I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 14 14:11:19 +14 2024 I: pbuilder-time-stamp: 1728864679 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc] I: copying [./kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz] I: copying [./kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 13 15:36:52 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting kineticstools in kineticstools-0.6.1+git20220223.1326a4d+dfsg dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying man-pages.patch dpkg-source: info: applying tests-import.patch dpkg-source: info: applying verbose-testing.patch dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying tests2to3.patch dpkg-source: info: applying man-align-cols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/159663/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 14 00:11 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/159663/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/159663/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=8543a85cebcf4e5b879636a17830c3ca LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=159663 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.046Pn4dD/pbuilderrc_GfGq --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.046Pn4dD/b2 --logfile b2/build.log kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/159663/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19798 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcore; however: Package python3-pbcore is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcommand; however: Package python3-pbcommand is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-uritools; however: Package python3-uritools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsz2{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-autocommand{a} python3-avro{a} python3-biopython{a} python3-cairo{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-docutils{a} python3-execnet{a} python3-freetype{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-iso8601{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pbcommand{a} python3-pbcore{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-pytest-runner{a} python3-pytest-xdist{a} python3-reportlab{a} python3-requests{a} python3-rlpycairo{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-uritools{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 167 newly installed, 0 to remove and 0 not upgraded. Need to get 92.3 MB of archives. After unpacking 349 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-1 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-1 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-1 [1965 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-1 [1381 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240824 [109 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 78 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3 [187 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.4.0-1 [63.1 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-7 [216 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.10.1-2 [360 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-6 [836 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.1-1 [1499 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 9.0.0-1 [474 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 112 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-1 [452 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-avro all 1.12.0+dfsg-1 [74.0 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.4.0-1 [502 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.26.1-2 [114 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.84+dfsg-2 [1645 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.3.2-4 [117 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-execnet all 2.1.1-1 [40.2 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-h5py-serial amd64 3.11.0-5 [975 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-h5py all 3.11.0-5 [14.7 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-iso8601 all 2.1.0-2 [12.1 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 python3-pbcommand all 2.1.1+git20220616.3f2e6c2-3 [90.5 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 python3-pysam amd64 0.22.1+ds-2+b1 [3474 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 python3-pbcore all 2.1.2+dfsg-8 [2831 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 python3-pytest-runner all 2.11.1-4 [8432 B] Get: 165 http://deb.debian.org/debian unstable/main amd64 python3-pytest-xdist all 3.6.1-1 [44.4 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.13.1-5 [16.7 MB] Get: 167 http://deb.debian.org/debian unstable/main amd64 python3-uritools all 4.0.3-1 [28.6 kB] Fetched 92.3 MB in 2s (57.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19798 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_amd64.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:amd64 (3.12.7-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20118 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_amd64.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21178 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-1_amd64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-9_amd64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../020-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../025-libelf1t64_0.191-2_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../027-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../028-libxml2_2.12.7+dfsg+really2.9.14-0.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../033-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../034-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../035-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../036-python3-typeguard_4.3.0-1_all.deb ... Unpacking python3-typeguard (4.3.0-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../037-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../038-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../039-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../040-python3-pkg-resources_74.1.2-2_all.deb ... Unpacking python3-pkg-resources (74.1.2-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../041-python3-zipp_3.20.2-1_all.deb ... Unpacking python3-zipp (3.20.2-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../042-python3-setuptools_74.1.2-2_all.deb ... Unpacking python3-setuptools (74.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../043-dh-python_6.20240824_all.deb ... Unpacking dh-python (6.20240824) ... Selecting previously unselected package xml-core. Preparing to unpack .../044-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package docutils-common. Preparing to unpack .../045-docutils-common_0.21.2+dfsg-2_all.deb ... Unpacking docutils-common (0.21.2+dfsg-2) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../046-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../048-libfontenc1_1%3a1.1.8-1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../049-libbrotli1_1.1.0-2+b4_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b4) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../050-libpng16-16t64_1.6.44-2_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../051-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../052-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../053-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../054-xfonts-utils_1%3a7.7+7_amd64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../055-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../056-fontconfig-config_2.15.0-1.1_amd64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../057-libaec0_1.1.3-1_amd64.deb ... Unpacking libaec0:amd64 (1.1.3-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../058-libblas3_3.12.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../059-libfontconfig1_2.15.0-1.1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../060-libpixman-1-0_0.42.2-1+b1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.42.2-1+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../061-libxau6_1%3a1.0.9-1+b1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1+b1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../062-libxdmcp6_1%3a1.1.2-3+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../063-libxcb1_1.17.0-2_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../064-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../065-libx11-6_2%3a1.8.7-1+b1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1+b1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../066-libxcb-render0_1.17.0-2_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-2) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../067-libxcb-shm0_1.17.0-2_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../068-libxext6_2%3a1.3.4-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../069-libxrender1_1%3a0.9.10-1.1+b1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1+b1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../070-libcairo2_1.18.2-2_amd64.deb ... Unpacking libcairo2:amd64 (1.18.2-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../071-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../072-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../073-libldap-2.5-0_2.5.18+dfsg-3_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../074-libnghttp2-14_1.63.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.63.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../075-libnghttp3-9_1.4.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.4.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../076-libngtcp2-16_1.6.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../077-libngtcp2-crypto-gnutls8_1.6.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../078-libpsl5t64_0.21.2-1.1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../079-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../080-libssh2-1t64_1.11.0-7_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.0-7) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../081-libcurl3t64-gnutls_8.10.1-2_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.10.1-2) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../082-libcurl4t64_8.10.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.10.1-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../083-libdeflate0_1.22-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.22-1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../084-libfribidi0_1.0.15-1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.15-1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../085-libgfortran5_14.2.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-6) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../086-libglib2.0-0t64_2.82.1-1_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.82.1-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../087-libgraphite2-3_1.3.14-2_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-2) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../088-libharfbuzz0b_9.0.0-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (9.0.0-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../089-libsz2_1.1.3-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.3-1) ... Selecting previously unselected package libhdf5-103-1t64:amd64. Preparing to unpack .../090-libhdf5-103-1t64_1.10.10+repack-4_amd64.deb ... Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Selecting previously unselected package libhdf5-hl-100t64:amd64. Preparing to unpack .../091-libhdf5-hl-100t64_1.10.10+repack-4_amd64.deb ... Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../092-libhtscodecs2_1.6.1-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../093-libhts3t64_1.20+ds-1_amd64.deb ... Unpacking libhts3t64:amd64 (1.20+ds-1) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../094-libimagequant0_2.18.0-1+b1_amd64.deb ... Unpacking libimagequant0:amd64 (2.18.0-1+b1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../095-libjbig0_2.1-6.1+b1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../096-libjpeg62-turbo_1%3a2.1.5-3_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../097-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../098-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../099-libjs-sphinxdoc_7.4.7-3_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../100-liblapack3_3.12.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../101-liblbfgsb0_3.0+dfsg.4-1+b1_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../102-liblcms2-2_2.16-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.16-2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../103-liblerc4_4.0.0+ds-4+b1_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-4+b1) ... Selecting previously unselected package liblzf1:amd64. Preparing to unpack .../104-liblzf1_3.6-4+b1_amd64.deb ... Unpacking liblzf1:amd64 (3.6-4+b1) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../105-libopenjp2-7_2.5.0-2+b3_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-2+b3) ... Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../106-libraqm0_0.10.1-1+b1_amd64.deb ... Unpacking libraqm0:amd64 (0.10.1-1+b1) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../107-libsharpyuv0_1.4.0-0.1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../108-libwebp7_1.4.0-0.1_amd64.deb ... Unpacking libwebp7:amd64 (1.4.0-0.1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../109-libtiff6_4.5.1+git230720-5_amd64.deb ... Unpacking libtiff6:amd64 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../110-libwebpdemux2_1.4.0-0.1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../111-libwebpmux3_1.4.0-0.1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... Selecting previously unselected package python3-avro. Preparing to unpack .../112-python3-avro_1.12.0+dfsg-1_all.deb ... Unpacking python3-avro (1.12.0+dfsg-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../113-python3-numpy_1%3a1.26.4+ds-11_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-11) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../114-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../115-python3-pil_10.4.0-1_amd64.deb ... Unpacking python3-pil:amd64 (10.4.0-1) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../116-python3-cairo_1.26.1-2_amd64.deb ... Unpacking python3-cairo (1.26.1-2) ... Selecting previously unselected package python3-freetype. Preparing to unpack .../117-python3-freetype_2.5.1-1_all.deb ... Unpacking python3-freetype (2.5.1-1) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../118-python3-rlpycairo_0.3.0-3_all.deb ... Unpacking python3-rlpycairo (0.3.0-3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../119-python3-reportlab_4.2.5-1_all.deb ... Unpacking python3-reportlab (4.2.5-1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../120-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../121-python3-biopython_1.84+dfsg-2_amd64.deb ... Unpacking python3-biopython (1.84+dfsg-2) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../122-python3-certifi_2024.8.30+dfsg-1_all.deb ... Unpacking python3-certifi (2024.8.30+dfsg-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../123-python3-charset-normalizer_3.3.2-4_amd64.deb ... Unpacking python3-charset-normalizer (3.3.2-4) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../124-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-roman. Preparing to unpack .../125-python3-roman_4.2-1_all.deb ... Unpacking python3-roman (4.2-1) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../126-python3-docutils_0.21.2+dfsg-2_all.deb ... Unpacking python3-docutils (0.21.2+dfsg-2) ... Selecting previously unselected package python3-execnet. Preparing to unpack .../127-python3-execnet_2.1.1-1_all.deb ... Unpacking python3-execnet (2.1.1-1) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../128-python3-h5py-serial_3.11.0-5_amd64.deb ... Unpacking python3-h5py-serial (3.11.0-5) ... Selecting previously unselected package python3-h5py. Preparing to unpack .../129-python3-h5py_3.11.0-5_all.deb ... Unpacking python3-h5py (3.11.0-5) ... Selecting previously unselected package python3-idna. Preparing to unpack .../130-python3-idna_3.8-2_all.deb ... Unpacking python3-idna (3.8-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../131-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-iso8601. Preparing to unpack .../132-python3-iso8601_2.1.0-2_all.deb ... Unpacking python3-iso8601 (2.1.0-2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../133-python3-packaging_24.1-1_all.deb ... Unpacking python3-packaging (24.1-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../134-python3-urllib3_2.0.7-2_all.deb ... Unpacking python3-urllib3 (2.0.7-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../135-python3-requests_2.32.3+dfsg-1_all.deb ... Unpacking python3-requests (2.32.3+dfsg-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../136-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) ... Selecting previously unselected package python3-pbcommand. Preparing to unpack .../137-python3-pbcommand_2.1.1+git20220616.3f2e6c2-3_all.deb ... Unpacking python3-pbcommand (2.1.1+git20220616.3f2e6c2-3) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../138-python3-pysam_0.22.1+ds-2+b1_amd64.deb ... Unpacking python3-pysam (0.22.1+ds-2+b1) ... Selecting previously unselected package python3-pbcore. Preparing to unpack .../139-python3-pbcore_2.1.2+dfsg-8_all.deb ... Unpacking python3-pbcore (2.1.2+dfsg-8) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../140-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../141-python3-pytest_8.3.3-1_all.deb ... Unpacking python3-pytest (8.3.3-1) ... Selecting previously unselected package python3-pytest-runner. Preparing to unpack .../142-python3-pytest-runner_2.11.1-4_all.deb ... Unpacking python3-pytest-runner (2.11.1-4) ... Selecting previously unselected package python3-pytest-xdist. Preparing to unpack .../143-python3-pytest-xdist_3.6.1-1_all.deb ... Unpacking python3-pytest-xdist (3.6.1-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../144-python3-scipy_1.13.1-5_amd64.deb ... Unpacking python3-scipy (1.13.1-5) ... Selecting previously unselected package python3-uritools. Preparing to unpack .../145-python3-uritools_4.0.3-1_all.deb ... Unpacking python3-uritools (4.0.3-1) ... Setting up libhtscodecs2:amd64 (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-2) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libxcb1:amd64 (1.17.0-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libxcb-render0:amd64 (1.17.0-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:amd64 (1.1.0-2+b4) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.63.0-1) ... Setting up libdeflate0:amd64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:amd64 (1.17.0-2) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libaec0:amd64 (1.1.3-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Oct 14 00:12:26 UTC 2024. Universal Time is now: Mon Oct 14 00:12:26 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.82.1-1) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:amd64 (3.6-4+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-6) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.4.0-1) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.6.0-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.0-7) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-1) ... Setting up libwebpmux3:amd64 (1.4.0-0.1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (9.0.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libcurl4t64:amd64 (8.10.1-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:amd64 (8.10.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libhts3t64:amd64 (1.20+ds-1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-1) ... Setting up python3.12 (3.12.7-1) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up python3-pil:amd64 (10.4.0-1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.1-1) ... Setting up python3-iso8601 (2.1.0-2) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-avro (1.12.0+dfsg-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-execnet (2.1.1-1) ... Setting up python3-uritools (4.0.3-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pysam (0.22.1+ds-2+b1) ... Setting up python3-cairo (1.26.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-charset-normalizer (3.3.2-4) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-pytest-xdist (3.6.1-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pytest-runner (2.11.1-4) ... Setting up dh-python (6.20240824) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-h5py-serial (3.11.0-5) ... Setting up python3-h5py (3.11.0-5) ... Setting up python3-pbcommand (2.1.1+git20220616.3f2e6c2-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-2) ... Setting up python3-pbcore (2.1.2+dfsg-8) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/159663/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/159663/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_source.changes dpkg-buildpackage: info: source package kineticstools dpkg-buildpackage: info: source version 0.6.1+git20220223.1326a4d+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pytest_cache rm -rf kineticsTools.egg-info rm -f nosetests.xml rm -f bin/ipdSummary make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/pipelineTools.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/MixtureEstimationMethods.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ResultWriter.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/loader.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/summarizeModifications.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/PositiveControlEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ipdSummary.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ReferenceUtils.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal copying kineticsTools/internal/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/gather_bigwig.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks running egg_info creating kineticsTools.egg-info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt writing manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'kineticsTools.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kineticsTools.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kineticsTools.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kineticsTools.resources' to be distributed and are already explicitly excluding 'kineticsTools.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/P6-C4.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP2-C2.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP3-C3.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/unknown.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources running build_ext building 'kineticsTools/tree_predict' extension creating build creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/kineticsTools x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c kineticsTools/tree_predict.c -o build/temp.linux-x86_64-cpython-312/kineticsTools/tree_predict.o -O3 -shared -std=c99 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/kineticsTools/tree_predict.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tree_predict.cpython-312-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' cp kineticsTools/ipdSummary.py bin/ipdSummary chmod +x bin/ipdSummary PYTHONPATH=/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg PATH=$PATH:/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/bin dh_auto_test I: pybuild base:311: cd /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build; python3.12 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build configfile: pytest.ini plugins: typeguard-4.3.0, xdist-3.6.1 created: 20/20 workers 20 workers [19 items] scheduling tests via LoadScopeScheduling test/test_ReferenceUtils.py::TestReferenceUtils::test_bam test/test_outputs.py::TestOutputs::test_csv_output test/test_integration.py::TestKineticsTools::test_help test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_ipdModel.py::TestIpdModel::test_refLength [gw5] [ 5%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output test/test_outputs.py::TestOutputs::test_bigwig [gw0] [ 10%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset [gw0] [ 15%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow [gw0] [ 21%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw1] [ 26%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength test/test_ipdModel.py::TestIpdModel::test_snippetFunc [gw1] [ 31%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow [gw1] [ 36%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow test/test_loader.py::test_basic [gw2] [ 42%] PASSED test/test_loader.py::test_basic test/test_loader.py::test_path [gw2] [ 47%] PASSED test/test_loader.py::test_path test/test_loader.py::test_path_with_prefixed_chem [gw2] [ 52%] PASSED test/test_loader.py::test_path_with_prefixed_chem test/test_loader.py::test_getResourcePathSpec [gw2] [ 57%] PASSED test/test_loader.py::test_getResourcePathSpec [gw3] [ 63%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli [gw3] [ 68%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli [gw5] [ 73%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig [gw0] [ 78%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw0] [ 84%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw6] [ 89%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw4] [ 94%] PASSED test/test_integration.py::TestKineticsTools::test_help test/test_integration.py::TestKineticsTools::test_ecoli_first_50k [gw4] [100%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pbcore/__init__.py:1: 20 warnings /usr/lib/python3/dist-packages/pbcore/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/nosetests.xml - ============================= slowest 20 durations ============================= 1.11s call test/test_integration.py::TestKineticsTools::test_help (19 durations < 0.005s hidden. Use -vv to show these durations.) ================== 5 passed, 14 skipped, 20 warnings in 4.38s ================== make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'kineticsTools.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kineticsTools.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kineticsTools.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kineticsTools.resources' to be distributed and are already explicitly excluding 'kineticsTools.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12 creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tree_predict.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/internal copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/internal copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/pipelineTools.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ResultWriter.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/loader.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/summarizeModifications.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/loader.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ipdSummary.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ReferenceUtils.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/.gitignore -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/README.md -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/nosetests.xml -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/loader.py to loader.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-312.pyc running install_egg_info Copying kineticsTools.egg-info to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing ipdSummary script to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin Installing summarizeModifications script to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin mkdir -p /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin mv debian/python3-kineticstools/usr/bin/* /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin mkdir -p /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1 rst2man doc/manual.rst > /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1 doc/manual.rst:53: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported mkdir -p debian/kineticstools-data/usr/share/kineticstools # There is probably a simpler way, but that should do for the moment. set -e \ ; for libdir in debian/python3-kineticstools/usr/lib/python3.* \ ; do rm -rf /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; mv ${libdir}/dist-packages/kineticsTools/resources /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; done rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'kineticstools' in '../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_all.deb'. dpkg-deb: building package 'kineticstools-data' in '../kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-3_all.deb'. dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_amd64.deb'. dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/159663/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/159663/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/159663 and its subdirectories I: Current time: Mon Oct 14 14:14:26 +14 2024 I: pbuilder-time-stamp: 1728864866