I: pbuilder: network access will be disabled during build I: Current time: Tue May 20 02:50:39 +14 2025 I: pbuilder-time-stamp: 1747659039 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-gffutils_0.13-1.dsc] I: copying [./python-gffutils_0.13.orig.tar.gz] I: copying [./python-gffutils_0.13-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Apr 13 20:25:45 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-gffutils_0.13-1.dsc: no acceptable signature found dpkg-source: info: extracting python-gffutils in python-gffutils-0.13 dpkg-source: info: unpacking python-gffutils_0.13.orig.tar.gz dpkg-source: info: unpacking python-gffutils_0.13-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3 dpkg-source: info: applying fix-version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23556/tmp/hooks/D01_modify_environment starting debug: Running on ionos6-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 19 12:50 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/23556/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/23556/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=abd4e493696a4c57b4f901653f95db48 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=23556 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4sGf80J4/pbuilderrc_Bk97 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4sGf80J4/b2 --logfile b2/build.log python-gffutils_0.13-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 17 17:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/23556/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, bedtools, python3-all, python3-setuptools, python3-simplejson, python3-argcomplete, python3-argh, python3-pyfaidx, python3-pytest, python3-biopython, python3-pybedtools, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on python3-argcomplete; however: Package python3-argcomplete is not installed. pbuilder-satisfydepends-dummy depends on python3-argh; however: Package python3-argh is not installed. pbuilder-satisfydepends-dummy depends on python3-pyfaidx; however: Package python3-pyfaidx is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pybedtools; however: Package python3-pybedtools is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-argcomplete{a} python3-argh{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-distutils{a} python3-freetype{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pybedtools{a} python3-pyfaidx{a} python3-pysam{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-simplejson{a} python3-six{a} python3-zipp{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 86.9 MB of archives. After unpacking 301 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-6+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.8-1 [817 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.8-1 [2087 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.6-1 [26.2 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-1 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-3 [69.1 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8 i386 8.2-3+b1 [171 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.8-1 [1821 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.8-1 [597 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.6-1 [9224 B] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.6-1 [26.2 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.2-1 [807 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.2-1 [2244 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 sgml-base all 1.31 [15.4 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 bedtools i386 2.31.1+dfsg-2 [745 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 41 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.11.5-1 [131 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240401 [107 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libfontenc1 i386 1:1.1.8-1 [23.1 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libpng16-16 i386 1.6.43-1 [285 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.2+dfsg-1+b1 [449 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23 [252 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 xfonts-utils i386 1:7.7+6 [95.2 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 64 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libpixman-1-0 i386 0.42.2-1+b1 [555 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1 [822 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libcairo2 i386 1.18.0-1+b1 [587 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libpsl5 i386 0.21.2-1+b1 [59.7 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libssh2-1 i386 1.11.0-4 [224 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libcurl3-gnutls i386 8.5.0-2 [454 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240201-3 [733 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libglib2.0-0 i386 2.78.4-1 [1520 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 8.3.0-2 [2234 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.0-1+b1 [68.5 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libhts3 i386 1.19+ds-1 [490 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libimagequant0 i386 2.18.0-1 [35.6 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-2+b2 [169 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.14-2+b1 [165 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.0-2+b2 [197 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.2-1 [1927 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libraqm0 i386 0.10.1-1+b1 [14.7 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.3.2-0.4 [107 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.3.2-0.4 [314 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libwebpdemux2 i386 1.3.2-0.4 [108 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libwebpmux3 i386 1.3.2-0.4 [121 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.2-1 [653 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.11.6-1 [1060 B] Get: 112 http://deb.debian.org/debian trixie/main i386 python3-argcomplete all 3.1.4-1 [37.6 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 python3-argh all 0.31.2-1 [26.5 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.24.2-2 [4879 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 python3-pil i386 10.2.0-1 [526 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 python3-cairo i386 1.26.0-1 [142 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 python3-freetype all 2.4.0-1 [80.3 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 120 http://deb.debian.org/debian trixie/main i386 python3-reportlab all 4.1.0-4 [1113 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 xml-core all 0.19 [20.1 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 python3-biopython i386 1.81+dfsg-3 [1616 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.2.0-1 [59.9 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 python3-zipp all 1.0.0-6 [6696 B] Get: 126 http://deb.debian.org/debian trixie/main i386 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 128 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.0-1 [45.5 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.4.0-1 [26.2 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 python3-pysam i386 0.22.0+ds-1+b1 [4120 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 python3-six all 1.16.0-6 [16.3 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 python3-pybedtools i386 0.9.1-1+b1 [12.3 MB] Get: 133 http://deb.debian.org/debian trixie/main i386 python3-pyfaidx all 0.8.1.1-1 [29.0 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 python3-pytest all 7.4.4-3 [239 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 python3-simplejson i386 3.19.2-1+b1 [70.7 kB] Fetched 86.9 MB in 2s (52.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package libpython3.11-minimal:i386. Preparing to unpack .../libpython3.11-minimal_3.11.8-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.8-1) ... Selecting previously unselected package libexpat1:i386. 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Setting up python3-minimal (3.11.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21194 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.6-1_i386.deb ... Unpacking python3 (3.11.6-1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../001-libpython3.12-minimal_3.12.2-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.2-1) ... 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Unpacking python3-simplejson (3.19.2-1+b1) ... Setting up libhtscodecs2:i386 (1.6.0-1+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libgraphite2-3:i386 (1.3.14-2) ... Setting up liblcms2-2:i386 (2.14-2+b1) ... Setting up libpixman-1-0:i386 (0.42.2-1+b1) ... Setting up libsharpyuv0:i386 (1.3.2-0.4) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libpsl5:i386 (0.21.2-1+b1) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up liblerc4:i386 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.78.4-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up libpython3.12-minimal:i386 (3.12.2-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:i386 (1.59.0-1) ... Setting up libmagic1:i386 (1:5.45-2+b1) ... Setting up libdeflate0:i386 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libjbig0:i386 (2.1-6.1+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-4+b1) ... Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon May 19 12:51:03 UTC 2025. Universal Time is now: Mon May 19 12:51:03 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:i386 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... 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Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:i386 (1.3.2-0.4) ... Setting up libreadline8:i386 (8.2-3+b1) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:i386 (2.13.2+dfsg-1+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up xml-core (0.19) ... Setting up libx11-6:i386 (2:1.8.7-1) ... Setting up libharfbuzz0b:i386 (8.3.0-2) ... Setting up libfontconfig1:i386 (2.15.0-1.1) ... Setting up libpython3.12-stdlib:i386 (3.12.2-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:i386 (8.5.0-2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.18.0-1+b1) ... Setting up libraqm0:i386 (0.10.1-1+b1) ... Setting up libpython3-stdlib:i386 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up libhts3:i386 (1.19+ds-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-six (1.16.0-6) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-pil:i386 (10.2.0-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-argcomplete (3.1.4-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-more-itertools (10.2.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-argh (0.31.2-1) ... Setting up python3-pysam (0.22.0+ds-1+b1) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-all (3.11.6-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-reportlab (4.1.0-4) ... Setting up dh-python (6.20240401) ... Setting up python3-pybedtools (0.9.1-1+b1) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-pyfaidx (0.8.1.1-1) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/23556/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/23556/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-gffutils-0.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-gffutils_0.13-1_source.changes dpkg-buildpackage: info: source package python-gffutils dpkg-buildpackage: info: source version 0.13-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config I: pybuild base:311: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13' dh_auto_build I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data running build_scripts creating build creating build/scripts-3.12 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.12 changing mode of build/scripts-3.12/gffutils-cli from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data running build_scripts creating build/scripts-3.11 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.11 changing mode of build/scripts-3.11/gffutils-cli from 644 to 755 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --name="Command line interface for python-gffutils." \ gffutils-cli > debian/gffutils-cli.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_fetch \- Fetch IDs") \ 'gffutils-cli fetch' > debian/gffutils-cli-fetch.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_children \- Fetch children from the database according to ID") \ 'gffutils-cli children' > debian/gffutils-cli-children.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_parents \- Fetch parents from the database according to ID") \ 'gffutils-cli parents' > debian/gffutils-cli-parents.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_region \- Returns features within provided genomic coordinates") \ 'gffutils-cli region' > debian/gffutils-cli-region.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_create \- Create a database") \ 'gffutils-cli create' > debian/gffutils-cli-create.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_common \- Identify child features in common") \ 'gffutils-cli common' > debian/gffutils-cli-common.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_clean \- Perform various QC operations to clean a GFF or GTF file") \ 'gffutils-cli clean' > debian/gffutils-cli-clean.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_sanitize \- Sanitize a GFF file") \ 'gffutils-cli sanitize' > debian/gffutils-cli-sanitize.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_rmdups \- Remove duplicates from a GFF file") \ 'gffutils-cli rmdups' > debian/gffutils-cli-rmdups.1 make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13' PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path dh_auto_test I: pybuild base:311: cd /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build; python3.12 -m pytest --doctest-modules -m 'not slow' ============================= test session starts ============================== platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 rootdir: /build/reproducible-path/python-gffutils-0.13 collected 112 items gffutils/attributes.py . [ 0%] gffutils/pybedtools_integration.py . [ 1%] gffutils/test/feature_test.py ........... [ 11%] gffutils/test/helpers_test.py .. [ 13%] gffutils/test/parser_test.py .................. [ 29%] gffutils/test/test_1.py ...........x..........s........... [ 59%] gffutils/test/test_biopython_integration.py . [ 60%] gffutils/test/test_cli.py . [ 61%] gffutils/test/test_issues.py ........................ [ 83%] gffutils/test/test_iterators.py .... [ 86%] gffutils/test/test_merge.py ......... [ 94%] gffutils/test/test_merge_all.py ...... [100%] =============================== warnings summary =============================== gffutils/test/performance_evaluation.py:190 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow gffutils/test/performance_evaluation.py:208 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py:485 .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py:485: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_region will be ignored .pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string /usr/lib/python3/dist-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but .pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( .pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py::test_inconsistent_dialect .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py::test_disable_infer .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_issues.py::test_pr_172 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation warnings.warn( .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py::test_disable_infer /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 2.21s ============= I: pybuild pybuild:334: find . -name tmp.db -delete I: pybuild base:311: cd /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build; python3.11 -m pytest --doctest-modules -m 'not slow' ============================= test session starts ============================== platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.4.0 rootdir: /build/reproducible-path/python-gffutils-0.13 collected 112 items gffutils/attributes.py . [ 0%] gffutils/pybedtools_integration.py . [ 1%] gffutils/test/feature_test.py ........... [ 11%] gffutils/test/helpers_test.py .. [ 13%] gffutils/test/parser_test.py .................. [ 29%] gffutils/test/test_1.py ...........x..........s........... [ 59%] gffutils/test/test_biopython_integration.py . [ 60%] gffutils/test/test_cli.py . [ 61%] gffutils/test/test_issues.py ........................ [ 83%] gffutils/test/test_iterators.py .... [ 86%] gffutils/test/test_merge.py ......... [ 94%] gffutils/test/test_merge_all.py ...... [100%] =============================== warnings summary =============================== gffutils/test/performance_evaluation.py:190 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow gffutils/test/performance_evaluation.py:208 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py:485 .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py:485: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_region will be ignored .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string /usr/lib/python3/dist-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py::test_inconsistent_dialect .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py::test_disable_infer .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_issues.py::test_pr_172 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation warnings.warn( .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py::test_disable_infer /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 2.10s ============= I: pybuild pybuild:334: find . -name tmp.db -delete make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-gffutils/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12 creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts/__pycache__/gffutils-flybase-convert.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/helpers.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/create.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/interface.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/constants.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/feature.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/gffwriter.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/interface.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/version.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/iterators.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/gffwriter.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/create.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/convert.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/attributes.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/helpers.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/inspect.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/bins.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/exceptions.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/attributes.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/iterators.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/feature.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/constants.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/bins.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/exceptions.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/parser.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/conftest.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_cli.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_issues.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_1.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_iterators.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/performance_evaluation.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/expected.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/issue_213.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/tmp.db.bak -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/iterators.py to iterators.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/convert.py to convert.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/exceptions.py to exceptions.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/bins.py to bins.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/helpers.py to helpers.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/inspect.py to inspect.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/create.py to create.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/feature.py to feature.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_1.py to test_1.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/conftest.py to conftest.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_issues.py to test_issues.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_iterators.py to test_iterators.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/expected.py to expected.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/performance_evaluation.py to performance_evaluation.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/constants.py to constants.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/attributes.py to attributes.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/interface.py to interface.cpython-312.pyc running install_egg_info running egg_info creating gffutils.egg-info writing gffutils.egg-info/PKG-INFO writing dependency_links to gffutils.egg-info/dependency_links.txt writing requirements to gffutils.egg-info/requires.txt writing top-level names to gffutils.egg-info/top_level.txt writing manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.rst' under directory 'docs/source' warning: no files found matching '*.py' under directory 'docs/source' warning: no files found matching '*' under directory 'docs/source/images' warning: no files found matching 'docs/Makefile' warning: no files found matching 'docs/make.bat' warning: no files found matching 'gffutils/test/data/__init__.py' warning: no files found matching 'gffutils/test/data/t.py' adding license file 'LICENSE' writing manifest file 'gffutils.egg-info/SOURCES.txt' Copying gffutils.egg-info to /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils-0.13.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin copying build/scripts-3.12/gffutils-cli -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin changing mode of /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin/gffutils-cli to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11 creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts/__pycache__/gffutils-flybase-convert.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/helpers.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/create.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/interface.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/constants.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/feature.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/version.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/iterators.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/gffwriter.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/inspect.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/bins.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/convert.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/attributes.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/exceptions.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/parser.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_1.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_cli.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/expected.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_iterators.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_issues.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/conftest.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/performance_evaluation.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/issue_213.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/tmp.db.bak -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/iterators.py to iterators.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/convert.py to convert.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/exceptions.py to exceptions.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/bins.py to bins.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/helpers.py to helpers.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/inspect.py to inspect.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/create.py to create.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/feature.py to feature.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_1.py to test_1.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/conftest.py to conftest.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_cli.py to test_cli.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_issues.py to test_issues.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_iterators.py to test_iterators.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/expected.py to expected.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/performance_evaluation.py to performance_evaluation.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/parser.py to parser.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/version.py to version.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/constants.py to constants.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/attributes.py to attributes.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/interface.py to interface.cpython-311.pyc running install_egg_info running egg_info writing gffutils.egg-info/PKG-INFO writing dependency_links to gffutils.egg-info/dependency_links.txt writing requirements to gffutils.egg-info/requires.txt writing top-level names to gffutils.egg-info/top_level.txt reading manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.rst' under directory 'docs/source' warning: no files found matching '*.py' under directory 'docs/source' warning: no files found matching '*' under directory 'docs/source/images' warning: no files found matching 'docs/Makefile' warning: no files found matching 'docs/make.bat' warning: no files found matching 'gffutils/test/data/__init__.py' warning: no files found matching 'gffutils/test/data/t.py' adding license file 'LICENSE' writing manifest file 'gffutils.egg-info/SOURCES.txt' Copying gffutils.egg-info to /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils-0.13.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.11/gffutils-cli -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin changing mode of /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin/gffutils-cli to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13' dh_install find debian -name "*.bak" -delete find debian -name "issue_*.db" -delete make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-gffutils' in '../python3-gffutils_0.13-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-gffutils_0.13-1_i386.buildinfo dpkg-genchanges --build=binary -O../python-gffutils_0.13-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/23556/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/23556/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23556 and its subdirectories I: Current time: Tue May 20 02:52:09 +14 2025 I: pbuilder-time-stamp: 1747659129