I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 26 09:13:26 -12 2025 I: pbuilder-time-stamp: 1750972406 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [tandem-mass_201702011-1.dsc] I: copying [./tandem-mass_201702011.orig.tar.gz] I: copying [./tandem-mass_201702011-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Nov 18 08:20:14 2018 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./tandem-mass_201702011-1.dsc: no acceptable signature found dpkg-source: info: extracting tandem-mass in tandem-mass-201702011 dpkg-source: info: unpacking tandem-mass_201702011.orig.tar.gz dpkg-source: info: unpacking tandem-mass_201702011-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-makefile dpkg-source: info: applying fix-missing-include-string-h dpkg-source: info: applying nullptr-fixes I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/80069/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='283ad7301fd340168c74032929760fc5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='80069' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BO0qyhNs/pbuilderrc_oI30 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BO0qyhNs/b1 --logfile b1/build.log tandem-mass_201702011-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 26 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/80069/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9.20151219), dpkg-dev (>= 1.16.1~), libexpat1-dev (>= 2.0.1) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19686 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9.20151219); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libexpat1-dev (>= 2.0.1); however: Package libexpat1-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdata-optlist-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libparams-util-perl{a} libpipeline1{a} libsub-exporter-perl{a} libsub-install-perl{a} libsub-override-perl{a} libsub-prototype-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After unpacking 75.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.1-1 [98.5 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libparams-util-perl i386 1.102-3 [24.4 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libsub-install-perl all 0.929-1 [10.5 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libsub-prototype-perl i386 0.03-2+b2 [9756 B] Get: 25 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.11-1 [10.4 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.2-1 [165 kB] Fetched 19.7 MB in 0s (88.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19686 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.1-1_i386.deb ... Unpacking bsdextrautils (2.40.1-1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../19-libparams-util-perl_1.102-3_i386.deb ... Unpacking libparams-util-perl (1.102-3) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../20-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../21-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../22-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libsub-prototype-perl. Preparing to unpack .../23-libsub-prototype-perl_0.03-2+b2_i386.deb ... Unpacking libsub-prototype-perl (0.03-2+b2) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../24-libsub-override-perl_0.11-1_all.deb ... Unpacking libsub-override-perl (0.11-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../25-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../26-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../27-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../29-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../30-libxml2_2.9.14+dfsg-1.3+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../31-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../32-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../33-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../34-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../35-libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../36-libexpat1-dev_2.6.2-1_i386.deb ... Unpacking libexpat1-dev:i386 (2.6.2-1) ... Setting up libexpat1:i386 (2.6.2-1) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:i386 (2.6.2-1) ... Setting up autopoint (0.21-14) ... Setting up libparams-util-perl (1.102-3) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up groff-base (1.23.0-4) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libsub-prototype-perl (0.03-2+b2) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libsub-override-perl (0.11-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/tandem-mass-201702011/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tandem-mass_201702011-1_source.changes dpkg-buildpackage: info: source package tandem-mass dpkg-buildpackage: info: source version 1:201702011-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh_testdir dh_testroot dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ dh_clean: warning: Compatibility levels before 10 are deprecated (level 9 in use) rm -f -- debian/tandem-mass.substvars debian/files rm -fr -- debian/tandem-mass/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) rm -f bin/tandem rm -f src/*.d src/*.o rm -f build-stamp debian/rules build dh_testdir dh_prep rm -f -- debian/tandem-mass.substvars rm -fr -- debian/.debhelper/generated/tandem-mass/ debian/tandem-mass/ debian/tmp/ dh_auto_build --sourcedirectory=src --buildsystem=makefile -- -f Makefile_ubuntu dh_auto_build: warning: Compatibility levels before 10 are deprecated (level 9 in use) cd src && make -j1 -f Makefile_ubuntu make[1]: Entering directory '/build/reproducible-path/tandem-mass-201702011/src' g++ -M -g -w -O2 xmltaxonomy.cpp > xmltaxonomy.d g++ -M -g -w -O2 xmltaxonomy.cpp | sed s/\\.o/.d/ > xmltaxonomy.d g++ -M -g -w -O2 xmlparameter.cpp > xmlparameter.d g++ -M -g -w -O2 xmlparameter.cpp | sed s/\\.o/.d/ > xmlparameter.d g++ -M -g -w -O2 tandem.cpp > tandem.d g++ -M -g -w -O2 tandem.cpp | sed s/\\.o/.d/ > tandem.d g++ -M -g -w -O2 stdafx.cpp > stdafx.d g++ -M -g -w -O2 stdafx.cpp | sed s/\\.o/.d/ > stdafx.d g++ -M -g -w -O2 saxtaxhandler.cpp > saxtaxhandler.d g++ -M -g -w -O2 saxtaxhandler.cpp | sed s/\\.o/.d/ > saxtaxhandler.d g++ -M -g -w -O2 saxtandeminputhandler.cpp > saxtandeminputhandler.d g++ -M -g -w -O2 saxtandeminputhandler.cpp | sed s/\\.o/.d/ > saxtandeminputhandler.d g++ -M -g -w -O2 saxsaphandler.cpp > saxsaphandler.d g++ -M -g -w -O2 saxsaphandler.cpp | sed s/\\.o/.d/ > saxsaphandler.d g++ -M -g -w -O2 saxmzxmlhandler.cpp > saxmzxmlhandler.d g++ -M -g -w -O2 saxmzxmlhandler.cpp | sed s/\\.o/.d/ > saxmzxmlhandler.d g++ -M -g -w -O2 saxmzmlhandler.cpp > saxmzmlhandler.d g++ -M -g -w -O2 saxmzmlhandler.cpp | sed s/\\.o/.d/ > saxmzmlhandler.d g++ -M -g -w -O2 saxmzdatahandler.cpp > saxmzdatahandler.d g++ -M -g -w -O2 saxmzdatahandler.cpp | sed s/\\.o/.d/ > saxmzdatahandler.d g++ -M -g -w -O2 saxmodhandler.cpp > saxmodhandler.d g++ -M -g -w -O2 saxmodhandler.cpp | sed s/\\.o/.d/ > saxmodhandler.d g++ -M -g -w -O2 saxhandler.cpp > saxhandler.d g++ -M -g -w -O2 saxhandler.cpp | sed s/\\.o/.d/ > saxhandler.d g++ -M -g -w -O2 saxgamlhandler.cpp > saxgamlhandler.d g++ -M -g -w -O2 saxgamlhandler.cpp | sed s/\\.o/.d/ > saxgamlhandler.d g++ -M -g -w -O2 saxbiomlhandler.cpp > saxbiomlhandler.d g++ -M -g -w -O2 saxbiomlhandler.cpp | sed s/\\.o/.d/ > saxbiomlhandler.d g++ -M -g -w -O2 p3msequenceserver.cpp > p3msequenceserver.d g++ -M -g -w -O2 p3msequenceserver.cpp | sed s/\\.o/.d/ > p3msequenceserver.d g++ -M -g -w -O2 p3mprocess.cpp > p3mprocess.d g++ -M -g -w -O2 p3mprocess.cpp | sed s/\\.o/.d/ > p3mprocess.d g++ -M -g -w -O2 p3.cpp > p3.d g++ -M -g -w -O2 p3.cpp | sed s/\\.o/.d/ > p3.d g++ -M -g -w -O2 mzid_report.cpp > mzid_report.d g++ -M -g -w -O2 mzid_report.cpp | sed s/\\.o/.d/ > mzid_report.d g++ -M -g -w -O2 mxxcleavage.cpp > mxxcleavage.d g++ -M -g -w -O2 mxxcleavage.cpp | sed s/\\.o/.d/ > mxxcleavage.d g++ -M -g -w -O2 mtermmods.cpp > mtermmods.d g++ -M -g -w -O2 mtermmods.cpp | sed s/\\.o/.d/ > mtermmods.d g++ -M -g -w -O2 mspectrumcondition.cpp > mspectrumcondition.d g++ -M -g -w -O2 mspectrumcondition.cpp | sed s/\\.o/.d/ > mspectrumcondition.d g++ -M -g -w -O2 msequtilities.cpp > msequtilities.d g++ -M -g -w -O2 msequtilities.cpp | sed s/\\.o/.d/ > msequtilities.d g++ -M -g -w -O2 msequenceserver.cpp > msequenceserver.d g++ -M -g -w -O2 msequenceserver.cpp | sed s/\\.o/.d/ > msequenceserver.d g++ -M -g -w -O2 msequencecollection.cpp > msequencecollection.d g++ -M -g -w -O2 msequencecollection.cpp | sed s/\\.o/.d/ > msequencecollection.d g++ -M -g -w -O2 mscore_tandem.cpp > mscore_tandem.d g++ -M -g -w -O2 mscore_tandem.cpp | sed s/\\.o/.d/ > mscore_tandem.d g++ -M -g -w -O2 mscore.cpp > mscore.d g++ -M -g -w -O2 mscore.cpp | sed s/\\.o/.d/ > mscore.d g++ -M -g -w -O2 mreport.cpp > mreport.d g++ -M -g -w -O2 mreport.cpp | sed s/\\.o/.d/ > mreport.d g++ -M -g -w -O2 mrefine.cpp > mrefine.d g++ -M -g -w -O2 mrefine.cpp | sed s/\\.o/.d/ > mrefine.d g++ -M -g -w -O2 mprocess.cpp > mprocess.d g++ -M -g -w -O2 mprocess.cpp | sed s/\\.o/.d/ > mprocess.d g++ -M -g -w -O2 mpmods.cpp > mpmods.d g++ -M -g -w -O2 mpmods.cpp | sed s/\\.o/.d/ > mpmods.d g++ -M -g -w -O2 mplugin.cpp > mplugin.d g++ -M -g -w -O2 mplugin.cpp | sed s/\\.o/.d/ > mplugin.d g++ -M -g -w -O2 mpam.cpp > mpam.d g++ -M -g -w -O2 mpam.cpp | sed s/\\.o/.d/ > mpam.d g++ -M -g -w -O2 mbiomlreport.cpp > mbiomlreport.d g++ -M -g -w -O2 mbiomlreport.cpp | sed s/\\.o/.d/ > mbiomlreport.d g++ -M -g -w -O2 masscalc.cpp > masscalc.d g++ -M -g -w -O2 masscalc.cpp | sed s/\\.o/.d/ > masscalc.d g++ -M -g -w -O2 loadmspectrum.cpp > loadmspectrum.d g++ -M -g -w -O2 loadmspectrum.cpp | sed s/\\.o/.d/ > loadmspectrum.d g++ -M -g -w -O2 base64.cpp > base64.d g++ -M -g -w -O2 base64.cpp | sed s/\\.o/.d/ > base64.d g++ -M -g -w -O2 MSNumpress.cpp > MSNumpress.d g++ -M -g -w -O2 MSNumpress.cpp | sed s/\\.o/.d/ > MSNumpress.d g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o MSNumpress.o MSNumpress.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o base64.o base64.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loadmspectrum.o loadmspectrum.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o masscalc.o masscalc.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbiomlreport.o mbiomlreport.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mpam.o mpam.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mplugin.o mplugin.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mpmods.o mpmods.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mprocess.o mprocess.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mrefine.o mrefine.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mreport.o mreport.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mscore.o mscore.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mscore_tandem.o mscore_tandem.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msequencecollection.o msequencecollection.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msequenceserver.o msequenceserver.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msequtilities.o msequtilities.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mspectrumcondition.o mspectrumcondition.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mtermmods.o mtermmods.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mxxcleavage.o mxxcleavage.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mzid_report.o mzid_report.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p3.o p3.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p3mprocess.o p3mprocess.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p3msequenceserver.o p3msequenceserver.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxbiomlhandler.o saxbiomlhandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxgamlhandler.o saxgamlhandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxhandler.o saxhandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmodhandler.o saxmodhandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmzdatahandler.o saxmzdatahandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmzmlhandler.o saxmzmlhandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmzxmlhandler.o saxmzxmlhandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxsaphandler.o saxsaphandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxtandeminputhandler.o saxtandeminputhandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxtaxhandler.o saxtaxhandler.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdafx.o stdafx.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tandem.o tandem.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xmlparameter.o xmlparameter.cpp g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xmltaxonomy.o xmltaxonomy.cpp g++ -g -w -O2 -o ../bin/tandem MSNumpress.o base64.o loadmspectrum.o masscalc.o mbiomlreport.o mpam.o mplugin.o mpmods.o mprocess.o mrefine.o mreport.o mscore.o mscore_tandem.o msequencecollection.o msequenceserver.o msequtilities.o mspectrumcondition.o mtermmods.o mxxcleavage.o mzid_report.o p3.o p3mprocess.o p3msequenceserver.o saxbiomlhandler.o saxgamlhandler.o saxhandler.o saxmodhandler.o saxmzdatahandler.o saxmzmlhandler.o saxmzxmlhandler.o saxsaphandler.o saxtandeminputhandler.o saxtaxhandler.o stdafx.o tandem.o xmlparameter.o xmltaxonomy.o -lpthread -L/usr/lib -lm -lexpat make[1]: Leaving directory '/build/reproducible-path/tandem-mass-201702011/src' touch build-stamp fakeroot debian/rules binary dh_testdir dh_testroot dh_installchangelogs dh_installchangelogs: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/tandem-mass/usr/share/doc/tandem-mass install -p -m0644 debian/.debhelper/generated/tandem-mass/dh_installchangelogs.dch.trimmed debian/tandem-mass/usr/share/doc/tandem-mass/changelog.Debian dh_installdocs dh_installdocs: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -p -m0644 debian/copyright debian/tandem-mass/usr/share/doc/tandem-mass/copyright dh_installexamples dh_installexamples: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_install dh_install: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/tandem-mass/usr/bin cp --reflink=auto -a ./bin/tandem debian/tandem-mass/usr/bin/ dh_installman dh_installman: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/tandem-mass/usr/share/man/man1/ install -p -m0644 ./debian/tandem.1 debian/tandem-mass/usr/share/man/man1/tandem.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tandem-mass/usr/share/man/man1/tandem.1 mv debian/tandem-mass/usr/share/man/man1/tandem.1.dh-new debian/tandem-mass/usr/share/man/man1/tandem.1 chmod 0644 -- debian/tandem-mass/usr/share/man/man1/tandem.1 dh_lintian dh_lintian: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/tandem-mass/usr/share/lintian/overrides install -p -m0644 debian/tandem-mass.lintian-overrides debian/tandem-mass/usr/share/lintian/overrides/tandem-mass dh_strip -a dh_strip: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/tandem-mass/usr/bin/tandem debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/e5/0c65300049c735c52c45eee2843aeb52d60dcf.debug chmod 0644 -- debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/e5/0c65300049c735c52c45eee2843aeb52d60dcf.debug chown 0:0 -- debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/e5/0c65300049c735c52c45eee2843aeb52d60dcf.debug strip --remove-section=.comment --remove-section=.note debian/tandem-mass/usr/bin/tandem objcopy --add-gnu-debuglink debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/e5/0c65300049c735c52c45eee2843aeb52d60dcf.debug debian/tandem-mass/usr/bin/tandem install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/usr/share/doc ln -s tandem-mass debian/.debhelper/tandem-mass/dbgsym-root/usr/share/doc/tandem-mass-dbgsym install -m0755 -d debian/.debhelper/tandem-mass dh_compress dh_compress: warning: Compatibility levels before 10 are deprecated (level 9 in use) cd debian/tandem-mass chmod a-x usr/share/doc/tandem-mass/changelog.Debian usr/share/man/man1/tandem.1 gzip -9nf usr/share/doc/tandem-mass/changelog.Debian usr/share/man/man1/tandem.1 cd '/build/reproducible-path/tandem-mass-201702011' dh_fixperms find debian/tandem-mass -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/tandem-mass ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tandem-mass/usr/share/doc -type f -a -true -a ! -regex 'debian/tandem-mass/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tandem-mass/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tandem-mass/usr/share/man debian/tandem-mass/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tandem-mass -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tandem-mass/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_installdeb dh_installdeb: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/tandem-mass/DEBIAN dh_shlibdeps dh_shlibdeps: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/tandem-mass/DEBIAN dpkg-shlibdeps -Tdebian/tandem-mass.substvars debian/tandem-mass/usr/bin/tandem dh_gencontrol dh_gencontrol: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/tandem-mass/DEBIAN echo misc:Depends= >> debian/tandem-mass.substvars echo misc:Pre-Depends= >> debian/tandem-mass.substvars install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN dpkg-gencontrol -ptandem-mass -ldebian/changelog -Tdebian/tandem-mass.substvars -cdebian/control -Pdebian/.debhelper/tandem-mass/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tandem-mass-dbgsym "-DDepends=tandem-mass (= \${binary:Version})" "-DDescription=debug symbols for tandem-mass" -DBuild-Ids=e50c65300049c735c52c45eee2843aeb52d60dcf -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptandem-mass -ldebian/changelog -Tdebian/tandem-mass.substvars -cdebian/control -Pdebian/tandem-mass chmod 0644 -- debian/tandem-mass/DEBIAN/control chown 0:0 -- debian/tandem-mass/DEBIAN/control dh_md5sums install -m0755 -d debian/tandem-mass/DEBIAN cd debian/tandem-mass >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tandem-mass/DEBIAN/md5sums chown 0:0 -- debian/tandem-mass/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN cd debian/.debhelper/tandem-mass/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/tandem-mass .. dpkg-deb --root-owner-group --build debian/.debhelper/tandem-mass/dbgsym-root .. dpkg-deb: building package 'tandem-mass' in '../tandem-mass_201702011-1_i386.deb'. dpkg-deb: building package 'tandem-mass-dbgsym' in '../tandem-mass-dbgsym_201702011-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../tandem-mass_201702011-1_i386.buildinfo dpkg-genchanges --build=binary -O../tandem-mass_201702011-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/80069 and its subdirectories I: Current time: Thu Jun 26 09:15:07 -12 2025 I: pbuilder-time-stamp: 1750972507