I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 8 04:31:23 -12 2025 I: pbuilder-time-stamp: 1751992283 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [nanosv_1.2.4+git20190409.c1ae30c-6.dsc] I: copying [./nanosv_1.2.4+git20190409.c1ae30c.orig.tar.xz] I: copying [./nanosv_1.2.4+git20190409.c1ae30c-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 24 22:09:09 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nanosv_1.2.4+git20190409.c1ae30c-6.dsc: no acceptable signature found dpkg-source: info: extracting nanosv in nanosv-1.2.4+git20190409.c1ae30c dpkg-source: info: unpacking nanosv_1.2.4+git20190409.c1ae30c.orig.tar.xz dpkg-source: info: unpacking nanosv_1.2.4+git20190409.c1ae30c-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_setup.patch dpkg-source: info: applying python3_has_buildin_configparser.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/86555/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='54bde33d2c5f4f07b22db68a22fd5f4e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='86555' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vFjSLy8f/pbuilderrc_tF3X --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vFjSLy8f/b1 --logfile b1/build.log nanosv_1.2.4+git20190409.c1ae30c-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jul 5 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/86555/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, help2man, python3-vcf dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19683 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3-vcf; however: Package python3-vcf is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-pysam{a} python3-setuptools{a} python3-vcf{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 39.7 MB of archives. After unpacking 175 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-7 [15.1 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.9-1 [1918 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.8-1 [9336 B] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.3-1 [809 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.3-1 [2224 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.1-4 [100 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 38 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.12.3-3.1 [131 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240422 [107 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 57 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.17+dfsg-1 [198 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.61.0-1+b1 [84.0 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-5 [225 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.8.0-1 [469 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.0-1+b1 [68.5 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.20+ds-1 [495 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.3-1 [1945 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.3-1 [659 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.11.8-1 [1056 B] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-pysam i386 0.22.1+ds-2 [4848 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 python3-vcf i386 0.6.8+git20170215.476169c-10 [56.9 kB] Fetched 39.7 MB in 0s (79.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19683 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:i386. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.9-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_i386.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:i386 (3.11.9-1) ... Setting up libexpat1:i386 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20013 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_i386.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../5-libreadline8t64_8.2-4_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_i386.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21005 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_i386.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../01-libpython3.12-minimal_3.12.3-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../02-python3.12-minimal_3.12.3-1_i386.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../08-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.1-4_i386.deb ... Unpacking bsdextrautils (2.40.1-4) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../11-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... 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Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up autopoint (0.21-14) ... Setting up libk5crypto3:i386 (1.20.1-6+b1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-6) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:i386 (1.20.1-6+b1) ... Setting up libssh2-1t64:i386 (1.11.0-5) ... Setting up readline-common (8.2-4) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up gettext (0.21-14+b1) ... 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Setting up python3-distutils (3.12.3-3.1) ... python3.12: can't get files for byte-compilation Setting up python3-pysam (0.22.1+ds-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-all (3.11.8-1) ... Setting up python3-vcf (0.6.8+git20170215.476169c-10) ... /usr/lib/python3/dist-packages/vcf/parser.py:278: SyntaxWarning: invalid escape sequence '\[' self._alt_pattern = re.compile('[\[\]]') /usr/lib/python3/dist-packages/vcf/parser.py:536: SyntaxWarning: invalid escape sequence '\[' remoteOrientation = (re.search('\[', str) is not None) Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nanosv_1.2.4+git20190409.c1ae30c-6_source.changes dpkg-buildpackage: info: source package nanosv dpkg-buildpackage: info: source version 1.2.4+git20190409.c1ae30c-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from nanosv-1.2.4+git20190409.c1ae30c/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_auto_clean pybuild --clean -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running clean removing '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running clean removing '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -rf /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/python3-nanosv* rm -f /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/NanoSV.1 make[1]: Leaving directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/nanosv.substvars debian/files rm -fr -- debian/nanosv/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running config I: pybuild base:311: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.11" I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running build running build_py creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv copying nanosv/NanoSV.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv copying nanosv/version.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv copying nanosv/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/coverage.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/parse_bam.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/create_vcf.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/phasing.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/parse_breakpoints.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/parse_reads.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/parse_svs.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/read.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/sv.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/segment.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/variant.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/breakpoint.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/config.ini -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/bedfiles copying nanosv/bedfiles/human_hg19.bed -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/bedfiles I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running build running build_py creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv copying nanosv/NanoSV.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv copying nanosv/version.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv copying nanosv/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/coverage.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/parse_bam.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/create_vcf.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/phasing.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/parse_breakpoints.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/parse_reads.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/parse_svs.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/read.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/sv.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/segment.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/variant.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/breakpoint.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/config.ini -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/bedfiles copying nanosv/bedfiles/human_hg19.bed -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/bedfiles debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' echo "I: Do nothing" I: Do nothing make[1]: Leaving directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/nanosv.substvars rm -fr -- debian/.debhelper/generated/nanosv/ debian/nanosv/ debian/tmp/ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_auto_install install -m0755 -d /build/reproducible-path/nanosv-1.2.4\+git20190409.c1ae30c/debian/nanosv pybuild --install -i python{version} -p "3.12 3.11" --dest-dir /build/reproducible-path/nanosv-1.2.4\+git20190409.c1ae30c/debian/nanosv I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12 creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/NanoSV.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/bedfiles copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/bedfiles/human_hg19.bed -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/bedfiles creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/read.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/sv.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/segment.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/variant.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/breakpoint.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/config.ini -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/version.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/coverage.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/parse_bam.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/create_vcf.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/phasing.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/parse_breakpoints.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/parse_reads.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/parse_svs.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/NanoSV.py to NanoSV.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/read.py to read.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/sv.py to sv.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/segment.py to segment.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/variant.py to variant.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/breakpoint.py to breakpoint.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/coverage.py to coverage.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py to parse_bam.cpython-312.pyc /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:43: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:206: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:210: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:392: SyntaxWarning: invalid escape sequence '\^' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:416: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:418: SyntaxWarning: invalid escape sequence '\D' byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/create_vcf.py to create_vcf.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/phasing.py to phasing.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/parse_breakpoints.py to parse_breakpoints.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/parse_reads.py to parse_reads.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/parse_svs.py to parse_svs.cpython-312.pyc running install_egg_info running egg_info creating NanoSV.egg-info writing NanoSV.egg-info/PKG-INFO writing dependency_links to NanoSV.egg-info/dependency_links.txt writing entry points to NanoSV.egg-info/entry_points.txt writing requirements to NanoSV.egg-info/requires.txt writing top-level names to NanoSV.egg-info/top_level.txt writing manifest file 'NanoSV.egg-info/SOURCES.txt' reading manifest file 'NanoSV.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' adding license file 'LICENSE' writing manifest file 'NanoSV.egg-info/SOURCES.txt' Copying NanoSV.egg-info to /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/NanoSV-1.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing NanoSV script to /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11 creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/NanoSV.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/bedfiles copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/bedfiles/human_hg19.bed -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/bedfiles creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/read.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/sv.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/segment.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/variant.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/breakpoint.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/config.ini -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/version.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/coverage.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/parse_bam.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/create_vcf.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/phasing.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/parse_breakpoints.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/parse_reads.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/parse_svs.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/NanoSV.py to NanoSV.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/read.py to read.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/sv.py to sv.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/segment.py to segment.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/variant.py to variant.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/breakpoint.py to breakpoint.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/version.py to version.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/coverage.py to coverage.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/parse_bam.py to parse_bam.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/create_vcf.py to create_vcf.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/phasing.py to phasing.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/parse_breakpoints.py to parse_breakpoints.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/parse_reads.py to parse_reads.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/parse_svs.py to parse_svs.cpython-311.pyc running install_egg_info running egg_info writing NanoSV.egg-info/PKG-INFO writing dependency_links to NanoSV.egg-info/dependency_links.txt writing entry points to NanoSV.egg-info/entry_points.txt writing requirements to NanoSV.egg-info/requires.txt writing top-level names to NanoSV.egg-info/top_level.txt reading manifest file 'NanoSV.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' adding license file 'LICENSE' writing manifest file 'NanoSV.egg-info/SOURCES.txt' Copying NanoSV.egg-info to /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/NanoSV-1.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing NanoSV script to /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/bin find /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian -name "*.bed" -o -name "*.ini" | xargs -r chmod -x PYTHONPATH=./debian/nanosv/usr/lib/python3.11/dist-packages/ help2man --include=debian/NanoSV.h2m ./debian/nanosv/usr/bin/NanoSV > /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/NanoSV.1 make[1]: Leaving directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/nanosv/usr/share/doc/nanosv install -m0755 -d debian/nanosv/usr/share/doc/nanosv cp --reflink=auto -a ./README.md debian/nanosv/usr/share/doc/nanosv cp --reflink=auto -a ./debian/README.test debian/nanosv/usr/share/doc/nanosv cp --reflink=auto -a ./debian/tests/run-unit-test debian/nanosv/usr/share/doc/nanosv chmod -R u\+rw,go=rX debian/nanosv/usr/share/doc install -p -m0644 debian/copyright debian/nanosv/usr/share/doc/nanosv/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/nanosv/usr/share/doc/nanosv install -p -m0644 debian/.debhelper/generated/nanosv/dh_installchangelogs.dch.trimmed debian/nanosv/usr/share/doc/nanosv/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/nanosv/usr/share/man/man1/ install -p -m0644 ./debian/NanoSV.1 debian/nanosv/usr/share/man/man1/NanoSV.1 man-recode --to-code UTF-8 --suffix .dh-new debian/nanosv/usr/share/man/man1/NanoSV.1 mv debian/nanosv/usr/share/man/man1/NanoSV.1.dh-new debian/nanosv/usr/share/man/man1/NanoSV.1 chmod 0644 -- debian/nanosv/usr/share/man/man1/NanoSV.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240422 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:174: source=nanosv, binary packages=['nanosv'] D: dh_python3 dh_python3:204: processing package nanosv... D: dh_python3 fs:50: moving files from debian/nanosv/usr/lib/python3.11/dist-packages to debian/nanosv/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/nanosv/usr/lib/python3.12/dist-packages to debian/nanosv/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package nanosv details = {'requires.txt': {'debian/nanosv/usr/lib/python3/dist-packages/NanoSV-1.2.4.egg-info/requires.txt'}, 'egg-info': {'debian/nanosv/usr/lib/python3/dist-packages/NanoSV-1.2.4.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package nanosv D: dh_python3 pydist:173: trying to find dependency for pysam>=0.11 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pyvcf (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-vcf', 'python3-pysam', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/nanosv chmod a-x usr/share/doc/nanosv/README.md usr/share/doc/nanosv/changelog.Debian usr/share/man/man1/NanoSV.1 gzip -9nf usr/share/doc/nanosv/README.md usr/share/doc/nanosv/changelog.Debian usr/share/man/man1/NanoSV.1 cd '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_fixperms -O--buildsystem=pybuild find debian/nanosv ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nanosv/usr/share/doc -type f -a -true -a ! -regex 'debian/nanosv/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nanosv/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nanosv/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nanosv -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nanosv/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/nanosv/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/nanosv/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/nanosv/DEBIAN/postinst cat debian/nanosv.postinst.debhelper >> debian/nanosv/DEBIAN/postinst chmod 0755 -- debian/nanosv/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/nanosv/DEBIAN/prerm cat debian/nanosv.prerm.debhelper >> debian/nanosv/DEBIAN/prerm chmod 0755 -- debian/nanosv/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/nanosv/DEBIAN echo misc:Depends= >> debian/nanosv.substvars echo misc:Pre-Depends= >> debian/nanosv.substvars dpkg-gencontrol -pnanosv -ldebian/changelog -Tdebian/nanosv.substvars -cdebian/control -Pdebian/nanosv chmod 0644 -- debian/nanosv/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/nanosv/DEBIAN cd debian/nanosv >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/nanosv/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/nanosv .. dpkg-deb: building package 'nanosv' in '../nanosv_1.2.4+git20190409.c1ae30c-6_all.deb'. dpkg-genbuildinfo --build=binary -O../nanosv_1.2.4+git20190409.c1ae30c-6_i386.buildinfo dpkg-genchanges --build=binary -O../nanosv_1.2.4+git20190409.c1ae30c-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from nanosv-1.2.4+git20190409.c1ae30c/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/86555 and its subdirectories I: Current time: Tue Jul 8 04:32:15 -12 2025 I: pbuilder-time-stamp: 1751992335