I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 22 03:08:11 +14 2025 I: pbuilder-time-stamp: 1766322491 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-weblogo_3.8.0-2.dsc] I: copying [./python-weblogo_3.8.0.orig.tar.gz] I: copying [./python-weblogo_3.8.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 16 00:54:21 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-weblogo_3.8.0-2.dsc: no acceptable signature found dpkg-source: info: extracting python-weblogo in python-weblogo-3.8.0 dpkg-source: info: unpacking python-weblogo_3.8.0.orig.tar.gz dpkg-source: info: unpacking python-weblogo_3.8.0-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/51180/tmp/hooks/D01_modify_environment starting debug: Running on ionos6-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 21 13:08 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/51180/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/51180/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=9a07f5b09327438aa777485bd9037c59 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=51180 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AlSCjCfR/pbuilderrc_xYBZ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AlSCjCfR/b2 --logfile b2/build.log python-weblogo_3.8.0-2.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/51180/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, ghostscript, help2man, python3-all-dev, python3-legacy-cgi, python3-numpy, python3-pytest, python3-scipy, python3-setuptools, python3-setuptools-scm dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-legacy-cgi; however: Package python3-legacy-cgi is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgfortran5{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpaper1{a} libpipeline1{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libsharpyuv0{a} libsm6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxt6t64{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} poppler-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-decorator{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-legacy-cgi{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus fonts-droid-fallback javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil python3-pygments wget 0 packages upgraded, 132 newly installed, 0 to remove and 0 not upgraded. Need to get 86.0 MB of archives. After unpacking 343 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 poppler-data all 0.4.12-1 [1601 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-3 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 14 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 24 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20241024 [109 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libfontenc1 i386 1:1.1.8-1+b1 [23.4 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.44-2 [288 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23.1 [216 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 xfonts-utils i386 1:7.7+7 [95.1 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 74 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1+b1 [318 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libgs-common all 10.04.0~dfsg-1 [148 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libgs10-common all 10.04.0~dfsg-1 [474 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libavahi-common-data i386 0.8-13+b3 [112 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libavahi-common3 i386 0.8-13+b3 [45.2 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libdbus-1-3 i386 1.14.10-6 [217 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libavahi-client3 i386 0.8-13+b3 [49.6 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libcups2t64 i386 2.4.10-2 [267 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1+b1 [402 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libidn12 i386 1.42-2+b1 [82.2 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libijs-0.35 i386 0.35-15.1+b2 [15.7 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libjbig2dec0 i386 0.20-1+b3 [67.0 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.0-2+b4 [210 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libpaper1 i386 1.1.29+b2 [13.0 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.4.0-0.1+b1 [113 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.4.0-0.1+b1 [322 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3+b2 [24.9 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libice6 i386 2:1.1.1-1 [67.8 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libsm6 i386 2:1.2.4-1 [35.9 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libxt6t64 i386 1:1.2.1-1.2+b1 [193 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libgs10 i386 10.04.0~dfsg-1 [2708 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 ghostscript i386 10.04.0~dfsg-1 [50.3 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3+b1 [143 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.4-1 [165 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-8 [735 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3+b1 [2196 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b2 [29.5 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libpython3.12t64 i386 3.12.7-3 [2170 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.7-3 [5282 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.12.6-1 [9956 B] Get: 119 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.12.6-1 [1068 B] Get: 120 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.12.6-1 [1040 B] Get: 121 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.7-3 [505 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.12.6-1 [26.1 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.12.6-1 [1068 B] Get: 124 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 126 http://deb.debian.org/debian trixie/main i386 python3-legacy-cgi all 2.6.1-2 [16.1 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-12 [4752 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.1-1 [45.8 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.3-1 [249 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.13.1-5 [16.6 MB] Get: 132 http://deb.debian.org/debian trixie/main i386 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Fetched 86.0 MB in 2s (36.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.12-minimal:i386. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/51180/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/51180/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-weblogo-3.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-weblogo_3.8.0-2_source.changes dpkg-buildpackage: info: source package python-weblogo dpkg-buildpackage: info: source version 3.8.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running clean removing '/build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-weblogo-3.8.0' rm -rf weblogo.egg-info make[1]: Leaving directory '/build/reproducible-path/python-weblogo-3.8.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running build running build_py creating /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/_cgi.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/logomath.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/data.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/_cli.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/logo.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/matrix.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/_transformseq.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/colorscheme.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/color.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/logo_formatter.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/__init__.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/seq.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo copying weblogo/transform.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo creating /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/nexus_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/intelligenetics_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/table_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/plain_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/msf_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/clustal_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/phylip_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/array_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/stockholm_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/null_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/genbank_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/nbrf_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/__init__.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io copying weblogo/seq_io/fasta_io.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io creating /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus copying weblogo/seq_io/_nexus/__init__.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus copying weblogo/seq_io/_nexus/Trees.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus copying weblogo/seq_io/_nexus/Nodes.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus creating /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/utils copying weblogo/utils/__init__.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/utils copying weblogo/utils/deoptparse.py -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/utils creating /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs copying weblogo/htdocs/logo.css -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs copying weblogo/htdocs/create_html_template.html -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs copying weblogo/htdocs/create.cgi -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs copying weblogo/htdocs/test.html -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs copying weblogo/htdocs/favicon.ico -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs copying weblogo/htdocs/index.html -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs copying weblogo/htdocs/manual.html -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs copying weblogo/htdocs/examples.html -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs copying weblogo/htdocs/weblogo_changelog.txt -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs creating /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/img copying weblogo/htdocs/img/example.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/img copying weblogo/htdocs/img/feed-icon-16x16.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/img copying weblogo/htdocs/img/weblogo-fig1.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/img copying weblogo/htdocs/img/weblogo_create.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/img creating /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/exon-intron.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/globins.fa -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/exon-intron.fa -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/lexA.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/globins.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/intron-exon.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/cap_dna.fa -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/prenyl.fa -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/cap_dna.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/cap_hth.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/hth.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/hth.fa -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/build_examples.sh -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/intron-exon.fa -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/lexA.fa -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/cap_hth.fa -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/ecoli10.png -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/htdocs/examples/ecoli10.fa -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples copying weblogo/template.eps -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo creating /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/blosum40.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/blosum62.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/blosum100.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/blosum80.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/blosum45.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/blosum50.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/pam250.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/dist20_comp.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/pam120.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/dbxref.txt -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data copying weblogo/data/blosum35.mat -> /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build; python3.12 -m pytest -k 'not test_transformseq and not test_cli and not test_resources' ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-weblogo-3.8.0 plugins: typeguard-4.4.1 collected 245 items / 21 deselected / 224 selected tests/test_array_io.py .... [ 1%] tests/test_clustal_io.py ............. [ 7%] tests/test_data.py . [ 8%] tests/test_fasta_io.py ............. [ 13%] tests/test_genbank_io.py .. [ 14%] tests/test_intelligenetics_io.py ..... [ 16%] tests/test_matrix.py ....... [ 20%] tests/test_msf_io.py ........ [ 23%] tests/test_nbrf_io.py ......... [ 27%] tests/test_nexus.py ..... [ 29%] tests/test_nexus_io.py ....... [ 33%] tests/test_null_io.py ... [ 34%] tests/test_phylip_io.py ........... [ 39%] tests/test_plain_io.py ... [ 40%] tests/test_seq.py .............................................. [ 61%] tests/test_seq_io.py ............ [ 66%] tests/test_stockholm_io.py ......... [ 70%] tests/test_table_io.py ... [ 71%] tests/test_transform.py ........ [ 75%] tests/test_utils.py ........... [ 80%] tests/test_weblogo.py ............................................ [100%] =============================== warnings summary =============================== weblogo/__init__.py:1 /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import DistributionNotFound, get_distribution -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 224 passed, 21 deselected, 1 warning in 12.45s ================ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-weblogo/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12 creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/_cgi.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/logomath.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/_cli.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/logo.css -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/create_html_template.html -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/create.cgi -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/test.html -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/favicon.ico -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/img copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/img/example.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/img copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/img/feed-icon-16x16.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/img copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/img/weblogo-fig1.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/img copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/img/weblogo_create.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/img copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/index.html -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/manual.html -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/exon-intron.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/globins.fa -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/exon-intron.fa -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/lexA.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/globins.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/intron-exon.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/cap_dna.fa -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/prenyl.fa -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/cap_dna.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/cap_hth.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/hth.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/hth.fa -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/build_examples.sh -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/intron-exon.fa -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/lexA.fa -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/cap_hth.fa -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/ecoli10.png -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples/ecoli10.fa -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs/examples copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/examples.html -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/htdocs/weblogo_changelog.txt -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/htdocs copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/logo.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/blosum40.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/blosum62.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/blosum100.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/blosum80.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/blosum45.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/blosum50.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/pam250.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/dist20_comp.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/pam120.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/dbxref.txt -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/data/blosum35.mat -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/matrix.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/data.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/transform.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/logo.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/_transformseq.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/colorscheme.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/seq.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/logomath.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/matrix.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/color.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__pycache__/logo_formatter.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/template.eps -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/_transformseq.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/nexus_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/intelligenetics_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/table_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/plain_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/fasta_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/msf_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/phylip_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/array_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/table_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/null_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/genbank_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/clustal_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/stockholm_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/nexus_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/intelligenetics_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/nbrf_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__pycache__/plain_io.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__pycache__ creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus/__pycache__/Trees.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus/__pycache__/Nodes.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus/__init__.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus/Trees.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/_nexus/Nodes.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/msf_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/clustal_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/phylip_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/array_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/stockholm_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/null_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/genbank_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/nbrf_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/__init__.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq_io/fasta_io.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/colorscheme.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/color.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/logo_formatter.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/__init__.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/seq.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/transform.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/utils creating /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/utils/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/utils/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/utils/__pycache__/deoptparse.cpython-312.pyc -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/utils/__pycache__ copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/utils/__init__.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/utils copying /build/reproducible-path/python-weblogo-3.8.0/.pybuild/cpython3_3.12_weblogo/build/weblogo/utils/deoptparse.py -> /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/utils byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/_cgi.py to _cgi.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/logomath.py to logomath.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/data.py to data.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/_cli.py to _cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/logo.py to logo.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/matrix.py to matrix.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/_transformseq.py to _transformseq.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/nexus_io.py to nexus_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/intelligenetics_io.py to intelligenetics_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/table_io.py to table_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/plain_io.py to plain_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus/Trees.py to Trees.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/_nexus/Nodes.py to Nodes.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/msf_io.py to msf_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/clustal_io.py to clustal_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/phylip_io.py to phylip_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/array_io.py to array_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/stockholm_io.py to stockholm_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/null_io.py to null_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/genbank_io.py to genbank_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/nbrf_io.py to nbrf_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq_io/fasta_io.py to fasta_io.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/colorscheme.py to colorscheme.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/color.py to color.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/logo_formatter.py to logo_formatter.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/seq.py to seq.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/transform.py to transform.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo/utils/deoptparse.py to deoptparse.cpython-312.pyc running install_egg_info running egg_info creating weblogo.egg-info writing weblogo.egg-info/PKG-INFO writing dependency_links to weblogo.egg-info/dependency_links.txt writing entry points to weblogo.egg-info/entry_points.txt writing requirements to weblogo.egg-info/requires.txt writing top-level names to weblogo.egg-info/top_level.txt writing manifest file 'weblogo.egg-info/SOURCES.txt' reading manifest file 'weblogo.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'weblogo.egg-info/SOURCES.txt' Copying weblogo.egg-info to /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/lib/python3.12/dist-packages/weblogo-3.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing transformseq script to /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/bin Installing weblogo script to /build/reproducible-path/python-weblogo-3.8.0/debian/python3-weblogo/usr/bin debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-weblogo-3.8.0' find debian/python3-weblogo/usr/lib -name '*.mat' | xargs chmod -x rm -rf debian/python3-weblogo/usr/lib/python*/dist-packages/weblogo/htdocs make[1]: Leaving directory '/build/reproducible-path/python-weblogo-3.8.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/python-weblogo-3.8.0' PYTHONPATH=. help2man debian/python3-weblogo/usr/bin/weblogo --no-info --name 'create sequence logos from biological sequence alignments' > weblogo.1 PYTHONPATH=. help2man debian/python3-weblogo/usr/bin/transformseq --no-info --name 'convert multiple sequence alignments from one format to another' > transformseq.1 make[1]: Leaving directory '/build/reproducible-path/python-weblogo-3.8.0' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-weblogo' in '../python3-weblogo_3.8.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-weblogo_3.8.0-2_i386.buildinfo dpkg-genchanges --build=binary -O../python-weblogo_3.8.0-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/51180/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/51180/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/51180 and its subdirectories I: Current time: Mon Dec 22 03:09:38 +14 2025 I: pbuilder-time-stamp: 1766322578