I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 20 02:45:41 +14 2025 I: pbuilder-time-stamp: 1745066741 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-cran-nmf_0.27-1.dsc] I: copying [./r-cran-nmf_0.27.orig.tar.gz] I: copying [./r-cran-nmf_0.27-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Feb 13 20:18:08 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-nmf_0.27-1.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-nmf in r-cran-nmf-0.27 dpkg-source: info: unpacking r-cran-nmf_0.27.orig.tar.gz dpkg-source: info: unpacking r-cran-nmf_0.27-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-detection-of-cores.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30040/tmp/hooks/D01_modify_environment starting debug: Running on ionos6-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 19 12:45 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/30040/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/30040/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=5c12ffd964ae4a49b4bb0f3054d42015 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=30040 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pLwt2oZe/pbuilderrc_0ltz --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pLwt2oZe/b2 --logfile b2/build.log r-cran-nmf_0.27-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 16 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/30040/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-registry, r-cran-rngtools, r-cran-cluster, r-cran-stringr, r-cran-digest, r-cran-gridbase, r-cran-colorspace, r-cran-rcolorbrewer, r-cran-foreach, r-cran-doparallel, r-cran-ggplot2, r-cran-reshape2, r-bioc-biobase, r-cran-codetools, r-cran-biocmanager dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19818 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-registry; however: Package r-cran-registry is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rngtools; however: Package r-cran-rngtools is not installed. pbuilder-satisfydepends-dummy depends on r-cran-cluster; however: Package r-cran-cluster is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stringr; however: Package r-cran-stringr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-digest; however: Package r-cran-digest is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gridbase; however: Package r-cran-gridbase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-colorspace; however: Package r-cran-colorspace is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-codetools; however: Package r-cran-codetools is not installed. pbuilder-satisfydepends-dummy depends on r-cran-biocmanager; however: Package r-cran-biocmanager is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} m4{a} man-db{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-cran-biocmanager{a} r-cran-cli{a} r-cran-cluster{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-digest{a} r-cran-doparallel{a} r-cran-fansi{a} r-cran-farver{a} r-cran-foreach{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridbase{a} r-cran-gtable{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-registry{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rngtools{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-biocversion r-cran-abind r-cran-bit64 r-cran-callr r-cran-caret r-cran-covr r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-dplyr r-cran-formattable r-cran-fs r-cran-generics r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-itertools r-cran-knitr r-cran-lintr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-mlbench r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-ps r-cran-quantreg r-cran-ragg r-cran-remotes r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-sf r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 223 newly installed, 0 to remove and 0 not upgraded. Need to get 140 MB of archives. After unpacking 376 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-1 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-3 [69.1 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 openssl i386 3.1.5-1 [1246 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-1+b2 [39.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.14.1 [85.6 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 29 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 debhelper all 13.14.1 [890 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 zip i386 3.0-13 [236 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 unzip i386 6.0-28 [166 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 41 http://deb.debian.org/debian trixie/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libpng16-16 i386 1.6.43-1 [285 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.2+dfsg-1+b1 [449 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libpixman-1-0 i386 0.42.2-1+b1 [555 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.1-1 [132 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1 [822 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libcairo2 i386 1.18.0-1+b1 [587 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libpsl5 i386 0.21.2-1+b1 [59.7 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libssh2-1 i386 1.11.0-4 [224 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libcurl4 i386 8.5.0-2 [463 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libglib2.0-0 i386 2.78.4-1 [1520 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-2+b2 [169 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240201-3 [733 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 fontconfig i386 2.15.0-1.1 [462 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 8.3.0-2 [2234 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libthai-data all 0.1.29-2 [168 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libdatrie1 i386 0.2.13-3 [39.5 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libthai0 i386 0.1.29-2 [50.1 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libpango-1.0-0 i386 1.52.0+ds-1 [224 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libpangoft2-1.0-0 i386 1.52.0+ds-1 [51.0 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libpangocairo-1.0-0 i386 1.52.0+ds-1 [35.9 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libreadline8 i386 8.2-3+b1 [171 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libtcl8.6 i386 8.6.14+dfsg-1 [1095 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.19-1 [41.9 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.3.2-0.4 [107 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.3.2-0.4 [314 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libxft2 i386 2.3.6-1+b1 [55.3 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23 [252 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libtk8.6 i386 8.6.14-1 [826 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 r-base-core i386 4.3.2-1 [26.9 MB] Get: 101 http://deb.debian.org/debian trixie/main i386 libgfortran-13-dev i386 13.2.0-13 [783 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 gfortran-13-i686-linux-gnu i386 13.2.0-13 [11.1 MB] Get: 103 http://deb.debian.org/debian trixie/main i386 gfortran-13 i386 13.2.0-13 [10.5 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 gfortran-i686-linux-gnu i386 4:13.2.0-7 [1280 B] Get: 105 http://deb.debian.org/debian trixie/main i386 gfortran i386 4:13.2.0-7 [1432 B] Get: 106 http://deb.debian.org/debian trixie/main i386 libblas-dev i386 3.12.0-3 [152 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 liblapack-dev i386 3.12.0-3 [4400 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libncurses6 i386 6.4+20240113-1 [111 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libncurses-dev i386 6.4+20240113-1 [380 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libreadline-dev i386 8.2-3+b1 [164 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2+b2 [303 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libjpeg-dev i386 1:2.1.5-2+b2 [72.1 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libpcre2-16-0 i386 10.42-4+b1 [244 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 libpcre2-32-0 i386 10.42-4+b1 [233 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libpcre2-posix3 i386 10.42-4+b1 [55.8 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libpcre2-dev i386 10.42-4+b1 [759 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3+b1 [915 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libpng-dev i386 1.6.43-1 [369 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libbz2-dev i386 1.0.8-5+b2 [31.4 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.0-0.2 [281 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 icu-devtools i386 72.1-4+b1 [216 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libicu-dev i386 72.1-4+b1 [10.6 MB] Get: 123 http://deb.debian.org/debian trixie/main i386 libxmuu1 i386 2:1.1.3-3 [24.1 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 xauth i386 1:1.1.2-1 [36.7 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-1+b2 [38.5 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-1+b2 [30.2 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-1+b2 [26.2 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 pkg-config i386 1.8.1-1+b2 [14.0 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 r-base-dev all 4.3.2-1 [4504 B] Get: 130 http://deb.debian.org/debian trixie/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 libswitch-perl all 2.17-3 [20.3 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 libclone-perl i386 0.46-1+b1 [13.9 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 liburi-perl all 5.27-1 [98.4 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 libparams-util-perl i386 1.102-2+b2 [24.7 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 libsub-install-perl all 0.929-1 [10.5 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 143 http://deb.debian.org/debian trixie/main i386 libb-hooks-op-check-perl i386 0.22-2+b2 [10.7 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 libdevel-callchecker-perl i386 0.008-2+b1 [15.1 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 libparams-classify-perl i386 0.015-2+b2 [23.1 kB] Get: 147 http://deb.debian.org/debian trixie/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 150 http://deb.debian.org/debian trixie/main i386 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 libclass-load-perl all 0.25-2 [15.3 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 libclass-load-xs-perl i386 0.10-2+b2 [14.3 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 154 http://deb.debian.org/debian trixie/main i386 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 155 http://deb.debian.org/debian trixie/main i386 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 157 http://deb.debian.org/debian trixie/main i386 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 159 http://deb.debian.org/debian trixie/main i386 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 162 http://deb.debian.org/debian trixie/main i386 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 164 http://deb.debian.org/debian trixie/main i386 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 libpackage-stash-xs-perl i386 0.30-1+b2 [20.5 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 libmoose-perl i386 2.2207-1 [766 kB] Get: 167 http://deb.debian.org/debian trixie/main i386 libvariable-magic-perl i386 0.63-1+b2 [44.5 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 libsub-identify-perl i386 0.14-3+b1 [11.2 kB] Get: 170 http://deb.debian.org/debian trixie/main i386 libsub-name-perl i386 0.27-1+b1 [12.6 kB] Get: 171 http://deb.debian.org/debian trixie/main i386 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 172 http://deb.debian.org/debian trixie/main i386 libcurl3-gnutls i386 8.5.0-2 [454 kB] Get: 173 http://deb.debian.org/debian trixie/main i386 libwww-curl-perl i386 4.17-10+b1 [61.4 kB] Get: 174 http://deb.debian.org/debian trixie/main i386 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 175 http://deb.debian.org/debian trixie/main i386 dh-r all 20231212 [42.2 kB] Get: 176 http://deb.debian.org/debian trixie/main i386 r-cran-littler i386 0.3.19-1 [89.8 kB] Get: 177 http://deb.debian.org/debian trixie/main i386 littler all 0.3.19-1 [15.4 kB] Get: 178 http://deb.debian.org/debian trixie/main i386 r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get: 179 http://deb.debian.org/debian trixie/main i386 r-bioc-biobase i386 2.62.0-1 [2120 kB] Get: 180 http://deb.debian.org/debian trixie/main i386 r-cran-biocmanager all 1.30.22+dfsg-2 [126 kB] Get: 181 http://deb.debian.org/debian trixie/main i386 r-cran-cli i386 3.6.2-1 [1325 kB] Get: 182 http://deb.debian.org/debian trixie/main i386 r-cran-cluster i386 2.1.6-1 [572 kB] Get: 183 http://deb.debian.org/debian trixie/main i386 r-cran-codetools all 0.2-19-1 [90.9 kB] Get: 184 http://deb.debian.org/debian trixie/main i386 r-cran-colorspace i386 2.1-0+dfsg-1 [1695 kB] Get: 185 http://deb.debian.org/debian trixie/main i386 r-cran-digest i386 0.6.34-1 [188 kB] Get: 186 http://deb.debian.org/debian trixie/main i386 r-cran-iterators all 1.0.14-1 [337 kB] Get: 187 http://deb.debian.org/debian trixie/main i386 r-cran-foreach all 1.5.2-1 [122 kB] Get: 188 http://deb.debian.org/debian trixie/main i386 r-cran-doparallel all 1.0.17-1 [188 kB] Get: 189 http://deb.debian.org/debian trixie/main i386 r-cran-fansi i386 1.0.5-1 [625 kB] Get: 190 http://deb.debian.org/debian trixie/main i386 r-cran-farver i386 2.1.1-1 [1404 kB] Get: 191 http://deb.debian.org/debian trixie/main i386 r-cran-glue i386 1.7.0-1 [157 kB] Get: 192 http://deb.debian.org/debian trixie/main i386 r-cran-rlang i386 1.1.3-1 [1683 kB] Get: 193 http://deb.debian.org/debian trixie/main i386 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 194 http://deb.debian.org/debian trixie/main i386 r-cran-gtable all 0.3.4+dfsg-1 [221 kB] Get: 195 http://deb.debian.org/debian trixie/main i386 r-cran-isoband i386 0.2.7-1 [1617 kB] Get: 196 http://deb.debian.org/debian trixie/main i386 r-cran-mass i386 7.3-60.0.1-1 [1119 kB] Get: 197 http://deb.debian.org/debian trixie/main i386 r-cran-lattice i386 0.22-5-1 [1395 kB] Get: 198 http://deb.debian.org/debian trixie/main i386 r-cran-nlme i386 3.1.164-1 [2283 kB] Get: 199 http://deb.debian.org/debian trixie/main i386 r-cran-matrix i386 1.6-5-1 [3847 kB] Get: 200 http://deb.debian.org/debian trixie/main i386 r-cran-mgcv i386 1.9-1-1 [3256 kB] Get: 201 http://deb.debian.org/debian trixie/main i386 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 202 http://deb.debian.org/debian trixie/main i386 r-cran-munsell all 0.5.0-2 [236 kB] Get: 203 http://deb.debian.org/debian trixie/main i386 r-cran-r6 all 2.5.1-1 [105 kB] Get: 204 http://deb.debian.org/debian trixie/main i386 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 205 http://deb.debian.org/debian trixie/main i386 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 206 http://deb.debian.org/debian trixie/main i386 r-cran-scales all 1.3.0-1 [677 kB] Get: 207 http://deb.debian.org/debian trixie/main i386 r-cran-magrittr i386 2.0.3-1 [201 kB] Get: 208 http://deb.debian.org/debian trixie/main i386 r-cran-utf8 i386 1.2.4-1 [135 kB] Get: 209 http://deb.debian.org/debian trixie/main i386 r-cran-vctrs i386 0.6.5-1 [1393 kB] Get: 210 http://deb.debian.org/debian trixie/main i386 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 211 http://deb.debian.org/debian trixie/main i386 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 212 http://deb.debian.org/debian trixie/main i386 r-cran-tibble i386 3.2.1+dfsg-2 [421 kB] Get: 213 http://deb.debian.org/debian trixie/main i386 r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get: 214 http://deb.debian.org/debian trixie/main i386 r-cran-ggplot2 all 3.4.4+dfsg-1 [3405 kB] Get: 215 http://deb.debian.org/debian trixie/main i386 r-cran-gridbase all 0.4-7-5 [163 kB] Get: 216 http://deb.debian.org/debian trixie/main i386 r-cran-pkgkitten all 0.2.3-1 [26.7 kB] Get: 217 http://deb.debian.org/debian trixie/main i386 r-cran-rcpp i386 1.0.12-1 [2084 kB] Get: 218 http://deb.debian.org/debian trixie/main i386 r-cran-plyr i386 1.8.9-1 [832 kB] Get: 219 http://deb.debian.org/debian trixie/main i386 r-cran-registry all 0.5-1-2 [202 kB] Get: 220 http://deb.debian.org/debian trixie/main i386 r-cran-stringi i386 1.8.3-1 [873 kB] Get: 221 http://deb.debian.org/debian trixie/main i386 r-cran-stringr all 1.5.1-1 [296 kB] Get: 222 http://deb.debian.org/debian trixie/main i386 r-cran-reshape2 i386 1.4.4-2 [115 kB] Get: 223 http://deb.debian.org/debian trixie/main i386 r-cran-rngtools all 1.5.2-1 [83.4 kB] Fetched 140 MB in 2s (93.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19818 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-1_all.deb ... Unpacking tzdata (2024a-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.1.5-1_i386.deb ... Unpacking openssl (3.1.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../006-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... 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Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:i386 (0.015-2+b2) ... Setting up libpango-1.0-0:i386 (1.52.0+ds-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:i386 (8.5.0-2) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:i386 (1.18.0-1+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:i386 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... 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Setting up dh-r (20231212) ... Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/30040/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/30040/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-cran-nmf-0.27/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-cran-nmf_0.27-1_source.changes dpkg-buildpackage: info: source package r-cran-nmf dpkg-buildpackage: info: source version 0.27-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-nmf/ -O--buildsystem=R I: R Package: NMF Version: 0.27 I: Building using R version 4.3.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 13 Feb 2024 21:16:06 +0100 mkdir -p /build/reproducible-path/r-cran-nmf-0.27/debian/r-cran-nmf/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-cran-nmf-0.27/debian/r-cran-nmf/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 13 Feb 2024 21:16:06 +0100'" * installing *source* package 'NMF' ... files 'R/options.R', 'R/parallel.R' have the wrong MD5 checksums ** using staged installation ** libs using C compiler: 'gcc (Debian 13.2.0-13) 13.2.0' using C++ compiler: 'g++ (Debian 13.2.0-13) 13.2.0' make[1]: Entering directory '/build/reproducible-path/r-cran-nmf-0.27/src' g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c distance.cpp -o distance.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c divergence.cpp -o divergence.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c euclidean.cpp -o euclidean.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.cpp -o utils.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o NMF.so distance.o divergence.o euclidean.o registerDynamicSymbol.o utils.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-cran-nmf-0.27/src' make[1]: Entering directory '/build/reproducible-path/r-cran-nmf-0.27/src' make[1]: Leaving directory '/build/reproducible-path/r-cran-nmf-0.27/src' installing to /build/reproducible-path/r-cran-nmf-0.27/debian/r-cran-nmf/usr/lib/R/site-library/00LOCK-r-cran-nmf-0.27/00new/NMF/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Setting package specific options: package:NMF:logger (1 default option(s)) Setting package specific options: package:NMF (10 default option(s)) Creating a generic function for 'plot' from 'graphics' in package 'NMF' (from the saved implicit definition) Creating meta registry in package 'NMF' ... OK Creating registry 'extra_handler' in package 'NMF' ... OK Creating registry 'extra_action' in package 'NMF' ... OK Registering extra handler 'install.packages' [function] ... OK Creating registry 'algorithm' in package 'NMF' ... OK Registering NMF algorithm '.R#brunet' [NMFStrategyIterative] ... OK Registering NMF algorithm 'brunet' [NMFStrategyIterative] based on template '.R#brunet' ... OK Registering NMF algorithm 'KL' [NMFStrategyIterative] ... OK Registering NMF algorithm '.R#lee' [NMFStrategyIterative] ... OK Registering NMF algorithm 'lee' [NMFStrategyIterative] based on template '.R#lee' ... OK Registering NMF algorithm 'Frobenius' [NMFStrategyIterative] ... OK Registering NMF algorithm '.R#offset' [NMFStrategyIterative] ... OK Registering NMF algorithm 'offset' [NMFStrategyIterative] based on template '.R#offset' ... OK Registering NMF algorithm '.R#nsNMF' [NMFStrategyIterative] ... OK Registering NMF algorithm 'nsNMF' [NMFStrategyIterative] based on template '.R#nsNMF' ... OK Registering NMF algorithm 'ls-nmf' [NMFStrategyIterative] ... OK Registering NMF algorithm 'pe-nmf' [NMFStrategyIterative] ... OK Registering NMF algorithm '.siNMF' [NMFStrategyIterative] based on template 'lee' ... OK Registering NMF algorithm 'siNMF' [NMFStrategyIterative] based on template 'lee' ... OK Registering NMF algorithm 'snmf/r' [NMFStrategyFunction] ... OK Registering NMF algorithm 'snmf/l' [NMFStrategyFunction] ... OK Registering extra action 'bigmemory' for handler 'install.packages' ... OK Registering extra action 'synchronicity' for handler 'install.packages' ... OK Creating registry 'seed' in package 'NMF' ... OK Registering NMF seeding method 'none' [NMFSeed] ... OK Registering NMF seeding method 'random' [NMFSeed] ... OK Registering NMF seeding method 'ica' [NMFSeed] ... OK Registering NMF seeding method 'nndsvd' [NMFSeed] ... OK ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NMF) W: Ignoring specified R dependency: R (>= 3.0.0) I: Using r-cran-registry for Depends:registry I: Using r-cran-rngtools for Depends:rngtools (>= 1.2.3) I: Using r-cran-cluster for Depends:cluster I: Using r-cran-fastica for Suggests:fastICA W: Cannot find a debian package for Suggests:doMPI I: Using r-cran-bigmemory for Suggests:bigmemory (>= 4.2) W: Cannot find a debian package for Suggests:synchronicity (>= 1.3.2) I: Using r-cran-corpcor for Suggests:corpcor I: Using r-cran-xtable for Suggests:xtable I: Using r-cran-devtools for Suggests:devtools I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-runit for Suggests:RUnit I: Using r-cran-stringr for Imports:stringr (>= 1.0.0) I: Using r-cran-digest for Imports:digest I: Using r-cran-gridbase for Imports:gridBase I: Using r-cran-colorspace for Imports:colorspace I: Using r-cran-rcolorbrewer by changing version to for Imports:RColorBrewer I: Using r-cran-foreach for Imports:foreach I: Using r-cran-doparallel for Imports:doParallel I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-cran-reshape2 for Imports:reshape2 I: Using r-bioc-biobase for Imports:Biobase I: Using r-cran-codetools for Imports:codetools I: Using r-cran-biocmanager for Imports:BiocManager I: Use r-cran-nmf as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-nmf' in '../r-cran-nmf_0.27-1_i386.deb'. dpkg-deb: building package 'r-cran-nmf-dbgsym' in '../r-cran-nmf-dbgsym_0.27-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-nmf_0.27-1_i386.buildinfo dpkg-genchanges --build=binary -O../r-cran-nmf_0.27-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/30040/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/30040/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30040 and its subdirectories I: Current time: Sun Apr 20 02:46:41 +14 2025 I: pbuilder-time-stamp: 1745066801