I: pbuilder: network access will be disabled during build I: Current time: Mon May 12 11:46:23 +14 2025 I: pbuilder-time-stamp: 1746999983 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-deeptoolsintervals_0.1.9-3.dsc] I: copying [./python-deeptoolsintervals_0.1.9.orig.tar.gz] I: copying [./python-deeptoolsintervals_0.1.9-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jul 21 15:18:36 2020 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-deeptoolsintervals_0.1.9-3.dsc: no acceptable signature found dpkg-source: info: extracting python-deeptoolsintervals in python-deeptoolsintervals-0.1.9 dpkg-source: info: unpacking python-deeptoolsintervals_0.1.9.orig.tar.gz dpkg-source: info: unpacking python-deeptoolsintervals_0.1.9-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/98955/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 11 21:46 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/98955/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/98955/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=024da1222c0442c48ad5ed46f819c1c6 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=98955 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SQNgoVRD/pbuilderrc_29rl --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SQNgoVRD/b2 --logfile b2/build.log python-deeptoolsintervals_0.1.9-3.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 9 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/98955/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19875 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 48.7 MB of archives. After unpacking 187 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.8-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.8-1 [2087 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.6-1 [26.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-1 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-3 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libreadline8 i386 8.2-3+b1 [171 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.8-1 [1821 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.8-1 [597 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.6-1 [9224 B] Get: 13 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.6-1 [26.2 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.2-1 [807 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.2-1 [2244 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.11.5-1 [131 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240401 [107 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.5.0-2+b2 [159 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libpython3.11 i386 3.11.8-1 [2009 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3+b1 [915 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libpython3.11-dev i386 3.11.8-1 [4726 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.11.6-1 [9496 B] Get: 59 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.2-1 [1927 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libpython3.12 i386 3.12.2-1 [2156 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.2-1 [5108 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.11.6-1 [1072 B] Get: 63 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.2-1 [653 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.11.6-1 [1060 B] Get: 65 http://deb.debian.org/debian trixie/main i386 python3.11-dev i386 3.11.8-1 [509 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.11.6-1 [26.1 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.2-1 [507 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.11.6-1 [1080 B] Fetched 48.7 MB in 1s (85.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19875 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.8-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-2+b2_i386.deb ... Unpacking libexpat1:i386 (2.5.0-2+b2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-1_i386.deb ... Unpacking python3.11-minimal (3.11.8-1) ... Setting up libpython3.11-minimal:i386 (3.11.8-1) ... Setting up libexpat1:i386 (2.5.0-2+b2) ... Setting up python3.11-minimal (3.11.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20192 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.6-1_i386.deb ... Unpacking python3-minimal (3.11.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-1_all.deb ... Unpacking tzdata (2024a-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../5-libreadline8_8.2-3+b1_i386.deb ... Unpacking libreadline8:i386 (8.2-3+b1) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.8-1_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.8-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.8-1_i386.deb ... Unpacking python3.11 (3.11.8-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.11.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.6-1) ... Setting up python3-minimal (3.11.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21180 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.6-1_i386.deb ... Unpacking python3 (3.11.6-1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../01-libpython3.12-minimal_3.12.2-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.2-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../02-python3.12-minimal_3.12.2-1_i386.deb ... Unpacking python3.12-minimal (3.12.2-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../05-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../08-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../11-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... 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Setting up libpython3.11-stdlib:i386 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12:i386 (3.12.2-1) ... Setting up libpython3-stdlib:i386 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up libpython3.11:i386 (3.11.8-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up libpython3.12-dev:i386 (3.12.2-1) ... Setting up libpython3.11-dev:i386 (3.11.8-1) ... Setting up python3.12-dev (3.12.2-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up libpython3-dev:i386 (3.11.6-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3.11-dev (3.11.8-1) ... Setting up python3-all (3.11.6-1) ... Setting up libpython3-all-dev:i386 (3.11.6-1) ... Setting up python3-dev (3.11.6-1) ... Setting up dh-python (6.20240401) ... Setting up python3-all-dev (3.11.6-1) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/98955/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/98955/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-deeptoolsintervals-0.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-deeptoolsintervals_0.1.9-3_source.changes dpkg-buildpackage: info: source package python-deeptoolsintervals dpkg-buildpackage: info: source version 0.1.9-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from python-deeptoolsintervals-0.1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running clean removing '/build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running clean removing '/build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-deeptoolsintervals.substvars debian/files rm -fr -- debian/python3-deeptoolsintervals/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running config I: pybuild base:311: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.11" I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals copying deeptoolsintervals/parse.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals copying deeptoolsintervals/__init__.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals copying deeptoolsintervals/enrichment.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals running egg_info creating deeptoolsintervals.egg-info writing deeptoolsintervals.egg-info/PKG-INFO writing dependency_links to deeptoolsintervals.egg-info/dependency_links.txt writing top-level names to deeptoolsintervals.egg-info/top_level.txt writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' reading manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'deeptoolsintervals/tree.*' adding license file 'LICENSE' writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.test' to be distributed and are already explicitly excluding 'deeptoolsintervals.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.tree' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.tree' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.tree' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.tree' to be distributed and are already explicitly excluding 'deeptoolsintervals.tree' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed6 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.labels.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/noOverlaps.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/strands.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/findOverlaps.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/gtf.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/gtf.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/hashTable.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/kseq.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/kstring.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/murmur3.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/murmur3.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/tree.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/tree.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree running build_ext building 'deeptoolsintervals.tree' extension creating build creating build/temp.linux-i686-cpython-312 creating build/temp.linux-i686-cpython-312/deeptoolsintervals creating build/temp.linux-i686-cpython-312/deeptoolsintervals/tree i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/include/python3.12 -c deeptoolsintervals/tree/findOverlaps.c -o build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/findOverlaps.o i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/include/python3.12 -c deeptoolsintervals/tree/gtf.c -o build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/gtf.o deeptoolsintervals/tree/gtf.c: In function 'destroyGTFtree': deeptoolsintervals/tree/gtf.c:58:15: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int32_t' {aka 'int'} [-Wsign-compare] 58 | for(i=0; in_targets; i++) { | ^ i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/include/python3.12 -c deeptoolsintervals/tree/hashTable.c -o build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/hashTable.o deeptoolsintervals/tree/hashTable.c: In function 'rehashHT': deeptoolsintervals/tree/hashTable.c:55:15: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 55 | for(i=0; il; i++) { | ^ deeptoolsintervals/tree/hashTable.c: In function 'growHT': deeptoolsintervals/tree/hashTable.c:72:19: warning: comparison of integer expressions of different signedness: 'int' and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 72 | for(i=ht->l; im; i++) { | ^ deeptoolsintervals/tree/hashTable.c: In function 'destroyHT': deeptoolsintervals/tree/hashTable.c:103:15: warning: comparison of integer expressions of different signedness: 'int' and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 103 | for(i=0; il; i++) free(ht->str[i]); | ^ deeptoolsintervals/tree/hashTable.c:105:15: warning: comparison of integer expressions of different signedness: 'int' and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 105 | for(i=0; im; i++) { | ^ deeptoolsintervals/tree/hashTable.c: In function 'val2strHT': deeptoolsintervals/tree/hashTable.c:139:11: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 139 | if(val>=ht->l) return NULL; | ^~ i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/include/python3.12 -c deeptoolsintervals/tree/murmur3.c -o build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/murmur3.o i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/include/python3.12 -c deeptoolsintervals/tree/tree.c -o build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/tree.o deeptoolsintervals/tree/tree.c: In function 'Numeric2Uint': deeptoolsintervals/tree/tree.c:49:10: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare] 49 | if(l > 0xFFFFFFFF) { | ^ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/findOverlaps.o build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/gtf.o build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/hashTable.o build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/murmur3.o build/temp.linux-i686-cpython-312/deeptoolsintervals/tree/tree.o -L/usr/lib/i386-linux-gnu -L/usr/lib/python3.12/config-3.12-i386-linux-gnu -L/usr/lib/i386-linux-gnu -lz -lpython3.12 -o /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree.cpython-312-i386-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals copying deeptoolsintervals/parse.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals copying deeptoolsintervals/__init__.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals copying deeptoolsintervals/enrichment.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals running egg_info writing deeptoolsintervals.egg-info/PKG-INFO writing dependency_links to deeptoolsintervals.egg-info/dependency_links.txt writing top-level names to deeptoolsintervals.egg-info/top_level.txt reading manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'deeptoolsintervals/tree.*' adding license file 'LICENSE' writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.test' to be distributed and are already explicitly excluding 'deeptoolsintervals.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.tree' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.tree' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.tree' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.tree' to be distributed and are already explicitly excluding 'deeptoolsintervals.tree' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed6 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.labels.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/noOverlaps.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/strands.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/findOverlaps.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/gtf.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/gtf.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/hashTable.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/kseq.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/kstring.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/murmur3.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/murmur3.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/tree.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/tree.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree running build_ext building 'deeptoolsintervals.tree' extension creating build/temp.linux-i686-cpython-311 creating build/temp.linux-i686-cpython-311/deeptoolsintervals creating build/temp.linux-i686-cpython-311/deeptoolsintervals/tree i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/findOverlaps.c -o build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/findOverlaps.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/gtf.c -o build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/gtf.o deeptoolsintervals/tree/gtf.c: In function 'destroyGTFtree': deeptoolsintervals/tree/gtf.c:58:15: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int32_t' {aka 'int'} [-Wsign-compare] 58 | for(i=0; in_targets; i++) { | ^ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/hashTable.c -o build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/hashTable.o deeptoolsintervals/tree/hashTable.c: In function 'rehashHT': deeptoolsintervals/tree/hashTable.c:55:15: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 55 | for(i=0; il; i++) { | ^ deeptoolsintervals/tree/hashTable.c: In function 'growHT': deeptoolsintervals/tree/hashTable.c:72:19: warning: comparison of integer expressions of different signedness: 'int' and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 72 | for(i=ht->l; im; i++) { | ^ deeptoolsintervals/tree/hashTable.c: In function 'destroyHT': deeptoolsintervals/tree/hashTable.c:103:15: warning: comparison of integer expressions of different signedness: 'int' and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 103 | for(i=0; il; i++) free(ht->str[i]); | ^ deeptoolsintervals/tree/hashTable.c:105:15: warning: comparison of integer expressions of different signedness: 'int' and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 105 | for(i=0; im; i++) { | ^ deeptoolsintervals/tree/hashTable.c: In function 'val2strHT': deeptoolsintervals/tree/hashTable.c:139:11: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 139 | if(val>=ht->l) return NULL; | ^~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/murmur3.c -o build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/murmur3.o i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/tree.c -o build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/tree.o deeptoolsintervals/tree/tree.c: In function 'Numeric2Uint': deeptoolsintervals/tree/tree.c:49:10: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare] 49 | if(l > 0xFFFFFFFF) { | ^ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/findOverlaps.o build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/gtf.o build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/hashTable.o build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/murmur3.o build/temp.linux-i686-cpython-311/deeptoolsintervals/tree/tree.o -L/usr/lib/i386-linux-gnu -L/usr/lib/python3.11/config-3.11-i386-linux-gnu -L/usr/lib/i386-linux-gnu -lz -lpython3.11 -o /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree.cpython-311-i386-linux-gnu.so dh_auto_test -O--buildsystem=pybuild pybuild --test -i python{version} -p "3.12 3.11" I: pybuild base:311: cd /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK rm -fr -- /tmp/dh-xdg-rundir-mB1TO8Zw create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-deeptoolsintervals.substvars rm -fr -- debian/.debhelper/generated/python3-deeptoolsintervals/ debian/python3-deeptoolsintervals/ debian/tmp/ dh_auto_install --destdir=debian/python3-deeptoolsintervals/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals pybuild --install -i python{version} -p "3.12 3.11" --dest-dir /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing deeptoolsintervals.egg-info/PKG-INFO writing dependency_links to deeptoolsintervals.egg-info/dependency_links.txt writing top-level names to deeptoolsintervals.egg-info/top_level.txt reading manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'deeptoolsintervals/tree.*' adding license file 'LICENSE' writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.test' to be distributed and are already explicitly excluding 'deeptoolsintervals.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.tree' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.tree' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.tree' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.tree' to be distributed and are already explicitly excluding 'deeptoolsintervals.tree' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12 creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/gtf.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/kseq.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/hashTable.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/tree.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/findOverlaps.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/gtf.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/kstring.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/murmur3.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/tree.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree/murmur3.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/parse.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.labels.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed6 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test/strands.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test/noOverlaps.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/tree.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/__init__.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/__pycache__/enrichment.cpython-312.pyc -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.12_deeptoolsintervals/build/deeptoolsintervals/enrichment.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals byte-compiling /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/parse.py to parse.cpython-312.pyc byte-compiling /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals/enrichment.py to enrichment.cpython-312.pyc running install_egg_info Copying deeptoolsintervals.egg-info to /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages/deeptoolsintervals-0.1.9.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing deeptoolsintervals.egg-info/PKG-INFO writing dependency_links to deeptoolsintervals.egg-info/dependency_links.txt writing top-level names to deeptoolsintervals.egg-info/top_level.txt reading manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'deeptoolsintervals/tree.*' adding license file 'LICENSE' writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.test' to be distributed and are already explicitly excluding 'deeptoolsintervals.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.tree' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.tree' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.tree' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.tree' to be distributed and are already explicitly excluding 'deeptoolsintervals.tree' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11 creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/gtf.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/kseq.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/hashTable.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/tree.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/findOverlaps.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/gtf.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/kstring.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/murmur3.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/tree.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree/murmur3.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/parse.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.labels.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed6 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test/strands.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test/noOverlaps.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/tree.cpython-311-i386-linux-gnu.so -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/__init__.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/__pycache__/parse.cpython-311.pyc -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/__pycache__/enrichment.cpython-311.pyc -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.11_deeptoolsintervals/build/deeptoolsintervals/enrichment.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals byte-compiling /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/parse.py to parse.cpython-311.pyc byte-compiling /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals/enrichment.py to enrichment.cpython-311.pyc running install_egg_info Copying deeptoolsintervals.egg-info to /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages/deeptoolsintervals-0.1.9.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals install -p -m0644 debian/copyright debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals install -p -m0644 debian/.debhelper/generated/python3-deeptoolsintervals/dh_installchangelogs.dch.trimmed debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals/changelog.Debian dh_installexamples -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals/examples cp --reflink=auto -a ./debian/tests/sample_test.py debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals/examples dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240401 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:174: source=python-deeptoolsintervals, binary packages=['python3-deeptoolsintervals'] D: dh_python3 dh_python3:204: processing package python3-deeptoolsintervals... D: dh_python3 fs:50: moving files from debian/python3-deeptoolsintervals/usr/lib/python3.11/dist-packages to debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-deeptoolsintervals/usr/lib/python3.12/dist-packages to debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package python3-deeptoolsintervals details = {'requires.txt': set(), 'egg-info': {'debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals-0.1.9.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.11'), Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-deeptoolsintervals D: dh_python3 depends:253: D={'python3 (<< 3.13)', 'python3 (>= 3.11~)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild Using 1595335582 as canonical time Normalizing debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/test/GRCh38.84.2.gtf.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/test/GRCh38.84.gtf.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-deeptoolsintervals chmod a-x usr/share/doc/python3-deeptoolsintervals/changelog.Debian gzip -9nf usr/share/doc/python3-deeptoolsintervals/changelog.Debian cd '/build/reproducible-path/python-deeptoolsintervals-0.1.9' dh_fixperms -O--buildsystem=pybuild find debian/python3-deeptoolsintervals ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-deeptoolsintervals/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-deeptoolsintervals/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-deeptoolsintervals/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-deeptoolsintervals -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-deeptoolsintervals/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/python3-deeptoolsintervals/usr/lib/debug/.dwz/i386-linux-gnu/python3-deeptoolsintervals.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/python3-deeptoolsintervals.debug -- debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-311-i386-linux-gnu.so debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-312-i386-linux-gnu.so objcopy --compress-debug-sections debian/python3-deeptoolsintervals/usr/lib/debug/.dwz/i386-linux-gnu/python3-deeptoolsintervals.debug chmod 0644 -- debian/python3-deeptoolsintervals/usr/lib/debug/.dwz/i386-linux-gnu/python3-deeptoolsintervals.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-312-i386-linux-gnu.so debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/de/890573f539dc7fb023cc981c1967646e46babe.debug chmod 0644 -- debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/de/890573f539dc7fb023cc981c1967646e46babe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-312-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/de/890573f539dc7fb023cc981c1967646e46babe.debug debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-312-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/4f objcopy --only-keep-debug --compress-debug-sections debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-311-i386-linux-gnu.so debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/4f/8d1b95d8ded37938697733f89c695660fe6c08.debug chmod 0644 -- debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/4f/8d1b95d8ded37938697733f89c695660fe6c08.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-311-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/4f/8d1b95d8ded37938697733f89c695660fe6c08.debug debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-311-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-deeptoolsintervals/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-deeptoolsintervals/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-deeptoolsintervals/usr/lib/debug install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/share/doc ln -s python3-deeptoolsintervals debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/share/doc/python3-deeptoolsintervals-dbgsym install -m0755 -d debian/.debhelper/python3-deeptoolsintervals dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-deeptoolsintervals/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/DEBIAN dpkg-shlibdeps -Tdebian/python3-deeptoolsintervals.substvars debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-312-i386-linux-gnu.so debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-311-i386-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-deeptoolsintervals/DEBIAN/postinst cat debian/python3-deeptoolsintervals.postinst.debhelper >> debian/python3-deeptoolsintervals/DEBIAN/postinst chmod 0755 -- debian/python3-deeptoolsintervals/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-deeptoolsintervals/DEBIAN/prerm cat debian/python3-deeptoolsintervals.prerm.debhelper >> debian/python3-deeptoolsintervals/DEBIAN/prerm chmod 0755 -- debian/python3-deeptoolsintervals/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/DEBIAN echo misc:Depends= >> debian/python3-deeptoolsintervals.substvars echo misc:Pre-Depends= >> debian/python3-deeptoolsintervals.substvars install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-deeptoolsintervals -ldebian/changelog -Tdebian/python3-deeptoolsintervals.substvars -cdebian/control -Pdebian/.debhelper/python3-deeptoolsintervals/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-deeptoolsintervals-dbgsym "-DDepends=python3-deeptoolsintervals (= \${binary:Version})" "-DDescription=debug symbols for python3-deeptoolsintervals" "-DBuild-Ids=4f8d1b95d8ded37938697733f89c695660fe6c08 de890573f539dc7fb023cc981c1967646e46babe" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-deeptoolsintervals -ldebian/changelog -Tdebian/python3-deeptoolsintervals.substvars -cdebian/control -Pdebian/python3-deeptoolsintervals chmod 0644 -- debian/python3-deeptoolsintervals/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/DEBIAN cd debian/python3-deeptoolsintervals >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-deeptoolsintervals/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/DEBIAN cd debian/.debhelper/python3-deeptoolsintervals/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-deeptoolsintervals .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-deeptoolsintervals/dbgsym-root .. dpkg-deb: building package 'python3-deeptoolsintervals' in '../python3-deeptoolsintervals_0.1.9-3_i386.deb'. dpkg-deb: building package 'python3-deeptoolsintervals-dbgsym' in '../python3-deeptoolsintervals-dbgsym_0.1.9-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../python-deeptoolsintervals_0.1.9-3_i386.buildinfo dpkg-genchanges --build=binary -O../python-deeptoolsintervals_0.1.9-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-deeptoolsintervals-0.1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/98955/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/98955/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/98955 and its subdirectories I: Current time: Mon May 12 11:47:04 +14 2025 I: pbuilder-time-stamp: 1747000024