I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 28 23:20:05 +14 2025 I: pbuilder-time-stamp: 1745832005 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 12:45:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/33246/tmp/hooks/D01_modify_environment starting debug: Running on ionos6-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 28 09:20 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/33246/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/33246/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=d7ca2c7c4cce4f079cdbea4dd8486b88 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=33246 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kBpN1lkm/pbuilderrc_N6Or --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kBpN1lkm/b2 --logfile b2/build.log racon_1.5.0-3.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 25 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/33246/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19816 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 38.6 MB of archives. After unpacking 142 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-1+b2 [39.6 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libarchive13 i386 3.7.2-1 [386 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libpsl5 i386 0.21.2-1+b1 [59.7 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libssh2-1 i386 1.11.0-4 [224 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libcurl4 i386 8.5.0-2 [463 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libuv1 i386 1.48.0-1 [156 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.28.3-1 [2128 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 cmake i386 3.28.3-1 [11.7 MB] Get: 36 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.14.1 [85.6 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 debhelper all 13.14.1 [890 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 googletest all 1.14.0-1 [512 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libbiosoup-dev all 0.10.0-4 [7784 B] Get: 51 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3+b1 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libbioparser-dev all 3.0.15-3 [9032 B] Get: 53 http://deb.debian.org/debian trixie/main i386 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libcereal-dev i386 1.3.2+dfsg-5 [221 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libedlib1 i386 1.2.7-5 [17.1 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libedlib-dev i386 1.2.7-5 [21.8 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libgtest-dev i386 1.14.0-1+b1 [263 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libspoa7.0.0 i386 4.1.4-1 [89.7 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libspoa-dev i386 4.1.4-1 [9396 B] Get: 60 http://deb.debian.org/debian trixie/main i386 libthread-pool-dev i386 4.0.0-2 [7296 B] Get: 61 http://deb.debian.org/debian trixie/main i386 rampler i386 2.1.1-1 [22.5 kB] Fetched 38.6 MB in 0s (82.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19816 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_i386.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../04-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.7-1+b2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1+b2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../17-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../19-libarchive13_3.7.2-1_i386.deb ... Unpacking libarchive13:i386 (3.7.2-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5+b3_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../24-libnghttp2-14_1.59.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.59.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../25-libpsl5_0.21.2-1+b1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/33246/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/33246/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' 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-I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:54: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/reproducible-path/racon-1.5.0/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); | ~~^ ~~~ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f 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-fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/i386-linux-gnu/libgtest_main.a /usr/lib/i386-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (0 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (2 ms) [----------] 5 tests from RaconInitializeTest (9 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001060 s [racon::Polisher::initialize] loaded sequences 0.043927 s [racon::Polisher::initialize] loaded overlaps 0.000671 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.066807 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.104648 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.153012 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.187520 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.233394 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.271486 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.368931 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.419052 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.457208 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.493135 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.540629 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.582237 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.617766 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.626738 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.632952 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.649546 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.652668 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.653097 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.668452 s [racon::Polisher::initialize] aligning overlaps [====================] 0.674406 s [racon::Polisher::initialize] transformed data into windows 0.021572 s [racon::Polisher::polish] generating consensus [=> ] 0.475259 s [racon::Polisher::polish] generating consensus [==> ] 0.919916 s [racon::Polisher::polish] generating consensus [===> ] 1.351519 s [racon::Polisher::polish] generating consensus [====> ] 1.720224 s [racon::Polisher::polish] generating consensus [=====> ] 1.964387 s [racon::Polisher::polish] generating consensus [======> ] 2.183691 s [racon::Polisher::polish] generating consensus [=======> ] 2.366472 s [racon::Polisher::polish] generating consensus [========> ] 2.577869 s [racon::Polisher::polish] generating consensus [=========> ] 2.966279 s [racon::Polisher::polish] generating consensus [==========> ] 3.363845 s [racon::Polisher::polish] generating consensus [===========> ] 4.084197 s [racon::Polisher::polish] generating consensus [============> ] 4.992186 s [racon::Polisher::polish] generating consensus [=============> ] 6.288600 s [racon::Polisher::polish] generating consensus [==============> ] 7.664651 s [racon::Polisher::polish] generating consensus [===============> ] 8.512642 s [racon::Polisher::polish] generating consensus [================> ] 9.136188 s [racon::Polisher::polish] generating consensus [=================> ] 9.868617 s [racon::Polisher::polish] generating consensus [==================> ] 10.304615 s [racon::Polisher::polish] generating consensus [===================>] 10.888598 s [racon::Polisher::polish] generating consensus [====================] 13.157770 s [racon::Polisher::] total = 13.941316 s [ OK ] RaconPolishingTest.ConsensusWithQualities (13956 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.001008 s [racon::Polisher::initialize] loaded sequences 0.026677 s [racon::Polisher::initialize] loaded overlaps 0.000673 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.077122 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.109002 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.137112 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.173103 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.209122 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.242028 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.328662 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.370387 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.404997 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.437001 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.476867 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.512923 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.557099 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.573448 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.598382 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.645482 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.665483 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.697467 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.752722 s [racon::Polisher::initialize] aligning overlaps [====================] 0.797215 s [racon::Polisher::initialize] transformed data into windows 0.000905 s [racon::Polisher::polish] generating consensus [=> ] 0.687423 s [racon::Polisher::polish] generating consensus [==> ] 1.494285 s [racon::Polisher::polish] generating consensus [===> ] 2.058173 s [racon::Polisher::polish] generating consensus [====> ] 2.534195 s [racon::Polisher::polish] generating consensus [=====> ] 2.825025 s [racon::Polisher::polish] generating consensus [======> ] 3.157689 s [racon::Polisher::polish] generating consensus [=======> ] 3.479959 s [racon::Polisher::polish] generating consensus [========> ] 3.834643 s [racon::Polisher::polish] generating consensus [=========> ] 4.366649 s [racon::Polisher::polish] generating consensus [==========> ] 5.170161 s [racon::Polisher::polish] generating consensus [===========> ] 6.054162 s [racon::Polisher::polish] generating consensus [============> ] 7.082581 s [racon::Polisher::polish] generating consensus [=============> ] 8.578581 s [racon::Polisher::polish] generating consensus [==============> ] 9.682160 s [racon::Polisher::polish] generating consensus [===============> ] 10.774161 s [racon::Polisher::polish] generating consensus [================> ] 11.806164 s [racon::Polisher::polish] generating consensus [=================> ] 12.786202 s [racon::Polisher::polish] generating consensus [==================> ] 13.394193 s [racon::Polisher::polish] generating consensus [===================>] 14.086168 s [racon::Polisher::polish] generating consensus [====================] 18.446154 s [racon::Polisher::] total = 19.310792 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (19330 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.001102 s [racon::Polisher::initialize] loaded sequences 0.056292 s [racon::Polisher::initialize] loaded overlaps 0.032212 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.010022 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.010633 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.011147 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.011622 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.012078 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.012526 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.012988 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.013433 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.013865 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.014336 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.014863 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.015498 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.016140 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.016679 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.017116 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.017537 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.017977 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.018419 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.018849 s [racon::Polisher::initialize] aligning overlaps [====================] 0.019288 s [racon::Polisher::initialize] transformed data into windows 0.021553 s [racon::Polisher::polish] generating consensus [=> ] 0.678305 s [racon::Polisher::polish] generating consensus [==> ] 1.306302 s [racon::Polisher::polish] generating consensus [===> ] 1.922294 s [racon::Polisher::polish] generating consensus [====> ] 2.366760 s [racon::Polisher::polish] generating consensus [=====> ] 2.550606 s [racon::Polisher::polish] generating consensus [======> ] 2.758650 s [racon::Polisher::polish] generating consensus [=======> ] 3.014647 s [racon::Polisher::polish] generating consensus [========> ] 3.290712 s [racon::Polisher::polish] generating consensus [=========> ] 3.522289 s [racon::Polisher::polish] generating consensus [==========> ] 4.142293 s [racon::Polisher::polish] generating consensus [===========> ] 4.810736 s [racon::Polisher::polish] generating consensus [============> ] 5.718701 s [racon::Polisher::polish] generating consensus [=============> ] 6.846303 s [racon::Polisher::polish] generating consensus [==============> ] 8.074763 s [racon::Polisher::polish] generating consensus [===============> ] 9.124769 s [racon::Polisher::polish] generating consensus [================> ] 9.814850 s [racon::Polisher::polish] generating consensus [=================> ] 10.670694 s [racon::Polisher::polish] generating consensus [==================> ] 11.150307 s [racon::Polisher::polish] generating consensus [===================>] 11.602304 s [racon::Polisher::polish] generating consensus [====================] 13.421028 s [racon::Polisher::] total = 13.594812 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (13615 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.001067 s [racon::Polisher::initialize] loaded sequences 0.026592 s [racon::Polisher::initialize] loaded overlaps 0.030356 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.012524 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.013172 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.013732 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.014177 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.014326 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.014454 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.014933 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.015424 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.015918 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.016420 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.016891 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.017526 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.018085 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.018708 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.019204 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.019650 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.020101 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.020541 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.020997 s [racon::Polisher::initialize] aligning overlaps [====================] 0.021459 s [racon::Polisher::initialize] transformed data into windows 0.000933 s [racon::Polisher::polish] generating consensus [=> ] 0.763397 s [racon::Polisher::polish] generating consensus [==> ] 1.555406 s [racon::Polisher::polish] generating consensus [===> ] 2.179969 s [racon::Polisher::polish] generating consensus [====> ] 2.567530 s [racon::Polisher::polish] generating consensus [=====> ] 2.787395 s [racon::Polisher::polish] generating consensus [======> ] 3.111390 s [racon::Polisher::polish] generating consensus [=======> ] 3.411844 s [racon::Polisher::polish] generating consensus [========> ] 4.014789 s [racon::Polisher::polish] generating consensus [=========> ] 4.383396 s [racon::Polisher::polish] generating consensus [==========> ] 5.139399 s [racon::Polisher::polish] generating consensus [===========> ] 5.903397 s [racon::Polisher::polish] generating consensus [============> ] 6.927410 s [racon::Polisher::polish] generating consensus [=============> ] 8.447413 s [racon::Polisher::polish] generating consensus [==============> ] 9.727408 s [racon::Polisher::polish] generating consensus [===============> ] 10.839395 s [racon::Polisher::polish] generating consensus [================> ] 11.771908 s [racon::Polisher::polish] generating consensus [=================> ] 12.531849 s [racon::Polisher::polish] generating consensus [==================> ] 13.079395 s [racon::Polisher::polish] generating consensus [===================>] 13.707847 s [racon::Polisher::polish] generating consensus [====================] 16.653037 s [racon::Polisher::] total = 16.754567 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (16772 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000629 s [racon::Polisher::initialize] loaded sequences 0.041202 s [racon::Polisher::initialize] loaded overlaps 0.000519 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.055258 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.090504 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.132106 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.176600 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.209761 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.217273 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.294981 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.338381 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.373635 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.404474 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.447667 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.484107 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.528553 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.545232 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.589517 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.623515 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.689880 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.694923 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.725467 s [racon::Polisher::initialize] aligning overlaps [====================] 0.740553 s [racon::Polisher::initialize] transformed data into windows 0.021402 s [racon::Polisher::polish] generating consensus [=> ] 2.270444 s [racon::Polisher::polish] generating consensus [==> ] 2.272944 s [racon::Polisher::polish] generating consensus [===> ] 4.303393 s [racon::Polisher::polish] generating consensus [====> ] 4.303437 s [racon::Polisher::polish] generating consensus [=====> ] 5.299827 s [racon::Polisher::polish] generating consensus [======> ] 5.300382 s [racon::Polisher::polish] generating consensus [=======> ] 6.087383 s [racon::Polisher::polish] generating consensus [========> ] 6.087430 s [racon::Polisher::polish] generating consensus [=========> ] 7.559385 s [racon::Polisher::polish] generating consensus [==========> ] 7.823372 s [racon::Polisher::polish] generating consensus [===========> ] 10.307376 s [racon::Polisher::polish] generating consensus [============> ] 10.906725 s [racon::Polisher::polish] generating consensus [=============> ] 14.623653 s [racon::Polisher::polish] generating consensus [==============> ] 15.118305 s [racon::Polisher::polish] generating consensus [===============> ] 17.371381 s [racon::Polisher::polish] generating consensus [================> ] 17.567418 s [racon::Polisher::polish] generating consensus [=================> ] 19.987858 s [racon::Polisher::polish] generating consensus [==================> ] 19.988465 s [racon::Polisher::polish] generating consensus [===================>] 22.019807 s [racon::Polisher::polish] generating consensus [====================] 26.153230 s [racon::Polisher::] total = 26.986552 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (27049 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000566 s [racon::Polisher::initialize] loaded sequences 0.040362 s [racon::Polisher::initialize] loaded overlaps 0.000339 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.038735 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.059989 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.087509 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.107520 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.133455 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.156161 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.212308 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.240093 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.262407 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.282227 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.309399 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.332741 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.358373 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.370590 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.386684 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.421763 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.435070 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.455048 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.490919 s [racon::Polisher::initialize] aligning overlaps [====================] 0.522480 s [racon::Polisher::initialize] transformed data into windows 0.021612 s [racon::Polisher::polish] generating consensus [=> ] 0.441309 s [racon::Polisher::polish] generating consensus [==> ] 0.852912 s [racon::Polisher::polish] generating consensus [===> ] 1.185648 s [racon::Polisher::polish] generating consensus [====> ] 1.448218 s [racon::Polisher::polish] generating consensus [=====> ] 1.582998 s [racon::Polisher::polish] generating consensus [======> ] 1.746821 s [racon::Polisher::polish] generating consensus [=======> ] 1.893050 s [racon::Polisher::polish] generating consensus [========> ] 2.074662 s [racon::Polisher::polish] generating consensus [=========> ] 2.347789 s [racon::Polisher::polish] generating consensus [==========> ] 2.656391 s [racon::Polisher::polish] generating consensus [===========> ] 3.140528 s [racon::Polisher::polish] generating consensus [============> ] 3.763048 s [racon::Polisher::polish] generating consensus [=============> ] 4.583684 s [racon::Polisher::polish] generating consensus [==============> ] 5.563971 s [racon::Polisher::polish] generating consensus [===============> ] 6.138970 s [racon::Polisher::polish] generating consensus [================> ] 6.556050 s [racon::Polisher::polish] generating consensus [=================> ] 7.061694 s [racon::Polisher::polish] generating consensus [==================> ] 7.490641 s [racon::Polisher::polish] generating consensus [===================>] 8.074710 s [racon::Polisher::polish] generating consensus [====================] 10.116270 s [racon::Polisher::] total = 10.740797 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (10757 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.054473 s [racon::Polisher::initialize] loaded sequences 0.056251 s [racon::Polisher::initialize] loaded overlaps 0.016229 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.124010 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.268072 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.303606 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.339585 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.371580 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.435584 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.459603 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.491583 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.543582 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.615965 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.665237 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.699998 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.751979 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.816063 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.860039 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.916060 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.968034 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.012126 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.032050 s [racon::Polisher::initialize] aligning overlaps [====================] 1.041147 s [racon::Polisher::initialize] transformed data into windows 0.027608 s [racon::Polisher::polish] generating consensus [=> ] 0.410714 s [racon::Polisher::polish] generating consensus [==> ] 0.807382 s [racon::Polisher::polish] generating consensus [===> ] 1.072822 s [racon::Polisher::polish] generating consensus [====> ] 1.073545 s [racon::Polisher::polish] generating consensus [=====> ] 1.308492 s [racon::Polisher::polish] generating consensus [======> ] 1.435959 s [racon::Polisher::polish] generating consensus [=======> ] 1.645863 s [racon::Polisher::polish] generating consensus [========> ] 1.689663 s [racon::Polisher::polish] generating consensus [=========> ] 2.123226 s [racon::Polisher::polish] generating consensus [==========> ] 2.294809 s [racon::Polisher::polish] generating consensus [===========> ] 2.434888 s [racon::Polisher::polish] generating consensus [============> ] 2.485204 s [racon::Polisher::polish] generating consensus [=============> ] 2.656508 s [racon::Polisher::polish] generating consensus [==============> ] 2.657253 s [racon::Polisher::polish] generating consensus [===============> ] 3.046568 s [racon::Polisher::polish] generating consensus [================> ] 3.047227 s [racon::Polisher::polish] generating consensus [=================> ] 3.823748 s [racon::Polisher::polish] generating consensus [==================> ] 4.084864 s [racon::Polisher::polish] generating consensus [===================>] 4.325994 s [racon::Polisher::polish] generating consensus [====================] 4.392232 s [racon::Polisher::] total = 5.589947 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (5605 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.040046 s [racon::Polisher::initialize] loaded sequences 0.040769 s [racon::Polisher::initialize] loaded overlaps 0.008768 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.883135 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.310112 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.695180 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.238226 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.620988 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.981082 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.431332 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.041275 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.663087 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.161556 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.579264 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.199239 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.880460 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.454553 s [racon::Polisher::initialize] aligning overlaps [===============> ] 8.146640 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.790801 s [racon::Polisher::initialize] aligning overlaps [=================> ] 9.330873 s [racon::Polisher::initialize] aligning overlaps [==================> ] 10.021795 s [racon::Polisher::initialize] aligning overlaps [===================>] 10.731955 s [racon::Polisher::initialize] aligning overlaps [====================] 11.077790 s [racon::Polisher::initialize] transformed data into windows 0.655432 s [racon::Polisher::polish] generating consensus [=> ] 16.614301 s [racon::Polisher::polish] generating consensus [==> ] 31.397829 s [racon::Polisher::polish] generating consensus [===> ] 45.329620 s [racon::Polisher::polish] generating consensus [====> ] 55.717550 s [racon::Polisher::polish] generating consensus [=====> ] 66.526992 s [racon::Polisher::polish] generating consensus [======> ] 79.468677 s [racon::Polisher::polish] generating consensus [=======> ] 93.069599 s [racon::Polisher::polish] generating consensus [========> ] 102.694599 s [racon::Polisher::polish] generating consensus [=========> ] 114.844538 s [racon::Polisher::polish] generating consensus [==========> ] 133.342518 s [racon::Polisher::polish] generating consensus [===========> ] 145.871562 s [racon::Polisher::polish] generating consensus [============> ] 159.430929 s [racon::Polisher::polish] generating consensus [=============> ] 171.282951 s [racon::Polisher::polish] generating consensus [==============> ] 183.702361 s [racon::Polisher::polish] generating consensus [===============> ] 197.661052 s [racon::Polisher::polish] generating consensus [================> ] 205.120388 s [racon::Polisher::polish] generating consensus [=================> ] 219.943392 s [racon::Polisher::polish] generating consensus [==================> ] 233.906964 s [racon::Polisher::polish] generating consensus [===================>] 247.259725 s [racon::Polisher::polish] generating consensus [====================] 257.424083 s [racon::Polisher::] total = 269.251768 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (269263 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.025870 s [racon::Polisher::initialize] loaded sequences 0.018601 s [racon::Polisher::initialize] loaded overlaps 0.008825 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.646965 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.067958 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.447485 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.020158 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.514429 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.849876 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.318753 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.930831 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.480396 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.038866 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.459618 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.069782 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.689812 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.236369 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.933481 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.574662 s [racon::Polisher::initialize] aligning overlaps [=================> ] 9.122563 s [racon::Polisher::initialize] aligning overlaps [==================> ] 9.804437 s [racon::Polisher::initialize] aligning overlaps [===================>] 10.519006 s [racon::Polisher::initialize] aligning overlaps [====================] 10.985678 s [racon::Polisher::initialize] transformed data into windows 0.014301 s [racon::Polisher::polish] generating consensus [=> ] 21.875290 s [racon::Polisher::polish] generating consensus [==> ] 38.812654 s [racon::Polisher::polish] generating consensus [===> ] 55.899426 s [racon::Polisher::polish] generating consensus [====> ] 68.716596 s [racon::Polisher::polish] generating consensus [=====> ] 84.069538 s [racon::Polisher::polish] generating consensus [======> ] 104.141782 s [racon::Polisher::polish] generating consensus [=======> ] 123.249593 s [racon::Polisher::polish] generating consensus [========> ] 137.149677 s [racon::Polisher::polish] generating consensus [=========> ] 154.606810 s [racon::Polisher::polish] generating consensus [==========> ] 174.954503 s [racon::Polisher::polish] generating consensus [===========> ] 193.280911 s [racon::Polisher::polish] generating consensus [============> ] 211.851421 s [racon::Polisher::polish] generating consensus [=============> ] 229.087074 s [racon::Polisher::polish] generating consensus [==============> ] 246.662478 s [racon::Polisher::polish] generating consensus [===============> ] 264.275820 s [racon::Polisher::polish] generating consensus [================> ] 274.061735 s [racon::Polisher::polish] generating consensus [=================> ] 296.566085 s [racon::Polisher::polish] generating consensus [==================> ] 317.440681 s [racon::Polisher::polish] generating consensus [===================>] 335.200284 s [racon::Polisher::polish] generating consensus [====================] 351.449943 s [racon::Polisher::] total = 362.505712 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (362526 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.041286 s [racon::Polisher::initialize] loaded sequences 0.040993 s [racon::Polisher::initialize] loaded overlaps 0.008876 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.642570 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.060264 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.447749 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.019742 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.509022 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.843098 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.311076 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.921360 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.470483 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.026513 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.446706 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.059936 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.679635 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.188383 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.896877 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.545321 s [racon::Polisher::initialize] aligning overlaps [=================> ] 9.121335 s [racon::Polisher::initialize] aligning overlaps [==================> ] 9.771398 s [racon::Polisher::initialize] aligning overlaps [===================>] 10.436334 s [racon::Polisher::initialize] aligning overlaps [====================] 10.967872 s [racon::Polisher::initialize] transformed data into windows 0.590362 s [racon::Polisher::polish] generating consensus [=> ] 15.849244 s [racon::Polisher::polish] generating consensus [==> ] 27.149706 s [racon::Polisher::polish] generating consensus [===> ] 39.520699 s [racon::Polisher::polish] generating consensus [====> ] 50.013428 s [racon::Polisher::polish] generating consensus [=====> ] 60.888287 s [racon::Polisher::polish] generating consensus [======> ] 75.516062 s [racon::Polisher::polish] generating consensus [=======> ] 96.909343 s [racon::Polisher::polish] generating consensus [========> ] 108.350137 s [racon::Polisher::polish] generating consensus [=========> ] 121.695886 s [racon::Polisher::polish] generating consensus [==========> ] 141.018196 s [racon::Polisher::polish] generating consensus [===========> ] 158.576084 s [racon::Polisher::polish] generating consensus [============> ] 179.097922 s [racon::Polisher::polish] generating consensus [=============> ] 194.942640 s [racon::Polisher::polish] generating consensus [==============> ] 209.428998 s [racon::Polisher::polish] generating consensus [===============> ] 224.116324 s [racon::Polisher::polish] generating consensus [================> ] 232.496420 s [racon::Polisher::polish] generating consensus [=================> ] 247.632646 s [racon::Polisher::polish] generating consensus [==================> ] 262.648366 s [racon::Polisher::polish] generating consensus [===================>] 276.324354 s [racon::Polisher::polish] generating consensus [====================] 290.691894 s [racon::Polisher::] total = 302.949464 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (302976 ms) [----------] 10 tests from RaconPolishingTest (1041859 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (1041868 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_i386.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_i386.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/33246/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/33246/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/33246 and its subdirectories I: Current time: Mon Apr 28 23:38:58 +14 2025 I: pbuilder-time-stamp: 1745833138