I: pbuilder: network access will be disabled during build I: Current time: Sat May 17 15:21:36 +14 2025 I: pbuilder-time-stamp: 1747444896 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [twopaco_1.0.0+dfsg-1.dsc] I: copying [./twopaco_1.0.0+dfsg.orig.tar.xz] I: copying [./twopaco_1.0.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 05:53:28 2022 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./twopaco_1.0.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting twopaco in twopaco-1.0.0+dfsg dpkg-source: info: unpacking twopaco_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking twopaco_1.0.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/78862/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 17 01:21 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/78862/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/78862/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=54a54cedd535499d87611e076e85919c LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=78862 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.m1BJWp1W/pbuilderrc_42On --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.m1BJWp1W/b2 --logfile b2/build.log twopaco_1.0.0+dfsg-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 15 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/78862/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libtbb-dev, libtclap-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libtbb-dev; however: Package libtbb-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhwloc15{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtclap-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 40.3 MB of archives. After unpacking 150 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libarchive13 i386 3.7.2-1 [386 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libpsl5 i386 0.21.2-1+b1 [59.7 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libssh2-1 i386 1.11.0-4 [224 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libcurl4 i386 8.5.0-2 [463 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libuv1 i386 1.48.0-1 [156 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.28.3-1 [2128 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 cmake i386 3.28.3-1 [11.7 MB] Get: 36 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libhwloc15 i386 2.10.0-1+b1 [175 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libtbbmalloc2 i386 2021.11.0-2 [48.3 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libtbbbind-2-5 i386 2021.11.0-2 [14.2 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libtbb12 i386 2021.11.0-2 [89.3 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libtbb-dev i386 2021.11.0-2 [193 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libtclap-dev i386 1.2.5-1+b1 [3360 kB] Fetched 40.3 MB in 2s (22.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_i386.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../04-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../17-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../19-libarchive13_3.7.2-1_i386.deb ... Unpacking libarchive13:i386 (3.7.2-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5+b3_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../24-libnghttp2-14_1.59.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.59.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../25-libpsl5_0.21.2-1+b1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../27-libssh2-1_1.11.0-4_i386.deb ... Unpacking libssh2-1:i386 (1.11.0-4) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../28-libcurl4_8.5.0-2_i386.deb ... Unpacking libcurl4:i386 (8.5.0-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../29-libexpat1_2.5.0-2+b2_i386.deb ... Unpacking libexpat1:i386 (2.5.0-2+b2) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../30-libjsoncpp25_1.9.5-6+b2_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../31-librhash0_1.4.3-3+b1_i386.deb ... Unpacking librhash0:i386 (1.4.3-3+b1) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../32-libuv1_1.48.0-1_i386.deb ... Unpacking libuv1:i386 (1.48.0-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../33-cmake-data_3.28.3-1_all.deb ... Unpacking cmake-data (3.28.3-1) ... Selecting previously unselected package cmake. Preparing to unpack .../34-cmake_3.28.3-1_i386.deb ... Unpacking cmake (3.28.3-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../35-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../36-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../37-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../39-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... 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Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/78862/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/78862/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package twopaco dpkg-buildpackage: info: source version 1.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --sourcedir=src dh_auto_clean -O--sourcedir=src dh_autoreconf_clean -O--sourcedir=src dh_clean -O--sourcedir=src debian/rules binary dh binary --sourcedir=src dh_update_autotools_config -O--sourcedir=src dh_autoreconf -O--sourcedir=src dh_auto_configure -O--sourcedir=src cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu ../src -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu dh_auto_build -O--sourcedir=src cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/depend make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/depend make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump/CMakeFiles/graphdump.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor/CMakeFiles/twopaco.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/build make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/build make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' [ 7%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp [ 14%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o [ 21%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o [ 28%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o [ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp [ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp [ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp [ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o [ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp [ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp [ 78%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp [ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In function ‘void GenerateFastaOutput(const std::string&, const std::vector >&, size_t)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:519:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 519 | std::vector seen(MAX_SEGMENT_NUMBER, 0); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In instantiation of ‘void GenerateGfaOutput(const std::string&, const std::vector >&, size_t, bool, G) [with G = Gfa1Generator; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:676:21: required from here /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 401 | std::vector seen(MAX_SEGMENT_NUMBER, 0); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In instantiation of ‘void GenerateGfaOutput(const std::string&, const std::vector >&, size_t, bool, G) [with G = Gfa2Generator; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:685:21: required from here /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp: In function ‘int main(int, char**)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp:112:25: warning: conversion from ‘long long unsigned int’ to ‘unsigned int’ changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 112 | UINT64_MAX, | ^~~~~~~~~~ [ 92%] Linking CXX executable graphdump cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -o graphdump -ltbb -lpthread make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target graphdump [100%] Linking CXX executable twopaco cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/cmake -E cmake_link_script CMakeFiles/twopaco.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o CMakeFiles/twopaco.dir/constructor.cpp.o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o CMakeFiles/twopaco.dir/compressedstring.cpp.o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o CMakeFiles/twopaco.dir/test.cpp.o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o CMakeFiles/twopaco.dir/common.cpp.o -o twopaco -ltbb -ltbbmalloc -ltbbmalloc_proxy -lpthread make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' [100%] Built target twopaco make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' obj-*/graphconstructor/twopaco --test -f 34 example/example.fa ERROR at chr 0 pos 21, 1 != 0 ERROR at chr 0 pos 50, 1 != 0 ERROR at chr 0 pos 61, 1 != 0 ERROR at chr 0 pos 183, 1 != 0 ERROR at chr 0 pos 197, 1 != 0 ERROR at chr 0 pos 248, 1 != 0 ERROR at chr 0 pos 375, 1 != 0 ERROR at chr 0 pos 478, 1 != 0 ERROR at chr 0 pos 514, 1 != 0 ERROR at chr 0 pos 567, 1 != 0 ERROR at chr 0 pos 786, 1 != 0 ERROR at chr 0 pos 942, 1 != 0 ERROR at chr 0 pos 957, 1 != 0 ERROR at chr 0 pos 1275, 1 != 0 ERROR at chr 0 pos 1483, 1 != 0 ERROR at chr 0 pos 1592, 1 != 0 ERROR at chr 0 pos 1605, 1 != 0 ERROR at chr 0 pos 1837, 1 != 0 ERROR at chr 0 pos 1957, 1 != 0 ERROR at chr 0 pos 2109, 1 != 0 ERROR at chr 0 pos 2331, 1 != 0 ERROR at chr 0 pos 2392, 1 != 0 ERROR at chr 0 pos 2453, 1 != 0 ERROR at chr 0 pos 2520, 1 != 0 ERROR at chr 0 pos 2573, 1 != 0 ERROR at chr 0 pos 2608, 1 != 0 ERROR at chr 0 pos 2655, 1 != 0 ERROR at chr 0 pos 2693, 1 != 0 ERROR at chr 0 pos 2881, 1 != 0 ERROR at chr 0 pos 2904, 1 != 0 ERROR at chr 0 pos 3476, 1 != 0 ERROR at chr 0 pos 3499, 1 != 0 ERROR at chr 0 pos 3502, 1 != 0 ERROR at chr 0 pos 3649, 1 != 0 ERROR at chr 0 pos 3686, 1 != 0 ERROR at chr 0 pos 3827, 1 != 0 ERROR at chr 0 pos 3936, 1 != 0 ERROR at chr 0 pos 3941, 1 != 0 ERROR at chr 0 pos 4053, 1 != 0 ERROR at chr 0 pos 4249, 1 != 0 ERROR at chr 0 pos 4317, 1 != 0 ERROR at chr 0 pos 4352, 1 != 0 ERROR at chr 0 pos 4362, 1 != 0 ERROR at chr 0 pos 4368, 1 != 0 ERROR at chr 0 pos 4457, 1 != 0 ERROR at chr 0 pos 4501, 1 != 0 ERROR at chr 0 pos 4555, 1 != 0 ERROR at chr 0 pos 4563, 1 != 0 ERROR at chr 0 pos 4679, 1 != 0 ERROR at chr 0 pos 4745, 1 != 0 ERROR at chr 0 pos 4750, 1 != 0 ERROR at chr 0 pos 4803, 1 != 0 ERROR at chr 0 pos 4904, 1 != 0 ERROR at chr 0 pos 4911, 1 != 0 ERROR at chr 0 pos 5030, 1 != 0 ERROR at chr 0 pos 5083, 1 != 0 ERROR at chr 0 pos 5089, 1 != 0 ERROR at chr 0 pos 5171, 1 != 0 ERROR at chr 0 pos 5289, 1 != 0 ERROR at chr 0 pos 5359, 1 != 0 ERROR at chr 0 pos 5462, 1 != 0 ERROR at chr 0 pos 5676, 1 != 0 ERROR at chr 0 pos 5713, 1 != 0 ERROR at chr 0 pos 5724, 1 != 0 ERROR at chr 0 pos 5895, 1 != 0 ERROR at chr 0 pos 5916, 1 != 0 ERROR at chr 0 pos 5990, 1 != 0 ERROR at chr 0 pos 6201, 1 != 0 ERROR at chr 0 pos 6226, 1 != 0 ERROR at chr 0 pos 6306, 1 != 0 ERROR at chr 0 pos 6414, 1 != 0 ERROR at chr 0 pos 6517, 1 != 0 ERROR at chr 0 pos 6547, 1 != 0 ERROR at chr 0 pos 6595, 1 != 0 ERROR at chr 0 pos 6720, 1 != 0 ERROR at chr 0 pos 6773, 1 != 0 ERROR at chr 0 pos 7182, 1 != 0 ERROR at chr 0 pos 7198, 1 != 0 ERROR at chr 0 pos 7226, 1 != 0 ERROR at chr 0 pos 7315, 1 != 0 ERROR at chr 0 pos 7654, 1 != 0 ERROR at chr 0 pos 7733, 1 != 0 ERROR at chr 0 pos 7738, 1 != 0 ERROR at chr 0 pos 7944, 1 != 0 ERROR at chr 0 pos 7957, 1 != 0 ERROR at chr 0 pos 8229, 1 != 0 ERROR at chr 0 pos 8257, 1 != 0 ERROR at chr 0 pos 8309, 1 != 0 ERROR at chr 0 pos 8356, 1 != 0 ERROR at chr 0 pos 8426, 1 != 0 ERROR at chr 0 pos 8529, 1 != 0 ERROR at chr 0 pos 8753, 1 != 0 ERROR at chr 1 pos 22, 1 != 0 ERROR at chr 1 pos 34, 1 != 0 ERROR at chr 1 pos 51, 1 != 0 ERROR at chr 1 pos 62, 1 != 0 ERROR at chr 1 pos 184, 1 != 0 ERROR at chr 1 pos 198, 1 != 0 ERROR at chr 1 pos 246, 1 != 0 ERROR at chr 1 pos 376, 1 != 0 ERROR at chr 1 pos 415, 1 != 0 ERROR at chr 1 pos 516, 1 != 0 ERROR at chr 1 pos 569, 1 != 0 ERROR at chr 1 pos 728, 1 != 0 ERROR at chr 1 pos 789, 1 != 0 ERROR at chr 1 pos 945, 1 != 0 ERROR at chr 1 pos 960, 1 != 0 ERROR at chr 1 pos 1115, 1 != 0 ERROR at chr 1 pos 1278, 1 != 0 ERROR at chr 1 pos 1338, 1 != 0 ERROR at chr 1 pos 1367, 1 != 0 ERROR at chr 1 pos 1481, 1 != 0 ERROR at chr 1 pos 1588, 1 != 0 ERROR at chr 1 pos 1600, 1 != 0 ERROR at chr 1 pos 1833, 1 != 0 ERROR at chr 1 pos 1951, 1 != 0 ERROR at chr 1 pos 2104, 1 != 0 ERROR at chr 1 pos 2208, 1 != 0 ERROR at chr 1 pos 2391, 1 != 0 ERROR at chr 1 pos 2452, 1 != 0 ERROR at chr 1 pos 2517, 1 != 0 ERROR at chr 1 pos 2607, 1 != 0 ERROR at chr 1 pos 2655, 1 != 0 ERROR at chr 1 pos 2688, 1 != 0 ERROR at chr 1 pos 2689, 1 != 0 ERROR at chr 1 pos 2693, 1 != 0 ERROR at chr 1 pos 2716, 1 != 0 ERROR at chr 1 pos 2880, 1 != 0 ERROR at chr 1 pos 2903, 1 != 0 ERROR at chr 1 pos 2913, 1 != 0 ERROR at chr 1 pos 3015, 1 != 0 ERROR at chr 1 pos 3113, 1 != 0 ERROR at chr 1 pos 3360, 1 != 0 ERROR at chr 1 pos 3483, 1 != 0 ERROR at chr 1 pos 3510, 1 != 0 ERROR at chr 1 pos 3659, 1 != 0 ERROR at chr 1 pos 3838, 1 != 0 ERROR at chr 1 pos 3950, 1 != 0 ERROR at chr 1 pos 3955, 1 != 0 ERROR at chr 1 pos 4020, 1 != 0 ERROR at chr 1 pos 4316, 1 != 0 ERROR at chr 1 pos 4333, 1 != 0 ERROR at chr 1 pos 4349, 1 != 0 ERROR at chr 1 pos 4368, 1 != 0 ERROR at chr 1 pos 4378, 1 != 0 ERROR at chr 1 pos 4576, 1 != 0 ERROR at chr 1 pos 4606, 1 != 0 ERROR at chr 1 pos 4607, 1 != 0 ERROR at chr 1 pos 4693, 1 != 0 ERROR at chr 1 pos 4761, 1 != 0 ERROR at chr 1 pos 4766, 1 != 0 ERROR at chr 1 pos 4910, 1 != 0 ERROR at chr 1 pos 4919, 1 != 0 ERROR at chr 1 pos 4926, 1 != 0 ERROR at chr 1 pos 4938, 1 != 0 ERROR at chr 1 pos 4955, 1 != 0 ERROR at chr 1 pos 5043, 1 != 0 ERROR at chr 1 pos 5096, 1 != 0 ERROR at chr 1 pos 5102, 1 != 0 ERROR at chr 1 pos 5133, 1 != 0 ERROR at chr 1 pos 5185, 1 != 0 ERROR at chr 1 pos 5304, 1 != 0 ERROR at chr 1 pos 5375, 1 != 0 ERROR at chr 1 pos 5695, 1 != 0 ERROR at chr 1 pos 5734, 1 != 0 ERROR at chr 1 pos 5745, 1 != 0 ERROR at chr 1 pos 5932, 1 != 0 ERROR at chr 1 pos 6006, 1 != 0 ERROR at chr 1 pos 6225, 1 != 0 ERROR at chr 1 pos 6326, 1 != 0 ERROR at chr 1 pos 6434, 1 != 0 ERROR at chr 1 pos 6537, 1 != 0 ERROR at chr 1 pos 6614, 1 != 0 ERROR at chr 1 pos 6731, 1 != 0 ERROR at chr 1 pos 6742, 1 != 0 ERROR at chr 1 pos 6785, 1 != 0 ERROR at chr 1 pos 6787, 1 != 0 ERROR at chr 1 pos 6793, 1 != 0 ERROR at chr 1 pos 6821, 1 != 0 ERROR at chr 1 pos 7037, 1 != 0 ERROR at chr 1 pos 7098, 1 != 0 ERROR at chr 1 pos 7197, 1 != 0 ERROR at chr 1 pos 7242, 1 != 0 ERROR at chr 1 pos 7332, 1 != 0 ERROR at chr 1 pos 7365, 1 != 0 ERROR at chr 1 pos 7673, 1 != 0 ERROR at chr 1 pos 7752, 1 != 0 ERROR at chr 1 pos 7757, 1 != 0 ERROR at chr 1 pos 7816, 1 != 0 ERROR at chr 1 pos 7969, 1 != 0 ERROR at chr 1 pos 7982, 1 != 0 ERROR at chr 1 pos 8178, 1 != 0 ERROR at chr 1 pos 8253, 1 != 0 ERROR at chr 1 pos 8382, 1 != 0 ERROR at chr 1 pos 8451, 1 != 0 ERROR at chr 1 pos 8784, 1 != 0 ERROR at chr 2 pos 18, 1 != 0 ERROR at chr 2 pos 45, 1 != 0 ERROR at chr 2 pos 56, 1 != 0 ERROR at chr 2 pos 190, 1 != 0 ERROR at chr 2 pos 240, 1 != 0 ERROR at chr 2 pos 371, 1 != 0 ERROR at chr 2 pos 473, 1 != 0 ERROR at chr 2 pos 508, 1 != 0 ERROR at chr 2 pos 562, 1 != 0 ERROR at chr 2 pos 706, 1 != 0 ERROR at chr 2 pos 754, 1 != 0 ERROR at chr 2 pos 780, 1 != 0 ERROR at chr 2 pos 929, 1 != 0 ERROR at chr 2 pos 943, 1 != 0 ERROR at chr 2 pos 1432, 1 != 0 ERROR at chr 2 pos 1548, 1 != 0 ERROR at chr 2 pos 1569, 1 != 0 ERROR at chr 2 pos 1817, 1 != 0 ERROR at chr 2 pos 1832, 1 != 0 ERROR at chr 2 pos 1939, 1 != 0 ERROR at chr 2 pos 2031, 1 != 0 ERROR at chr 2 pos 2099, 1 != 0 ERROR at chr 2 pos 2310, 1 != 0 ERROR at chr 2 pos 2429, 1 != 0 ERROR at chr 2 pos 2497, 1 != 0 ERROR at chr 2 pos 2547, 1 != 0 ERROR at chr 2 pos 2572, 1 != 0 ERROR at chr 2 pos 2581, 1 != 0 ERROR at chr 2 pos 2628, 1 != 0 ERROR at chr 2 pos 2666, 1 != 0 ERROR at chr 2 pos 2854, 1 != 0 ERROR at chr 2 pos 2894, 1 != 0 ERROR at chr 2 pos 2926, 1 != 0 ERROR at chr 2 pos 3128, 1 != 0 ERROR at chr 2 pos 3262, 1 != 0 ERROR at chr 2 pos 3445, 1 != 0 ERROR at chr 2 pos 3462, 1 != 0 ERROR at chr 2 pos 3469, 1 != 0 ERROR at chr 2 pos 3533, 1 != 0 ERROR at chr 2 pos 3622, 1 != 0 ERROR at chr 2 pos 3659, 1 != 0 ERROR at chr 2 pos 3749, 1 != 0 ERROR at chr 2 pos 3795, 1 != 0 ERROR at chr 2 pos 3846, 1 != 0 ERROR at chr 2 pos 4022, 1 != 0 ERROR at chr 2 pos 4123, 1 != 0 ERROR at chr 2 pos 4128, 1 != 0 ERROR at chr 2 pos 4332, 1 != 0 ERROR at chr 2 pos 4338, 1 != 0 ERROR at chr 2 pos 4364, 1 != 0 ERROR at chr 2 pos 4378, 1 != 0 ERROR at chr 2 pos 4426, 1 != 0 ERROR at chr 2 pos 4468, 1 != 0 ERROR at chr 2 pos 4523, 1 != 0 ERROR at chr 2 pos 4531, 1 != 0 ERROR at chr 2 pos 4712, 1 != 0 ERROR at chr 2 pos 4717, 1 != 0 ERROR at chr 2 pos 4726, 1 != 0 ERROR at chr 2 pos 4770, 1 != 0 ERROR at chr 2 pos 4836, 1 != 0 ERROR at chr 2 pos 4874, 1 != 0 ERROR at chr 2 pos 5051, 1 != 0 ERROR at chr 2 pos 5069, 1 != 0 ERROR at chr 2 pos 5103, 1 != 0 ERROR at chr 2 pos 5131, 1 != 0 ERROR at chr 2 pos 5250, 1 != 0 ERROR at chr 2 pos 5317, 1 != 0 ERROR at chr 2 pos 5353, 1 != 0 ERROR at chr 2 pos 5422, 1 != 0 ERROR at chr 2 pos 5548, 1 != 0 ERROR at chr 2 pos 5633, 1 != 0 ERROR at chr 2 pos 5682, 1 != 0 ERROR at chr 2 pos 5745, 1 != 0 ERROR at chr 2 pos 5856, 1 != 0 ERROR at chr 2 pos 5878, 1 != 0 ERROR at chr 2 pos 5955, 1 != 0 ERROR at chr 2 pos 6162, 1 != 0 ERROR at chr 2 pos 6187, 1 != 0 ERROR at chr 2 pos 6264, 1 != 0 ERROR at chr 2 pos 6368, 1 != 0 ERROR at chr 2 pos 6471, 1 != 0 ERROR at chr 2 pos 6500, 1 != 0 ERROR at chr 2 pos 6563, 1 != 0 ERROR at chr 2 pos 6673, 1 != 0 ERROR at chr 2 pos 6726, 1 != 0 ERROR at chr 2 pos 6838, 1 != 0 ERROR at chr 2 pos 7052, 1 != 0 ERROR at chr 2 pos 7072, 1 != 0 ERROR at chr 2 pos 7180, 1 != 0 ERROR at chr 2 pos 7270, 1 != 0 ERROR at chr 2 pos 7280, 1 != 0 ERROR at chr 2 pos 7495, 1 != 0 ERROR at chr 2 pos 7506, 1 != 0 ERROR at chr 2 pos 7611, 1 != 0 ERROR at chr 2 pos 7660, 1 != 0 ERROR at chr 2 pos 7692, 1 != 0 ERROR at chr 2 pos 7737, 1 != 0 ERROR at chr 2 pos 7916, 1 != 0 ERROR at chr 2 pos 8184, 1 != 0 ERROR at chr 2 pos 8356, 1 != 0 ERROR at chr 2 pos 8379, 1 != 0 ERROR at chr 2 pos 8685, 1 != 0 ERROR at chr 2 pos 8708, 1 != 0 ERROR at chr 2 pos 8775, 1 != 0 ERROR at chr 3 pos 21, 1 != 0 ERROR at chr 3 pos 49, 1 != 0 ERROR at chr 3 pos 61, 1 != 0 ERROR at chr 3 pos 184, 1 != 0 ERROR at chr 3 pos 198, 1 != 0 ERROR at chr 3 pos 247, 1 != 0 ERROR at chr 3 pos 273, 1 != 0 ERROR at chr 3 pos 477, 1 != 0 ERROR at chr 3 pos 514, 1 != 0 ERROR at chr 3 pos 784, 1 != 0 ERROR at chr 3 pos 811, 1 != 0 ERROR at chr 3 pos 955, 1 != 0 ERROR at chr 3 pos 1004, 1 != 0 ERROR at chr 3 pos 1191, 1 != 0 ERROR at chr 3 pos 1194, 1 != 0 ERROR at chr 3 pos 1327, 1 != 0 ERROR at chr 3 pos 1452, 1 != 0 ERROR at chr 3 pos 1477, 1 != 0 ERROR at chr 3 pos 1498, 1 != 0 ERROR at chr 3 pos 1567, 1 != 0 ERROR at chr 3 pos 1583, 1 != 0 ERROR at chr 3 pos 1596, 1 != 0 ERROR at chr 3 pos 1773, 1 != 0 ERROR at chr 3 pos 1824, 1 != 0 ERROR at chr 3 pos 1944, 1 != 0 ERROR at chr 3 pos 2441, 1 != 0 ERROR at chr 3 pos 2506, 1 != 0 ERROR at chr 3 pos 2556, 1 != 0 ERROR at chr 3 pos 2592, 1 != 0 ERROR at chr 3 pos 2677, 1 != 0 ERROR at chr 3 pos 2866, 1 != 0 ERROR at chr 3 pos 2888, 1 != 0 ERROR at chr 3 pos 3201, 1 != 0 ERROR at chr 3 pos 3371, 1 != 0 ERROR at chr 3 pos 3491, 1 != 0 ERROR at chr 3 pos 3551, 1 != 0 ERROR at chr 3 pos 3556, 1 != 0 ERROR at chr 3 pos 3641, 1 != 0 ERROR at chr 3 pos 3678, 1 != 0 ERROR at chr 3 pos 3836, 1 != 0 ERROR at chr 3 pos 3871, 1 != 0 ERROR at chr 3 pos 3927, 1 != 0 ERROR at chr 3 pos 3932, 1 != 0 ERROR at chr 3 pos 4239, 1 != 0 ERROR at chr 3 pos 4269, 1 != 0 ERROR at chr 3 pos 4283, 1 != 0 ERROR at chr 3 pos 4337, 1 != 0 ERROR at chr 3 pos 4347, 1 != 0 ERROR at chr 3 pos 4386, 1 != 0 ERROR at chr 3 pos 4423, 1 != 0 ERROR at chr 3 pos 4437, 1 != 0 ERROR at chr 3 pos 4533, 1 != 0 ERROR at chr 3 pos 4541, 1 != 0 ERROR at chr 3 pos 4557, 1 != 0 ERROR at chr 3 pos 4656, 1 != 0 ERROR at chr 3 pos 4783, 1 != 0 ERROR at chr 3 pos 4822, 1 != 0 ERROR at chr 3 pos 4886, 1 != 0 ERROR at chr 3 pos 4893, 1 != 0 ERROR at chr 3 pos 5014, 1 != 0 ERROR at chr 3 pos 5067, 1 != 0 ERROR at chr 3 pos 5073, 1 != 0 ERROR at chr 3 pos 5101, 1 != 0 ERROR at chr 3 pos 5154, 1 != 0 ERROR at chr 3 pos 5341, 1 != 0 ERROR at chr 3 pos 5443, 1 != 0 ERROR at chr 3 pos 5654, 1 != 0 ERROR at chr 3 pos 5692, 1 != 0 ERROR at chr 3 pos 5703, 1 != 0 ERROR at chr 3 pos 5875, 1 != 0 ERROR at chr 3 pos 5895, 1 != 0 ERROR at chr 3 pos 5970, 1 != 0 ERROR at chr 3 pos 5975, 1 != 0 ERROR at chr 3 pos 6178, 1 != 0 ERROR at chr 3 pos 6204, 1 != 0 ERROR at chr 3 pos 6248, 1 != 0 ERROR at chr 3 pos 6267, 1 != 0 ERROR at chr 3 pos 6387, 1 != 0 ERROR at chr 3 pos 6429, 1 != 0 ERROR at chr 3 pos 6488, 1 != 0 ERROR at chr 3 pos 6519, 1 != 0 ERROR at chr 3 pos 6565, 1 != 0 ERROR at chr 3 pos 6693, 1 != 0 ERROR at chr 3 pos 6746, 1 != 0 ERROR at chr 3 pos 6752, 1 != 0 ERROR at chr 3 pos 7152, 1 != 0 ERROR at chr 3 pos 7168, 1 != 0 ERROR at chr 3 pos 7196, 1 != 0 ERROR at chr 3 pos 7285, 1 != 0 ERROR at chr 3 pos 7365, 1 != 0 ERROR at chr 3 pos 7382, 1 != 0 ERROR at chr 3 pos 7514, 1 != 0 ERROR at chr 3 pos 7709, 1 != 0 ERROR at chr 3 pos 7849, 1 != 0 ERROR at chr 3 pos 7905, 1 != 0 ERROR at chr 3 pos 7914, 1 != 0 ERROR at chr 3 pos 8184, 1 != 0 ERROR at chr 3 pos 8195, 1 != 0 ERROR at chr 3 pos 8265, 1 != 0 ERROR at chr 3 pos 8323, 1 != 0 ERROR at chr 3 pos 8498, 1 != 0 ERROR at chr 3 pos 8522, 1 != 0 ERROR at chr 3 pos 8527, 1 != 0 ERROR at chr 3 pos 8711, 1 != 0 ERROR at chr 3 pos 8730, 1 != 0 ERROR at chr 3 pos 8903, 1 != 0 ERROR at chr 4 pos 21, 1 != 0 ERROR at chr 4 pos 49, 1 != 0 ERROR at chr 4 pos 61, 1 != 0 ERROR at chr 4 pos 192, 1 != 0 ERROR at chr 4 pos 204, 1 != 0 ERROR at chr 4 pos 371, 1 != 0 ERROR at chr 4 pos 431, 1 != 0 ERROR at chr 4 pos 474, 1 != 0 ERROR at chr 4 pos 563, 1 != 0 ERROR at chr 4 pos 706, 1 != 0 ERROR at chr 4 pos 782, 1 != 0 ERROR at chr 4 pos 849, 1 != 0 ERROR at chr 4 pos 920, 1 != 0 ERROR at chr 4 pos 933, 1 != 0 ERROR at chr 4 pos 947, 1 != 0 ERROR at chr 4 pos 1002, 1 != 0 ERROR at chr 4 pos 1055, 1 != 0 ERROR at chr 4 pos 1070, 1 != 0 ERROR at chr 4 pos 1266, 1 != 0 ERROR at chr 4 pos 1472, 1 != 0 ERROR at chr 4 pos 1580, 1 != 0 ERROR at chr 4 pos 1593, 1 != 0 ERROR at chr 4 pos 1623, 1 != 0 ERROR at chr 4 pos 1704, 1 != 0 ERROR at chr 4 pos 1707, 1 != 0 ERROR at chr 4 pos 1793, 1 != 0 ERROR at chr 4 pos 1810, 1 != 0 ERROR at chr 4 pos 1823, 1 != 0 ERROR at chr 4 pos 1845, 1 != 0 ERROR at chr 4 pos 1874, 1 != 0 ERROR at chr 4 pos 1940, 1 != 0 ERROR at chr 4 pos 2079, 1 != 0 ERROR at chr 4 pos 2093, 1 != 0 ERROR at chr 4 pos 2157, 1 != 0 ERROR at chr 4 pos 2305, 1 != 0 ERROR at chr 4 pos 2316, 1 != 0 ERROR at chr 4 pos 2344, 1 != 0 ERROR at chr 4 pos 2507, 1 != 0 ERROR at chr 4 pos 2563, 1 != 0 ERROR at chr 4 pos 2646, 1 != 0 ERROR at chr 4 pos 2683, 1 != 0 ERROR at chr 4 pos 2735, 1 != 0 ERROR at chr 4 pos 2813, 1 != 0 ERROR at chr 4 pos 2873, 1 != 0 ERROR at chr 4 pos 3475, 1 != 0 ERROR at chr 4 pos 3499, 1 != 0 ERROR at chr 4 pos 3502, 1 != 0 ERROR at chr 4 pos 3594, 1 != 0 ERROR at chr 4 pos 3833, 1 != 0 ERROR at chr 4 pos 3941, 1 != 0 ERROR at chr 4 pos 3946, 1 != 0 ERROR at chr 4 pos 4055, 1 != 0 ERROR at chr 4 pos 4086, 1 != 0 ERROR at chr 4 pos 4254, 1 != 0 ERROR at chr 4 pos 4278, 1 != 0 ERROR at chr 4 pos 4357, 1 != 0 ERROR at chr 4 pos 4367, 1 != 0 ERROR at chr 4 pos 4373, 1 != 0 ERROR at chr 4 pos 4462, 1 != 0 ERROR at chr 4 pos 4507, 1 != 0 ERROR at chr 4 pos 4569, 1 != 0 ERROR at chr 4 pos 4685, 1 != 0 ERROR at chr 4 pos 4753, 1 != 0 ERROR at chr 4 pos 4758, 1 != 0 ERROR at chr 4 pos 4810, 1 != 0 ERROR at chr 4 pos 5031, 1 != 0 ERROR at chr 4 pos 5037, 1 != 0 ERROR at chr 4 pos 5038, 1 != 0 ERROR at chr 4 pos 5084, 1 != 0 ERROR at chr 4 pos 5090, 1 != 0 ERROR at chr 4 pos 5170, 1 != 0 ERROR at chr 4 pos 5239, 1 != 0 ERROR at chr 4 pos 5290, 1 != 0 ERROR at chr 4 pos 5335, 1 != 0 ERROR at chr 4 pos 5358, 1 != 0 ERROR at chr 4 pos 5459, 1 != 0 ERROR at chr 4 pos 5496, 1 != 0 ERROR at chr 4 pos 5716, 1 != 0 ERROR at chr 4 pos 5727, 1 != 0 ERROR at chr 4 pos 5900, 1 != 0 ERROR at chr 4 pos 5917, 1 != 0 ERROR at chr 4 pos 5995, 1 != 0 ERROR at chr 4 pos 6204, 1 != 0 ERROR at chr 4 pos 6231, 1 != 0 ERROR at chr 4 pos 6299, 1 != 0 ERROR at chr 4 pos 6311, 1 != 0 ERROR at chr 4 pos 6333, 1 != 0 ERROR at chr 4 pos 6419, 1 != 0 ERROR at chr 4 pos 6523, 1 != 0 ERROR at chr 4 pos 6555, 1 != 0 ERROR at chr 4 pos 6603, 1 != 0 ERROR at chr 4 pos 6777, 1 != 0 ERROR at chr 4 pos 7065, 1 != 0 ERROR at chr 4 pos 7188, 1 != 0 ERROR at chr 4 pos 7203, 1 != 0 ERROR at chr 4 pos 7211, 1 != 0 ERROR at chr 4 pos 7231, 1 != 0 ERROR at chr 4 pos 7322, 1 != 0 ERROR at chr 4 pos 7706, 1 != 0 ERROR at chr 4 pos 7743, 1 != 0 ERROR at chr 4 pos 7748, 1 != 0 ERROR at chr 4 pos 7821, 1 != 0 ERROR at chr 4 pos 7953, 1 != 0 ERROR at chr 4 pos 8230, 1 != 0 ERROR at chr 4 pos 8259, 1 != 0 ERROR at chr 4 pos 8312, 1 != 0 ERROR at chr 4 pos 8331, 1 != 0 ERROR at chr 4 pos 8360, 1 != 0 ERROR at chr 4 pos 8429, 1 != 0 ERROR at chr 4 pos 8532, 1 != 0 ERROR at chr 4 pos 8715, 1 != 0 ERROR at chr 4 pos 8762, 1 != 0 ERROR at chr 4 pos 8846, 1 != 0 ERROR at chr 4 pos 8851, 1 != 0 ERROR at chr 4 pos 8970, 1 != 0 ERROR at chr 5 pos 22, 1 != 0 ERROR at chr 5 pos 51, 1 != 0 ERROR at chr 5 pos 62, 1 != 0 ERROR at chr 5 pos 188, 1 != 0 ERROR at chr 5 pos 201, 1 != 0 ERROR at chr 5 pos 247, 1 != 0 ERROR at chr 5 pos 377, 1 != 0 ERROR at chr 5 pos 478, 1 != 0 ERROR at chr 5 pos 514, 1 != 0 ERROR at chr 5 pos 561, 1 != 0 ERROR at chr 5 pos 565, 1 != 0 ERROR at chr 5 pos 951, 1 != 0 ERROR at chr 5 pos 967, 1 != 0 ERROR at chr 5 pos 1127, 1 != 0 ERROR at chr 5 pos 1286, 1 != 0 ERROR at chr 5 pos 1350, 1 != 0 ERROR at chr 5 pos 1496, 1 != 0 ERROR at chr 5 pos 1506, 1 != 0 ERROR at chr 5 pos 1516, 1 != 0 ERROR at chr 5 pos 1606, 1 != 0 ERROR at chr 5 pos 1619, 1 != 0 ERROR at chr 5 pos 1851, 1 != 0 ERROR at chr 5 pos 1965, 1 != 0 ERROR at chr 5 pos 2116, 1 != 0 ERROR at chr 5 pos 2193, 1 != 0 ERROR at chr 5 pos 2403, 1 != 0 ERROR at chr 5 pos 2462, 1 != 0 ERROR at chr 5 pos 2529, 1 != 0 ERROR at chr 5 pos 2583, 1 != 0 ERROR at chr 5 pos 2610, 1 != 0 ERROR at chr 5 pos 2619, 1 != 0 ERROR at chr 5 pos 2665, 1 != 0 ERROR at chr 5 pos 2702, 1 != 0 ERROR at chr 5 pos 2729, 1 != 0 ERROR at chr 5 pos 2737, 1 != 0 ERROR at chr 5 pos 2895, 1 != 0 ERROR at chr 5 pos 2918, 1 != 0 ERROR at chr 5 pos 3488, 1 != 0 ERROR at chr 5 pos 3515, 1 != 0 ERROR at chr 5 pos 3549, 1 != 0 ERROR at chr 5 pos 3618, 1 != 0 ERROR at chr 5 pos 3702, 1 != 0 ERROR at chr 5 pos 3817, 1 != 0 ERROR at chr 5 pos 3841, 1 != 0 ERROR at chr 5 pos 3949, 1 != 0 ERROR at chr 5 pos 3954, 1 != 0 ERROR at chr 5 pos 4067, 1 != 0 ERROR at chr 5 pos 4261, 1 != 0 ERROR at chr 5 pos 4307, 1 != 0 ERROR at chr 5 pos 4331, 1 != 0 ERROR at chr 5 pos 4367, 1 != 0 ERROR at chr 5 pos 4377, 1 != 0 ERROR at chr 5 pos 4410, 1 != 0 ERROR at chr 5 pos 4414, 1 != 0 ERROR at chr 5 pos 4472, 1 != 0 ERROR at chr 5 pos 4527, 1 != 0 ERROR at chr 5 pos 4572, 1 != 0 ERROR at chr 5 pos 4580, 1 != 0 ERROR at chr 5 pos 4700, 1 != 0 ERROR at chr 5 pos 4767, 1 != 0 ERROR at chr 5 pos 4772, 1 != 0 ERROR at chr 5 pos 4825, 1 != 0 ERROR at chr 5 pos 4913, 1 != 0 ERROR at chr 5 pos 4935, 1 != 0 ERROR at chr 5 pos 4975, 1 != 0 ERROR at chr 5 pos 5056, 1 != 0 ERROR at chr 5 pos 5114, 1 != 0 ERROR at chr 5 pos 5196, 1 != 0 ERROR at chr 5 pos 5383, 1 != 0 ERROR at chr 5 pos 5486, 1 != 0 ERROR at chr 5 pos 5689, 1 != 0 ERROR at chr 5 pos 5698, 1 != 0 ERROR at chr 5 pos 5735, 1 != 0 ERROR at chr 5 pos 5746, 1 != 0 ERROR at chr 5 pos 5910, 1 != 0 ERROR at chr 5 pos 5931, 1 != 0 ERROR at chr 5 pos 6005, 1 != 0 ERROR at chr 5 pos 6241, 1 != 0 ERROR at chr 5 pos 6254, 1 != 0 ERROR at chr 5 pos 6320, 1 != 0 ERROR at chr 5 pos 6393, 1 != 0 ERROR at chr 5 pos 6538, 1 != 0 ERROR at chr 5 pos 6569, 1 != 0 ERROR at chr 5 pos 6743, 1 != 0 ERROR at chr 5 pos 6795, 1 != 0 ERROR at chr 5 pos 6943, 1 != 0 ERROR at chr 5 pos 7018, 1 != 0 ERROR at chr 5 pos 7208, 1 != 0 ERROR at chr 5 pos 7339, 1 != 0 ERROR at chr 5 pos 7964, 1 != 0 ERROR at chr 5 pos 7977, 1 != 0 ERROR at chr 5 pos 8278, 1 != 0 ERROR at chr 5 pos 8379, 1 != 0 ERROR at chr 5 pos 8556, 1 != 0 ERROR at chr 5 pos 8781, 1 != 0 ERROR at chr 5 pos 8811, 1 != 0 ERROR at chr 5 pos 8986, 1 != 0 Test # 0 FAILED obj-*/graphconstructor/twopaco -f 20 -k 11 example/example.fa -o example/example.dbg Threads = 1 Vertex length = 11 Hash functions = 5 Filter size = 1048576 Capacity = 1 Files: example/example.fa -------------------------------------------------------------------------------- Round 0, 0:1048576 Pass Filling Filtering 1 0 0 2 0 0 True junctions count = 7 False junctions count = 0 Hash table size = 7 Candidate marks count = 16 -------------------------------------------------------------------------------- Reallocating bifurcations time: 0 True marks count: 16 Edges construction time: 0 -------------------------------------------------------------------------------- Distinct junctions = 7 TwoPaCo::buildGraphMain:: allocated with scalable_malloc; freeing. TwoPaCo::buildGraphMain:: Calling scalable_allocation_command(TBBMALLOC_CLEAN_ALL_BUFFERS, 0); obj-*/graphdump/graphdump -f dot example/example.dbg -k 11 > example/example.dot make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedir=src dh_prep -O--sourcedir=src dh_auto_install --destdir=debian/twopaco/ -O--sourcedir=src cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/graphdump -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/twopaco make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' dh_installdocs -O--sourcedir=src dh_installchangelogs -O--sourcedir=src debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_installexamples --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_installman --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_installsystemduser -O--sourcedir=src dh_perl -O--sourcedir=src dh_link -O--sourcedir=src dh_strip_nondeterminism -O--sourcedir=src dh_compress -O--sourcedir=src dh_fixperms -O--sourcedir=src debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_missing --list-missing dh_missing: warning: CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: common/dnachar.cpp exists in src but is not installed to anywhere dh_missing: warning: common/dnachar.h exists in src but is not installed to anywhere dh_missing: warning: common/junctionapi.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/Makefile exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/README.md exists in src but is not installed to anywhere (related file: "/build/reproducible-path/twopaco-1.0.0+dfsg/example/README.md") dh_missing: warning: common/ngramhashing/characterhash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/cyclichash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example2.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example3.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example4.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example64bits.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/generalhash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/mersennetwister.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/rabinkarphash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/speedtesting.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/threewisehash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/unit.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/ztimer.h exists in src but is not installed to anywhere dh_missing: warning: common/spooky/SpookyV2.cpp exists in src but is not installed to anywhere dh_missing: warning: common/spooky/SpookyV2.h exists in src but is not installed to anywhere dh_missing: warning: common/streamfastaparser.cpp exists in src but is not installed to anywhere dh_missing: warning: common/streamfastaparser.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/assemblyedgeconstructor.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/assemblyedgeconstructor.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/bifurcationstorage.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/candidateoccurence.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/common.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/common.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/compressedstring.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/compressedstring.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/concurrentbitvector.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/concurrentbitvector.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/constructor.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/test.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/test.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/vertexenumerator.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/vertexenumerator.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/vertexrollinghash.h exists in src but is not installed to anywhere dh_missing: warning: graphdump/CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: graphdump/glueGfa1.py exists in src but is not installed to anywhere dh_missing: warning: graphdump/glueGfa2.py exists in src but is not installed to anywhere dh_missing: warning: graphdump/graphdump.cpp exists in src but is not installed to anywhere dh_missing: warning: naiveconstructor/naiveconstructor.cpp exists in src but is not installed to anywhere While detecting missing files, dh_missing noted some files with a similar name to those that were missing. This warning /might/ be resolved by replacing references to the missing files with the similarly named ones that dh_missing found - assuming the content is identical. As an example, you might want to replace: * /build/reproducible-path/twopaco-1.0.0+dfsg/example/README.md with: * common/ngramhashing/README.md in a file in debian/ or as argument to one of the dh_* tools called from debian/rules. (Note it is possible the paths are not used verbatim but instead directories containing or globs matching them are used instead) Alternatively, add the missing file to debian/not-installed if it cannot and should not be used. The following debhelper tools have reported what they installed (with files per package) * dh_installdocs: twopaco (0) * dh_installexamples: twopaco (10) * dh_installman: twopaco (2) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.md.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_dwz -a -O--sourcedir=src dh_strip -a -O--sourcedir=src dh_makeshlibs -a -O--sourcedir=src dh_shlibdeps -a -O--sourcedir=src dh_installdeb -O--sourcedir=src dh_gencontrol -O--sourcedir=src dh_md5sums -O--sourcedir=src dh_builddeb -O--sourcedir=src dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_i386.deb'. dpkg-deb: building package 'twopaco-dbgsym' in '../twopaco-dbgsym_1.0.0+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../twopaco_1.0.0+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../twopaco_1.0.0+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/78862/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/78862/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/78862 and its subdirectories I: Current time: Sat May 17 15:23:30 +14 2025 I: pbuilder-time-stamp: 1747445010