I: pbuilder: network access will be disabled during build
I: Current time: Wed Dec 18 09:29:48 +14 2024
I: pbuilder-time-stamp: 1734463788
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [ampliconnoise_1.29-15.dsc]
I: copying [./ampliconnoise_1.29.orig.tar.gz]
I: copying [./ampliconnoise_1.29-15.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Nov 26 21:56:47 2024 
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./ampliconnoise_1.29-15.dsc: no acceptable signature found
dpkg-source: info: extracting ampliconnoise in ampliconnoise-1.29
dpkg-source: info: unpacking ampliconnoise_1.29.orig.tar.gz
dpkg-source: info: unpacking ampliconnoise_1.29-15.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-path-for-data.patch
dpkg-source: info: applying fix-segfault-on-non-fasta-input.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying clang-ftbfs.patch
dpkg-source: info: applying mayhem.patch
dpkg-source: info: applying fix_sequence_of_function_definitions.patch
dpkg-source: info: applying fix_missing_header.patch
dpkg-source: info: applying gcc-14.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2383513/tmp/hooks/D01_modify_environment starting
debug: Running on ionos1-amd64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Dec 17 19:30 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/2383513/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/2383513/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
  BASH_VERSION='5.2.37(1)-release'
  BUILDDIR=/build/reproducible-path
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=amd64
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
  DIRSTACK=()
  DISTRIBUTION=unstable
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=x86_64
  HOST_ARCH=amd64
  IFS=' 	
  '
  INVOCATION_ID=67d761297bde4400add81fbe6a8fff8d
  LANG=C
  LANGUAGE=et_EE:et
  LC_ALL=C
  MACHTYPE=x86_64-pc-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=2383513
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gAR3EEz2/pbuilderrc_jwyE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gAR3EEz2/b2 --logfile b2/build.log ampliconnoise_1.29-15.dsc'
  SUDO_GID=110
  SUDO_UID=105
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://46.16.76.132:3128
I: uname -a
  Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2383513/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libgsl-dev, mpi-default-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19966 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on libgsl-dev; however:
  Package libgsl-dev is not installed.
 pbuilder-satisfydepends-dummy depends on mpi-default-dev; however:
  Package mpi-default-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libamd-comgr2{a} libamdhip64-5{a} libarchive-zip-perl{a} libcbor0.10{a} libcom-err2{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmunge2{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi40{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2t64{a} libpsm-infinipath1{a} libpsm2-2{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} librdmacm1t64{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libucx0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} libz3-4{a} m4{a} man-db{a} media-types{a} mpi-default-dev{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-snowballstemmer{a} python3-sphinx{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl javascript-common krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libjson-xs-perl libmail-sendmail-perl libpaper-utils lynx python3-pil wget xauth 
0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded.
Need to get 127 MB of archives. After unpacking 525 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB]
Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-3 [677 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B]
Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 30 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-3 [200 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 32 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 35 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 36 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB]
Get: 37 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB]
Get: 38 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB]
Get: 39 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:9.9p1-3 [991 kB]
Get: 40 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB]
Get: 41 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 42 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 43 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 44 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-3 [723 kB]
Get: 45 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.21 [88.9 kB]
Get: 46 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB]
Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 48 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 49 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 51 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 52 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 53 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB]
Get: 54 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 55 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-3 [1600 kB]
Get: 56 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 57 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 58 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.21 [919 kB]
Get: 59 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB]
Get: 60 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB]
Get: 61 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-11 [836 kB]
Get: 62 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-11 [881 kB]
Get: 63 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-11 [11.7 MB]
Get: 64 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-11 [13.2 kB]
Get: 65 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB]
Get: 66 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB]
Get: 67 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 52.0-2+b1 [62.2 kB]
Get: 68 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 52.0-2+b1 [343 kB]
Get: 69 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB]
Get: 70 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-18 [23.6 MB]
Get: 71 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB]
Get: 72 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.123-1 [8084 B]
Get: 73 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB]
Get: 74 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB]
Get: 75 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB]
Get: 76 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.1.2+ds-1 [59.8 kB]
Get: 77 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-2 [535 kB]
Get: 78 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB]
Get: 79 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB]
Get: 80 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB]
Get: 81 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB]
Get: 82 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB]
Get: 83 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB]
Get: 84 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB]
Get: 85 http://deb.debian.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB]
Get: 86 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB]
Get: 87 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 52.0-2+b1 [70.4 kB]
Get: 88 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB]
Get: 89 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB]
Get: 90 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB]
Get: 91 http://deb.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.8+dfsg-5 [1222 kB]
Get: 92 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB]
Get: 93 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB]
Get: 94 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-8 [393 kB]
Get: 95 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.4.7-8 [165 kB]
Get: 96 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB]
Get: 97 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB]
Get: 98 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 99 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 100 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 101 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 102 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 103 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB]
Get: 104 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b1 [14.2 kB]
Get: 105 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB]
Get: 106 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB]
Get: 107 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 52.0-2+b1 [28.2 kB]
Get: 108 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 52.0-2+b1 [43.4 kB]
Get: 109 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB]
Get: 110 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB]
Get: 111 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 52.0-2+b1 [636 kB]
Get: 112 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 113 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 114 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 115 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-2 [30.3 kB]
Get: 116 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB]
Get: 117 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.15-4+b1 [20.0 kB]
Get: 118 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 5.0.5-1 [652 kB]
Get: 119 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB]
Get: 120 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.6-3 [2360 kB]
Get: 121 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.6-3 [97.0 kB]
Get: 122 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB]
Get: 124 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.1.3-2 [616 kB]
Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB]
Get: 126 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.16.0-1 [5696 kB]
Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.16.0-1 [114 kB]
Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-roman all 4.2-1 [10.4 kB]
Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB]
Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B]
Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB]
Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1.1 [120 kB]
Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB]
Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB]
Get: 143 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B]
Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB]
Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB]
Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.2.3-4 [112 kB]
Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB]
Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB]
Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.1.3-2 [468 kB]
Get: 151 http://deb.debian.org/debian unstable/main amd64 libpmix-dev amd64 5.0.5-1 [3961 kB]
Get: 152 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.6-3 [188 kB]
Get: 153 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.6-3 [1088 kB]
Get: 154 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.17 [3148 B]
Fetched 127 MB in 10s (12.3 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Current default time zone: 'Etc/UTC'
Local time is now:      Tue Dec 17 19:33:41 UTC 2024.
Universal Time is now:  Tue Dec 17 19:33:41 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-alabaster (0.7.16-0.1) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-pkg-resources (75.2.0-1) ...
Setting up libopenmpi40:amd64 (5.0.6-3) ...
Setting up python3-babel (2.16.0-1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
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Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up python3-requests (2.32.3+dfsg-1) ...
Setting up openmpi-bin (5.0.6-3) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Processing triggers for libc-bin (2.40-4) ...
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Setting up docutils-common (0.21.2+dfsg-2) ...
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update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode
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0 added, 0 removed; done.
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done.
Reading package lists...
Building dependency tree...
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Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/2383513/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/2383513/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/ampliconnoise-1.29/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../ampliconnoise_1.29-15_source.changes
dpkg-buildpackage: info: source package ampliconnoise
dpkg-buildpackage: info: source version 1.29-15
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   dh_auto_clean
	make -j20 clean
make[1]: Entering directory '/build/reproducible-path/ampliconnoise-1.29'
(cd FCluster && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/FCluster'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *o FCluster
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/FCluster'
(cd FastaUnique && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/FastaUnique'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o FastaUnique
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/FastaUnique'
(cd NDist && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/NDist'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o NDist
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/NDist'
(cd PyroDist && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PyroDist'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o PyroDist
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PyroDist'
(cd PyroNoise && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoise'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o PyroNoise
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoise'
(cd PyroNoiseM && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoiseM'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o PyroNoiseM
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoiseM'
(cd PyroNoiseA && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoiseA'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o PyroNoiseA
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoiseA'
(cd SeqDist && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/SeqDist'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o SeqDist
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/SeqDist'
(cd SeqNoise && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/SeqNoise'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o SeqNoise
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/SeqNoise'
(cd SplitClusterEven && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/SplitClusterEven'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o SplitClusterEven
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/SplitClusterEven'
(cd SplitClusterClust && make clean) 
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/SplitClusterClust'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o SplitClusterClust
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/SplitClusterClust'
(cd Perseus && make clean)	
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/Perseus'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o Perseus
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/Perseus'
(cd PerseusD && make clean)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PerseusD'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
rm -rf *.o PerseusD
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PerseusD'
(cd bin && rm -rf *)
make[1]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29'
   debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/ampliconnoise-1.29'
dh_clean
rm -f *.o
rm -f *.1
make[1]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29'
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
   dh_auto_build
	make -j20 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/ampliconnoise-1.29'
(cd FCluster && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/FCluster'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c FCluster.c
FCluster.c: In function 'readDistanceMatrix':
FCluster.c:356:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  356 |     fgets(szLine, MAX_LINE_LENGTH, ifp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FCluster.c:390:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  390 |         fgets(szLine, MAX_LINE_LENGTH, ifp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FCluster.c:420:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  420 |         fgets(szLine, MAX_LINE_LENGTH, ifp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o FCluster FCluster.o  -lm 
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/FCluster'
(cd FastaUnique && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/FastaUnique'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c FastaUnique.c
linking...
cc -Wl,-z,relro -Wl,-z,now -o FastaUnique FastaUnique.o  -lm 
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/FastaUnique'
(cd NDist && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/NDist'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
mpicc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c NDist.c 
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o NDist NDist.o  -lm  
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/NDist'
(cd PyroDist && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PyroDist'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
mpicc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c PyroDist.c
PyroDist.c: In function 'readData':
PyroDist.c:403:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  403 |     fgets(szLine, MAX_LINE_LENGTH, ifp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroDist.c:433:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  433 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroDist.c: In function 'initLookUp':
PyroDist.c:816:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  816 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroDist.c:825:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  825 |         fgets(szLine, MAX_LINE_LENGTH, ifp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroDist PyroDist.o -lm 
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PyroDist'
(cd PyroNoise && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoise'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
mpicc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c PyroNoise.c
PyroNoise.c: In function 'writeCentroids':
PyroNoise.c:2073:21: warning: too many arguments for format [-Wformat-extra-args]
 2073 |     fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoise.c: In function 'readData':
PyroNoise.c:549:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  549 |     fgets(szLine, MAX_LINE_LENGTH, ifp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoise.c:579:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  579 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoise.c: In function 'initLookUp':
PyroNoise.c:963:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  963 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoise.c:972:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  972 |         fgets(szLine, MAX_LINE_LENGTH, ifp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoise PyroNoise.o  -lm
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoise'
(cd SeqDist && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/SeqDist'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
mpicc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c SeqDist.c
SeqDist.c: In function 'initLookUp':
SeqDist.c:888:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  888 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o SeqDist SeqDist.o -lm 
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/SeqDist'
(cd PyroNoiseM && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoiseM'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
mpicc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c PyroNoiseM.c
PyroNoiseM.c: In function 'writeCentroids':
PyroNoiseM.c:2139:21: warning: too many arguments for format [-Wformat-extra-args]
 2139 |     fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoiseM.c: In function 'readData':
PyroNoiseM.c:602:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  602 |     fgets(szLine, MAX_LINE_LENGTH, ifp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoiseM.c:632:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  632 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoiseM.c: In function 'initLookUp':
PyroNoiseM.c:1029:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1029 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoiseM.c:1038:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1038 |         fgets(szLine, MAX_LINE_LENGTH, ifp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoiseM PyroNoiseM.o  -lm
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoiseM'
(cd PyroNoiseA && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoiseA'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
mpicc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c PyroNoiseA.c
PyroNoiseA.c: In function 'writeCentroids':
PyroNoiseA.c:2169:21: warning: too many arguments for format [-Wformat-extra-args]
 2169 |     fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoiseA.c: In function 'readData':
PyroNoiseA.c:601:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  601 |     fgets(szLine, MAX_LINE_LENGTH, ifp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoiseA.c:662:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  662 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoiseA.c: In function 'initLookUp':
PyroNoiseA.c:1059:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1059 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PyroNoiseA.c:1068:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1068 |         fgets(szLine, MAX_LINE_LENGTH, ifp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc  -o PyroNoiseA PyroNoiseA.o  -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PyroNoiseA'
(cd SeqNoise && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/SeqNoise'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
mpicc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c SeqNoise.c
SeqNoise.c: In function 'main':
SeqNoise.c:121:25: warning: too many arguments for format [-Wformat-extra-args]
  121 |     if(bVerbose){printf("%d: Broadcast distance matrix\n", rank, nSize, nPacket); fflush(stdout);}
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SeqNoise.c: In function 'initLookUp':
SeqNoise.c:2135:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2135 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SeqNoise.c: In function 'outputMapping':
SeqNoise.c:2371:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2371 |       fgets(szLine,BIG_LINE_LENGTH,ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SeqNoise.c: In function 'readDistanceMatrix':
SeqNoise.c:2459:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2459 |     fgets(szLine, MAX_LINE_LENGTH, ifp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SeqNoise.c:2489:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2489 |         fgets(szLine, MAX_LINE_LENGTH, ifp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o SeqNoise SeqNoise.o -lm 
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/SeqNoise'
(cd SplitClusterEven && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/SplitClusterEven'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c SplitClusterEven.c
SplitClusterEven.c: In function 'readMapFile':
SplitClusterEven.c:681:19: warning: too many arguments for format [-Wformat-extra-args]
  681 |   fprintf(stderr, "Failed to open map file\n", szMapFile);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'readData':
SplitClusterEven.c:501:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  501 |     fgets(szLine, MAX_LINE_LENGTH, ifp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:523:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  523 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'readMapFile':
SplitClusterEven.c:647:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  647 |       fgets(szLine, BIG_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'main':
SplitClusterEven.c:89:28: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
   89 |     sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
      |                            ^~          ~~~~~
In file included from /usr/include/stdio.h:970,
                 from SplitClusterEven.c:1:
In function 'sprintf',
    inlined from 'main' at SplitClusterEven.c:89:5:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 7 and 2053 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'main':
SplitClusterEven.c:90:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
   90 |     sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
      |                           ^~          ~~~~~
In function 'sprintf',
    inlined from 'main' at SplitClusterEven.c:90:5:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 6 and 2052 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'main':
SplitClusterEven.c:91:28: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
   91 |     sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
      |                            ^~          ~~~~~
In function 'sprintf',
    inlined from 'main' at SplitClusterEven.c:91:5:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 7 and 2053 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'main':
SplitClusterEven.c:142:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
  142 |       sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
      |                              ^~          ~~~~~
In function 'sprintf',
    inlined from 'main' at SplitClusterEven.c:142:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 7 and 2053 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'main':
SplitClusterEven.c:143:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
  143 |       sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
      |                             ^~          ~~~~~
In function 'sprintf',
    inlined from 'main' at SplitClusterEven.c:143:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 6 and 2052 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'main':
SplitClusterEven.c:144:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
  144 |       sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
      |                              ^~          ~~~~~
In function 'sprintf',
    inlined from 'main' at SplitClusterEven.c:144:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 7 and 2053 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o SplitClusterEven SplitClusterEven.o -lm 
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/SplitClusterEven'
(cd SplitClusterClust && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/SplitClusterClust'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c SplitClusterClust.c
SplitClusterClust.c: In function 'readMapFile':
SplitClusterClust.c:316:19: warning: too many arguments for format [-Wformat-extra-args]
  316 |   fprintf(stderr, "Failed to open map file\n", szMapFile);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterClust.c: In function 'readData':
SplitClusterClust.c:188:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  188 |     fgets(szLine, MAX_LINE_LENGTH, ifp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterClust.c:210:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  210 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterClust.c: In function 'readMapFile':
SplitClusterClust.c:282:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  282 |       fgets(szLine, BIG_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterClust.c: In function 'main':
SplitClusterClust.c:52:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
   52 |       sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
      |                             ^~          ~~~~~
In file included from /usr/include/stdio.h:970,
                 from SplitClusterClust.c:1:
In function 'sprintf',
    inlined from 'main' at SplitClusterClust.c:52:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 6 and 2052 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
SplitClusterClust.c: In function 'main':
SplitClusterClust.c:88:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
   88 |       sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
      |                             ^~          ~~~~~
In function 'sprintf',
    inlined from 'main' at SplitClusterClust.c:88:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 6 and 2052 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
linking...
gcc -Wl,-z,relro -Wl,-z,now -o SplitClusterClust SplitClusterClust.o -lm 
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/SplitClusterClust'
(cd Perseus && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/Perseus'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c Perseus.c
Perseus.c: In function 'initLookUp':
Perseus.c:1249:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1249 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Perseus.c: In function 'calcLoonIndex':
Perseus.c:1640:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
 1640 |   system(szCommand);
      |   ^~~~~~~~~~~~~~~~~
Perseus.c:1638:34: warning: '%s' directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=]
 1638 |   sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
      |                                  ^~             ~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from Perseus.c:8:
In function 'sprintf',
    inlined from 'calcLoonIndex' at Perseus.c:1638:3:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 28 and 131098 bytes into a destination of size 65536
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o Perseus Perseus.o  -lm -lgsl -lgslcblas
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/Perseus'
(cd PerseusD && CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29/PerseusD'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ampliconnoise-1.29=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -c PerseusD.c
PerseusD.c: In function 'initLookUp':
PerseusD.c:1301:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1301 |       fgets(szLine, MAX_LINE_LENGTH, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PerseusD.c: In function 'calcLoonIndex':
PerseusD.c:1651:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
 1651 |   system(szCommand);
      |   ^~~~~~~~~~~~~~~~~
PerseusD.c:1649:34: warning: '%s' directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=]
 1649 |   sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
      |                                  ^~             ~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from PerseusD.c:8:
In function 'sprintf',
    inlined from 'calcLoonIndex' at PerseusD.c:1649:3:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 28 and 131098 bytes into a destination of size 65536
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o PerseusD PerseusD.o  -lm -lgsl -lgslcblas
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29/PerseusD'
make[1]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29'
   dh_auto_test
   create-stamp debian/debhelper-build-stamp
   dh_prep
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/ampliconnoise-1.29'
make install
make[2]: Entering directory '/build/reproducible-path/ampliconnoise-1.29'
cp FCluster/FCluster bin
cp FastaUnique/FastaUnique bin
cp NDist/NDist bin
cp PyroDist/PyroDist bin
cp PyroNoise/PyroNoise bin
cp PyroNoiseM/PyroNoiseM bin
cp PyroNoiseA/PyroNoiseA bin
cp SeqDist/SeqDist bin
cp SeqNoise/SeqNoise bin
cp SplitClusterEven/SplitClusterEven bin
cp SplitClusterClust/SplitClusterClust bin
cp Perseus/Perseus bin
cp PerseusD/PerseusD bin
make[2]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29'
dh_install bin/* /usr/bin
dh_install Data/* /usr/share/ampliconnoise/Data/
dh_install Scripts/* /usr/share/ampliconnoise/Scripts/
make[1]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29'
   dh_installdocs
   dh_installchangelogs
   dh_installexamples
   debian/rules override_dh_installman
make[1]: Entering directory '/build/reproducible-path/ampliconnoise-1.29'
debian/ampliconnoise.pod
pod2man -c AmpliconNoise Documentation debian/ampliconnoise.pod > ampliconnoise.1
dh_installman ampliconnoise.1
( for f in bin/* ; do \
  ln -s ampliconnoise.1 debian/ampliconnoise/usr/share/man/man1/`basename "$f"`.1 ; \
done )
make[1]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29'
   dh_perl
   dh_link
   dh_strip_nondeterminism
   debian/rules override_dh_compress
make[1]: Entering directory '/build/reproducible-path/ampliconnoise-1.29'
# Use xz compression for data file to shrink size even more
find debian -name C005.dat -exec xz \{\} \;
dh_compress --exclude=.pdf
make[1]: Leaving directory '/build/reproducible-path/ampliconnoise-1.29'
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
dpkg-gencontrol: warning: package ampliconnoise: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package ampliconnoise: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'ampliconnoise-dbgsym' in '../ampliconnoise-dbgsym_1.29-15_amd64.deb'.
dpkg-deb: building package 'ampliconnoise' in '../ampliconnoise_1.29-15_amd64.deb'.
 dpkg-genbuildinfo --build=binary -O../ampliconnoise_1.29-15_amd64.buildinfo
 dpkg-genchanges --build=binary -O../ampliconnoise_1.29-15_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/2383513/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/2383513/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/2383513 and its subdirectories
I: Current time: Wed Dec 18 09:38:06 +14 2024
I: pbuilder-time-stamp: 1734464286