I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 16 21:52:48 +14 2025 I: pbuilder-time-stamp: 1765871568 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [fast5_0.6.5-8.dsc] I: copying [./fast5_0.6.5.orig.tar.gz] I: copying [./fast5_0.6.5-8.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Aug 21 15:10:31 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fast5_0.6.5-8.dsc: no acceptable signature found dpkg-source: info: extracting fast5 in fast5-0.6.5 dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz dpkg-source: info: unpacking fast5_0.6.5-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rpath.patch dpkg-source: info: applying gcc-12.patch dpkg-source: info: applying build-flags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19465/tmp/hooks/D01_modify_environment starting debug: Running on infom08-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 16 07:52 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/19465/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/19465/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=bcc7d4e2a03a4515a1f7f1a14d5b0895 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=19465 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QIOzWrpa/pbuilderrc_Ap81 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QIOzWrpa/b2 --logfile b2/build.log fast5_0.6.5-8.dsc' SUDO_GID=111 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/19465/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libicu72{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnsl2{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 70.5 MB of archives. After unpacking 387 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.3-2 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 12 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 comerr-dev i386 2.1-1.47.1-1+b1 [55.3 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 cython3 i386 3.0.11+dfsg-1 [2429 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 60 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.20.2-1 [10.3 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20241024 [109 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 hdf5-helpers i386 1.10.10+repack-4 [23.5 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libgssrpc4t64 i386 1.21.3-3 [63.1 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libkadm5clnt-mit12 i386 1.21.3-3 [43.2 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libkdb5-10t64 i386 1.21.3-3 [45.1 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libkadm5srv-mit12 i386 1.21.3-3 [57.0 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 krb5-multidev i386 1.21.3-3 [126 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libaec0 i386 1.1.3-1+b1 [25.0 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libsz2 i386 1.1.3-1+b1 [8128 B] Get: 73 http://deb.debian.org/debian trixie/main i386 libaec-dev i386 1.1.3-1+b1 [23.0 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libboost1.83-dev i386 1.83.0-3.2 [10.6 MB] Get: 75 http://deb.debian.org/debian trixie/main i386 libboost-python1.83.0 i386 1.83.0-3.2 [312 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libpython3.12t64 i386 3.12.7-3 [2170 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.3-2 [165 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.7-3 [5282 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.12.6-1 [9956 B] Get: 81 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.7-3 [505 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.12.6-1 [26.1 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libboost-python1.83-dev i386 1.83.0-3.2 [336 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libboost-python-dev i386 1.83.0.2+b2 [3900 B] Get: 88 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b5 [298 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libbrotli-dev i386 1.1.0-2+b5 [313 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.11.0-1 [392 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libidn2-dev i386 2.3.7-2+b1 [126 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libkrb5-dev i386 1.21.3-3 [15.7 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libldap-dev i386 2.5.18+dfsg-3+b1 [324 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-4 [26.2 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libnghttp2-dev i386 1.64.0-1 [123 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-2+b2 [330 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-2+b2 [661 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libunbound8 i386 1.22.0-1 [632 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libgnutls-dane0t64 i386 3.8.6-2+b1 [440 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libgnutls-openssl27t64 i386 3.8.6-2+b1 [440 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libp11-kit-dev i386 0.25.5-2+b1 [208 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libtasn1-6-dev i386 4.19.0-3+b3 [102 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 nettle-dev i386 3.10-1+b1 [1334 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libgnutls28-dev i386 3.8.6-2+b1 [1449 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.3.2-2 [2790 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-1+b1 [355 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libcurl4-openssl-dev i386 8.11.0-1 [520 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-8 [735 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libhdf5-103-1t64 i386 1.10.10+repack-4 [1186 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libhdf5-cpp-103-1t64 i386 1.10.10+repack-4 [137 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libhdf5-fortran-102t64 i386 1.10.10+repack-4 [98.1 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-100t64 i386 1.10.10+repack-4 [76.0 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-fortran-100t64 i386 1.10.10+repack-4 [41.9 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-cpp-100t64 i386 1.10.10+repack-4 [21.9 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo-dev i386 1:2.1.5-3+b1 [305 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 libjpeg-dev i386 1:2.1.5-3+b1 [72.2 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 libhdf5-dev i386 1.10.10+repack-4 [2783 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.12.6-1 [1068 B] Get: 133 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.12.6-1 [1040 B] Get: 134 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.12.6-1 [1068 B] Fetched 70.5 MB in 1s (117 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.3-2_i386.deb ... Unpacking libexpat1:i386 (2.6.3-2) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_i386.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:i386 (3.12.7-3) ... Setting up libexpat1:i386 (2.6.3-2) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20276 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_i386.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... 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Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_i386.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21338 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_i386.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. 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Unpacking krb5-multidev:i386 (1.21.3-3) ... Selecting previously unselected package libaec0:i386. Preparing to unpack .../049-libaec0_1.1.3-1+b1_i386.deb ... Unpacking libaec0:i386 (1.1.3-1+b1) ... Selecting previously unselected package libsz2:i386. Preparing to unpack .../050-libsz2_1.1.3-1+b1_i386.deb ... Unpacking libsz2:i386 (1.1.3-1+b1) ... Selecting previously unselected package libaec-dev:i386. Preparing to unpack .../051-libaec-dev_1.1.3-1+b1_i386.deb ... Unpacking libaec-dev:i386 (1.1.3-1+b1) ... Selecting previously unselected package libboost1.83-dev:i386. Preparing to unpack .../052-libboost1.83-dev_1.83.0-3.2_i386.deb ... Unpacking libboost1.83-dev:i386 (1.83.0-3.2) ... Selecting previously unselected package libboost-python1.83.0. Preparing to unpack .../053-libboost-python1.83.0_1.83.0-3.2_i386.deb ... Unpacking libboost-python1.83.0 (1.83.0-3.2) ... Selecting previously unselected package libpython3.12t64:i386. 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Setting up libkeyutils1:i386 (1.6.3-4) ... Setting up libboost1.83-dev:i386 (1.83.0-3.2) ... Setting up libicu72:i386 (72.1-5+b1) ... Setting up libzstd-dev:i386 (1.5.6+dfsg-1+b1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up hdf5-helpers (1.10.10+repack-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b5) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:i386 (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:i386 (2.1.12-stable-10+b1) ... Setting up libcom-err2:i386 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:i386 (1.1.3-1+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libpsl-dev:i386 (0.21.2-1.1+b1) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 16 07:53:12 UTC 2025. Universal Time is now: Tue Dec 16 07:53:12 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libunbound8:i386 (1.22.0-1) ... Setting up libpkgconf3:i386 (1.8.1-4) ... Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-2+b2) ... Setting up libexpat1-dev:i386 (2.6.3-2) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libgnutls-dane0t64:i386 (3.8.6-2+b1) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-3+b1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up comerr-dev:i386 (2.1-1.47.1-1+b1) ... Setting up libssl-dev:i386 (3.3.2-2) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libidn2-dev:i386 (2.3.7-2+b1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up libgfortran5:i386 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libssh2-1t64:i386 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libtasn1-6-dev:i386 (4.19.0-3+b3) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libbrotli-dev:i386 (1.1.0-2+b5) ... Setting up libp11-kit-dev:i386 (0.25.5-2+b1) ... Setting up libsz2:i386 (1.1.3-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:i386 (2:6.3.0+dfsg-2+b2) ... Setting up nettle-dev:i386 (3.10-1+b1) ... Setting up libtool (2.4.7-8) ... Setting up libaec-dev:i386 (1.1.3-1+b1) ... Setting up libjpeg-dev:i386 (1:2.1.5-3+b1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:i386 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:i386 (2.5.18+dfsg-3+b1) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libssh2-1-dev:i386 (1.11.1-1) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libgnutls28-dev:i386 (3.8.6-2+b1) ... Setting up libnghttp2-dev:i386 (1.64.0-1) ... Setting up libcurl4t64:i386 (8.11.0-1) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgssrpc4t64:i386 (1.21.3-3) ... Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up libhdf5-103-1t64:i386 (1.10.10+repack-4) ... Setting up libkadm5clnt-mit12:i386 (1.21.3-3) ... Setting up libhdf5-hl-100t64:i386 (1.10.10+repack-4) ... Setting up libpython3.12-stdlib:i386 (3.12.7-3) ... Setting up libkdb5-10t64:i386 (1.21.3-3) ... Setting up python3.12 (3.12.7-3) ... Setting up libhdf5-cpp-103-1t64:i386 (1.10.10+repack-4) ... Setting up libhdf5-fortran-102t64:i386 (1.10.10+repack-4) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:i386 (3.12.7-3) ... Setting up libkadm5srv-mit12:i386 (1.21.3-3) ... Setting up libhdf5-hl-cpp-100t64:i386 (1.10.10+repack-4) ... Setting up libpython3-stdlib:i386 (3.12.6-1) ... Setting up krb5-multidev:i386 (1.21.3-3) ... Setting up libhdf5-hl-fortran-100t64:i386 (1.10.10+repack-4) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:i386 (3.12.7-3) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libkrb5-dev:i386 (1.21.3-3) ... Setting up libcurl4-openssl-dev:i386 (8.11.0-1) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:i386 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:i386 (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up libboost-python1.83-dev (1.83.0-3.2) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/19465/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/19465/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/fast5-0.6.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fast5_0.6.5-8_source.changes dpkg-buildpackage: info: source package fast5 dpkg-buildpackage: info: source version 0.6.5-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp debian/rules clean dh clean --with python3 --buildsystem=pybuild \ --sourcedirectory=python debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fast5-0.6.5' cd src && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/fast5-0.6.5/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/build/reproducible-path/fast5-0.6.5/src' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running clean removing '/build/reproducible-path/fast5-0.6.5/.pybuild/cpython3_3.12_fast5/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf python/fast5/fast5.cpp make[1]: Leaving directory '/build/reproducible-path/fast5-0.6.5' dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=python dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules binary dh binary --with python3 --buildsystem=pybuild \ --sourcedirectory=python dh_update_autotools_config -O--buildsystem=pybuild -O--sourcedirectory=python dh_autoreconf -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_configure -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running config dh_auto_build -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_ext building 'fast5' extension creating build creating build/temp.linux-i686-cpython-312 creating build/temp.linux-i686-cpython-312/fast5 i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -fPIC -I../include -I../src -I/usr/include/python3.12 -c fast5/fast5.cpp -o build/temp.linux-i686-cpython-312/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API build/temp.linux-i686-cpython-312/fast5/fast5.o -L/usr/lib/i386-linux-gnu/hdf5/serial -L/usr/lib/i386-linux-gnu -lhdf5 -o /build/reproducible-path/fast5-0.6.5/.pybuild/cpython3_3.12_fast5/build/fast5.cpython-312-i386-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting bin/f5ls -> build/scripts-3.12 copying and adjusting bin/f5pack -> build/scripts-3.12 changing mode of build/scripts-3.12/f5ls from 644 to 755 changing mode of build/scripts-3.12/f5pack from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fast5-0.6.5' cd src && /usr/bin/make make[2]: Entering directory '/build/reproducible-path/fast5-0.6.5/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /build/reproducible-path/fast5-0.6.5/src/../include -o f5ls f5ls.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /build/reproducible-path/fast5-0.6.5/src/../include -o f5ls-full f5ls-full.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /build/reproducible-path/fast5-0.6.5/src/../include -o hdf5-mod hdf5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /build/reproducible-path/fast5-0.6.5/src/../include -o f5-mod f5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl make[2]: Leaving directory '/build/reproducible-path/fast5-0.6.5/src' make[1]: Leaving directory '/build/reproducible-path/fast5-0.6.5' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=python dh_prep -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_install -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/fast5-0.6.5/debian/python3-fast5 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running build_scripts running install_lib creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5 creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.12 creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.12/dist-packages copying /build/reproducible-path/fast5-0.6.5/.pybuild/cpython3_3.12_fast5/build/fast5.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.12/dist-packages running install_egg_info running egg_info creating fast5.egg-info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt writing manifest file 'fast5.egg-info/SOURCES.txt' dependency ../include/fast5.hpp won't be automatically included in the manifest: the path can't have `..` segments dependency ../src/File_Packer.hpp won't be automatically included in the manifest: the path can't have `..` segments reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.12/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.12/f5pack -> /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.12/f5ls -> /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin changing mode of /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin/f5pack to 755 changing mode of /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin/f5ls to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/fast5-0.6.5' dh_install mkdir -p debian/fast5/usr/bin/ mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/fast5-0.6.5' dh_installdocs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installchangelogs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installexamples -O--buildsystem=pybuild -O--sourcedirectory=python dh_python3 -O--buildsystem=pybuild -O--sourcedirectory=python dh_installsystemduser -O--buildsystem=pybuild -O--sourcedirectory=python dh_perl -O--buildsystem=pybuild -O--sourcedirectory=python dh_link -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip_nondeterminism -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/fast5-0.6.5' cd src && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/fast5-0.6.5/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/build/reproducible-path/fast5-0.6.5/src' dh_compress -X .cpp -X .hpp make[1]: Leaving directory '/build/reproducible-path/fast5-0.6.5' dh_fixperms -O--buildsystem=pybuild -O--sourcedirectory=python dh_missing -O--buildsystem=pybuild -O--sourcedirectory=python dh_dwz -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux.so.2.usr-is-merged dh_installdeb -O--buildsystem=pybuild -O--sourcedirectory=python dh_gencontrol -O--buildsystem=pybuild -O--sourcedirectory=python dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=python dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-deb: building package 'fast5' in '../fast5_0.6.5-8_all.deb'. dpkg-deb: building package 'libfast5-dev' in '../libfast5-dev_0.6.5-8_all.deb'. dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-8_i386.deb'. dpkg-deb: building package 'python3-fast5-dbgsym' in '../python3-fast5-dbgsym_0.6.5-8_i386.deb'. dpkg-genbuildinfo --build=binary -O../fast5_0.6.5-8_i386.buildinfo dpkg-genchanges --build=binary -O../fast5_0.6.5-8_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/19465/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/19465/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19465 and its subdirectories I: Current time: Tue Dec 16 21:54:25 +14 2025 I: pbuilder-time-stamp: 1765871665