -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../stage/lib/libost_io.so.2.9.0 ../../stage/lib/libost_mol_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../stage/lib/libost_seq_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../stage/lib/libost_conop.so.2.9.0 ../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../stage/lib/libost_seq.so.2.9.0 ../../stage/lib/libost_mol.so.2.9.0 ../../stage/lib/libost_img_alg.so.2.9.0 ../../stage/lib/libost_img.so.2.9.0 ../../stage/lib/libost_info.so.2.9.0 ../../stage/lib/libost_base.so.2.9.0 ../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 68%] Built target molck [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_pool.cpp [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:28, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp:10: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh: In instantiation of 'ost::gui::WidgetStateSaver::~WidgetStateSaver() [with BASE = QMainWindow]': /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:40:25: required from here 40 | class DLLEXPORT_OST_GUI GostyMainWindow : public WidgetStateSaver | ^~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh:323:8: warning: the address of 'ost::gui::WidgetStateSaver::QMainWindow' will never be NULL [-Waddress] 323 | if(dynamic_cast(this)){ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver::QMainWindow' declared here 263 | class WidgetStateSaver: public BASE | ^~~~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp [ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o cd 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 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-D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -c 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/export_gfx_node.cc [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB 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-DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -MF 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/export_gfx_obj.cc [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp [ 70%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem 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-I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp [ 70%] Building CXX object 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modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI 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-I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp [ 71%] 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp [ 71%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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-DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/export_trajectory_analysis.cc [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB 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-isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp [ 71%] Linking CXX shared library ../../../../stage/lib/libost_mol_mm.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/AMBER03.dat 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-DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/ost_mol_mm.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol_mm.so.2.9 -o ../../../../stage/lib/libost_mol_mm.so.2.9.0 CMakeFiles/ost_mol_mm.dir/forcefield.cc.o CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o CMakeFiles/ost_mol_mm.dir/interaction.cc.o CMakeFiles/ost_mol_mm.dir/simulation.cc.o CMakeFiles/ost_mol_mm.dir/modeller.cc.o CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o CMakeFiles/ost_mol_mm.dir/observer.cc.o CMakeFiles/ost_mol_mm.dir/system_creator.cc.o CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o CMakeFiles/ost_mol_mm.dir/topology.cc.o CMakeFiles/ost_mol_mm.dir/steep.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.9.0 /usr/lib/x86_64-linux-gnu/libOpenMM.so ../../../../stage/lib/libost_mol_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 ../../../../stage/lib/libost_conop.so.2.9.0 ../../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../../stage/lib/libost_seq.so.2.9.0 ../../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_mm.so.2.9.0 ../../../../stage/lib/libost_mol_mm.so.2.9 ../../../../stage/lib/libost_mol_mm.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 71%] Built target ost_mol_mm [ 72%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o -MF CMakeFiles/_ost_gfx.dir/export_surface.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_surface.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/export_surface.cc [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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-Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/../../../../../modules/gui/src/sequence_viewer/sequence_view_object.hh:30, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp:10: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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-fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp [ 73%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK 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modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/export_scene_observer.cc [ 75%] Building CXX 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK 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modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -c 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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-I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp [ 76%] Building CXX object 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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-Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp [ 76%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp [ 77%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gradient.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/export_gradient.cc [ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp [ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/../../../../../modules/gui/src/scene_win/entity_node.hh:28, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp:10: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ [ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp [ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB 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-MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp [ 77%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/export_color_ops.cc [ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp [ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp [ 77%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -MF CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/export_glwin_base.cc [ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp [ 77%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 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modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o -MF CMakeFiles/ost_gui.dir/widget_registry.cc.o.d -o CMakeFiles/ost_gui.dir/widget_registry.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/widget_registry.cc [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -MF CMakeFiles/ost_gui.dir/file_type_dialog.cc.o.d -o CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/file_type_dialog.cc [ 80%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -MF CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/export_bitmap.cc [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB 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-isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o -MF CMakeFiles/ost_gui.dir/dock_widget.cc.o.d -o CMakeFiles/ost_gui.dir/dock_widget.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/dock_widget.cc [ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o -MF CMakeFiles/ost_gui.dir/gl_win.cc.o.d -o CMakeFiles/ost_gui.dir/gl_win.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/gl_win.cc [ 81%] Building CXX object 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/export_non_standard.cc [ 81%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem 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-DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -MF CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o.d -o CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/messages/message_box_widget.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -MF CMakeFiles/ost_gui.dir/messages/log_reader.cc.o.d -o CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/messages/log_reader.cc [ 82%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/export_membrane.cc [ 83%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/export_entity_to_density.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/align_properties_painter.cc [ 83%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/export_biounit.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/base_row.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/background_painter.cc /build/reproducible-path/openstructure-2.9.0/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(QWidget*)': /build/reproducible-path/openstructure-2.9.0/modules/gui/src/file_browser.cc:62:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 62 | model_(new QDirModel), | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/file_browser.cc:53: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(const QString&, QWidget*)': /build/reproducible-path/openstructure-2.9.0/modules/gui/src/file_browser.cc:102:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 102 | model_(new QDirModel), | ^~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 83%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/export_gdt.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:28, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/main.cc:19: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh: In instantiation of 'ost::gui::WidgetStateSaver::~WidgetStateSaver() [with BASE = QMainWindow]': /build/reproducible-path/openstructure-2.9.0/modules/gui/src/main.cc:70:69: required from here 70 | GostyMainWindow::GetDefaultSize(), 0) | ^ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:323:8: warning: the address of 'ost::gui::WidgetStateSaver::QMainWindow' will never be NULL [-Waddress] 323 | if(dynamic_cast(this)){ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver::QMainWindow' declared here 263 | class WidgetStateSaver: public BASE | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh: In instantiation of 'void ost::gui::WidgetStateSaver::set_state_() [with BASE = QMainWindow]': /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:286:5: required from 'ost::gui::WidgetStateSaver::WidgetStateSaver(const QString&, QPoint, QSize, QWidget*) [with BASE = QMainWindow]' 286 | set_state_(); | ^~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/gui/src/main.cc:70:69: required from here 70 | GostyMainWindow::GetDefaultSize(), 0) | ^ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:305:10: warning: the address of 'ost::gui::WidgetStateSaver::QMainWindow' will never be NULL [-Waddress] 305 | if(dynamic_cast(this)){ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver::QMainWindow' declared here 263 | class WidgetStateSaver: public BASE | ^~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/conservation_painter.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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-isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/seq_secstr_painter.cc [ 83%] Building CXX object 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/seq_selection_painter.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/seq_text_painter.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB 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modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_delegate.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -c 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_search_bar.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 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-D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_table_view.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_viewer.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/tick_painter.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/secstr_row.cc:29: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/title_row.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/alignment_view_object.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/base_view_object.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_view_object.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o -MF CMakeFiles/ost_gui.dir/gosty_app.cc.o.d -o CMakeFiles/ost_gui.dir/gosty_app.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/gosty_app.cc [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o -MF CMakeFiles/ost_gui.dir/main_area.cc.o.d -o CMakeFiles/ost_gui.dir/main_area.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/main_area.cc [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -MF CMakeFiles/ost_gui.dir/widget_state_saver.cc.o.d -o CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/widget_state_saver.cc [ 86%] Linking CXX shared module ../../../../stage/lib/python3.12/dist-packages/ost/mol/alg/_ost_mol_alg.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_alg.dir/link.txt --verbose=1 In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_row.cc:29: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_mol_alg.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.12/dist-packages/ost/mol/alg/_ost_mol_alg.so CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_seq_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_conop.so.2.9.0 ../../../../stage/lib/libost_db.so.2.9.0 ../../../../stage/lib/libost_seq.so.2.9.0 ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/views.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./views.pyc\",\"views.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/superpose.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./superpose.pyc\",\"superpose.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/qsscoring.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./qsscoring.pyc\",\"qsscoring.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/trajectory_analysis.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./trajectory_analysis.pyc\",\"trajectory_analysis.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/structure_analysis.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./structure_analysis.pyc\",\"structure_analysis.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/helix_kinks.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./helix_kinks.pyc\",\"helix_kinks.py\",doraise=True)" [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o -MF CMakeFiles/ost_gui.dir/scene_selection.cc.o.d -o CMakeFiles/ost_gui.dir/scene_selection.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_selection.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_model.hh:33, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_model.cc:30: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/hbond.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./hbond.pyc\",\"hbond.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/lddt.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./lddt.pyc\",\"lddt.py\",doraise=True)" [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -MF CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o.d -o CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/widget_geom_handler.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/qsscore.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./qsscore.pyc\",\"qsscore.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/scoring.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./scoring.pyc\",\"scoring.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/chain_mapping.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./chain_mapping.pyc\",\"chain_mapping.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/stereochemistry.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./stereochemistry.pyc\",\"stereochemistry.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/dockq.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./dockq.pyc\",\"dockq.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/contact_score.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./contact_score.pyc\",\"contact_score.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/ligand_scoring.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./ligand_scoring.pyc\",\"ligand_scoring.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/ligand_scoring_base.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./ligand_scoring_base.pyc\",\"ligand_scoring_base.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/ligand_scoring_scrmsd.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./ligand_scoring_scrmsd.pyc\",\"ligand_scoring_scrmsd.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/ligand_scoring_lddtpli.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./ligand_scoring_lddtpli.pyc\",\"ligand_scoring_lddtpli.py\",doraise=True)" [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o -MF CMakeFiles/ost_gui.dir/file_loader.cc.o.d -o CMakeFiles/ost_gui.dir/file_loader.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/file_loader.cc [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/button_bar.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod/bb_lddt.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/alg/./bb_lddt.pyc\",\"bb_lddt.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 86%] Built target _ost_mol_alg make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 86%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o -MF CMakeFiles/_ost_io.dir/wrap_io.cc.o.d -o CMakeFiles/_ost_io.dir/wrap_io.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/pymod/wrap_io.cc [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/drop_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/drop_box.cc [ 86%] Linking CXX shared module ../../../stage/lib/python3.12/dist-packages/ost/gfx/_ost_gfx.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/gradients.xml /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/gradients.xml cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gfx.dir/link.txt --verbose=1 [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_bar.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_view_object.hh:30, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/alignment_view_object.hh:32, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/alignment_view_object.cc:41: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/bottom_bar.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_view_object.hh:30, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_view_object.cc:32: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_gfx.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.12/dist-packages/ost/gfx/_ost_gfx.so CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o CMakeFiles/_ost_gfx.dir/export_scene.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o CMakeFiles/_ost_gfx.dir/export_entity.cc.o CMakeFiles/_ost_gfx.dir/export_surface.cc.o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o CMakeFiles/_ost_gfx.dir/export_color.cc.o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o CMakeFiles/_ost_gfx.dir/export_map.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_gfx.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_img_alg.so.2.9.0 ../../../stage/lib/libost_img.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gfx/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod/py_gfx_obj.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gfx/./py_gfx_obj.pyc\",\"py_gfx_obj.py\",doraise=True)" [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_box.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/button_box.cc make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 86%] Built target _ost_gfx [ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o -MF CMakeFiles/ost_gui.dir/panels/event_button.cc.o.d -o CMakeFiles/ost_gui.dir/panels/event_button.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/event_button.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_manager.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_widget_container.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_bar_widget_holder.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/side_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/side_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/splitter_panel_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/tabbed_panel_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_option_group.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_options.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_option.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh:31, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/gosty_app.cc:29: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh:32: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_manager.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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-I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -MF CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o.d -o CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/mouse_event.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -MF 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-I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_options_widget.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o cd 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_bar.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK 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modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/selection_tool.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/measure_tool.cc In file included from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_selection.cc:28: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_selection.cc:29: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/gutter.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/output_redirector.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/completer_base.cc [ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/dir_model.cc [ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK 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modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/path_completer.cc [ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -c 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/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_interpreter.cc [ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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-Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_interpreter_worker.cc [ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_namespace_tree_model.cc [ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_namespace_tree_item.cc /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/dir_model.cc: In constructor 'ost::gui::OstDirModel::OstDirModel(QObject*)': /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/dir_model.cc:31:18: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 31 | QDirModel(parent) | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/dir_model.hh:26, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/dir_model.cc:23: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell_widget.cc [ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell_text_document_layout.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB 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-I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_node.cc [ 92%] Building CXX object 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/usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/entity_part_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/gfx_scene_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK 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modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/render_mode_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/render_modes_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/root_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win_model.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/map_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/map_tool.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/argand.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/custom_part_node.cc:24: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/data_viewer.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/data_viewer_panel.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/map_iso.hh:33, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/context_menu.cc:31: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/entity_node.hh:28, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/context_menu.cc:34: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/render_mode_node.cc:21: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/entity_part_node.cc:22: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/draw_overlay.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/drawing_functions.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB 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-MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/fft_panel.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/info_panel.cc [ 93%] Building CXX 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/img2qt.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/mask_overlay.cc [ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager.cc [ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager_gui.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win_model.cc:28: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/pointlist_overlay.cc [ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/pointlist_overlay_base.cc [ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/strategies.cc In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/render_modes_node.cc:25: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=] 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st); | ^~~~~ /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply' 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true); | ^~~~~ [ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/viewer_normalizer.cc [ 95%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -MF CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/pymod/export_mmcif_io.cc [ 95%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o -MF CMakeFiles/_ost_io.dir/export_omf_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_omf_io.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/pymod/export_omf_io.cc /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win.cc: In member function 'void ost::gui::SceneWin::RowsInserted(const QModelIndex&, int, int)': /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win.cc:117:31: warning: 'QModelIndex QModelIndex::child(int, int) const' is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations] 117 | model->select(parent.child(start,0),QItemSelectionModel::ClearAndSelect|QItemSelectionModel::Rows); | ~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QModelIndex:1, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:26, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh:34, from /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const | ^~~~~~~~~~~ [ 95%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o -MF CMakeFiles/_ost_io.dir/export_map_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_map_io.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/pymod/export_map_io.cc [ 95%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_sdf_io.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -MF CMakeFiles/_ost_io.dir/export_sdf_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -c 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../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gui.so.2.9.0 ../../../stage/lib/libost_gui.so.2.9 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 95%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o -MF CMakeFiles/gosty.dir/gosty.cc.o.d -o CMakeFiles/gosty.dir/gosty.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/src/gosty.cc [ 95%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o -MF CMakeFiles/gosty.dir/moc_gosty.cpp.o.d -o CMakeFiles/gosty.dir/moc_gosty.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty.cpp [ 95%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o -MF CMakeFiles/gosty.dir/qrc_dngr.cpp.o.d -o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -c /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/qrc_dngr.cpp [ 95%] Linking CXX executable ../../../stage/lib/openstructure/libexec/gosty cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gosty.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/gosty.dir/link.d CMakeFiles/gosty.dir/gosty.cc.o CMakeFiles/gosty.dir/moc_gosty.cpp.o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -o ../../../stage/lib/openstructure/libexec/gosty -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.9.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.9.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.9.0 ../../../stage/lib/libost_img.so.2.9.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../stage/lib/libost_seq.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libparasail.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 95%] Built target gosty [ 96%] Linking CXX shared module ../../../stage/lib/python3.12/dist-packages/ost/io/_ost_io.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_io.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.12/dist-packages/ost/io/_ost_io.so CMakeFiles/_ost_io.dir/wrap_io.cc.o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o CMakeFiles/_ost_io.dir/export_omf_io.cc.o CMakeFiles/_ost_io.dir/export_map_io.cc.o CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../stage/lib/libost_img_alg.so.2.9.0 ../../../stage/lib/libost_img.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/io/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/io/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/io/pymod/remote.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/io/./remote.pyc\",\"remote.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/io/pymod/repository.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/io/./repository.pyc\",\"repository.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 96%] Built target _ost_io make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 96%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o [ 96%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/export_forcefield.cc [ 96%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/export_settings.cc [ 96%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -MF CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o.d -o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/export_alignment_view.cc [ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/export_interaction.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK 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-DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o -MF 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-I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/export_block_modifiers.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/export_topology.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/export_modeller.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -MF CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/wrap_mol_mm.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/export_scene_win.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/export_sequence_viewer.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o -MF CMakeFiles/_ost_gui.dir/export_perspective.cc.o.d -o CMakeFiles/_ost_gui.dir/export_perspective.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/export_perspective.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -MF CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o.d -o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/data_viewer_proxy.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/export_data_viewer.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/export_overlay.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.12 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/export_overlay_manager.cc In file included from /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/export_scene_selection.cc:23: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=] 55 | virtual void DeepSwap(GfxNode& n); | ^~~~~~~~ In file included from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/entity.hh:41, from /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/export_scene_selection.cc:24: /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)' 58 | virtual void DeepSwap(GfxObj& go); | ^~~~~~~~ [100%] Linking CXX shared module ../../../stage/lib/python3.12/dist-packages/ost/gui/_ost_gui.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/presets.xml /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/presets.xml cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/icons/color_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/color_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/icons/preset_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/preset_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/icons/render_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/render_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/icons/tool_icon.png /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/tool_icon.png cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gui.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_gui.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.12/dist-packages/ost/gui/_ost_gui.so CMakeFiles/_ost_gui.dir/wrap_gui.cc.o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o CMakeFiles/_ost_gui.dir/export_tool.cc.o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o CMakeFiles/_ost_gui.dir/export_gosty.cc.o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o CMakeFiles/_ost_gui.dir/export_perspective.cc.o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o CMakeFiles/_ost_gui.dir/export_main_area.cc.o CMakeFiles/_ost_gui.dir/export_panels.cc.o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o CMakeFiles/_ost_gui.dir/export_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o CMakeFiles/_ost_gui.dir/export_overlay.cc.o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.9.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.9.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.9.0 ../../../stage/lib/libost_img.so.2.9.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../stage/lib/libost_seq.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libparasail.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/color_options_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/color_options_widget.pyc\",\"color_options_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/color_select_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/color_select_widget.pyc\",\"color_select_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/combo_options_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/combo_options_widget.pyc\",\"combo_options_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/cpk_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/cpk_widget.pyc\",\"cpk_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/custom_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/custom_widget.pyc\",\"custom_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/gradient_editor_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/gradient_editor_widget.pyc\",\"gradient_editor_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/gradient_info_handler.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/gradient_info_handler.pyc\",\"gradient_info_handler.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/gradient_list_model.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/gradient_list_model.pyc\",\"gradient_list_model.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/gradient_preset_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/gradient_preset_widget.pyc\",\"gradient_preset_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/hsc_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/hsc_widget.pyc\",\"hsc_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/immutable_gradient_info_handler.pyc\",\"immutable_gradient_info_handler.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/immutable_preset_info_handler.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/immutable_preset_info_handler.pyc\",\"immutable_preset_info_handler.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/init_inspector.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/init_inspector.pyc\",\"init_inspector.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/inspector_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/inspector_widget.pyc\",\"inspector_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/map_level_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/map_level_widget.pyc\",\"map_level_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset.pyc\",\"preset.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/remote.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/remote.pyc\",\"remote.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_editor_list_model.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_editor_list_model.pyc\",\"preset_editor_list_model.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_editor_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_editor_widget.pyc\",\"preset_editor_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_info_handler.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_info_handler.pyc\",\"preset_info_handler.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_list_model.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_list_model.pyc\",\"preset_list_model.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/preset_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/preset_widget.pyc\",\"preset_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/render_mode_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/render_mode_widget.pyc\",\"render_mode_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/render_op.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/render_op.pyc\",\"render_op.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/render_options_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/render_options_widget.pyc\",\"render_options_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/scene_observer_impl.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/scene_observer_impl.pyc\",\"scene_observer_impl.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/scene_selection_helper.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/scene_selection_helper.pyc\",\"scene_selection_helper.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/simple_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/simple_widget.pyc\",\"simple_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/sline_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/sline_widget.pyc\",\"sline_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/toolbar_options_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/toolbar_options_widget.pyc\",\"toolbar_options_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/trace_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/trace_widget.pyc\",\"trace_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/tube_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/tube_widget.pyc\",\"tube_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/uniform_color_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/uniform_color_widget.pyc\",\"uniform_color_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/visibility_op.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/visibility_op.pyc\",\"visibility_op.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/line_trace_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/line_trace_widget.pyc\",\"line_trace_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/wireframe_widget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/wireframe_widget.pyc\",\"wireframe_widget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/scene/query_editor.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/scene/query_editor.pyc\",\"query_editor.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/termuse.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/termuse.pyc\",\"termuse.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/superpositiondialog.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/superpositiondialog.pyc\",\"superpositiondialog.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/init.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/init.pyc\",\"init.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/dng/menu.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/dng/menu.pyc\",\"menu.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/init_context_menu.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./init_context_menu.pyc\",\"init_context_menu.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/init_menubar.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./init_menubar.pyc\",\"init_menubar.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/init_spacenav.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./init_spacenav.pyc\",\"init_spacenav.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/init_splash.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./init_splash.pyc\",\"init_splash.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/trajectory_viewer.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./trajectory_viewer.pyc\",\"trajectory_viewer.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/helpwidget.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./helpwidget.pyc\",\"helpwidget.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/table.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./table.pyc\",\"table.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/gui/pymod/gosty_startup.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/gui/./gosty_startup.pyc\",\"gosty_startup.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target _ost_gui make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost_config cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/bin/ost cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/bin/dng cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/ost_startup.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/scripts/dng_startup.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/dng_startup.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target ost_scripts [100%] Linking CXX shared module ../../../../stage/lib/python3.12/dist-packages/ost/mol/mm/_ost_mol_mm.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_mm.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file,CMakeFiles/_ost_mol_mm.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.12/dist-packages/ost/mol/mm/_ost_mol_mm.so CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol_mm.so.2.9.0 /usr/lib/x86_64-linux-gnu/libpython3.12.so /usr/lib/x86_64-linux-gnu/libboost_python312.so.1.83.0 ../../../../stage/lib/libost_io.so.2.9.0 ../../../../stage/lib/libost_mol_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 ../../../../stage/lib/libost_conop.so.2.9.0 ../../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../../stage/lib/libost_seq.so.2.9.0 ../../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libOpenMM.so cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/mm/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod/antechamber.py\",\"/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/mol/mm/./antechamber.pyc\",\"antechamber.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target _ost_mol_mm make[2]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j20 check ARGS\+=--verbose ARGS\+=-j20 make[1]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openstructure-2.9.0 -B/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[2]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openstructure-2.9.0 -B/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/CMakeFiles 94 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color=" make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color=" make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.12.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.12/dist-packages/ -P /build/reproducible-path/openstructure-2.9.0/cmake_support/substitute.cmake cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/bin make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.12.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.12/dist-packages/ -P /build/reproducible-path/openstructure-2.9.0/cmake_support/substitute.cmake make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.12.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.12/dist-packages/ -P /build/reproducible-path/openstructure-2.9.0/cmake_support/substitute.cmake make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.12.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.12/dist-packages/ -P /build/reproducible-path/openstructure-2.9.0/cmake_support/substitute.cmake cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target subst_dng make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target subst_ost_startup.py [ 0%] Built target subst_ost_config [ 0%] Built target subst_ost [ 0%] Built target create_stage make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/geom/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color=" make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color=" make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/info/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color=" make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color=" make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color=" make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/db/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color=" make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/config/./base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./base.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gfx/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color=" make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./def.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./conop.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color=" make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color=" make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color=" make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./exc.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/config/./config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_error.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./processor.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./anisotropic.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./geom.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./dllexport.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./svd_superpose.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./amino_acids.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./forcefield.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/test_utils/compare_files.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_parser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/config/./version.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./version.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./diag.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./ff_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat2.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./binary_container.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./generic_property.hh [ 0%] Built target ost_bindings_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./buildingblock.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./model_check.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat3.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./integrity_error.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./block_modifiers.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat4.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./heuristic.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./invalid_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./correlate.hh [ 0%] Built target ost_config_headers [ 0%] Built target ost_db_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_group.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_list.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./ptr_observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./gromacs_block_modifiers.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_item.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec2.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./log.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./heuristic_block_modifiers.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec3.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./log_sink.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh [ 0%] Built target ost_config cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./ins_del.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec4.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./interaction.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./profile.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fft.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./settings.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./settings.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_path.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./dyn_cast.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_set.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/debug_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./simulation.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./modeller.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/simple_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint_msc.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./state_extractor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./range.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./constants.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh [ 0%] Built target ost_conop_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./system_creator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./topology_creator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./units.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./index.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./index.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/index.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh [ 0%] Built target ost_info_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./topology.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./message.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./profile_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src/./steep.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./steep.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./platform.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./histogram.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./string_ref.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh [ 0%] Built target ost_mol_mm_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh [ 0%] Built target ost_seq_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./pod_vector.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./circle_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./fixed_string.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./tri_matrix.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./quat.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./transform.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/./paged_array.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_base.hh [ 0%] Built target ost_seq_alg_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_types.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./module_config.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./atom_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_base_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh [ 0%] Built target ost_geom_headers make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/geom/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./biounit.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/cpk_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./debug.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/simple_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./gdt.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./dllexport.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chain_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/sline_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./randomize.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_iterator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh [ 0%] Built target ost_mol_alg_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/omf.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chain_type.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chem_class.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_class.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/render_options/trace_render_options.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/geom/src/CMakeFiles/ost_geom.dir/build'. cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./chem_type.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_type.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/image_format.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_factory.hh [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_group.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color=" make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/geom/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./threshold.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/geom/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_source.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./in_mem_coord_source.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh [ 1%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh [ 1%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o [ 1%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_composite3.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/completer_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh [ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_composite2.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_mat3.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh [ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_mat2.cc [ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different 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modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_mat4.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_op3.cc make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_op2.cc [ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle.hh [ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_quat.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_quat.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_op4.cc [ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/base/src/CMakeFiles/ost_base.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./coord_frame.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_vec2.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh [ 3%] Built target ost_base cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend [ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/info/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake "--color=" [ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_vec3.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_vec4.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./editor_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_list.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./editor_type_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./mol.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/info/src/CMakeFiles/ost_info.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh [ 4%] Built target ost_info cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh [ 4%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_transform.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_transform.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/geom/pymod/CMakeFiles/_ost_geom.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./color.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh [ 6%] Built target _ost_geom cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh [ 7%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o -MF CMakeFiles/ost_geom_tests.dir/tests.cc.o.d -o CMakeFiles/ost_geom_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/tests.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/tiff_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/tiff_util.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/img/jpk_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh [ 7%] Built target ost_img_alg_headers make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/base/pymod/CMakeFiles/_ost_base.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh [ 7%] Built target _ost_base cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/info/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./null_data.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/info/pymod/CMakeFiles/_ost_info.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./observable.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./property_id.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/load.hh [ 7%] Built target _ost_info cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_object_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/save.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./peak.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./query_error.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_error.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_prim.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./phase.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./query_state.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_state.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_source.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./physical_units.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./residue_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point_list.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./swap_util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./residue_prop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_box.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_utils.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./input.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/event_button.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./residue_view.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_exception.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./progress.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./convert.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./spatial_organizer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./selection.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./size.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./formatted_line.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./surface.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./surface_builder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./value_util.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./builder.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./vecmat.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./surface_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_handle.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_info.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./surface_prop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_include.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh [ 7%] Built target ost_img_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glext_include.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_profile.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./transfer_connectivity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_mode.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./query_view_wrapper.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./material.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bounding_box.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transform.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/base/src/CMakeFiles/ost_img.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./module_config.hh [ 10%] Built target ost_img cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_writer.hh [ 10%] Built target ost_mol_headers make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save_entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_entity.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh [ 10%] Built target ost_gfx_headers cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/info_panel.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_surface.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/img2qt.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/base/pymod/CMakeFiles/_ost_img.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh [ 11%] Built target _ost_img cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_str.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./omf.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh make[4]: Nothing to be done for 'modules/mol/base/src/CMakeFiles/ost_mol.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh make[4]: Nothing to be done for 'modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh [ 17%] Built target ost_mol make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake "--color=" [ 21%] Built target ost_img_alg make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/depend make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/DependInfo.cmake "--color=" [ 21%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -MF CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/base/tests/test_generic_property.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/load.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load.hh [ 21%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_atom_groups.cc cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/base/src/CMakeFiles/ost_seq.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./seq/save.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save.hh [ 22%] Built target ost_seq make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/load_map.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_map.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/image_format.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./image_format.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./admin.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 24%] Built target ost_seq_alg cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./module_config.hh [ 24%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -MF CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/base/tests/test_string_ref.cc make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_area.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./perspective.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./scene_selection.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./main_window.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_window.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh [ 26%] Built target _ost_mol make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/db/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./thin_splitter.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/tiff_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./tiff_util.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget.hh make[4]: Nothing to be done for 'modules/db/src/CMakeFiles/ost_db.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/io/src/./img/jpk_util.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/io/./jpk_util.hh [ 27%] Built target ost_db cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget_geom_handler.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget_pool.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_pool.hh cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget_registry.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_registry.hh [ 27%] Built target ost_io_headers make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./widget_state_saver.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/bindings/src/CMakeFiles/ost_bindings.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/modules/gui/src/./file_loader.hh /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_loader.hh [ 28%] Built target _ost_img_alg make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests.dir/DependInfo.cmake "--color=" [ 28%] Built target ost_bindings make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 28%] Built target ost_gui_headers make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/depend make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/DependInfo.cmake "--color=" [ 28%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. 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-I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests/test_fft.cc [ 30%] Linking CXX executable ../../../tests/ost_geom_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests && 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_delete.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_delete.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_geom_tests.dir/link.d CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o CMakeFiles/ost_geom_tests.dir/tests.cc.o -o ../../../tests/ost_geom_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 30%] Built target ost_geom_tests make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 30%] Built target _ost_seq make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/conop/src/CMakeFiles/ost_conop.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 32%] Built target ost_conop make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/db/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/db/pymod/CMakeFiles/_ost_db.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 32%] Built target _ost_db make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake "--color=" [ 32%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests/test_fill.cc [ 32%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o -MF CMakeFiles/ost_img_tests.dir/test_index.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_index.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/tests/test_index.cc [ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_entity.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 35%] Built target ost_mol_alg make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 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'/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 35%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/tests/test_amino_acids.cc [ 35%] Linking CXX executable ../../../tests/ost_base_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base_tests.dir/link.txt --verbose=1 [ 36%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests/test_filter.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_base_tests.dir/link.d CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o CMakeFiles/ost_base_tests.dir/tests.cc.o -o ../../../tests/ost_base_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 36%] Built target ost_base_tests make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/geom/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 36%] running checks for module geom cd /build/reproducible-path/openstructure-2.9.0/modules/geom/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_geom_tests Running 25 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 36%] Built target ost_geom_tests_run make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake "--color=" [ 36%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o -MF CMakeFiles/ost_img_tests.dir/test_point.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_point.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/tests/test_point.cc make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 37%] Built target _ost_seq_alg make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gfx/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake "--color=" [ 37%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests/test_histogram.cc [ 37%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -MF CMakeFiles/ost_img_tests.dir/test_sampling.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/base/tests/test_sampling.cc make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gfx/src/CMakeFiles/ost_gfx.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 43%] Built target ost_gfx make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/conop/pymod/CMakeFiles/_ost_conop.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 44%] Built target _ost_conop make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/io/src/CMakeFiles/ost_io.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 50%] Built target ost_io make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 51%] Built target _ost_mol_alg make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 51%] running checks for module base cd /build/reproducible-path/openstructure-2.9.0/modules/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_base_tests Running 5 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 51%] Built target ost_base_tests_run make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gfx/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 51%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests/test_negate.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_seq_tests.dir/link.d CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o 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/usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 52%] Built target ost_seq_tests make -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests 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/usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests/test_stat.cc [ 52%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_view_op.cc [ 53%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/tests.cc In file included from /usr/include/c++/14/string:54, from /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25, from /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21, from /usr/include/boost/test/detail/global_typedef.hpp:15, from /usr/include/boost/test/tools/detail/print_helper.hpp:20, from /usr/include/boost/test/utils/lazy_ostream.hpp:16, from /usr/include/boost/test/tools/context.hpp:19, from /usr/include/boost/test/test_tools.hpp:42, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_chain.cc:23: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_chain.cc:114:18: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:30, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_chain.cc:25: /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/string:42: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_chain.cc:114:18: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_chain.cc:114:18: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_chain.cc:114:18: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ [ 53%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests/test_transform.cc [ 53%] Linking CXX executable ../../../../tests/ost_img_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_tests.dir/link.txt --verbose=1 [ 53%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/tests/test_heuristic_conop.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_img_tests.dir/link.d CMakeFiles/ost_img_tests.dir/test_data.cc.o CMakeFiles/ost_img_tests.dir/test_extent.cc.o CMakeFiles/ost_img_tests.dir/test_image.cc.o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o CMakeFiles/ost_img_tests.dir/test_index.cc.o CMakeFiles/ost_img_tests.dir/test_point.cc.o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o CMakeFiles/ost_img_tests.dir/test_domains.cc.o CMakeFiles/ost_img_tests.dir/test_size.cc.o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o CMakeFiles/ost_img_tests.dir/tests.cc.o -o ../../../../tests/ost_img_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 53%] Built target ost_img_tests make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 53%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_superposition.cc [ 53%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o -MF CMakeFiles/ost_conop_tests.dir/tests.cc.o.d -o CMakeFiles/ost_conop_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/tests/tests.cc [ 53%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests/test_normalizer.cc [ 53%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/tests.cc [ 54%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_consistency_checks.cc In file included from /usr/include/c++/14/string:54, from /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25, from /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21, from /usr/include/boost/test/detail/global_typedef.hpp:15, from /usr/include/boost/test/tools/detail/print_helper.hpp:20, from /usr/include/boost/test/utils/lazy_ostream.hpp:16, from /usr/include/boost/test/tools/context.hpp:19, from /usr/include/boost/test/test_tools.hpp:42, from /usr/include/boost/test/unit_test.hpp:18, from /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:24: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:436:20: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:30, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26, from /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22, from /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:27: /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/string:42: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:436:20: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:436:20: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38, inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:436:20: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ [ 54%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/gfx/tests/test_map_octree.cc [ 54%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_pdb.cc [ 54%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests/tests.cc make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/DependInfo.cmake "--color=" [ 54%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/tests/test_rule_based_conop.cc make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 55%] Built target ost_mol_mm make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 55%] running checks for module seq cd /build/reproducible-path/openstructure-2.9.0/modules/seq/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_seq_tests Running 32 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 55%] Built target ost_seq_tests_run make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_distance_analysis.cc [ 55%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o -MF CMakeFiles/ost_conop_tests.dir/helper.cc.o.d -o CMakeFiles/ost_conop_tests.dir/helper.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/conop/tests/helper.cc [ 55%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_crd.cc [ 55%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_partial_sec_struct_assignment.cc [ 55%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_dcd.cc [ 55%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_sdf.cc In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:140:19: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:140:19: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:140:19: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:365:38, inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_entity.cc:140:19: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ [ 55%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_sdf_v3000.cc [ 55%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_sequence_profile.cc [ 56%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o -MF CMakeFiles/ost_io_tests.dir/test_pir.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_pir.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_pir.cc [ 56%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -MF CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_iomanager.cc [ 56%] Linking CXX executable ../../../../tests/ost_img_alg_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg_tests.dir/link.txt --verbose=1 [ 56%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o -MF CMakeFiles/ost_io_tests.dir/tests.cc.o.d -o CMakeFiles/ost_io_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/tests.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_img_alg_tests.dir/link.d CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_img_alg_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 56%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_merge_pairwise_alignments.cc [ 56%] Built target ost_img_alg_tests make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 58%] Built target _ost_gfx make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake "--color=" make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/io/pymod/CMakeFiles/_ost_io.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 59%] Built target _ost_io make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 59%] running checks for module img cd /build/reproducible-path/openstructure-2.9.0/modules/img/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_img_tests Running 44 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 59%] Built target ost_img_tests_run make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 60%] running checks for module img_alg cd /build/reproducible-path/openstructure-2.9.0/modules/img/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_img_alg_tests Running 25 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 60%] Built target ost_img_alg_tests_run make -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 60%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests/test_interaction.cc [ 60%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests/test_block.cc make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gui/src/CMakeFiles/ost_gui.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 91%] Built target ost_gui make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 92%] Built target _ost_mol_mm make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gui/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build [ 92%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -MF CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_star_parser.cc make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gui/pymod/CMakeFiles/_ost_gui.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 94%] Built target _ost_gui make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost_config cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/bin/ost cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/bin/dng cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/ost_startup.py cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.0/scripts/dng_startup.py /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages//ost/dng_startup.py make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 94%] Built target ost_scripts make -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 94%] running checks test_aaindex.py cd /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_aaindex.py" Compound library not available. Some functionality may not work as expected. . ---------------------------------------------------------------------- Ran 1 test in 0.612s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 94%] Built target test_aaindex.py_run make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/test_stutil.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 94%] running checks test_stutil.py cd /build/reproducible-path/openstructure-2.9.0/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/base/tests/test_stutil.py" Compound library not available. Some functionality may not work as expected. ...... ---------------------------------------------------------------------- Ran 6 tests in 0.022s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 94%] Built target test_stutil.py_run make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/test_table.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 94%] running checks test_table.py cd /build/reproducible-path/openstructure-2.9.0/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/base/tests/test_table.py" [ 94%] Linking CXX executable ../../../tests/ost_gfx_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx_tests.dir/link.txt --verbose=1 Compound library not available. Some functionality may not work as expected. [ 95%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests/test_block_modifiers.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_gfx_tests.dir/link.d CMakeFiles/ost_gfx_tests.dir/tests.cc.o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -o ../../../tests/ost_gfx_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.9.0 ../../../stage/lib/libost_io.so.2.9.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.9.0 ../../../stage/lib/libost_img.so.2.9.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libparasail.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 95%] Built target ost_gfx_tests make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/test_log.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 96%] running checks test_log.py cd /build/reproducible-path/openstructure-2.9.0/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/base/tests/test_log.py" Compound library not available. Some functionality may not work as expected. .... ---------------------------------------------------------------------- Ran 4 tests in 0.002s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 96%] Built target test_log.py_run make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 96%] running checks test_msms.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_msms.py" Compound library not available. Some functionality may not work as expected. .......................[ 96%] Linking CXX executable ../../../../tests/ost_mol_alg_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg_tests.dir/link.txt --verbose=1 [ 96%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_mmcif_reader.cc Could not find msms executable: ignoring unit tests make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 96%] Built target test_msms.py_run make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] running checks test_clustalw.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_clustalw.py" Compound library not available. Some functionality may not work as expected. [ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_mmcif_writer.cc [ 97%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests/test_topology.cc ./usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_mol_alg_tests.dir/link.d CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -o ../../../../tests/ost_mol_alg_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_io.so.2.9.0 ../../../../stage/lib/libost_mol_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.9.0 ../../../../stage/lib/libost_db.so.2.9.0 ../../../../stage/lib/libost_seq.so.2.9.0 ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] Built target ost_mol_alg_tests make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/DependInfo.cmake "--color=" ...............make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] running checks test_hhblits.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_hhblits.py" Compound library not available. Some functionality may not work as expected. /usr/lib/python3.12/unittest/case.py:589: ResourceWarning: unclosed file <_io.BufferedReader name='/build/reproducible-path/openstructure-2.9.0/modules/base/tests/testfiles/enrichment-out.png'> if method() is not None: ResourceWarning: Enable tracemalloc to get the object allocation traceback .No HHblits installation found: skip unit tests .make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] Built target test_hhblits.py_run make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] running checks test_blast.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_blast.py" /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_blast.py:81: SyntaxWarning: invalid escape sequence '\d' re_v = re.compile('\d+\.\d+\.\d+') .Compound library not available. Some functionality may not work as expected. ..... /usr/lib/python3.12/unittest/case.py:589: ResourceWarning: unclosed file <_io.BufferedReader name='/build/reproducible-path/openstructure-2.9.0/modules/base/tests/testfiles/roc-out.png'> if method() is not None: ResourceWarning: Enable tracemalloc to get the object allocation traceback ---------------------------------------------------------------------- Ran 7 tests in 9.856s OK .[ 97%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_sequence_identity.cc Could not find blast executable: ignoring unit tests make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] Built target test_clustalw.py_run [ 97%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/tests.cc make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] Built target test_blast.py_run make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' /usr/lib/python3.12/unittest/case.py:589: ResourceWarning: unclosed file <_io.BufferedReader name='/build/reproducible-path/openstructure-2.9.0/modules/base/tests/testfiles/roc-same-val-out.png'> if method() is not None: ResourceWarning: Enable tracemalloc to get the object allocation traceback .......[ 97%] running checks test_kclust.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_kclust.py" ................................... ---------------------------------------------------------------------- Ran 83 tests in 18.701s OK Compound library not available. Some functionality may not work as expected. Could not find kClust executable: ignoring unit tests make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] Built target test_kclust.py_run make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] running checks test_naccess.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_naccess.py" Compound library not available. Some functionality may not work as expected. Could not find NACCESS, could not test binding... make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] Built target test_naccess.py_run make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/DependInfo.cmake "--color=" [ 97%] Built target test_table.py_run make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/depend make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] running checks test_cadscore.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_cadscore.py" [ 97%] running checks test_tmtools.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_tmtools.py" Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. [ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_mmcif_info.cc s... ---------------------------------------------------------------------- Ran 3 tests in 3.684s OK Could not find tmalign executable: ignoring unit tests Could not find tmalign executable: ignoring unit tests make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 97%] Built target test_tmtools.py_run make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_ialign.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_ialign.py" Compound library not available. Some functionality may not work as expected. [ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_img.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_img.cc . ---------------------------------------------------------------------- Ran 1 test in 0.420s OK Could not find ialign master perl script: ignoring unit tests make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_ialign.py_run make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_lga.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_lga.py" Compound library not available. Some functionality may not work as expected. [ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -MF CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_exceptions.cc . ---------------------------------------------------------------------- Ran 1 test in 0.493s OK Could not find lga executable: ignoring unit tests make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_lga.py_run make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_hbplus.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_hbplus.py" Compound library not available. Some functionality may not work as expected. [ 98%] Linking CXX executable ../../../../tests/ost_mol_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_tests.dir/link.txt --verbose=1 Could not find hbplus, could not test binding... make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_hbplus.py_run make -f modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_dockq.py cd /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/bindings/tests/test_dockq.py" make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests/CMakeFiles/test_processor.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_processor.py cd /build/reproducible-path/openstructure-2.9.0/modules/conop/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/conop/tests/test_processor.py" Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_mol_tests.dir/link.d CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o CMakeFiles/ost_mol_tests.dir/test_query.cc.o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o CMakeFiles/ost_mol_tests.dir/test_view.cc.o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o CMakeFiles/ost_mol_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target ost_mol_tests make -f modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_complib.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests/CMakeFiles/test_complib.py_run.dir/DependInfo.cmake "--color=" . ---------------------------------------------------------------------- Ran 1 test in 0.001s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_complib.py cd /build/reproducible-path/openstructure-2.9.0/modules/conop/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/conop/tests/test_complib.py" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Could not find DockQ.py, could not test binding... [ 98%] Built target test_processor.py_run make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/db/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. [ 98%] running checks test_linear_db.py cd /build/reproducible-path/openstructure-2.9.0/modules/db/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/db/tests/test_linear_db.py" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_dockq.py_run make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/geom/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/geom/tests/CMakeFiles/test_geom.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. [ 98%] running checks test_geom.py cd /build/reproducible-path/openstructure-2.9.0/modules/geom/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/geom/tests/test_geom.py" ../build/reproducible-path/openstructure-2.9.0/modules/conop/tests/test_complib.py:71: UserWarning: Compound library not available. Some functionality may not work as expected. warnings.warn("Compound library not available. Some functionality may not work as expected.") .... ---------------------------------------------------------------------- Ran 3 tests in 0.006s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_linear_db.py_run .make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gfx/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/DependInfo.cmake "--color=" .... ---------------------------------------------------------------------- Ran 8 tests in 1.210s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks for module gfx cd /build/reproducible-path/openstructure-2.9.0/modules/gfx/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_gfx_tests [ 98%] Built target test_complib.py_run make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/gfx/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/DependInfo.cmake "--color=" Running 13 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target ost_gfx_tests_run make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/depend .[ 98%] running checks test_gfx.py make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/DependInfo.cmake "--color=" ....cd /build/reproducible-path/openstructure-2.9.0/modules/gfx/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/gfx/tests/test_gfx.py" ... ---------------------------------------------------------------------- Ran 8 tests in 0.046s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_io_pdb.py cd /build/reproducible-path/openstructure-2.9.0/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_pdb.py" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_geom.py_run make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build Compound library not available. Some functionality may not work as expected. make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. [ 98%] running checks test_io_mmcif.py cd /build/reproducible-path/openstructure-2.9.0/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_mmcif.py" Compound library not available. Some functionality may not work as expected. ...... ---------------------------------------------------------------------- Ran 6 tests in 0.076s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' ..[ 98%] Built target test_gfx.py_run ..s ---------------------------------------------------------------------- Ran 5 tests in 0.127s OK (skipped=1) .No citation for identifier '1' found. Couldn't set author list. SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X. ..[ 98%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests/test_forcefield.cc SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X. [ 98%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests/test_simulation.cc make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_io_pdb.py_run make -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_io_omf.py cd /build/reproducible-path/openstructure-2.9.0/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_omf.py" Compound library not available. Some functionality may not work as expected. No compound library available. Ignoring test_stereochemistry.py tests. make -f modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_io_omf.py_run make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/DependInfo.cmake "--color=" [ 98%] running checks test_io_sdf.py cd /build/reproducible-path/openstructure-2.9.0/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_sdf.py" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks for module mol cd /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_mol_tests Running 71 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. [ 98%] Built target ost_mol_tests_run make -f modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build.make modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build.make modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_invalid.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/base/tests/test_invalid.py" Compound library not available. Some functionality may not work as expected. ....... ---------------------------------------------------------------------- Ran 7 tests in 0.061s OK ..... ---------------------------------------------------------------------- Ran 5 tests in 0.117s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_invalid.py_run make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks for module mol_alg cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_mol_alg_tests make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_io_sdf.py_run make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/DependInfo.cmake "--color=" .make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_pdbize.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_pdbize.py" Running 4 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X. unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X' [ 98%] Built target ost_mol_alg_tests_run make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/depend Compound library not available. Some functionality may not work as expected. make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_convenient_superpose.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_convenient_superpose.py" Compound library not available. Some functionality may not work as expected. ........ ---------------------------------------------------------------------- Ran 8 tests in 0.089s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_img.cc: In member function 'void io::test_io_img::test_method()': /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_img.cc:105:10: warning: variable 'failed' set but not used [-Wunused-but-set-variable] 105 | bool failed=false; | ^~~~~~ /build/reproducible-path/openstructure-2.9.0/modules/io/tests/test_io_img.cc:130:10: warning: variable 'failed' set but not used [-Wunused-but-set-variable] 130 | bool failed=false; | ^~~~~~ [ 98%] Built target test_pdbize.py_run make -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_hbond.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_hbond.py" .Compound library not available. Some functionality may not work as expected. .SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X. No SEQRES found for chain 'A'. Most likely the entity_poly_seq category was missing from the input file. No SEQRES found for chain 'B'. Most likely the entity_poly_seq category was missing from the input file. No SEQRES found for chain 'C'. Most likely the entity_poly_seq category was missing from the input file. .. ---------------------------------------------------------------------- Ran 2 tests in 0.124s OK ......s ---------------------------------------------------------------------- Ran 12 tests in 15.023s OK (skipped=1) make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_hbond.py_run make -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_accessibility.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_accessibility.py" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. [ 98%] Built target test_io_mmcif.py_run make -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_sec_struct.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_sec_struct.py" Compound library not available. Some functionality may not work as expected. [ 98%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests/tests.cc ss ---------------------------------------------------------------------- Ran 1 test in 0.013s OK (skipped=1) .make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_sec_struct.py_run make -f modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_lddt.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_lddt.py" Compound library not available. Some functionality may not work as expected. ...make -f modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_qsscore.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_qsscore.py" Compound library not available. Some functionality may not work as expected. No compound library available. Ignoring test_lddt.py tests. make -f modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/DependInfo.cmake "--color=" make -f modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_stereochemistry.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_stereochemistry.py" .[ 98%] running checks test_contact_score.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_contact_score.py" Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. .make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_lddt.py_run make -f modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_biounit.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_biounit.py" Compound library not available. Some functionality may not work as expected. No compound lib available. Ignoring test_qsscore.py tests. No compound lib available. Ignoring contact_score.py tests. No compound library available. Ignoring test_stereochemistry.py tests. .Ignoring struct_ref_seq_dif with missing data item seq_num Ignoring struct_ref_seq_dif with missing data item seq_num SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' unknown residue 'ACE' in SEQRES record. Setting one-letter-code to 'X' [ 98%] Built target test_qsscore.py_run make -f modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/DependInfo.cmake "--color=" . ---------------------------------------------------------------------- Ran 9 tests in 19.553s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/build make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_contact_score.py_run make -f modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/depend [ 98%] running checks test_ost_dockq.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_ost_dockq.py" [ 98%] Built target test_stereochemistry.py_run make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/DependInfo.cmake "--color=" make -f modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/build.make modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/build make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/build.make modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] running checks test_antechamber.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests/test_antechamber.py" [ 98%] running checks test_bblddt.py cd /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/mol/alg/tests/test_bblddt.py" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [ 98%] Built target test_convenient_superpose.py_run make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/DependInfo.cmake "--color=" Compound library not available. Some functionality may not work as expected. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' . ---------------------------------------------------------------------- Ran 1 test in 2.062s OK [100%] running checks test_seq.py cd /build/reproducible-path/openstructure-2.9.0/modules/seq/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/seq/base/tests/test_seq.py" Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target test_biounit.py_run make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/depend Compound library not available. Some functionality may not work as expected. make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' .[100%] running checks test_renumber.py .cd /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_renumber.py" . ---------------------------------------------------------------------- Ran 3 tests in 0.257s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/DependInfo.cmake "--color=" [100%] Built target test_antechamber.py_run make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/DependInfo.cmake "--color=" Compound library not available. Some functionality may not work as expected. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] running checks test_global_align.py cd /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_global_align.py" [100%] running checks test_local_align.py cd /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_local_align.py" .............. ---------------------------------------------------------------------- Ran 14 tests in 0.107s OK Compound library not available. Some functionality may not work as expected. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. [100%] Built target test_seq.py_run make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' No compound lib available. Ignoring test_bblddt.py tests. [100%] running checks test_semiglobal_align.py cd /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_semiglobal_align.py" ........ ---------------------------------------------------------------------- Ran 8 tests in 0.507s OK Compound library not available. Some functionality may not work as expected. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target test_bblddt.py_run make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/DependInfo.cmake "--color=" [100%] Built target test_renumber.py_run make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/DependInfo.cmake "--color=" ... ---------------------------------------------------------------------- Ran 3 tests in 0.046s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] running checks test_weight_matrix.py cd /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_weight_matrix.py" . ---------------------------------------------------------------------- Ran 1 test in 4.609s OK [100%] running checks test_alignment_from_chain_view.py cd /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib/python3.12/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests/test_alignment_from_chain_view.py" ... ---------------------------------------------------------------------- Ran 3 tests in 0.052s OK Compound library not available. Some functionality may not work as expected. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. [100%] Built target test_ost_dockq.py_run make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target test_global_align.py_run make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' . ---------------------------------------------------------------------- Ran 1 test in 0.037s OK [100%] Built target test_local_align.py_run . ---------------------------------------------------------------------- Ran 1 test in 0.040s OK make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' .. ---------------------------------------------------------------------- Ran 2 tests in 0.001s OK [100%] Built target test_alignment_from_chain_view.py_run make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target test_semiglobal_align.py_run make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target test_weight_matrix.py_run [100%] Linking CXX executable ../../../tests/ost_conop_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop_tests.dir/link.txt --verbose=1 . ---------------------------------------------------------------------- Ran 2 tests in 28.034s OK (skipped=1) Could not find NACCESS, could not compare Accessiblity function... /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_conop_tests.dir/link.d CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o CMakeFiles/ost_conop_tests.dir/tests.cc.o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o CMakeFiles/ost_conop_tests.dir/helper.cc.o -o ../../../tests/ost_conop_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target test_accessibility.py_run [100%] Built target ost_conop_tests make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/conop/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] running checks for module conop cd /build/reproducible-path/openstructure-2.9.0/modules/conop/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_conop_tests Running 18 test cases... unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target ost_conop_tests_run [100%] Linking CXX executable ../../../../tests/ost_seq_alg_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_seq_alg_tests.dir/link.d CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_alg_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_io.so.2.9.0 ../../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../../stage/lib/libost_seq_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_conop.so.2.9.0 ../../../../stage/lib/libost_db.so.2.9.0 ../../../../stage/lib/libost_seq.so.2.9.0 ../../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target ost_seq_alg_tests make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] running checks for module seq_alg cd /build/reproducible-path/openstructure-2.9.0/modules/seq/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_seq_alg_tests Running 19 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target ost_seq_alg_tests_run . ---------------------------------------------------------------------- Ran 2 tests in 155.262s OK (skipped=1) make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target test_cadscore.py_run [100%] Linking CXX executable ../../../../tests/ost_mol_mm_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_mm_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_mol_mm_tests.dir/link.d CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_mm_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_mol_mm.so.2.9.0 ../../../../stage/lib/libost_io.so.2.9.0 ../../../../stage/lib/libost_mol_alg.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 ../../../../stage/lib/libost_conop.so.2.9.0 ../../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../../stage/lib/libost_seq.so.2.9.0 ../../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../../stage/lib/libost_img_alg.so.2.9.0 ../../../../stage/lib/libost_img.so.2.9.0 ../../../../stage/lib/libost_info.so.2.9.0 ../../../../stage/lib/libost_base.so.2.9.0 ../../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libOpenMM.so make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target ost_mol_mm_tests make -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] running checks for module mol_mm cd /build/reproducible-path/openstructure-2.9.0/modules/mol/mm/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_mol_mm_tests [100%] Linking CXX executable ../../../tests/ost_io_tests cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file,CMakeFiles/ost_io_tests.dir/link.d CMakeFiles/ost_io_tests.dir/test_clustal.cc.o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o CMakeFiles/ost_io_tests.dir/test_pir.cc.o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o CMakeFiles/ost_io_tests.dir/tests.cc.o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -o ../../../tests/ost_io_tests -L/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_io.so.2.9.0 ../../../stage/lib/libost_mol_alg.so.2.9.0 ../../../stage/lib/libost_conop.so.2.9.0 ../../../stage/lib/libost_db.so.2.9.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.0 ../../../stage/lib/libost_seq.so.2.9.0 ../../../stage/lib/libost_mol.so.2.9.0 /usr/lib/x86_64-linux-gnu/libparasail.so ../../../stage/lib/libost_img_alg.so.2.9.0 ../../../stage/lib/libost_img.so.2.9.0 ../../../stage/lib/libost_info.so.2.9.0 ../../../stage/lib/libost_base.so.2.9.0 ../../../stage/lib/libost_geom.so.2.9.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target ost_io_tests make -f modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests_run.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] running checks for module io cd /build/reproducible-path/openstructure-2.9.0/modules/io/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/stage /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/tests/ost_io_tests Running 13 test cases... *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target ost_mol_mm_tests_run Running 182 test cases... unable to open database file WARNING: skipping SEQRES import unit test. Compound lib is required unable to open database file WARNING: skipping mmcif_entity_poly_tests unit test. Compound library is required unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file *** No errors detected make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target ost_io_tests_run make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0 /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/CMakeFiles/check.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' [100%] Built target check make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/openstructure-2.9.0' dh_auto_install cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/openstructure-2.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openstructure-2.9.0 -B/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_base.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_base.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_base.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_base.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/export_helper/generic_property_def.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/export_helper/pair_to_tuple_conv.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/export_helper/vec_to_list_conv.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/test_utils/compare_files.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./generic_property.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./integrity_error.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./invalid_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./ptr_observer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./log.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./log_sink.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./profile.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./dyn_cast.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./stdint.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./stdint_msc.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./range.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./units.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./message.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./platform.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./string_ref.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./pod_vector.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./fixed_string.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./tri_matrix.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./boost_filesystem_helper.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./paged_array.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/_ost_base.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/_ost_base.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./settings.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./stutil.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./table.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./table_selector.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./xmlrunner.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./testutils.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./settings.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./stutil.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./table.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./table_selector.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./xmlrunner.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/./testutils.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_bindings.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_bindings.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_bindings.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_bindings.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/bindings/./wrap_tmalign.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/_ost_bindings.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/_ost_bindings.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./lga.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./hbplus.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./msms.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./tmtools.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./dssp.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./clustalw.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./utils.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./naccess.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./hhblits.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./hhblits2.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./hhblits3.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./blast.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./cadscore.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./kclust.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./ialign.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./mmseqs2.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./dockq.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./lga.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./hbplus.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./msms.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./tmtools.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./dssp.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./clustalw.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./utils.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./naccess.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./hhblits.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./hhblits2.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./hhblits3.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./blast.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./cadscore.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./kclust.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./ialign.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./mmseqs2.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/bindings/./dockq.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./dllexport.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/./version.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_conop.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_conop.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_conop.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_conop.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./conop.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./processor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./amino_acids.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./diag.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./model_check.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./heuristic.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./compound.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./compound_lib.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./rule_based.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./minimal_compound_lib.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./compound_lib_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/conop/./ring_finder.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/bin/chemdict_tool -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/bin/chemdict_tool" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/conop/_ost_conop.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/conop/_ost_conop.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/conop/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/conop/./cleanup.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/conop/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/conop/./cleanup.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_db.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_db.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_db.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_db.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/db/./sqlite_wrap.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/db/./sqlite_conv.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/db/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/db/./linear_indexer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/db/./binary_container.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/db/./extract_data_helper.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/db/_ost_db.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/db/_ost_db.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/db/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/db/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_geom.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_geom.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_geom.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_geom.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/export_helper/vector.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./def.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./exc.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./geom.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./mat.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./mat2.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./mat3.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./mat4.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./vec.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./vec2.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./vec3.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./vec4.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./vecmat_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./vecmat2_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./vecmat3_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./vecmat4_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./circular_iterator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./constants.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./composite.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./composite2.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./composite3.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./composite_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./composite2_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./composite3_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./aligned_cuboid.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./vec_mat_predicates.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./quat.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./transform.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./point_cloud.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/geom/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/geom/_ost_geom.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/geom/_ost_geom.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/geom/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/geom/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_gfx.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_gfx.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_gfx.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_gfx.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen_s.hh -- Up-to-date: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen_s.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/map_iso_spec.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/map_octree.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/octree_isocont.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/cartoon_renderer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/custom_renderer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/cpk_renderer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/debug_renderer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/simple_renderer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/sline_renderer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/trace_renderer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/line_trace_renderer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/backbone_trace.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/entity_detail.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/entity_renderer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/trace_renderer_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/connect_renderer_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/mapped_property.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/entity_renderer_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/tabulated_trig.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/impl/fast_spheres.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/render_options/render_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/render_options/line_render_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/render_options/custom_render_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/render_options/cpk_render_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/render_options/simple_render_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/render_options/sline_render_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/render_options/line_trace_render_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/render_options/cartoon_render_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/render_options/trace_render_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/color_ops/color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/color_ops/by_element_color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/color_ops/by_chain_color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/color_ops/uniform_color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/color_ops/gradient_color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/color_ops/entity_view_color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/color_ops/basic_gradient_color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/color_ops/gradient_level_color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/color_ops/map_handle_color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./render_pass.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./bitmap_io.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./collada_exporter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./color.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./entity.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./entity_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gl_helper.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx_node_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx_node_visitor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx_object_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx_object.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx_object_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx_prim.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./symmetry_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gfx_test_object.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./glwin_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./input.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./prim_list.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./scene.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./selection.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./surface.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./texture.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./vertex_array.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./vertex_array_helper.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./scene_observer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gl_include.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./glext_include.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./render_mode.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./material.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gradient.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gradient_manager.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./primitives.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./povray_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./povray.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./exporter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./exporter_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./gost_exporter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./map_handle_color_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./map_iso.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./map_slab.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gfx/./map_iso_prop.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/textures/test_texture.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/textures/glyph_texture.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gfx/_ost_gfx.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gfx/_ost_gfx.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gfx/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gfx/./py_gfx_obj.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gfx/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gfx/./py_gfx_obj.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/scene/gradients.xml -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_gui.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_gui.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_gui.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_gui.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/tool.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/tool_option_group.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/tool_options.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/tool_bar.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/selection_tool.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/measure_tool.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/tool_option.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/tool_manager.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/tool_options_widget.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/manipulator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/tool_options_win.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/mouse_event.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/tools/map_tool.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/align_properties_painter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/base_row.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/background_painter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/conservation_painter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/painter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/secstr_row.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/seq_secstr_painter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/seq_selection_painter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/seq_text_painter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_delegate.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_model.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_row.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_search_bar.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_table_view.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_viewer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/tick_painter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/title_row.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/alignment_view_object.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/base_view_object.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_view_object.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/main_thread_runner.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/output_redirector.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/completer_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/dir_model.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/gutter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/path_completer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_context_parser.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_completer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_shell.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_shell_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_shell_widget.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_tokenizer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_syntax_highlighter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/text_logger.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_interpreter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_interpreter_worker.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/python_shell_text_document_layout.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/shell_history.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/state_machine.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/state.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/transition.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/python_shell/transition_guard.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/button_bar.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/drop_box.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/panel_bar.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/panel_manager.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/bottom_bar.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/button_box.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/event_button.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/panel_widget_container.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/panel_bar_widget_holder.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/side_bar.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/splitter_panel_bar.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/panels/tabbed_panel_bar.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/context_menu.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/current_selection_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/custom_part_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/entity_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/entity_part_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/gfx_scene_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/label_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/root_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/render_mode_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/render_modes_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/scene_node.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/scene_win.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/scene_win/scene_win_model.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/messages/message_widget.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/messages/message_box_widget.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/messages/log_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/argand.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer_panel.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer_panel_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/draw_overlay.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/drawing_functions.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/fft_panel.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/info_panel.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/img2qt.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/mask_overlay.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/null_overlay.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_base_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_gui.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_observer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/pointlist_overlay.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/pointlist_overlay_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/strategies.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/strategies_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/data_viewer/viewer_normalizer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./file_browser.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./file_type_dialog.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./file_viewer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./gl_canvas.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./gl_win.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./scene_menu.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./gosty_app.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./admin.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./main.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./main_area.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./perspective.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./scene_selection.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./main_window.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./dock_widget.hh -- Up-to-date: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./dock_widget.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./thin_splitter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./widget.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./widget_geom_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./widget_pool.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./widget_registry.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./widget_state_saver.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/gui/./file_loader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/openstructure/libexec/gosty -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/openstructure/libexec/gosty" to "$ORIGIN/../../lib" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/add_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/close_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/critical_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/delete_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/distance_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/find_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/information_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/map_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/menubar_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/rigid_body_manipulator_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/selection_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/show_sidebar_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/site_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/split_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/warning_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/icons/refresh.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/gui/images/logo-small.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/_ost_gui.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/_ost_gui.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/color_options_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/color_select_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/combo_options_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/cpk_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/custom_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/gradient_editor_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/gradient_info_handler.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/gradient_list_model.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/gradient_preset_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/hsc_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/immutable_gradient_info_handler.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/immutable_preset_info_handler.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/init_inspector.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/inspector_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/map_level_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/remote.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_editor_list_model.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_editor_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_info_handler.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_list_model.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/render_mode_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/render_op.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/render_options_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/scene_observer_impl.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/scene_selection_helper.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/simple_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/sline_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/toolbar_options_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/trace_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/tube_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/uniform_color_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/visibility_op.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/line_trace_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/wireframe_widget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/query_editor.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/color_options_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/color_select_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/combo_options_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/cpk_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/custom_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/gradient_editor_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/gradient_info_handler.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/gradient_list_model.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/gradient_preset_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/hsc_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/immutable_gradient_info_handler.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/immutable_preset_info_handler.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/init_inspector.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/inspector_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/map_level_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/remote.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_editor_list_model.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_editor_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_info_handler.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_list_model.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/preset_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/render_mode_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/render_op.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/render_options_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/scene_observer_impl.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/scene_selection_helper.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/simple_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/sline_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/toolbar_options_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/trace_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/tube_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/uniform_color_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/visibility_op.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/line_trace_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/wireframe_widget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/scene/query_editor.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/termuse.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/superpositiondialog.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/init.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/menu.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/termuse.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/superpositiondialog.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/init.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/dng/menu.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./init_context_menu.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./init_menubar.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./init_spacenav.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./init_splash.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./trajectory_viewer.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./helpwidget.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./table.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./gosty_startup.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./init_context_menu.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./init_menubar.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./init_spacenav.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./init_splash.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./trajectory_viewer.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./helpwidget.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./table.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/gui/./gosty_startup.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/scene/presets.xml -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/scene/icons/color_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/scene/icons/preset_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/scene/icons/render_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/scene/icons/tool_icon.png -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_img.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_img.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_img.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_img.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/raster_image/raster_image.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/dispatch.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_base_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_def.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_factory.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_frequency_domain.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_half_frequency_domain.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_spatial_domain.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_visitor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_algorithm.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/image_state_visitor_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/index.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/type_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/image_state/value_holder.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./algorithm.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./circle_mask.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./composite_mask.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./data_algorithm.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./data_observer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./data_types.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./data.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./debug.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./dllexport.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./extent_iterator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./extent_mask.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./extent.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./image_factory.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./image_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./image_handle_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./image_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./image_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./image_list.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./image_state_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./image_state.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./image.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./inverted_mask.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./map.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./mask_base_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./mask_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./mask_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./mask_visitor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./mask.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./normalizer_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./normalizer_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./null_data.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./observable.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./paste_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./peak.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./phase.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./physical_units.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./pixel_sampling.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./point_list.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./point.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./polygon_mask.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./progress.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./size.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./spherical_mask.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./util.cc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./util.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./value_util.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./vecmat.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/./mask_info_convert.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/img/_ost_img.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/img/_ost_img.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/img/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/img/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_img_alg.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_img_alg.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_img_alg.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_img_alg.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./anisotropic.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./auto_correlate.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./clear.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./clip_min_max.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./conjugate.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./convolute.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./correlate.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./cross_correlate.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./density_slice.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./dft.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./fft.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./fftw_helper.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./fill.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./filter.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./fourier_filters.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./gaussian_gradient_magnitude.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./gaussian.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./gaussian_laplacian.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./highest_peak_search_3d.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./histogram.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./line_iterator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./local_sigma_threshold.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./mask_image.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./negate.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./normalizer_factory.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./norm.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./normalizer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./norm_linear.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./norm_log.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./norm_od.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./power_spectrum.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./randomize.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./smooth_mask_image.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./stat.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./stat_accumulator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./stat_min_max.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./threshold.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./transcendentals.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./transform.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./transform_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./alg_transform.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./alg_mirror.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./alg_shift.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./discrete_shrink.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./transformation_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./transformations.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./fractional_shift.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./polar.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./line_average.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/img/alg/./rscrosscorr.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/img/alg/_ost_img_alg.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/img/alg/_ost_img_alg.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/img/alg/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/img/alg/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_info.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_info.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_info.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_info.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_error.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_group.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_item.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_path.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_set.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_visitor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./info_verbose_visitor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./item_type.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./geom_info_conversion.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/info/./item_type_cast.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/info/_ost_info.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/info/_ost_info.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/info/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/info/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_io.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_io.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_io.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_io.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/chemdict_parser.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/star_parser.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/star_writer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/mmcif_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/mmcif_info.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/mmcif_writer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/io_profile.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/dcd_io.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/entity_io_crd_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/entity_io_pqr_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/entity_io_mae_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/entity_io_mmcif_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/entity_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/pdb_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/entity_io_pdb_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/pdb_writer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/entity_io_sdf_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/sdf_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/sdf_writer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/save_entity.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/load_entity.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/surface_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/load_surface.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/surface_io_msms_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/pdb_str.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/sdf_str.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/mmcif_str.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/stereochemical_params_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/mol/omf.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/load_map.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_df3_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/image_format.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_dx_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_spi_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_situs_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_mrc_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_dat_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_ipl_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_jpk_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_nanoscope_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_png_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_dm3_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/map_io_tiff_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/tiff_util.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/img/jpk_util.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/sequence_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/fasta_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/pir_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/promod_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/profile_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/hhm_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/pssm_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/clustal_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/load.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/seq/save.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./binary_data_sink.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./io_manager.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./binary_data_source.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./container_serialization.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./swap_util.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./io_utils.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./io_exception.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./convert.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./converting_streams.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./formatted_line.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./chemdict_parser.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./star_parser.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./star_writer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./mmcif_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./mmcif_info.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./mmcif_writer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./io_profile.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./dcd_io.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./entity_io_crd_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./entity_io_pqr_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./entity_io_mae_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./entity_io_mmcif_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./entity_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./pdb_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./entity_io_pdb_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./pdb_writer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./entity_io_sdf_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./sdf_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./sdf_writer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./save_entity.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./load_entity.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./surface_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./load_surface.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./surface_io_msms_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./pdb_str.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./sdf_str.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./mmcif_str.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./stereochemical_params_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./omf.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./sequence_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./fasta_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./pir_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./promod_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./profile_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./hhm_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./pssm_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./clustal_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./load.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./save.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./load_map.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_df3_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./image_format.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_dx_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_spi_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_situs_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_mrc_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_dat_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_ipl_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_jpk_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_nanoscope_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_png_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_dm3_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./map_io_tiff_handler.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./tiff_util.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/io/./jpk_util.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/io/_ost_io.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/io/_ost_io.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/io/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/io/./remote.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/io/./repository.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/io/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/io/./remote.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/io/./repository.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/pointer_iterator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/atom_group.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/atom_prop.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/atom_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/atom_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/chain_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/chain_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/connector_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/connector_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/dihedral.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/entity_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/entity_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/fragment_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/fragment_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/query_ast.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/query_ast_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/query_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/query_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/residue_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/residue_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/surface_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/surface_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/torsion_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/impl/torsion_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./atom_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./atom_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./atom_view.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./bond_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./bond_table.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./chain_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./chain_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./chain_view.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./chain_type.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./chem_class.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./chem_type.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./coord_group.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./coord_source.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./in_mem_coord_source.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./coord_frame.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./editor_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./editor_type_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./mol.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./entity_base.hh -- Up-to-date: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./entity_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./entity_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./entity_observer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./entity_observer_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./entity_property_mapper.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./entity_view.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./entity_visitor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./entity_visitor_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./handle_type_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./ics_editor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./not_connected_error.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./property_id.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./query.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./query_error.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./query_state.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./residue_base.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./residue_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./residue_prop.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./residue_view.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./sec_structure.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./spatial_organizer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./surface.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./surface_builder.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./builder.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./surface_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./surface_prop.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./torsion_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./transfer_connectivity.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./query_view_wrapper.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./view_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./view_type_fw.hh -- Up-to-date: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./view_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./xcs_editor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./bounding_box.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./transform.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/_ost_mol.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/_ost_mol.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/bin/lddt -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/bin/lddt" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol_alg.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol_alg.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol_alg.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol_alg.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./svd_superpose.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./sec_structure_segments.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./local_dist_diff_test.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./distance_test_common.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./distance_rmsd_test.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./superpose_frames.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./filter_clashes.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./construct_cbeta.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./clash_score.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./trajectory_analysis.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./structure_analysis.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./consistency_checks.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./pdbize.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./adjacency_bitmap.hh -- Up-to-date: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./consistency_checks.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./contact_overlap.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./domain_find.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./similarity_matrix.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./accessibility.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./sec_struct.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./nonstandard.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./molck.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./find_membrane.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./entity_to_density.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./biounit.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/alg/./gdt.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/atom_scattering_properties.txt -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/stereo_chemical_props.txt -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/_ost_mol_alg.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/_ost_mol_alg.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./views.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./superpose.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./qsscoring.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./trajectory_analysis.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./structure_analysis.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./helix_kinks.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./hbond.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./lddt.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./qsscore.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./scoring.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./chain_mapping.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./stereochemistry.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./dockq.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./contact_score.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./ligand_scoring.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./ligand_scoring_base.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./ligand_scoring_scrmsd.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./ligand_scoring_lddtpli.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./bb_lddt.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./views.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./superpose.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./qsscoring.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./trajectory_analysis.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./structure_analysis.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./helix_kinks.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./hbond.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./lddt.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./qsscore.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./scoring.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./chain_mapping.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./stereochemistry.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./dockq.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./contact_score.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./ligand_scoring.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./ligand_scoring_base.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./ligand_scoring_scrmsd.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./ligand_scoring_lddtpli.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/alg/./bb_lddt.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/stereo_data.json -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol_mm.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol_mm.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol_mm.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_mol_mm.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./forcefield.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./ff_reader.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./buildingblock.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./block_modifiers.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./gromacs_block_modifiers.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./heuristic_block_modifiers.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./interaction.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./settings.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./simulation.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./modeller.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./observer.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./state_extractor.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./system_creator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./topology_creator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./index.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./topology.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/mol/mm/./steep.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/forcefields/AMBER03.dat -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/forcefields/CHARMM27.dat -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/mm/_ost_mol_mm.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/mm/_ost_mol_mm.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/mm/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/mm/./antechamber.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/mm/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/mol/mm/./antechamber.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_seq.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_seq.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_seq.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_seq.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/impl/sequence_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/impl/sequence_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/impl/sequence_list_impl_fw.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/impl/sequence_list_impl.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/impl/sequence_list_iterator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./sequence_list.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./sequence_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./alignment_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./sequence_op.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./aligned_region.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./aligned_column.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./aligned_column_iterator.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./invalid_sequence.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./views_from_sequences.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/./profile_handle.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/_ost_seq.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/_ost_seq.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_seq_alg.so.2.9.0 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_seq_alg.so.2.9 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_seq_alg.so.2.9.0" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/libost_seq_alg.so -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./alignment_opts.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./clip_alignment.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./conservation.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./contact_prediction_score.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./contact_weight_matrix.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./distance_map.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./entropy.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./global_align.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./ins_del.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./local_align.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./merge_pairwise_alignments.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./module_config.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./pair_subst_weight_matrix.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./semiglobal_align.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./sequence_identity.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./sequence_similarity.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./subst_weight_matrix.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./variance_map.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./default_contact_weight_matrix.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./hmm_pseudo_counts.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./hmm_score.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/include/ost/seq/alg/./wrap_parasail.hh -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/_ost_seq_alg.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/_ost_seq_alg.so" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/./__init__.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/./mat.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/./renumber.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/./aaindex.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/./__init__.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/./mat.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/./renumber.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/seq/alg/./aaindex.pyc -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/aaindex/aaindex1 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/aaindex/aaindex2 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/share/openstructure/aaindex/aaindex3 -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/openstructure/libexec/ost_config -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/bin/ost -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/bin/dng -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/ost_startup.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/python3.12/dist-packages/ost/dng_startup.py -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/bin/molck -- Set non-toolchain portion of runtime path of "/build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/bin/molck" to "" -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/openstructure/libexec/ost-compare-ligand-structures -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/openstructure/libexec/ost-compare-structures -- Installing: /build/reproducible-path/openstructure-2.9.0/debian/tmp/usr/lib/openstructure/libexec/ost-compare-structures-legacy make[2]: Leaving directory '/build/reproducible-path/openstructure-2.9.0/obj-x86_64-linux-gnu' find debian/tmp/usr/lib -name '*.pyc' | xargs --no-run-if-empty rm make[1]: Leaving directory '/build/reproducible-path/openstructure-2.9.0' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/openstructure-2.9.0' dh_install find debian/python3-ost/usr/lib/python3/dist-packages -type f \ | xargs --no-run-if-empty chmod -x find debian/tmp/usr/lib -name 'libost_*.so.*' \ | while read LIB; \ do dh_install -p$(echo $LIB | cut -d / -f 5 | cut -d . -f 1 | sed 's/_/-/g')2.9 \ $LIB usr/lib/x86_64-linux-gnu; \ done find debian/tmp/usr/lib -name 'libost_*.so' \ | while read LIB; \ do dh_install -p$(echo $LIB | cut -d / -f 5 | cut -d . -f 1 | sed 's/_/-/g')-dev \ $LIB usr/lib/x86_64-linux-gnu; \ done make[1]: Leaving directory '/build/reproducible-path/openstructure-2.9.0' dh_installdocs dh_installchangelogs dh_python3 I: dh_python3 fs:421: renaming _ost_base.so to _ost_base.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_conop.so to _ost_conop.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_gui.so to _ost_gui.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_gfx.so to _ost_gfx.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_geom.so to _ost_geom.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_io.so to _ost_io.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_bindings.so to _ost_bindings.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_img.so to _ost_img.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_img_alg.so to _ost_img_alg.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_db.so to _ost_db.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_mol.so to _ost_mol.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_mol_alg.so to _ost_mol_alg.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_mol_mm.so to _ost_mol_mm.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_info.so to _ost_info.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_seq.so to _ost_seq.cpython-312-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _ost_seq_alg.so to _ost_seq_alg.cpython-312-x86_64-linux-gnu.so dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Provides field of package python3-ost: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-ost: substitution variable ${python3:Provides} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libost-geom2.9-dbgsym' in '../libost-geom2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-bindings2.9-dbgsym' in '../libost-bindings2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-mol2.9-dbgsym' in '../libost-mol2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-gui2.9' in '../libost-gui2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-img-alg2.9-dbgsym' in '../libost-img-alg2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-info2.9' in '../libost-info2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-seq2.9' in '../libost-seq2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-base2.9' in '../libost-base2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-io2.9-dbgsym' in '../libost-io2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-mol-mm-dev' in '../libost-mol-mm-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'openstructure-dbgsym' in '../openstructure-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-mol-mm2.9' in '../libost-mol-mm2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-base-dev' in '../libost-base-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-db2.9' in '../libost-db2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-db-dev' in '../libost-db-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-gui-dev' in '../libost-gui-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-info-dev' in '../libost-info-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-seq-dev' in '../libost-seq-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-geom-dev' in '../libost-geom-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-io-dev' in '../libost-io-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-bindings-dev' in '../libost-bindings-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-base2.9-dbgsym' in '../libost-base2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-db2.9-dbgsym' in '../libost-db2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-mol-dev' in '../libost-mol-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-conop-dev' in '../libost-conop-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-gfx-dev' in '../libost-gfx-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-img-alg-dev' in '../libost-img-alg-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-img-dev' in '../libost-img-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-seq2.9-dbgsym' in '../libost-seq2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-bindings2.9' in '../libost-bindings2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-mol-alg-dev' in '../libost-mol-alg-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-seq-alg-dev' in '../libost-seq-alg-dev_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-info2.9-dbgsym' in '../libost-info2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-geom2.9' in '../libost-geom2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-gfx2.9' in '../libost-gfx2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-mol-mm2.9-dbgsym' in '../libost-mol-mm2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'openstructure' in '../openstructure_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-conop2.9' in '../libost-conop2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-img2.9' in '../libost-img2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-conop2.9-dbgsym' in '../libost-conop2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'python3-ost' in '../python3-ost_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-io2.9' in '../libost-io2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-gfx2.9-dbgsym' in '../libost-gfx2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-img2.9-dbgsym' in '../libost-img2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-gui2.9-dbgsym' in '../libost-gui2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-mol2.9' in '../libost-mol2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-seq-alg2.9' in '../libost-seq-alg2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-seq-alg2.9-dbgsym' in '../libost-seq-alg2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'python3-ost-dbgsym' in '../python3-ost-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-mol-alg2.9' in '../libost-mol-alg2.9_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-mol-alg2.9-dbgsym' in '../libost-mol-alg2.9-dbgsym_2.9.0-2_amd64.deb'. dpkg-deb: building package 'libost-img-alg2.9' in '../libost-img-alg2.9_2.9.0-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../openstructure_2.9.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../openstructure_2.9.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1423805/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1423805/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1423805 and its subdirectories I: Current time: Sat Dec 7 01:05:24 +14 2024 I: pbuilder-time-stamp: 1733483124