I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 1 11:46:07 -12 2024 I: pbuilder-time-stamp: 1725234367 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [megadepth_1.2.0-4.dsc] I: copying [./megadepth_1.2.0.orig.tar.gz] I: copying [./megadepth_1.2.0-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Aug 6 15:09:45 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./megadepth_1.2.0-4.dsc: no acceptable signature found dpkg-source: info: extracting megadepth in megadepth-1.2.0 dpkg-source: info: unpacking megadepth_1.2.0.orig.tar.gz dpkg-source: info: unpacking megadepth_1.2.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying addCurlLibrary.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15773/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='4c94ece4eac34679bc6564b214cc9e47' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15773' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TXAM8xaK/pbuilderrc_ds4k --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TXAM8xaK/b1 --logfile b1/build.log megadepth_1.2.0-4.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/15773/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libhts-dev, libdeflate-dev, libbigwig-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19760 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libdeflate-dev; however: Package libdeflate-dev is not installed. pbuilder-satisfydepends-dummy depends on libbigwig-dev; however: Package libbigwig-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbigwig-dev{a} libbigwig0t64{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} librhash0{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 54.2 MB of archives. After unpacking 185 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-5 [65.6 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-5 [875 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-7 [101 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libarchive13t64 i386 3.7.4-1 [390 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 26 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-7 [20.5 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-7 [61.0 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3 [200 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.62.1-2 [83.1 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-7 [226 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.9.1-2 [502 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.48.0-5 [156 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.30.2-2 [2221 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 cmake i386 3.30.2-2 [12.5 MB] Get: 42 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libnghttp3-9 i386 1.4.0-1 [74.3 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libngtcp2-16 i386 1.6.0-1 [154 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls8 i386 1.6.0-1 [20.2 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.9.1-2 [511 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libbigwig0t64 i386 0.4.7+dfsg-3.1+b1 [32.5 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libbigwig-dev i386 0.4.7+dfsg-3.1+b1 [42.3 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libbrotli-dev i386 1.1.0-2+b4 [313 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10 [194 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libunbound8 i386 1.20.0-1+b1 [618 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libgnutls-dane0t64 i386 3.8.6-2 [439 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libgnutls-openssl27t64 i386 3.8.6-2 [439 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libidn2-dev i386 2.3.7-2 [125 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libp11-kit-dev i386 0.25.5-2 [208 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libtasn1-6-dev i386 4.19.0-3+b2 [101 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-2+b1 [330 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-2+b1 [659 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 nettle-dev i386 3.10-1 [1333 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libgnutls28-dev i386 3.8.6-2 [1444 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-3 [38.2 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-3 [30.3 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-3 [26.1 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libnghttp2-dev i386 1.62.1-2 [124 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libnghttp3-dev i386 1.4.0-1 [99.2 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls-dev i386 1.6.0-1 [24.7 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libngtcp2-dev i386 1.6.0-1 [206 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libpsl-dev i386 0.21.2-1.1 [78.2 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b4 [72.1 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.3.1-7 [2788 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libssh2-1-dev i386 1.11.0-7 [368 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-1 [352 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libcurl4-gnutls-dev i386 8.9.1-2 [640 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.21-1 [48.0 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libdeflate-dev i386 1.21-1 [57.1 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.20+ds-1 [495 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.2-2 [312 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libhts-dev i386 1.20+ds-1 [1675 kB] Fetched 54.2 MB in 1s (63.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19760 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_i386.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-7_i386.deb ... Unpacking bsdextrautils (2.40.2-7) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../17-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:i386. Preparing to unpack .../19-libarchive13t64_3.7.4-1_i386.deb ... Unpacking libarchive13t64:i386 (3.7.4-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../20-libbrotli1_1.1.0-2+b4_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b4) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../21-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../22-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../23-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../24-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../25-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../26-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:i386. 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Setting up libcom-err2:i386 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up libpsl-dev:i386 (0.21.2-1.1) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-7) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:i386 (1.20.0-1+b1) ... Setting up libpkgconf3:i386 (1.8.1-3) ... Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libgnutls-dane0t64:i386 (3.8.6-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:i386 (2:4.0.4-5) ... Setting up libssl-dev:i386 (3.3.1-7) ... Setting up autopoint (0.22.5-2) ... Setting up libjsoncpp25:i386 (1.9.5-6+b2) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libidn2-dev:i386 (2.3.7-2) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-7) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:i386 (1.4.0-1) ... Setting up libnghttp3-dev:i386 (1.4.0-1) ... Setting up liblzma-dev:i386 (5.6.2-2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up librhash0:i386 (1.4.3-3+b1) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up libngtcp2-16:i386 (1.6.0-1) ... Setting up cmake-data (3.30.2-2) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libssh2-1t64:i386 (1.11.0-7) ... Setting up libtasn1-6-dev:i386 (4.19.0-3+b2) ... Setting up libdeflate-dev:i386 (1.21-1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up libbrotli-dev:i386 (1.1.0-2+b4) ... Setting up libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Setting up libp11-kit-dev:i386 (0.25.5-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:i386 (2:6.3.0+dfsg-2+b1) ... Setting up nettle-dev:i386 (3.10-1) ... Setting up libtool (2.4.7-7) ... Setting up libngtcp2-crypto-gnutls-dev:i386 (1.6.0-1) ... Setting up libngtcp2-dev:i386 (1.6.0-1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Setting up pkgconf:i386 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libssh2-1-dev:i386 (1.11.0-7) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:i386 (3.7.4-1) ... Setting up libgnutls28-dev:i386 (3.8.6-2) ... Setting up libnghttp2-dev:i386 (1.62.1-2) ... Setting up libcurl4t64:i386 (8.9.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:i386 (8.9.1-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up cmake (3.30.2-2) ... Setting up libhts3t64:i386 (1.20+ds-1) ... Setting up libbigwig0t64:i386 (0.4.7+dfsg-3.1+b1) ... Setting up libbigwig-dev:i386 (0.4.7+dfsg-3.1+b1) ... Setting up debhelper (13.20) ... Setting up libcurl4-gnutls-dev:i386 (8.9.1-2) ... Setting up libhts-dev:i386 (1.20+ds-1) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/megadepth-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../megadepth_1.2.0-4_source.changes dpkg-buildpackage: info: source package megadepth dpkg-buildpackage: info: source version 1.2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean if [ ! -r CMakeLists.txt ]; then ln -s CMakeLists.txt.ci CMakeLists.txt; fi #if [ ! -d htslib ]; then mkdir -p htslib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libhts.a htslib/; fi #if [ ! -d libBigWig ]; then mkdir -p libBigWig; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libBigWig.a libBigWig/; fi #if [ ! -d libdeflate ]; then mkdir -p libdeflate; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libdeflate.a libdeflate/; fi #if [ ! -d zlib ]; then mkdir -p zlib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libz.a zlib/; fi dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/megadepth-1.2.0' dh_auto_clean if [ -d zlib_ci ]; then rmdir zlib_ci; fi if [ -d libBigWig_ci ]; then rmdir libBigWig_ci; fi if [ -d libdeflate_ci ]; then rmdir libdeflate_ci; fi if [ -d htslib_ci ]; then rmdir htslib_ci; fi rm -rf htslib libbigwig libBigWig libdeflate libz zlib rm CMakeLists.txt make[1]: Leaving directory '/build/reproducible-path/megadepth-1.2.0' dh_clean debian/rules binary if [ ! -r CMakeLists.txt ]; then ln -s CMakeLists.txt.ci CMakeLists.txt; fi #if [ ! -d htslib ]; then mkdir -p htslib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libhts.a htslib/; fi #if [ ! -d libBigWig ]; then mkdir -p libBigWig; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libBigWig.a libBigWig/; fi #if [ ! -d libdeflate ]; then mkdir -p libdeflate; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libdeflate.a libdeflate/; fi #if [ ! -d zlib ]; then mkdir -p zlib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libz.a zlib/; fi dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu dh_auto_build cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/megadepth-1.2.0 -B/build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu' make -f CMakeFiles/megadepth_dynamic.dir/build.make CMakeFiles/megadepth_dynamic.dir/depend make[3]: Entering directory '/build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu' cd /build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megadepth-1.2.0 /build/reproducible-path/megadepth-1.2.0 /build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu /build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu /build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu/CMakeFiles/megadepth_dynamic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu' make -f CMakeFiles/megadepth_dynamic.dir/build.make CMakeFiles/megadepth_dynamic.dir/build make[3]: Entering directory '/build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu' [ 50%] Building CXX object CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megadepth-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -DMEGADEPTH_VERSION="\"`cat ../VERSION`\"" -std=gnu++11 -MD -MT CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o -MF CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o.d -o CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o -c /build/reproducible-path/megadepth-1.2.0/megadepth.cpp /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:113:22: warning: result of '2^63' is 61; did you mean exponentiation? [-Wxor-used-as-pow] 113 | uint64_t MAX_INT = (2^63); | ^ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:113:21: note: you can silence this warning by using a hexadecimal constant (0x2 rather than 2) 113 | uint64_t MAX_INT = (2^63); | ^ | 0x2 /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = double; htsFile = htsFile]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3504:26: required from here 3504 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3369:72: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] 3369 | fprintf(stderr,"total number of annotations in collapsed: %u\n",num_sizes); | ~^ ~~~~~~~~~ | | | | | long int | unsigned int | %lu /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = long int; htsFile = htsFile]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3506:24: required from here 3506 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3369:72: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] 3369 | fprintf(stderr,"total number of annotations in collapsed: %u\n",num_sizes); | ~^ ~~~~~~~~~ | | | | | long int | unsigned int | %lu /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go_bam(const char*, int, const char**, Op, htsFile*, int, bool, bool, FILE*, BGZF*, annotation_map_t*, chr2bool*, const char*, bool, strlist*, FILE*, uint64_t, uint32_t) [with T = double; htsFile = htsFile; FILE = FILE; BGZF = BGZF; annotation_map_t = robin_hood::detail::Table, std::vector >, robin_hood::hash >, std::equal_to > >; chr2bool = robin_hood::detail::Table, void, robin_hood::hash >, std::equal_to > >; strlist = std::vector; uint64_t = long long unsigned int; uint32_t = unsigned int]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3407:22: required from 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = double; htsFile = htsFile]' 3407 | return go_bam(fname_arg, argc, argv, op, bam_fh, nthreads, keep_order, has_annotation, afp, afpz, &annotations, &annotation_chrs_seen, prefix, sum_annotation, &chrm_order, auc_file, num_annotations, window_size = window_size); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3504:26: required from here 3504 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3292:20: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 3292 | fprintf(stderr,"Read %" PRIu64 " records\n",recs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ | | | size_t {aka unsigned int} /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go_bam(const char*, int, const char**, Op, htsFile*, int, bool, bool, FILE*, BGZF*, annotation_map_t*, chr2bool*, const char*, bool, strlist*, FILE*, uint64_t, uint32_t) [with T = long int; htsFile = htsFile; FILE = FILE; BGZF = BGZF; annotation_map_t = robin_hood::detail::Table, std::vector >, robin_hood::hash >, std::equal_to > >; chr2bool = robin_hood::detail::Table, void, robin_hood::hash >, std::equal_to > >; strlist = std::vector; uint64_t = long long unsigned int; uint32_t = unsigned int]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3407:22: required from 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = long int; htsFile = htsFile]' 3407 | return go_bam(fname_arg, argc, argv, op, bam_fh, nthreads, keep_order, has_annotation, afp, afpz, &annotations, &annotation_chrs_seen, prefix, sum_annotation, &chrm_order, auc_file, num_annotations, window_size = window_size); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3506:24: required from here 3506 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3292:20: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 3292 | fprintf(stderr,"Read %" PRIu64 " records\n",recs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ | | | size_t {aka unsigned int} /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'uint64_t print_array(const char*, char*, int32_t, const T2*, long int, bool, bigWigFile_t*, FILE*, bool, bool, BGZF*, hts_idx_t*, int*, FILE*, BGZF*, int, Op) [with T2 = int; uint64_t = long long unsigned int; int32_t = int; FILE = FILE; BGZF = BGZF; hts_idx_t = hts_idx_t]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:2827:64: required from 'int go_bam(const char*, int, const char**, Op, htsFile*, int, bool, bool, FILE*, BGZF*, annotation_map_t*, chr2bool*, const char*, bool, strlist*, FILE*, uint64_t, uint32_t) [with T = double; htsFile = htsFile; FILE = FILE; BGZF = BGZF; annotation_map_t = robin_hood::detail::Table, std::vector >, robin_hood::hash >, std::equal_to > >; chr2bool = robin_hood::detail::Table, void, robin_hood::hash >, std::equal_to > >; strlist = std::vector; uint64_t = long long unsigned int; uint32_t = unsigned int]' 2827 | all_auc += print_array(cov_prefix, hdr->target_name[ptid], ptid, (int32_t*) coverages.get(), chr_size, false, bwfp, cov_fh, dont_output_coverage, no_region, gcov_fh, cidx, chrms_in_cidx, afp, afpz, window_size, op); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3407:22: required from 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = double; htsFile = htsFile]' 3407 | return go_bam(fname_arg, argc, argv, op, bam_fh, nthreads, keep_order, has_annotation, afp, afpz, &annotations, &annotation_chrs_seen, prefix, sum_annotation, &chrm_order, auc_file, num_annotations, window_size = window_size); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3504:26: required from here 3504 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:1009:73: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' {aka 'long long int'} [-Wformat=] 1009 | window_bytes_written = sprintf(wbuf, "%s\t%u\t%u\t%ld\n", chrm, window_start, i, wsum); | ~~^ ~~~~ | | | | long int int64_t {aka long long int} | %lld /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:1052:70: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' {aka 'long long int'} [-Wformat=] 1052 | window_bytes_written = sprintf(wbuf, "%s\t%u\t%lu\t%ld\n", chrm, window_start, arr_sz, wsum); | ~~^ ~~~~ | | | | long int int64_t {aka long long int} | %lld /build/reproducible-path/megadepth-1.2.0/megadepth.cpp: In instantiation of 'uint64_t print_array(const char*, char*, int32_t, const T2*, long int, bool, bigWigFile_t*, FILE*, bool, bool, BGZF*, hts_idx_t*, int*, FILE*, BGZF*, int, Op) [with T2 = unsigned int; uint64_t = long long unsigned int; int32_t = int; FILE = FILE; BGZF = BGZF; hts_idx_t = hts_idx_t]': /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:2834:65: required from 'int go_bam(const char*, int, const char**, Op, htsFile*, int, bool, bool, FILE*, BGZF*, annotation_map_t*, chr2bool*, const char*, bool, strlist*, FILE*, uint64_t, uint32_t) [with T = double; htsFile = htsFile; FILE = FILE; BGZF = BGZF; annotation_map_t = robin_hood::detail::Table, std::vector >, robin_hood::hash >, std::equal_to > >; chr2bool = robin_hood::detail::Table, void, robin_hood::hash >, std::equal_to > >; strlist = std::vector; uint64_t = long long unsigned int; uint32_t = unsigned int]' 2834 | all_auc += print_array(cov_prefix, hdr->target_name[ptid], ptid, coverages.get(), chr_size, false, bwfp, cov_fh, dont_output_coverage, no_region, gcov_fh, cidx, chrms_in_cidx, afp, afpz, window_size, op); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3407:22: required from 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = double; htsFile = htsFile]' 3407 | return go_bam(fname_arg, argc, argv, op, bam_fh, nthreads, keep_order, has_annotation, afp, afpz, &annotations, &annotation_chrs_seen, prefix, sum_annotation, &chrm_order, auc_file, num_annotations, window_size = window_size); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:3504:26: required from here 3504 | return go(fname_arg, argc, argv, op, bam_fh, is_bam); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:1009:73: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' {aka 'long long int'} [-Wformat=] 1009 | window_bytes_written = sprintf(wbuf, "%s\t%u\t%u\t%ld\n", chrm, window_start, i, wsum); | ~~^ ~~~~ | | | | long int int64_t {aka long long int} | %lld /build/reproducible-path/megadepth-1.2.0/megadepth.cpp:1052:70: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' {aka 'long long int'} [-Wformat=] 1052 | window_bytes_written = sprintf(wbuf, "%s\t%u\t%lu\t%ld\n", chrm, window_start, arr_sz, wsum); | ~~^ ~~~~ | | | | long int int64_t {aka long long int} | %lld [100%] Linking CXX executable megadepth_dynamic /usr/bin/cmake -E cmake_link_script CMakeFiles/megadepth_dynamic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megadepth-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -DMEGADEPTH_VERSION="\"`cat ../VERSION`\"" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o -o megadepth_dynamic -lhts -lBigWig -lcurl -ldeflate -lz make[3]: Leaving directory '/build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu' [100%] Built target megadepth_dynamic make[2]: Leaving directory '/build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/megadepth-1.2.0/obj-i686-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/megadepth-1.2.0' dh_auto_install mkdir -p debian/megadepth/usr/bin cp obj-*/megadepth_dynamic debian/megadepth/usr/bin/megadepth make[1]: Leaving directory '/build/reproducible-path/megadepth-1.2.0' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/megadepth-1.2.0' dh_installman make[1]: Leaving directory '/build/reproducible-path/megadepth-1.2.0' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'megadepth-dbgsym' in '../megadepth-dbgsym_1.2.0-4_i386.deb'. dpkg-deb: building package 'megadepth' in '../megadepth_1.2.0-4_i386.deb'. dpkg-genbuildinfo --build=binary -O../megadepth_1.2.0-4_i386.buildinfo dpkg-genchanges --build=binary -O../megadepth_1.2.0-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15773 and its subdirectories I: Current time: Sun Sep 1 11:47:04 -12 2024 I: pbuilder-time-stamp: 1725234424