I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 12 01:21:55 +14 2024 I: pbuilder-time-stamp: 1712834515 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [fermi-lite_0.1+git20190320.b499514-1.dsc] I: copying [./fermi-lite_0.1+git20190320.b499514.orig.tar.xz] I: copying [./fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jan 8 10:18:10 2021 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fermi-lite_0.1+git20190320.b499514-1.dsc: no acceptable signature found dpkg-source: info: extracting fermi-lite in fermi-lite-0.1+git20190320.b499514 dpkg-source: info: unpacking fermi-lite_0.1+git20190320.b499514.orig.tar.xz dpkg-source: info: unpacking fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying rename_bseq1_t.patch dpkg-source: info: applying bcf_seqlib.patch dpkg-source: info: applying simde dpkg-source: info: applying ensure-signed-comparison.patch dpkg-source: info: applying sync_instead_of_atomic dpkg-source: info: applying gcc10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/44826/tmp/hooks/D01_modify_environment starting debug: Running on ionos2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 11 11:22 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/44826/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/44826/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=b2492829dc594944b492362f76c77f73 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=44826 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cE7bKWbw/pbuilderrc_DgQd --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cE7bKWbw/b2 --logfile b2/build.log fermi-lite_0.1+git20190320.b499514-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 10 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/44826/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libsimde-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsimde-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 20.9 MB of archives. After unpacking 84.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-6+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 d-shlibs all 0.106 [10.9 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 25 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libsimde-dev all 0.8.0-1 [458 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3+b1 [915 kB] Fetched 20.9 MB in 0s (66.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-6+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../03-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.106_all.deb ... Unpacking d-shlibs (0.106) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../24-libelf1_0.190-1+b1_i386.deb ... Unpacking libelf1:i386 (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../26-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package help2man. Preparing to unpack .../32-help2man_1.49.3_i386.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../33-libsimde-dev_0.8.0-1_all.deb ... Unpacking libsimde-dev (0.8.0-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg-3+b1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg-3+b1) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libsimde-dev (0.8.0-1) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1:i386 (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up d-shlibs (0.106) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libelf1:i386 (0.190-1+b1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/44826/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/44826/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/fermi-lite-0.1+git20190320.b499514/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fermi-lite_0.1+git20190320.b499514-1_source.changes dpkg-buildpackage: info: source package fermi-lite dpkg-buildpackage: info: source version 0.1+git20190320.b499514-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_auto_clean make -j7 clean make[2]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' rm -fr gmon.out *.o ext/*.o a.out fml-asm *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' rm -f fml-asm.1 make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j7 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kthread.o kthread.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc.o misc.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bseq.o bseq.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htab.o htab.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bfc.o bfc.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rle.o rle.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rope.o rope.c misc.c: In function 'fml_utg_print': misc.c:217:19: warning: variable 'l' set but not used [-Wunused-but-set-variable] 217 | int i, j, l; | ^ bfc.c: In function 'bfc_kmer_insert': bfc.c:54:24: warning: variable 'hash' set but not used [-Wunused-but-set-variable] 54 | uint64_t y[2], hash; | ^~~~ cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mrope.o mrope.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rld0.o rld0.c rld0.c: In function 'rld_restore': rld0.c:298:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 298 | fread(e->z[i], 8, RLD_LSIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:299:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 299 | fread(e->z[i], 8, k, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:301:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 301 | fread(e->frame, 8 * e->asize1, e->n_frames, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c: In function 'rld_restore_header': rld0.c:256:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 256 | fread(magic, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~ rld0.c:258:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 258 | fread(&x, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~ rld0.c:260:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 260 | fread(a, 8, 3, fp); | ^~~~~~~~~~~~~~~~~~ rld0.c:262:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 262 | fread(e->mcnt + 1, 8, e->asize, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o unitig.o unitig.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mag.o mag.c unitig.c: In function 'unitig1': unitig.c:325:23: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 325 | int seed_len, ret, is_loop, contained; | ^~~ mag.c: In function 'mag_g_rm_vext': mag.c:418:52: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 418 | fprintf(stderr, "[M::%s] removed %ld tips (min_len=%d, min_nsr=%d)\n", __func__, a.n, min_len, min_nsr); | ~~^ ~~~ | | | | long int size_t {aka unsigned int} | %d mag.c: In function 'mag_g_rm_vint': mag.c:436:52: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 436 | fprintf(stderr, "[M::%s] removed %ld internal vertices (min_len=%d, min_nsr=%d)\n", __func__, a.n, min_len, min_nsr); | ~~^ ~~~ | | | | long int size_t {aka unsigned int} | %d cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bubble.o bubble.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksw.o ksw.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o example.o example.c ksw.c: In function 'ksw_u8': ksw.c:127:14: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 127 | zero = _mm_set1_epi32(0); | ^ ar -csru libfml.a kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o cc -Wl,-z,relro -Wl,-z,now -shared -o libfml.so.0 kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o -fPIC -Wl,-soname,libfml.so.0 -lm -lz -lpthread ar: `u' modifier ignored since `D' is the default (see `U') cc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC libfml.a example.o -o fml-asm -L. -lfml -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' ./fml-asm test/MT-simu.fq.gz > MT.fq test "$(wc -l < MT.fq)" = "4" make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' ln -s libfml.so.* libfml.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "fml.h" /usr/include/ \ --movedev "bfc.h" /usr/include/fml \ --movedev "htab.h" /usr/include/fml \ --movedev "kmer.h" /usr/include/fml \ --movedev "internal.h" /usr/include/fml \ --movedev "khash.h" /usr/include/fml \ --movedev "kvec.h" /usr/include/fml \ --movedev "ksort.h" /usr/include/fml \ libfml.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libfml-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libfml0/usr/lib/i386-linux-gnu mv ./libfml.a debian/libfml-dev/usr/lib/i386-linux-gnu mv ./libfml.la debian/libfml-dev/usr/lib/i386-linux-gnu || true mv ./libfml.so debian/libfml-dev/usr/lib/i386-linux-gnu mv /build/reproducible-path/fermi-lite-0.1+git20190320.b499514/libfml.so.0 debian/libfml0/usr/lib/i386-linux-gnu PKGDEV=libfml-dev PKGSHL=libfml0 install -d -m 755 debian/libfml-dev//usr/include/ mv fml.h debian/libfml-dev//usr/include/ install -d -m 755 debian/libfml-dev//usr/include/fml mv bfc.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv htab.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv kmer.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv internal.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv khash.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv kvec.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv ksort.h debian/libfml-dev//usr/include/fml mv: cannot stat './libfml.la': No such file or directory make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' help2man --version-string='0.1' \ -n 'assemble Illumina short reads in small regions' \ -N --no-discard-stderr -h '' ./fml-asm > fml-asm.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libfml0/DEBIAN/symbols doesn't match completely debian/libfml0.symbols --- debian/libfml0.symbols (libfml0_0.1+git20190320.b499514-1_i386) +++ dpkg-gensymbolsJbsmed 2024-04-11 11:22:44.173649650 +0000 @@ -18,6 +18,7 @@ fm6_get_nei@Base 0.1 fm6_is_contained@Base 0.1 fm6_retrieve@Base 0.1 + fm_verbose@Base 0.1+git20190320.b499514-1 fml_assemble@Base 0.1 fml_correct@Base 0.1 fml_correct_core@Base 0.1 @@ -36,6 +37,7 @@ fml_seq_read@Base 0.1 fml_utg_destroy@Base 0.1 fml_utg_print@Base 0.1 + fml_utg_print_gfa@Base 0.1+git20190320.b499514-1 g_defr@Base 0.1 g_trinull@Base 0.1 kh_clear_64@Base 0.1 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fml-asm' in '../fml-asm_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'fml-asm-dbgsym' in '../fml-asm-dbgsym_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'libfml0' in '../libfml0_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'libfml0-dbgsym' in '../libfml0-dbgsym_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'libfml-dev' in '../libfml-dev_0.1+git20190320.b499514-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../fermi-lite_0.1+git20190320.b499514-1_i386.buildinfo dpkg-genchanges --build=binary -O../fermi-lite_0.1+git20190320.b499514-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/44826/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/44826/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/44826 and its subdirectories I: Current time: Fri Apr 12 01:22:48 +14 2024 I: pbuilder-time-stamp: 1712834568