I: pbuilder: network access will be disabled during build I: Current time: Thu May 9 01:04:43 +14 2024 I: pbuilder-time-stamp: 1715166283 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [tortoize_2.0.11-1.dsc] I: copying [./tortoize_2.0.11.orig.tar.gz] I: copying [./tortoize_2.0.11-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Feb 2 10:03:14 2023 gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE gpgv: issuer "maarten@hekkelman.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./tortoize_2.0.11-1.dsc: no acceptable signature found dpkg-source: info: extracting tortoize in tortoize-2.0.11 dpkg-source: info: unpacking tortoize_2.0.11.orig.tar.gz dpkg-source: info: unpacking tortoize_2.0.11-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying include-dssp.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10716/tmp/hooks/D01_modify_environment starting debug: Running on cbxi4b. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 8 11:05 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/10716/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/10716/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=b3bcab5819db46edac87a0d2efd6ddc9 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=10716 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BtieFYpC/pbuilderrc_P65b --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BtieFYpC/b2 --logfile b2/build.log tortoize_2.0.11-1.dsc' SUDO_GID=116 SUDO_UID=112 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-21-armmp #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 5 11:26 /bin -> usr/bin I: user script /srv/workspace/pbuilder/10716/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libcifpp-dev, zlib1g-dev, libmcfp-dev, libboost-dev, libboost-regex-dev, cmake, libzeep-dev, mrc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev; however: Package libcifpp-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libmcfp-dev; however: Package libmcfp-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libzeep-dev; however: Package libzeep-dev is not installed. pbuilder-satisfydepends-dummy depends on mrc; however: Package mrc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcifpp-data{a} libcifpp-dev{a} libcifpp5{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libmcfp-dev{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libzeep-dev{a} libzeep5.1{a} m4{a} man-db{a} mrc{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc publicsuffix wget 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 55.8 MB of archives. After unpacking 359 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.2-2 [304 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1~rc2-1 [21.8 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 26 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [64.1 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-4.1+b2 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.7.1-3 [391 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-1.1 [134 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.29.2-2 [2167 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.29.2-2 [5215 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 46 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-4+b1 [185 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-2.1+b1 [10.6 MB] Get: 54 http://deb.debian.org/debian trixie/main armhf libboost-date-time1.83.0 armhf 1.83.0-2.1+b1 [230 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libboost-serialization1.83.0 armhf 1.83.0-2.1+b1 [315 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libboost-serialization1.83-dev armhf 1.83.0-2.1+b1 [385 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libboost-date-time1.83-dev armhf 1.83.0-2.1+b1 [239 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libboost-date-time-dev armhf 1.83.0.2+b2 [3584 B] Get: 59 http://deb.debian.org/debian trixie/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 60 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83.0 armhf 1.83.0-2.1+b1 [327 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83-dev armhf 1.83.0-2.1+b1 [370 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libboost-program-options-dev armhf 1.83.0.2+b2 [3604 B] Get: 63 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83.0 armhf 1.83.0-2.1+b1 [307 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-4+b1 [10.1 MB] Get: 65 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83-dev armhf 1.83.0-2.1+b1 [335 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libboost-regex-dev armhf 1.83.0.2+b2 [3856 B] Get: 67 http://deb.debian.org/debian trixie/main armhf libboost-system1.83.0 armhf 1.83.0-2.1+b1 [230 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libboost-system1.83-dev armhf 1.83.0-2.1+b1 [231 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libboost-system-dev armhf 1.83.0.2+b2 [3724 B] Get: 70 http://deb.debian.org/debian trixie/main armhf libcifpp-data all 5.0.7.1-3 [452 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libcifpp5 armhf 5.0.7.1-3+b1 [741 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libcifpp-dev armhf 5.0.7.1-3+b1 [86.5 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libmcfp-dev armhf 1.2.4-1 [16.0 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-1+b2 [31.9 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libzeep5.1 armhf 5.1.8-1+b1 [544 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-1+b2 [28.9 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-1+b2 [26.2 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf pkg-config armhf 1.8.1-1+b2 [14.0 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libzeep-dev armhf 5.1.8-1+b1 [78.4 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf mrc armhf 1.3.10-1 [45.8 kB] Fetched 55.8 MB in 6s (9477 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_armhf.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_armhf.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_armhf.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../17-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:armhf. Preparing to unpack .../19-libarchive13t64_3.7.2-2_armhf.deb ... Unpacking libarchive13t64:armhf (3.7.2-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../21-libkrb5support0_1.20.1-6+b1_armhf.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/10716/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/10716/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/tortoize-2.0.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../tortoize_2.0.11-1_source.changes dpkg-buildpackage: info: source package tortoize dpkg-buildpackage: info: source version 2.0.11-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.11' dh_auto_configure -- -DBUILD_SHARED_LIBS=ON cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBUILD_SHARED_LIBS=ON .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at CMakeLists.txt:37 (include): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/share/cmake-3.29/Modules/Dart.cmake:47 (message): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:37 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for C++ include filesystem -- Looking for C++ include filesystem - found -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED - Success -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3") -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: regex -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70.0") found components: system date_time regex -- Configuring done (21.7s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.11' dh_auto_build cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/tortoize-2.0.11 -B/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' make -f CMakeFiles/tortoize.dir/build.make CMakeFiles/tortoize.dir/depend make -f CMakeFiles/mrc-depends-file_tortoize.dir/build.make CMakeFiles/mrc-depends-file_tortoize.dir/depend make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' cd /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.11 /build/reproducible-path/tortoize-2.0.11 /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/CMakeFiles/mrc-depends-file_tortoize.dir/DependInfo.cmake "--color=" [ 20%] Generating tortoize_rsrc.obj /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/tortoize_rsrc.obj /build/reproducible-path/tortoize-2.0.11/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.11/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' make -f CMakeFiles/mrc-depends-file_tortoize.dir/build.make CMakeFiles/mrc-depends-file_tortoize.dir/build make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/tortoize_rsrc.obj -d /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/tortoize_rsrc.d /build/reproducible-path/tortoize-2.0.11/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.11/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' [ 20%] Built target mrc-depends-file_tortoize cd /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.11 /build/reproducible-path/tortoize-2.0.11 /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/CMakeFiles/tortoize.dir/DependInfo.cmake "--color=" Dependencies file "tortoize_rsrc.d" is newer than depends file "/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/CMakeFiles/tortoize.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tortoize make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' make -f CMakeFiles/tortoize.dir/build.make CMakeFiles/tortoize.dir/build make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' [ 40%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize.cpp.o /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/tortoize.dir/src/tortoize.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize.cpp.o -c /build/reproducible-path/tortoize-2.0.11/src/tortoize.cpp [ 60%] Building CXX object CMakeFiles/tortoize.dir/src/dssp.cpp.o /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/tortoize.dir/src/dssp.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp [ 80%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -c /build/reproducible-path/tortoize-2.0.11/src/tortoize-main.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/functional:67, from /usr/include/cif++/condition.hpp:32, from /usr/include/cif++/category.hpp:31, from /usr/include/cif++/datablock.hpp:29, from /usr/include/cif++/file.hpp:32, from /usr/include/cif++.hpp:30, from /build/reproducible-path/tortoize-2.0.11/src/dssp.hpp:34, from /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:33: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = accumulator::candidate; _Compare = __gnu_cxx::__ops::_Iter_less_val]': /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/13/string:51, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:29: /usr/include/c++/13/bits/stl_algobase.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]': /usr/include/c++/13/bits/stl_algobase.h:2064:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2064 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~ /usr/include/c++/13/bits/stl_algobase.h:2064:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /usr/include/cif++/forward_decl.hpp:32, from /usr/include/cif++/category.hpp:29: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const accumulator::candidate&}; _Tp = accumulator::candidate; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:577:17, inlined from 'double dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:640:14: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:577:17, inlined from 'double dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:641:14: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:577:17, inlined from 'double dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:642:14: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:577:17, inlined from 'double dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:643:14: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:577:17, inlined from 'double dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:646:15: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {dssp::residue}; _Tp = dssp::residue; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {dssp::residue}; _Tp = dssp::residue; _Alloc = std::allocator]', inlined from 'DSSP_impl::DSSP_impl(const cif::datablock&, int, int)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:1411:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]', inlined from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator >; _Predicate = DSSP_impl::findRes(const std::string&, int)::]' at /usr/include/c++/13/bits/stl_algo.h:3923:28, inlined from 'auto DSSP_impl::findRes(const std::string&, int)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:1344:22, inlined from 'void DSSP_impl::calculateSecondaryStructure()' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:1488:20: /usr/include/c++/13/bits/stl_algobase.h:2117:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2117 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2118 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]', inlined from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator >; _Predicate = DSSP_impl::findRes(const std::string&, int)::]' at /usr/include/c++/13/bits/stl_algo.h:3923:28, inlined from 'auto DSSP_impl::findRes(const std::string&, int)' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:1344:22, inlined from 'void DSSP_impl::calculateSecondaryStructure()' at /build/reproducible-path/tortoize-2.0.11/src/dssp.cpp:1497:20: /usr/include/c++/13/bits/stl_algobase.h:2117:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2117 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2118 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable tortoize /usr/bin/cmake -E cmake_link_script CMakeFiles/tortoize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now CMakeFiles/tortoize.dir/src/dssp.cpp.o CMakeFiles/tortoize.dir/src/tortoize.cpp.o "CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o" tortoize_rsrc.obj -o tortoize /usr/lib/arm-linux-gnueabihf/libcifpp.so.5.0.7.1 /usr/lib/arm-linux-gnueabihf/libzeep.so.5.1.8 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_date_time.so.1.83.0 /usr/bin/ld: warning: tortoize_rsrc.obj: missing .note.GNU-stack section implies executable stack /usr/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' [100%] Built target tortoize make[2]: Leaving directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' dh_auto_test cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/tortoize/ cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/tortoize-2.0.11/debian/tortoize AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/tortoize-2.0.11 -B/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/tortoize-2.0.11/debian/tortoize/usr/bin/tortoize -- Installing: /build/reproducible-path/tortoize-2.0.11/debian/tortoize/usr/share/man/man1/tortoize.1 make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.11/obj-arm-linux-gnueabihf' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/tortoize/usr/bin/tortoize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'tortoize' in '../tortoize_2.0.11-1_armhf.deb'. dpkg-deb: building package 'tortoize-dbgsym' in '../tortoize-dbgsym_2.0.11-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../tortoize_2.0.11-1_armhf.buildinfo dpkg-genchanges --build=binary -O../tortoize_2.0.11-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/10716/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/10716/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10716 and its subdirectories I: Current time: Thu May 9 01:14:04 +14 2024 I: pbuilder-time-stamp: 1715166845