I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 23 20:32:13 +14 2026 I: pbuilder-time-stamp: 1769149933 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [infernal_1.1.5-3.dsc] I: copying [./infernal_1.1.5.orig.tar.gz] I: copying [./infernal_1.1.5-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 17 18:04:28 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./infernal_1.1.5-3.dsc: no acceptable signature found dpkg-source: info: extracting infernal in infernal-1.1.5 dpkg-source: info: unpacking infernal_1.1.5.orig.tar.gz dpkg-source: info: unpacking infernal_1.1.5-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening dpkg-source: info: applying reproducible_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18458/tmp/hooks/D01_modify_environment starting debug: Running on infom08-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 23 06:32 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/18458/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/18458/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=48e9883ac6e6434ab19e2858f2ec4389 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=18458 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xb33dBDd/pbuilderrc_560h --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xb33dBDd/b2 --logfile b2/build.log infernal_1.1.5-3.dsc' SUDO_GID=111 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/18458/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libperl4-corelibs-perl, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19946 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libperl4-corelibs-perl; however: Package libperl4-corelibs-perl is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libperl4-corelibs-perl{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 52 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 104 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.8-3 [816 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.8-3 [2239 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2~rc1-2 [24.0 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 12 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.8-3 [1968 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.8-3 [677 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-6 [1198 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-12 [95.9 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libperl4-corelibs-perl all 0.005-1 [39.0 kB] Fetched 27.4 MB in 1s (18.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19946 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.8-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_i386.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:i386 (3.12.8-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20266 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_i386.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_i386.deb ... Unpacking libcom-err2:i386 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-3_i386.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21329 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_i386.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-6_i386.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-12_i386.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... 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Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libperl4-corelibs-perl (0.005-1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jan 23 06:32:42 UTC 2026. Universal Time is now: Fri Jan 23 06:32:42 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... 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Setting up libpython3.12-stdlib:i386 (3.12.8-3) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/18458/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/18458/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/infernal-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../infernal_1.1.5-3_source.changes dpkg-buildpackage: info: source package infernal dpkg-buildpackage: info: source version 1.1.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' if [ -r Makefile ]; then /usr/bin/make distclean; fi cd documentation/userguide && if [ -r Makefile ]; then make distclean; fi cd easel/documentation && if [ -r Makefile ]; then make distclean; fi dh_clean *.1 */*.log *.log */Makefile Makefile documentation/manpages/*.1 rm -f testsuite/i49.tbl make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' dh_auto_configure -a ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: Configuring Infernal for your system. checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for strip... strip checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking for egrep -e... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our NEON code... no checking whether gcc can compile our Altivec/VMX code... no checking whether gcc can compile our SSE code... yes configure: Activating Intel/AMD SSE vector DP implementation checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes checking compiler support --start-group... yes checking for gzip... /usr/bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for netinet/in.h... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for declarations of fseeko and ftello... yes checking for gcc option to enable large file support... -D_FILE_OFFSET_BITS=64 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating rmark/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating src/impl_sse/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/cmalign.man config.status: creating documentation/man/cmbuild.man config.status: creating documentation/man/cmcalibrate.man config.status: creating documentation/man/cmconvert.man config.status: creating documentation/man/cmemit.man config.status: creating documentation/man/cmfetch.man config.status: creating documentation/man/cmpress.man config.status: creating documentation/man/cmscan.man config.status: creating documentation/man/cmsearch.man config.status: creating documentation/man/cmsearch_dual.man config.status: creating documentation/man/cmstat.man config.status: creating documentation/man/infernal.man config.status: creating documentation/man/sse_cmsearch.man config.status: creating hmmer/Makefile config.status: creating hmmer/src/Makefile config.status: creating hmmer/testsuite/Makefile config.status: creating hmmer/profmark/Makefile config.status: creating hmmer/src/impl_sse/Makefile config.status: creating hmmer/documentation/Makefile config.status: creating hmmer/documentation/man/Makefile config.status: creating hmmer/documentation/userguide/Makefile config.status: creating hmmer/documentation/userguide/inclusions/Makefile config.status: creating hmmer/libdivsufsort/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating hmmer/documentation/userguide/titlepage.tex config.status: creating hmmer/documentation/userguide/titlepage_daemon.tex config.status: creating hmmer/documentation/userguide/copyright.tex config.status: creating hmmer/documentation/man/alimask.man config.status: creating hmmer/documentation/man/hmmalign.man config.status: creating hmmer/documentation/man/hmmbuild.man config.status: creating hmmer/documentation/man/hmmc2.man config.status: creating hmmer/documentation/man/hmmconvert.man config.status: creating hmmer/documentation/man/hmmemit.man config.status: creating hmmer/documentation/man/hmmer.man config.status: creating hmmer/documentation/man/hmmfetch.man config.status: creating hmmer/documentation/man/hmmlogo.man config.status: creating hmmer/documentation/man/hmmpgmd.man config.status: creating hmmer/documentation/man/hmmpgmd_shard.man config.status: creating hmmer/documentation/man/hmmpress.man config.status: creating hmmer/documentation/man/hmmscan.man config.status: creating hmmer/documentation/man/hmmsearch.man config.status: creating hmmer/documentation/man/hmmsim.man config.status: creating hmmer/documentation/man/hmmstat.man config.status: creating hmmer/documentation/man/jackhmmer.man config.status: creating hmmer/documentation/man/makehmmerdb.man config.status: creating hmmer/documentation/man/nhmmer.man config.status: creating hmmer/documentation/man/nhmmscan.man config.status: creating hmmer/documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/config.h config.status: creating hmmer/src/p7_config.h config.status: creating easel/esl_config.h config.status: creating hmmer/libdivsufsort/divsufsort.h INFERNAL configuration: compiler: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread host: i686-pc-linux-gnu linker: -Wl,-z,relro -Wl,-z,now libraries: -lpthread DP implementation: sse Now do 'make' to build INFERNAL, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages. '(cd hmmer; make install)' to install HMMER tools. '(cd easel; make install)' to install Easel tools. make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' dh_auto_build -a -- V=1 make -j5 V=1 make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5' make -C easel all make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c easel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_alloc.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_alphabet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_arr2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_arr3.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_bitfield.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_buffer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_cluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_composition.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_cpu.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_dirichlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_distance.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_dmatrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_dsqdata.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_exponential.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_fileparser.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_gamma.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_gencode.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_getopts.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_gev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_graph.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_gumbel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_heap.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_histogram.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_hmm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_huffman.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_hyperexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_iset.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_json.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_keyhash.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_lognormal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_matrixops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_mem.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_minimizer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_mixdchlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_mixgev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_mpi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msacluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_a2m.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_afa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_clustal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_phylip.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_psiblast.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_selex.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_stockholm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msashuffle.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msaweight.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_normal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_paml.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_quicksort.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_random.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_rand64.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_randomseq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_ratematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_recorder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_red_black.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_regexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_rootfinder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_scorematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sqio.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sqio_ascii.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sqio_ncbi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_ssi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_stack.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_stats.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_stopwatch.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_stretchexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_subcmd.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_threads.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_tree.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_varint.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_vectorops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_weibull.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_workqueue.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_wuss.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sse.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_avx.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_avx512.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_neon.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_vmx.c /usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_iset.o esl_json.o esl_keyhash.o esl_lognormal.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1 make -C miniapps all make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel/miniapps' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lpthread -lm gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -c cmd_alistat.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -c cmd_downsample.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -c cmd_filter.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -c cmd_index.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lpthread -lm make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel' make -C hmmer/libdivsufsort all make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/libdivsufsort' gcc -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -o divsufsort.o -c divsufsort.c /usr/bin/ar rc libdivsufsort.a divsufsort.o make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/libdivsufsort' make -C hmmer all make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer' make -C ../easel all make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' make -C miniapps all make[5]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel/miniapps' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel/miniapps' make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel' make -C libdivsufsort all make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/libdivsufsort' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/libdivsufsort' make -C src all make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/src' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o alimask.o -c alimask.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o build.o -c build.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o cachedb.o -c cachedb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o cachedb_shard.o -c cachedb_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o emit.o -c emit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o errors.o -c errors.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o evalues.o -c evalues.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o eweight.o -c eweight.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_null2.o -c generic_null2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_msv.o -c generic_msv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o h2_io.o -c h2_io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o heatmap.o -c heatmap.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmdmstr_shard.o -c hmmdmstr_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmd_search_status.o -c hmmd_search_status.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmer.o -c hmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o logsum.o -c logsum.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o modelconfig.o -c modelconfig.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o modelstats.o -c modelstats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o mpisupport.o -c mpisupport.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o seqmodel.o -c seqmodel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o tracealign.o -c tracealign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_bg.o -c p7_bg.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_builder.o -c p7_builder.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_domain.o -c p7_domain.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hit.o -c p7_hit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_prior.o -c p7_prior.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_profile.o -c p7_profile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_trace.o -c p7_trace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_general.o -c fm_general.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_sse.o -c fm_sse.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_ssv.o -c fm_ssv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmalign.o -c hmmalign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmemit.o -c hmmemit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmpgmd_shard.o -c hmmpgmd_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmpress.o -c hmmpress.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmscan.o -c hmmscan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmsim.o -c hmmsim.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmstat.o -c hmmstat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o phmmer.o -c phmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o nhmmer.o -c nhmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmc2.o -c hmmc2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c /usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_sse libhmmer-impl.stamp make[5]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/src/impl_sse' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o io.o -c io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[5]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/src/impl_sse' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lpthread -lm make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/src' make -C profmark all make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/profmark' gcc -I../../easel -I../../easel -I../src -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -I../../easel -I../../easel -I../src -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lpthread -lm make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/profmark' make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer' make -C src all make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/src' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmalign.o -c cmalign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm.o -c cm.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_alidisplay.o -c cm_alidisplay.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_alndata.o -c cm_alndata.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpalign.o -c cm_dpalign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpalign_trunc.o -c cm_dpalign_trunc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpsearch.o -c cm_dpsearch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpsearch_trunc.o -c cm_dpsearch_trunc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpsmall.o -c cm_dpsmall.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_file.o -c cm_file.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_modelconfig.o -c cm_modelconfig.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_modelmaker.o -c cm_modelmaker.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_mx.o -c cm_mx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_parsetree.o -c cm_parsetree.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_pipeline.o -c cm_pipeline.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_qdband.o -c cm_qdband.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_submodel.o -c cm_submodel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_tophits.o -c cm_tophits.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_trunc.o -c cm_trunc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_band.o -c cm_p7_band.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_domaindef.o -c cm_p7_domaindef.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_modelconfig_trunc.o -c cm_p7_modelconfig_trunc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_modelmaker.o -c cm_p7_modelmaker.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9.o -c cp9.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_dp.o -c cp9_dp.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_modelmaker.o -c cp9_modelmaker.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_mx.o -c cp9_mx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_trace.o -c cp9_trace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o alphabet.o -c alphabet.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o display.o -c display.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o errors.o -c errors.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o hmmband.o -c hmmband.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o prior.o -c prior.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o rnamat.o -c rnamat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o stats.o -c stats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o truncyk.o -c truncyk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmbuild.o -c cmbuild.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmcalibrate.o -c cmcalibrate.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmconvert.o -c cmconvert.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmemit.o -c cmemit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmfetch.o -c cmfetch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmpress.o -c cmpress.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmscan.o -c cmscan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmsearch.o -c cmsearch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmstat.o -c cmstat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o trcyk.o -c trcyk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o bandcyk-montecarlo-test.o -c bandcyk-montecarlo-test.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o bandcyk-truncation-test.o -c bandcyk-truncation-test.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9-test.o -c cp9-test.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o sub_cm-test.o -c sub_cm-test.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o truncyk_check.o -c truncyk_check.c /usr/bin/ar -r libinfernal.a cm.o cm_alidisplay.o cm_alndata.o cm_dpalign.o cm_dpalign_trunc.o cm_dpsearch.o cm_dpsearch_trunc.o cm_dpsmall.o cm_file.o cm_modelconfig.o cm_modelmaker.o cm_mx.o cm_parsetree.o cm_pipeline.o cm_qdband.o cm_submodel.o cm_tophits.o cm_trunc.o cm_p7_band.o cm_p7_domaindef.o cm_p7_modelconfig_trunc.o cm_p7_modelmaker.o cp9.o cp9_dp.o cp9_modelmaker.o cp9_mx.o cp9_trace.o alphabet.o display.o errors.o eweight.o hmmband.o logsum.o mpisupport.o prior.o rnamat.o stats.o truncyk.o > /dev/null 2>&1 make -C impl_sse libinfernal-impl.stamp make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/src/impl_sse' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o cm_optimized.o -c cm_optimized.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cm_dpsearch.o -c sse_cm_dpsearch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cm_dpsmall.o -c sse_cm_dpsmall.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmcons_hitmx.o -c sse_cmcons_hitmx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmcons_mscyk.o -c sse_cmcons_mscyk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_util.o -c sse_util.c /usr/bin/ar -r ../libinfernal.a cm_optimized.o sse_cm_dpsearch.o sse_cm_dpsmall.o sse_cmcons_hitmx.o sse_cmcons_mscyk.o sse_util.o > /dev/null 2>&1 make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/src/impl_sse' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmalign cmalign.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmbuild cmbuild.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmcalibrate cmcalibrate.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmconvert cmconvert.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmemit cmemit.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmfetch cmfetch.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmpress cmpress.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmscan cmscan.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmsearch cmsearch.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmstat cmstat.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o trcyk trcyk.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o bandcyk-montecarlo-test bandcyk-montecarlo-test.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o bandcyk-truncation-test bandcyk-truncation-test.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cp9-test cp9-test.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o sub_cm-test sub_cm-test.o -linfernal -lhmmer -leasel -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o truncyk_check truncyk_check.o -linfernal -lhmmer -leasel -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/src' make -C rmark all make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/rmark' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I../src -I../src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -o rmark-create.o -c rmark-create.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I../src -I../src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -o rmark-rocplot.o -c rmark-rocplot.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../hmmer/src -L../easel -L../src -o rmark-rocplot rmark-rocplot.o -lhmmer -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../hmmer/src -L../easel -L../src -o rmark-create rmark-create.o -lhmmer -leasel -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/rmark' make -C src/impl_sse all make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/src/impl_sse' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmsearch.o -c sse_cmsearch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L../../hmmer/src -L.. -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmsearch sse_cmsearch.o -linfernal -lhmmer -leasel -lm make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/src/impl_sse' make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5' make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' dh_auto_test make -j5 check "TESTSUITEFLAGS=-j5 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' SUBDIR easel make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' GEN easel_utest GEN esl_alloc_utest GEN esl_bitfield_utest GEN esl_alphabet_utest GEN esl_buffer_utest GEN esl_cluster_utest GEN esl_cpu_utest GEN esl_dirichlet_utest GEN esl_distance_utest GEN esl_dmatrix_utest GEN esl_dsqdata_utest GEN esl_exponential_utest GEN esl_fileparser_utest GEN esl_gamma_utest GEN esl_gencode_utest GEN esl_getopts_utest GEN esl_graph_utest GEN esl_gumbel_utest GEN esl_heap_utest GEN esl_histogram_utest GEN esl_hmm_utest GEN esl_huffman_utest GEN esl_hyperexp_utest GEN esl_iset_utest GEN esl_json_utest GEN esl_keyhash_utest GEN esl_lognormal_utest GEN esl_matrixops_utest GEN esl_mem_utest GEN esl_minimizer_utest GEN esl_mixdchlet_utest GEN esl_msa_utest GEN esl_msacluster_utest GEN esl_msafile_utest GEN esl_msafile2_utest GEN esl_msafile_a2m_utest GEN esl_msafile_afa_utest GEN esl_msafile_clustal_utest GEN esl_msafile_phylip_utest GEN esl_msafile_psiblast_utest GEN esl_msafile_selex_utest GEN esl_msafile_stockholm_utest GEN esl_msaweight_utest GEN esl_normal_utest GEN esl_quicksort_utest GEN esl_random_utest GEN esl_rand64_utest GEN esl_randomseq_utest GEN esl_ratematrix_utest GEN esl_red_black_utest GEN esl_recorder_utest GEN esl_regexp_utest GEN esl_rootfinder_utest GEN esl_scorematrix_utest GEN esl_sq_utest GEN esl_sqio_utest GEN esl_ssi_utest GEN esl_stack_utest GEN esl_stats_utest GEN esl_stretchexp_utest GEN esl_tree_utest GEN esl_varint_utest GEN esl_vectorops_utest GEN esl_weibull_utest GEN esl_wuss_utest GEN esl_sse_utest GEN esl_avx_utest GEN esl_avx512_utest GEN esl_neon_utest GEN esl_vmx_utest SUBDIR miniapps make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel' SUBDIR hmmer/libdivsufsort make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/libdivsufsort' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/libdivsufsort' SUBDIR hmmer make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer' SUBDIR ../easel make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' SUBDIR miniapps make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel' SUBDIR src make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/src' SUBDIR impl_sse CC itest_brute.o GEN build_utest GEN generic_fwdback_utest GEN generic_msv_utest GEN generic_fwdback_chk_utest GEN generic_stotrace_utest GEN generic_viterbi_utest GEN hmmer_utest GEN logsum_utest GEN modelconfig_utest GEN seqmodel_utest GEN p7_alidisplay_utest GEN p7_bg_utest GEN p7_domain_utest GEN p7_gmx_utest GEN p7_gmxchk_utest GEN p7_hit_utest GEN p7_hmmd_search_stats_utest GEN p7_hmm_utest GEN p7_hmmfile_utest GEN p7_profile_utest GEN p7_tophits_utest GEN p7_trace_utest GEN p7_scoredata_utest GEN hmmpgmd2msa_utest GEN hmmd_search_status_utest GEN itest_brute SUBDIR impl_sse make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/src/impl_sse' GEN io_utest GEN decoding_utest GEN null2_utest GEN msvfilter_utest GEN fwdback_utest GEN optacc_utest GEN stotrace_utest GEN vitfilter_utest make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/src/impl_sse' make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/src' make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer' SUBDIR src make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/src' SUBDIR impl_sse CC itest_brute.o make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/src/impl_sse' make[3]: 'libinfernal-impl.stamp' is up to date. make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/src/impl_sse' GEN cm_tophits_utest GEN itest_brute SUBDIR impl_sse make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/src/impl_sse' make[3]: Nothing to be done for 'tests'. make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/src/impl_sse' make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/src' SUBDIR easel make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' SUBDIR miniapps SUBDIR testsuite make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel/testsuite' Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ iset-utest] ... ok. exercise 26 [ json-utest] ... ok. exercise 27 [ keyhash-utest] ... ok. exercise 28 [ lognormal-utest] ... ok. exercise 29 [ matrixops-utest] ... ok. exercise 30 [ mem-utest] ... ok. exercise 31 [ minimizer-utest] ... ok. exercise 32 [ mixdchlet-utest] ... ok. exercise 33 [ msa-utest] ... ok. exercise 34 [ msacluster-utest] ... ok. exercise 35 [ msafile] ... ok. exercise 36 [ msafile2] ... ok. exercise 37 [ msafile-a2m] ... ok. exercise 38 [ msafile-afa] ... ok. exercise 39 [ msafile-clustal] ... ok. exercise 40 [ msafile-phylip] ... ok. exercise 41 [ msafile-psiblast] ... ok. exercise 42 [ msafile-selex] ... ok. exercise 43 [ msafile-stockholm] ... ok. exercise 44 [ msaweight-utest] ... ok. exercise 45 [ neon-utest] ... ok. exercise 46 [ normal-utest] ... ok. exercise 47 [ quicksort-utest] ... ok. exercise 48 [ random-utest] ... ok. exercise 49 [ rand64-utest] ... ok. exercise 50 [ randomseq-utest] ... ok. exercise 51 [ ratematrix-utest] ... ok. exercise 52 [ recorder-utest] ... ok. exercise 53 [ red_black-utest] ... ok. exercise 54 [ regexp-utest] ... ok. exercise 55 [ rootfinder-utest] ... ok. exercise 56 [ scorematrix-utest] ... ok. exercise 57 [ sq-utest] ... ok. exercise 58 [ sqio-utest] ... ok. exercise 59 [ sse-utest] ... ok. exercise 60 [ ssi-utest] ... ok. exercise 61 [ stack-utest] ... ok. exercise 62 [ stats-utest] ... ok. exercise 63 [ stretchexp-utest] ... ok. exercise 64 [ tree-utest] ... ok. exercise 65 [ varint-utest] ... ok. exercise 66 [ vectorops-utest] ... ok. exercise 67 [ vmx-utest] ... ok. exercise 68 [ weibull-utest] ... ok. exercise 69 [ wuss-utest] ... ok. exercise 70 [ e2] ... ok. exercise 71 [ degen-residues] ... ok. exercise 72 [ ncbi-indices] ... ok. exercise 73 [ blank-gf] ... ok. exercise 74 [ sindi] ... ok. exercise 75 [ esl-translate] ... ok. exercise 76 [ esl-afetch] ... ok. exercise 77 [ esl-alimanip] ... ok. exercise 78 [ esl-alimap] ... ok. exercise 79 [ esl-alimask] ... ok. exercise 80 [ esl-alimerge] ... ok. exercise 81 [ esl-alistat] ... ok. exercise 82 [ esl-compalign] ... ok. exercise 83 [ esl-construct] ... ok. exercise 84 [ esl-mask] ... ok. exercise 85 [ esl-seqrange] ... ok. exercise 86 [ esl-shuffle] ... ok. exercise 87 [ esl-ssdraw] ... ok. All 87 exercises at level <= 2 passed. System information: Fri Jan 23 20:34:16 +14 2026 Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel/testsuite' make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel' SUBDIR hmmer/testsuite make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Fri Jan 23 20:34:36 +14 2026 Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/testsuite' SUBDIR testsuite make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/testsuite' Running Infernal test suite... exercise 1 [ utest/cm_tophits] ... ok. exercise 2 [ itest/mapali] ... ok. exercise 3 [ itest/dup-names] ... ok. exercise 4 [ itest/msa-integrity] ... ok. exercise 5 [ itest/stdin-pipes] ... ok. exercise 6 [ itest/pipeline] ... ok. exercise 7 [ itest/sensitivity] ... ok. exercise 8 [ itest/trunc] ... ok. exercise 9 [ itest/scan-glist] ... ok. exercise 10 [ itest/scan-overlaps] ... ok. exercise 11 [ itest/build-frags] ... ok. exercise 12 [ itest/search-frags] ... ok. exercise 13 [ itest/brute] ... ok. exercise 14 [ bug/i1-vault-sscons] ... ok. exercise 15 [ bug/i2-cmalign-leak] ... ok. exercise 16 [ bug/i11-bld-detach] ... ok. exercise 17 [ bug/i12-aln-outside] ... ok. exercise 18 [ bug/i13-aln-sub] ... ok. exercise 19 [ bug/i14-aln-oa-zero] ... ok. exercise 20 [ bug/i15-aln-bif-imp] ... ok. exercise 21 [ bug/i28-srch-bndcln] ... ok. exercise 22 [ bug/i29-cnv-1p0-nft] ... ok. exercise 23 [ bug/i30-srch-zeroln] ... ok. exercise 24 [ bug/i31-neg-dbsize] ... ok. exercise 25 [ bug/i32-refine-ss] ... ok. exercise 26 [ bug/i33-cmsearch-A] ... ok. exercise 27 [ bug/i34-cmalign-EL] ... ok. exercise 28 [ bug/i36-hbanded-tb] ... ok. exercise 29 [ bug/i37-bandshift] ... ok. exercise 30 [ bug/i38-mapali-noss] ... ok. exercise 31 [ bug/i39-build-O-0bp] ... ok. exercise 32 [ bug/i43-oa-loc-beg] ... ok. exercise 33 [ bug/i44-mapstr] ... ok. exercise 34 [bug/i45-alidisplay-EL] ... ok. exercise 35 [ bug/i47-cmbuild-p7ml] ... ok. exercise 36 [ bug/i49-hmmonly-ovlp] ... ok. exercise 37 [ iss21-cmbuild-rf-pb] ... ok. exercise 38 [ iss33-trunc-pipeline] ... ok. exercise 39 [iss34-bld-frg-slf-ins] ... ok. exercise 40 [ build/help/1] ... ok. exercise 41 [ build/help/2] ... ok. exercise 42 [ build/t] ... ok. exercise 43 [ build/v/o] ... ok. exercise 44 [ build/s/O] ... ok. exercise 45 [ build/zbp/O] ... ok. exercise 46 [ build/4/O] ... ok. exercise 47 [ search/help/1] ... ok. exercise 48 [ search/help/2] ... ok. exercise 49 [ search/t] ... ok. exercise 50 [ search/v] ... ok. exercise 51 [ search/s] ... ok. exercise 52 [ search/4] ... ok. exercise 53 [ search/4F3] ... ok. exercise 54 [ search/4f] ... ok. exercise 55 [ search/zbp] ... ok. exercise 56 [ search/t/A] ... ok. exercise 57 [ search/4/A] ... ok. exercise 58 [ search/zbp/A] ... ok. exercise 59 [ stat/help/1] ... ok. exercise 60 [ stat/t] ... ok. exercise 61 [ stat/v] ... ok. exercise 62 [ stat/s] ... ok. exercise 63 [ stat/z] ... ok. exercise 64 [ stat/tC] ... ok. exercise 65 [ stat/vC] ... ok. exercise 66 [ stat/sC] ... ok. exercise 67 [ stat/zC] ... ok. exercise 68 [ press/tC] ... ok. exercise 69 [ press/vC] ... ok. exercise 70 [ press/sC] ... ok. exercise 71 [ press/zC] ... ok. exercise 72 [ press/4C] ... ok. exercise 73 [ press/5C] ... ok. exercise 74 [ press/se] ... ok. exercise 75 [ scan/help/1] ... ok. exercise 76 [ scan/help/2] ... ok. exercise 77 [ scan/tC] ... ok. exercise 78 [ scan/vC] ... ok. exercise 79 [ scan/sC] ... ok. exercise 80 [ scan/zC] ... ok. exercise 81 [ scan/4C] ... ok. exercise 82 [ scan/5C] ... ok. exercise 83 [ scan/5C3] ... ok. exercise 84 [ scan/5CF3] ... ok. exercise 85 [ scan/se] ... ok. exercise 86 [ scan/seF3] ... ok. exercise 87 [ emit/help/1] ... ok. exercise 88 [ emit/t] ... ok. exercise 89 [ emit/v] ... ok. exercise 90 [ emit/s] ... ok. exercise 91 [ emit/4] ... ok. exercise 92 [ emit/z] ... ok. exercise 93 [ emit/tC] ... ok. exercise 94 [ emit/vC] ... ok. exercise 95 [ emit/sC] ... ok. exercise 96 [ emit/4C] ... ok. exercise 97 [ emit/zC] ... ok. exercise 98 [ convert/help/1] ... ok. exercise 99 [ convert/t] ... ok. exercise 100 [ convert/v] ... ok. exercise 101 [ convert/s] ... ok. exercise 102 [ convert/4] ... ok. exercise 103 [ convert-emit/t] ... ok. exercise 104 [ convert-emit/v] ... ok. exercise 105 [ convert-emit/s] ... ok. exercise 106 [ convert-emit/4] ... ok. exercise 107 [ convert/t/b] ... ok. exercise 108 [ convert/v/b] ... ok. exercise 109 [ convert/s/b] ... ok. exercise 110 [ convert/4/b] ... ok. exercise 111 [ convert-emit/t/b] ... ok. exercise 112 [ convert-emit/v/b] ... ok. exercise 113 [ convert-emit/s/b] ... ok. exercise 114 [ convert-emit/4/b] ... ok. exercise 115 [ convert/t/1] ... ok. exercise 116 [ convert/v/1] ... ok. exercise 117 [ convert/s/1] ... ok. exercise 118 [ convert/4/1] ... ok. exercise 119 [ convert/t/1back] ... ok. exercise 120 [ convert/v/1back] ... ok. exercise 121 [ convert/s/1back] ... ok. exercise 122 [ convert/4/1back] ... ok. exercise 123 [ convert-emit/t/b] ... ok. exercise 124 [ convert-emit/v/b] ... ok. exercise 125 [ convert-emit/s/b] ... ok. exercise 126 [ convert-emit/4/b] ... ok. exercise 127 [ convertC/t] ... ok. exercise 128 [ convertC/v] ... ok. exercise 129 [ convertC/s] ... ok. exercise 130 [ convertC/4] ... ok. exercise 131 [ convertC-emit/t] ... ok. exercise 132 [ convertC-emit/v] ... ok. exercise 133 [ convertC-emit/s] ... ok. exercise 134 [ convertC-emit/4] ... ok. exercise 135 [ align/help/1] ... ok. exercise 136 [ align/t/1] ... ok. exercise 137 [ align/t/2] ... ok. exercise 138 [ calibrate/help/1] ... ok. exercise 139 [ calibrate/tFC] ... ok. exercise 140 [ calibrate/se] ... ok. exercise 141 [ calib/split/se] ... ok. exercise 142 [ calib/part1/se] ... ok. exercise 143 [ calib/part2/se] ... ok. exercise 144 [ calib/part3/se] ... ok. exercise 145 [ calib/part4/se] ... ok. exercise 146 [ calib/part5/se] ... ok. exercise 147 [ calib/part6/se] ... ok. exercise 148 [ calib/part7/se] ... ok. exercise 149 [ calib/part8/se] ... ok. exercise 150 [ calib/part9/se] ... ok. exercise 151 [ calib/part10/se] ... ok. exercise 152 [ calib/merge/se] ... ok. exercise 153 [ fetch/4/index] ... ok. exercise 154 [ fetch/4/f] ... ok. exercise 155 [ fetch/4/o] ... ok. exercise 156 [ fetch/4/O] ... ok. exercise 157 [ emit/4/O] ... ok. exercise 158 [ fetch/4C/index] ... ok. exercise 159 [ fetch/4C/f] ... ok. exercise 160 [ fetch/4C/o] ... ok. exercise 161 [ fetch/4C/O] ... ok. exercise 162 [ emit/4C/O] ... ok. exercise 163 [ bandcykmc/trna] ... ok. exercise 164 [ bandcyktrunc/trna] ... ok. exercise 165 [ cp9/trna/1] ... ok. exercise 166 [ cp9/trna/2] ... ok. exercise 167 [ cp9/rp] ... ok. exercise 168 [ sub/trna1] ... ok. exercise 169 [ sub/rp] ... ok. exercise 170 [ sub/trna2] ... ok. All 170 exercises at level <= 1 passed. System information: Fri Jan 23 20:42:52 +14 2026 Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/testsuite' make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' /usr/bin/make install -j8 AM_UPDATE_INFO_DIR=no V=1 prefix=/build/reproducible-path/infernal-1.1.5/debian/tmp make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5' /usr/bin/install -c -d /build/reproducible-path/infernal-1.1.5/debian/tmp/bin /usr/bin/install -c -d /build/reproducible-path/infernal-1.1.5/debian/tmp/share/man/man1 /usr/bin/install -c -d /build/reproducible-path/infernal-1.1.5/debian/tmp/share/doc/infernal /usr/bin/make -C src install make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/src' for file in cmalign cmbuild cmcalibrate cmconvert cmemit cmfetch cmpress cmscan cmsearch cmstat; do \ /usr/bin/install -c -m 0755 $file /build/reproducible-path/infernal-1.1.5/debian/tmp/bin/ ;\ done make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/src' /usr/bin/make -C documentation install make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/documentation' /usr/bin/make -C man install make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/documentation/man' for file in infernal cmalign cmbuild cmcalibrate cmconvert cmemit cmfetch cmpress cmsearch cmscan cmstat; do \ /usr/bin/install -c -m 0664 $file.man /build/reproducible-path/infernal-1.1.5/debian/tmp/share/man/man1/${file}.1 ;\ done make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/documentation/man' make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/documentation' make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5' make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' echo "Nothing to do for architecture all binary packages" Nothing to do for architecture all binary packages make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' dh_install -a for bin in `ls /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/lib/infernal` ; do \ if [ $bin != cmalign ] ; then \ ln -s cmalign /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/bin/$bin ; \ fi ; \ done make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' dh_install -Ninfernal dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' dh_installexamples -a mkdir -p /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/share/doc/infernal/examples mkdir -p /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/src/ mkdir -p /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/easel/miniapps/ find ./src -name "*test" -exec cp \{\} /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/src/ \; cp ./src/itest_brute /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/src/ cp ./easel/miniapps/esl-reformat /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/easel/miniapps/ cp ./easel/miniapps/esl-shuffle /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/easel/miniapps/ cp ./easel/miniapps/esl-sfetch /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/easel/miniapps/ cd /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/share/doc/infernal/examples && ln -s ../../../../lib/i386-linux-gnu/infernal/examples/easel ./easel \ && ln -s ../../../../lib/i386-linux-gnu/infernal/examples/src ./src cp -aR testsuite /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/share/doc/infernal/examples/ rm -f /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/share/doc/infernal/examples/testsuite/*.tbl cp ./easel/devkit/sqc /build/reproducible-path/infernal-1.1.5/debian/infernal/usr/share/doc/infernal/examples/ make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' dh_compress -X.pdf make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'infernal-dbgsym' in '../infernal-dbgsym_1.1.5-3_i386.deb'. dpkg-deb: building package 'infernal-doc' in '../infernal-doc_1.1.5-3_all.deb'. dpkg-deb: building package 'infernal' in '../infernal_1.1.5-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../infernal_1.1.5-3_i386.buildinfo dpkg-genchanges --build=binary -O../infernal_1.1.5-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/18458/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/18458/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18458 and its subdirectories I: Current time: Fri Jan 23 20:43:23 +14 2026 I: pbuilder-time-stamp: 1769150603