I: pbuilder: network access will be disabled during build I: Current time: Thu May 9 07:27:30 +14 2024 I: pbuilder-time-stamp: 1715189250 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 12:45:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4205/tmp/hooks/D01_modify_environment starting debug: Running on virt32a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 8 17:27 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4205/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4205/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=9be7111d0d404f0382390639c4866ba5 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4205 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4afJXjzD/pbuilderrc_eeUL --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4afJXjzD/b2 --logfile b2/build.log racon_1.5.0-3.dsc' SUDO_GID=113 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 7 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4205/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 31.1 MB of archives. After unpacking 118 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.2-2 [304 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1~rc2-1 [21.8 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 26 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [64.1 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-4.1+b2 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.7.1-3 [391 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-1.1 [134 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.29.2-2 [2167 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.29.2-2 [5215 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 46 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf googletest all 1.14.0-1 [512 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libbiosoup-dev all 0.11.0-2 [8000 B] Get: 54 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libbioparser-dev all 3.1.0-1 [9108 B] Get: 56 http://deb.debian.org/debian trixie/main armhf rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libcereal-dev armhf 1.3.2+dfsg-5 [221 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libedlib1 armhf 1.2.7-5 [14.6 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libedlib-dev armhf 1.2.7-5 [19.8 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libgtest-dev armhf 1.14.0-1+b1 [240 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libspoa7.0.0 armhf 4.1.4-1 [59.9 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libspoa-dev armhf 4.1.4-1 [9388 B] Get: 63 http://deb.debian.org/debian trixie/main armhf libthread-pool-dev armhf 4.0.0-2 [7304 B] Get: 64 http://deb.debian.org/debian trixie/main armhf rampler armhf 2.1.1-1 [19.3 kB] Fetched 31.1 MB in 3s (11.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_armhf.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_armhf.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_armhf.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../17-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:armhf. Preparing to unpack .../19-libarchive13t64_3.7.2-2_armhf.deb ... Unpacking libarchive13t64:armhf (3.7.2-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../21-libkrb5support0_1.20.1-6+b1_armhf.deb ... Unpacking libkrb5support0:armhf (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../22-libcom-err2_1.47.1~rc2-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1~rc2-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../23-libk5crypto3_1.20.1-6+b1_armhf.deb ... Unpacking libk5crypto3:armhf (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../24-libkeyutils1_1.6.3-3_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../25-libkrb5-3_1.20.1-6+b1_armhf.deb ... Unpacking libkrb5-3:armhf (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../26-libgssapi-krb5-2_1.20.1-6+b1_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.20.1-6+b1) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../27-libnghttp2-14_1.61.0-1+b1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:armhf. Preparing to unpack .../28-libpsl5t64_0.21.2-1.1_armhf.deb ... Unpacking libpsl5t64:armhf (0.21.2-1.1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../29-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:armhf. Preparing to unpack .../30-libssh2-1t64_1.11.0-4.1+b2_armhf.deb ... Unpacking libssh2-1t64:armhf (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl4t64:armhf. Preparing to unpack .../31-libcurl4t64_8.7.1-3_armhf.deb ... Unpacking libcurl4t64:armhf (8.7.1-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../32-libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package libjsoncpp25:armhf. Preparing to unpack .../33-libjsoncpp25_1.9.5-6+b2_armhf.deb ... Unpacking libjsoncpp25:armhf (1.9.5-6+b2) ... Selecting previously unselected package librhash0:armhf. Preparing to unpack .../34-librhash0_1.4.3-3+b1_armhf.deb ... Unpacking librhash0:armhf (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:armhf. Preparing to unpack .../35-libuv1t64_1.48.0-1.1_armhf.deb ... Unpacking libuv1t64:armhf (1.48.0-1.1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../36-cmake-data_3.29.2-2_all.deb ... Unpacking cmake-data (3.29.2-2) ... Selecting previously unselected package cmake. Preparing to unpack .../37-cmake_3.29.2-2_armhf.deb ... Unpacking cmake (3.29.2-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../38-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../39-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../40-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../41-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../42-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../43-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../44-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../45-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../46-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../47-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../48-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../49-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../50-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package googletest. Preparing to unpack .../51-googletest_1.14.0-1_all.deb ... Unpacking googletest (1.14.0-1) ... Selecting previously unselected package libbiosoup-dev. Preparing to unpack .../52-libbiosoup-dev_0.11.0-2_all.deb ... Unpacking libbiosoup-dev (0.11.0-2) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../53-zlib1g-dev_1%3a1.3.dfsg-3.1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3.1) ... Selecting previously unselected package libbioparser-dev. Preparing to unpack .../54-libbioparser-dev_3.1.0-1_all.deb ... Unpacking libbioparser-dev (3.1.0-1) ... Selecting previously unselected package rapidjson-dev. Preparing to unpack .../55-rapidjson-dev_1.1.0+dfsg2-7.2_all.deb ... Unpacking rapidjson-dev (1.1.0+dfsg2-7.2) ... Selecting previously unselected package libcereal-dev. Preparing to unpack .../56-libcereal-dev_1.3.2+dfsg-5_armhf.deb ... Unpacking libcereal-dev (1.3.2+dfsg-5) ... Selecting previously unselected package libedlib1:armhf. Preparing to unpack .../57-libedlib1_1.2.7-5_armhf.deb ... Unpacking libedlib1:armhf (1.2.7-5) ... Selecting previously unselected package libedlib-dev:armhf. Preparing to unpack .../58-libedlib-dev_1.2.7-5_armhf.deb ... Unpacking libedlib-dev:armhf (1.2.7-5) ... Selecting previously unselected package libgtest-dev:armhf. Preparing to unpack .../59-libgtest-dev_1.14.0-1+b1_armhf.deb ... Unpacking libgtest-dev:armhf (1.14.0-1+b1) ... Selecting previously unselected package libspoa7.0.0:armhf. Preparing to unpack .../60-libspoa7.0.0_4.1.4-1_armhf.deb ... Unpacking libspoa7.0.0:armhf (4.1.4-1) ... Selecting previously unselected package libspoa-dev:armhf. Preparing to unpack .../61-libspoa-dev_4.1.4-1_armhf.deb ... Unpacking libspoa-dev:armhf (4.1.4-1) ... Selecting previously unselected package libthread-pool-dev. Preparing to unpack .../62-libthread-pool-dev_4.0.0-2_armhf.deb ... Unpacking libthread-pool-dev (4.0.0-2) ... Selecting previously unselected package rampler. Preparing to unpack .../63-rampler_2.1.1-1_armhf.deb ... Unpacking rampler (2.1.1-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libkeyutils1:armhf (1.6.3-3) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:armhf (1.1.0-2+b3) ... Setting up libuv1t64:armhf (1.48.0-1.1) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up libpsl5t64:armhf (0.21.2-1.1) ... Setting up libnghttp2-14:armhf (1.61.0-1+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:armhf (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up googletest (1.14.0-1) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.2) ... Setting up libkrb5support0:armhf (1.20.1-6+b1) ... Setting up libbiosoup-dev (0.11.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up rampler (2.1.1-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:armhf (2:4.0.4-4) ... Setting up libthread-pool-dev (4.0.0-2) ... Setting up libspoa7.0.0:armhf (4.1.4-1) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:armhf (1.9.5-6+b2) ... Setting up libk5crypto3:armhf (1.20.1-6+b1) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1) ... Setting up libedlib1:armhf (1.2.7-5) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libbioparser-dev (3.1.0-1) ... Setting up librhash0:armhf (1.4.3-3+b1) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libsub-override-perl (0.10-1) ... Setting up cmake-data (3.29.2-2) ... Setting up libkrb5-3:armhf (1.20.1-6+b1) ... Setting up libssh2-1t64:armhf (1.11.0-4.1+b2) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libgtest-dev:armhf (1.14.0-1+b1) ... Setting up libtool (2.4.7-7) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6+b1) ... Setting up libedlib-dev:armhf (1.2.7-5) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libarchive13t64:armhf (3.7.2-2) ... Setting up libcurl4t64:armhf (8.7.1-3) ... Setting up libspoa-dev:armhf (4.1.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.29.2-2) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/4205/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/4205/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (5.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles/racon.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp [ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp [ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp [ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:54: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/reproducible-path/racon-1.5.0/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); | ~~^ ~~~ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend cd /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/arm-linux-gnueabihf/libgtest_main.a /usr/lib/arm-linux-gnueabihf/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (22 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (12 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (12 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (20 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (24 ms) [----------] 5 tests from RaconInitializeTest (111 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.010357 s [racon::Polisher::initialize] loaded sequences 0.264443 s [racon::Polisher::initialize] loaded overlaps 0.006663 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.238530 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.307027 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.406787 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.532185 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.620125 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.648143 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.732178 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.896152 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.940134 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.024161 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.108141 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.276079 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.392215 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.448119 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.588130 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.742206 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.796102 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.916143 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.968114 s [racon::Polisher::initialize] aligning overlaps [====================] 2.044166 s [racon::Polisher::initialize] transformed data into windows 0.034515 s [racon::Polisher::polish] generating consensus [=> ] 1.787847 s [racon::Polisher::polish] generating consensus [==> ] 3.451793 s [racon::Polisher::polish] generating consensus [===> ] 5.335803 s [racon::Polisher::polish] generating consensus [====> ] 6.487858 s [racon::Polisher::polish] generating consensus [=====> ] 6.955884 s [racon::Polisher::polish] generating consensus [======> ] 7.679813 s [racon::Polisher::polish] generating consensus [=======> ] 8.343833 s [racon::Polisher::polish] generating consensus [========> ] 9.059733 s [racon::Polisher::polish] generating consensus [=========> ] 9.687759 s [racon::Polisher::polish] generating consensus [==========> ] 11.421207 s [racon::Polisher::polish] generating consensus [===========> ] 12.950981 s [racon::Polisher::polish] generating consensus [============> ] 15.495800 s [racon::Polisher::polish] generating consensus [=============> ] 18.247885 s [racon::Polisher::polish] generating consensus [==============> ] 21.537714 s [racon::Polisher::polish] generating consensus [===============> ] 23.855617 s [racon::Polisher::polish] generating consensus [================> ] 25.567866 s [racon::Polisher::polish] generating consensus [=================> ] 27.635891 s [racon::Polisher::polish] generating consensus [==================> ] 28.866724 s [racon::Polisher::polish] generating consensus [===================>] 30.522715 s [racon::Polisher::polish] generating consensus [====================] 37.040564 s [racon::Polisher::] total = 39.491903 s [ OK ] RaconPolishingTest.ConsensusWithQualities (39593 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.010351 s [racon::Polisher::initialize] loaded sequences 0.131728 s [racon::Polisher::initialize] loaded overlaps 0.005309 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.148050 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.252132 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.352092 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.463972 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.552140 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.576103 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.787758 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.908165 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.004093 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.088126 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.204128 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.300132 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.416137 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.472073 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.552163 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.688152 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.740190 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.820197 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.936106 s [racon::Polisher::initialize] aligning overlaps [====================] 2.020483 s [racon::Polisher::initialize] transformed data into windows 0.001677 s [racon::Polisher::polish] generating consensus [=> ] 1.912417 s [racon::Polisher::polish] generating consensus [==> ] 4.168446 s [racon::Polisher::polish] generating consensus [===> ] 5.856467 s [racon::Polisher::polish] generating consensus [====> ] 7.120412 s [racon::Polisher::polish] generating consensus [=====> ] 7.935638 s [racon::Polisher::polish] generating consensus [======> ] 8.860396 s [racon::Polisher::polish] generating consensus [=======> ] 9.712429 s [racon::Polisher::polish] generating consensus [========> ] 10.576406 s [racon::Polisher::polish] generating consensus [=========> ] 12.028405 s [racon::Polisher::polish] generating consensus [==========> ] 14.251206 s [racon::Polisher::polish] generating consensus [===========> ] 16.619220 s [racon::Polisher::polish] generating consensus [============> ] 19.492418 s [racon::Polisher::polish] generating consensus [=============> ] 23.724323 s [racon::Polisher::polish] generating consensus [==============> ] 27.003216 s [racon::Polisher::polish] generating consensus [===============> ] 30.156314 s [racon::Polisher::polish] generating consensus [================> ] 32.787214 s [racon::Polisher::polish] generating consensus [=================> ] 34.963228 s [racon::Polisher::polish] generating consensus [==================> ] 36.876258 s [racon::Polisher::polish] generating consensus [===================>] 39.384837 s [racon::Polisher::polish] generating consensus [====================] 51.172356 s [racon::Polisher::] total = 53.405949 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (53467 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.001534 s [racon::Polisher::initialize] loaded sequences 0.206386 s [racon::Polisher::initialize] loaded overlaps 0.117541 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.045500 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.046635 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.047447 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.048218 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.048918 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.049459 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.050006 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.050563 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.051104 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.051662 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.052289 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.053006 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.053617 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.054247 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.055570 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.057210 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.057803 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.058560 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.059131 s [racon::Polisher::initialize] aligning overlaps [====================] 0.059724 s [racon::Polisher::initialize] transformed data into windows 0.008868 s [racon::Polisher::polish] generating consensus [=> ] 1.760493 s [racon::Polisher::polish] generating consensus [==> ] 3.480486 s [racon::Polisher::polish] generating consensus [===> ] 5.076563 s [racon::Polisher::polish] generating consensus [====> ] 6.012492 s [racon::Polisher::polish] generating consensus [=====> ] 6.520573 s [racon::Polisher::polish] generating consensus [======> ] 7.072547 s [racon::Polisher::polish] generating consensus [=======> ] 7.592524 s [racon::Polisher::polish] generating consensus [========> ] 8.600652 s [racon::Polisher::polish] generating consensus [=========> ] 9.452463 s [racon::Polisher::polish] generating consensus [==========> ] 10.936590 s [racon::Polisher::polish] generating consensus [===========> ] 12.703392 s [racon::Polisher::polish] generating consensus [============> ] 14.427417 s [racon::Polisher::polish] generating consensus [=============> ] 17.576682 s [racon::Polisher::polish] generating consensus [==============> ] 20.883397 s [racon::Polisher::polish] generating consensus [===============> ] 23.175395 s [racon::Polisher::polish] generating consensus [================> ] 24.883392 s [racon::Polisher::polish] generating consensus [=================> ] 27.124512 s [racon::Polisher::polish] generating consensus [==================> ] 28.312281 s [racon::Polisher::polish] generating consensus [===================>] 29.424296 s [racon::Polisher::polish] generating consensus [====================] 36.667363 s [racon::Polisher::] total = 37.163479 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (37251 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.016596 s [racon::Polisher::initialize] loaded sequences 0.196036 s [racon::Polisher::initialize] loaded overlaps 0.200465 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.064431 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.064474 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.064495 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.064517 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.064537 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.064556 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.064576 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.072425 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.072464 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.072485 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.072504 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.072528 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.072549 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.072569 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.072592 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.076406 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.076439 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.076459 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.076481 s [racon::Polisher::initialize] aligning overlaps [====================] 0.079970 s [racon::Polisher::initialize] transformed data into windows 0.001282 s [racon::Polisher::polish] generating consensus [=> ] 2.606959 s [racon::Polisher::polish] generating consensus [==> ] 4.982970 s [racon::Polisher::polish] generating consensus [===> ] 7.171433 s [racon::Polisher::polish] generating consensus [====> ] 8.811012 s [racon::Polisher::polish] generating consensus [=====> ] 10.038956 s [racon::Polisher::polish] generating consensus [======> ] 10.987498 s [racon::Polisher::polish] generating consensus [=======> ] 12.035409 s [racon::Polisher::polish] generating consensus [========> ] 13.504073 s [racon::Polisher::polish] generating consensus [=========> ] 14.550142 s [racon::Polisher::polish] generating consensus [==========> ] 16.706968 s [racon::Polisher::polish] generating consensus [===========> ] 18.895906 s [racon::Polisher::polish] generating consensus [============> ] 21.532129 s [racon::Polisher::polish] generating consensus [=============> ] 25.798971 s [racon::Polisher::polish] generating consensus [==============> ] 29.090921 s [racon::Polisher::polish] generating consensus [===============> ] 32.020010 s [racon::Polisher::polish] generating consensus [================> ] 34.430273 s [racon::Polisher::polish] generating consensus [=================> ] 36.847947 s [racon::Polisher::polish] generating consensus [==================> ] 38.317822 s [racon::Polisher::polish] generating consensus [===================>] 40.039001 s [racon::Polisher::polish] generating consensus [====================] 49.266203 s [racon::Polisher::] total = 49.821940 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (49936 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.007450 s [racon::Polisher::initialize] loaded sequences 0.203761 s [racon::Polisher::initialize] loaded overlaps 0.001237 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.178170 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.258184 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.353975 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.470039 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.558096 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.594080 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.818247 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.922175 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.014010 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.089589 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.197485 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.286062 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.389774 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.450075 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.625076 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.833064 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.905092 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.976842 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.040715 s [racon::Polisher::initialize] aligning overlaps [====================] 2.057090 s [racon::Polisher::initialize] transformed data into windows 0.016411 s [racon::Polisher::polish] generating consensus [=> ] 6.483315 s [racon::Polisher::polish] generating consensus [==> ] 6.483373 s [racon::Polisher::polish] generating consensus [===> ] 11.947306 s [racon::Polisher::polish] generating consensus [====> ] 11.947377 s [racon::Polisher::polish] generating consensus [=====> ] 14.631283 s [racon::Polisher::polish] generating consensus [======> ] 14.631339 s [racon::Polisher::polish] generating consensus [=======> ] 16.875297 s [racon::Polisher::polish] generating consensus [========> ] 16.875378 s [racon::Polisher::polish] generating consensus [=========> ] 21.156397 s [racon::Polisher::polish] generating consensus [==========> ] 21.157886 s [racon::Polisher::polish] generating consensus [===========> ] 28.568422 s [racon::Polisher::polish] generating consensus [============> ] 29.024495 s [racon::Polisher::polish] generating consensus [=============> ] 38.723297 s [racon::Polisher::polish] generating consensus [==============> ] 39.931306 s [racon::Polisher::polish] generating consensus [===============> ] 46.394888 s [racon::Polisher::polish] generating consensus [================> ] 47.404225 s [racon::Polisher::polish] generating consensus [=================> ] 53.579304 s [racon::Polisher::polish] generating consensus [==================> ] 53.579360 s [racon::Polisher::polish] generating consensus [===================>] 58.982418 s [racon::Polisher::polish] generating consensus [====================] 71.320489 s [racon::Polisher::] total = 73.646749 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (73829 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.007448 s [racon::Polisher::initialize] loaded sequences 0.178440 s [racon::Polisher::initialize] loaded overlaps 0.001276 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.175437 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.271379 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.383465 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.491456 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.587488 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.683484 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.919440 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.035481 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.131449 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.215426 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.331466 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.427389 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.547481 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.599462 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.675427 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.731457 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.787491 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.890408 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.032171 s [racon::Polisher::initialize] aligning overlaps [====================] 2.123470 s [racon::Polisher::initialize] transformed data into windows 0.030048 s [racon::Polisher::polish] generating consensus [=> ] 1.708126 s [racon::Polisher::polish] generating consensus [==> ] 3.292139 s [racon::Polisher::polish] generating consensus [===> ] 4.828150 s [racon::Polisher::polish] generating consensus [====> ] 5.844287 s [racon::Polisher::polish] generating consensus [=====> ] 6.398739 s [racon::Polisher::polish] generating consensus [======> ] 7.060168 s [racon::Polisher::polish] generating consensus [=======> ] 7.631996 s [racon::Polisher::polish] generating consensus [========> ] 8.352158 s [racon::Polisher::polish] generating consensus [=========> ] 9.399017 s [racon::Polisher::polish] generating consensus [==========> ] 10.463039 s [racon::Polisher::polish] generating consensus [===========> ] 12.428140 s [racon::Polisher::polish] generating consensus [============> ] 14.859890 s [racon::Polisher::polish] generating consensus [=============> ] 18.000094 s [racon::Polisher::polish] generating consensus [==============> ] 21.292223 s [racon::Polisher::polish] generating consensus [===============> ] 23.448108 s [racon::Polisher::polish] generating consensus [================> ] 25.100081 s [racon::Polisher::polish] generating consensus [=================> ] 27.332037 s [racon::Polisher::polish] generating consensus [==================> ] 28.830236 s [racon::Polisher::polish] generating consensus [===================>] 30.752139 s [racon::Polisher::polish] generating consensus [====================] 35.963513 s [racon::Polisher::] total = 38.391945 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (38446 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.206325 s [racon::Polisher::initialize] loaded sequences 0.215721 s [racon::Polisher::initialize] loaded overlaps 0.067385 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.220034 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.344005 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.416055 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.516033 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.612034 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.723977 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.891970 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.992041 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.131947 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.211985 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.307942 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.504231 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.632122 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.787989 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.891968 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.047979 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.092020 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.124002 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.216072 s [racon::Polisher::initialize] aligning overlaps [====================] 2.339888 s [racon::Polisher::initialize] transformed data into windows 0.050679 s [racon::Polisher::polish] generating consensus [=> ] 1.152499 s [racon::Polisher::polish] generating consensus [==> ] 2.608406 s [racon::Polisher::polish] generating consensus [===> ] 3.716567 s [racon::Polisher::polish] generating consensus [====> ] 3.723183 s [racon::Polisher::polish] generating consensus [=====> ] 4.572515 s [racon::Polisher::polish] generating consensus [======> ] 5.124633 s [racon::Polisher::polish] generating consensus [=======> ] 5.928586 s [racon::Polisher::polish] generating consensus [========> ] 6.100599 s [racon::Polisher::polish] generating consensus [=========> ] 7.684580 s [racon::Polisher::polish] generating consensus [==========> ] 8.328350 s [racon::Polisher::polish] generating consensus [===========> ] 8.848474 s [racon::Polisher::polish] generating consensus [============> ] 9.048548 s [racon::Polisher::polish] generating consensus [=============> ] 9.728274 s [racon::Polisher::polish] generating consensus [==============> ] 9.744407 s [racon::Polisher::polish] generating consensus [===============> ] 11.192445 s [racon::Polisher::polish] generating consensus [================> ] 11.199616 s [racon::Polisher::polish] generating consensus [=================> ] 13.968421 s [racon::Polisher::polish] generating consensus [==================> ] 14.940541 s [racon::Polisher::polish] generating consensus [===================>] 16.000680 s [racon::Polisher::polish] generating consensus [====================] 16.333783 s [racon::Polisher::] total = 19.222336 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (19291 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.227262 s [racon::Polisher::initialize] loaded sequences 0.214389 s [racon::Polisher::initialize] loaded overlaps 0.062841 s [racon::Polisher::initialize] aligning overlaps [=> ] 2.759343 s [racon::Polisher::initialize] aligning overlaps [==> ] 4.707478 s [racon::Polisher::initialize] aligning overlaps [===> ] 6.291460 s [racon::Polisher::initialize] aligning overlaps [====> ] 8.583413 s [racon::Polisher::initialize] aligning overlaps [=====> ] 10.635635 s [racon::Polisher::initialize] aligning overlaps [======> ] 12.010343 s [racon::Polisher::initialize] aligning overlaps [=======> ] 13.974361 s [racon::Polisher::initialize] aligning overlaps [========> ] 16.494347 s [racon::Polisher::initialize] aligning overlaps [=========> ] 18.499450 s [racon::Polisher::initialize] aligning overlaps [==========> ] 20.822335 s [racon::Polisher::initialize] aligning overlaps [===========> ] 22.487420 s [racon::Polisher::initialize] aligning overlaps [============> ] 25.110370 s [racon::Polisher::initialize] aligning overlaps [=============> ] 28.042357 s [racon::Polisher::initialize] aligning overlaps [==============> ] 30.339396 s [racon::Polisher::initialize] aligning overlaps [===============> ] 33.223449 s [racon::Polisher::initialize] aligning overlaps [================> ] 35.697764 s [racon::Polisher::initialize] aligning overlaps [=================> ] 37.815500 s [racon::Polisher::initialize] aligning overlaps [==================> ] 40.703497 s [racon::Polisher::initialize] aligning overlaps [===================>] 43.527428 s [racon::Polisher::initialize] aligning overlaps [====================] 45.394354 s [racon::Polisher::initialize] transformed data into windows 0.606939 s [racon::Polisher::polish] generating consensus [=> ] 62.551919 s [racon::Polisher::polish] generating consensus [==> ] 105.484099 s [racon::Polisher::polish] generating consensus [===> ] 146.747809 s [racon::Polisher::polish] generating consensus [====> ] 177.951813 s [racon::Polisher::polish] generating consensus [=====> ] 201.814978 s [racon::Polisher::polish] generating consensus [======> ] 240.238713 s [racon::Polisher::polish] generating consensus [=======> ] 274.071793 s [racon::Polisher::polish] generating consensus [========> ] 299.430688 s [racon::Polisher::polish] generating consensus [=========> ] 331.610682 s [racon::Polisher::polish] generating consensus [==========> ] 368.951763 s [racon::Polisher::polish] generating consensus [===========> ] 398.331825 s [racon::Polisher::polish] generating consensus [============> ] 433.314727 s [racon::Polisher::polish] generating consensus [=============> ] 466.587755 s [racon::Polisher::polish] generating consensus [==============> ] 499.030666 s [racon::Polisher::polish] generating consensus [===============> ] 535.959344 s [racon::Polisher::polish] generating consensus [================> ] 557.426715 s [racon::Polisher::polish] generating consensus [=================> ] 594.271492 s [racon::Polisher::polish] generating consensus [==================> ] 636.267685 s [racon::Polisher::polish] generating consensus [===================>] 697.282660 s [racon::Polisher::polish] generating consensus [====================] 741.122783 s [racon::Polisher::] total = 787.689593 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (787772 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.187393 s [racon::Polisher::initialize] loaded sequences 0.194799 s [racon::Polisher::initialize] loaded overlaps 0.094211 s [racon::Polisher::initialize] aligning overlaps [=> ] 4.426709 s [racon::Polisher::initialize] aligning overlaps [==> ] 7.230451 s [racon::Polisher::initialize] aligning overlaps [===> ] 9.510405 s [racon::Polisher::initialize] aligning overlaps [====> ] 12.642457 s [racon::Polisher::initialize] aligning overlaps [=====> ] 15.634448 s [racon::Polisher::initialize] aligning overlaps [======> ] 17.745425 s [racon::Polisher::initialize] aligning overlaps [=======> ] 20.742487 s [racon::Polisher::initialize] aligning overlaps [========> ] 24.414447 s [racon::Polisher::initialize] aligning overlaps [=========> ] 27.269917 s [racon::Polisher::initialize] aligning overlaps [==========> ] 29.258522 s [racon::Polisher::initialize] aligning overlaps [===========> ] 30.998462 s [racon::Polisher::initialize] aligning overlaps [============> ] 33.187667 s [racon::Polisher::initialize] aligning overlaps [=============> ] 35.396472 s [racon::Polisher::initialize] aligning overlaps [==============> ] 37.034886 s [racon::Polisher::initialize] aligning overlaps [===============> ] 39.851459 s [racon::Polisher::initialize] aligning overlaps [================> ] 41.762878 s [racon::Polisher::initialize] aligning overlaps [=================> ] 43.970440 s [racon::Polisher::initialize] aligning overlaps [==================> ] 46.378839 s [racon::Polisher::initialize] aligning overlaps [===================>] 48.431501 s [racon::Polisher::initialize] aligning overlaps [====================] 49.065690 s [racon::Polisher::initialize] transformed data into windows 0.046202 s [racon::Polisher::polish] generating consensus [=> ] 47.112102 s [racon::Polisher::polish] generating consensus [==> ] 120.308100 s [racon::Polisher::polish] generating consensus [===> ] 164.648187 s [racon::Polisher::polish] generating consensus [====> ] 187.472905 s [racon::Polisher::polish] generating consensus [=====> ] 266.712392 s [racon::Polisher::polish] generating consensus [======> ] 300.847546 s [racon::Polisher::polish] generating consensus [=======> ] 374.144514 s [racon::Polisher::polish] generating consensus [========> ] 430.352123 s [racon::Polisher::polish] generating consensus [=========> ] 476.613167 s [racon::Polisher::polish] generating consensus [==========> ] 541.069446 s [racon::Polisher::polish] generating consensus [===========> ] 597.660220 s [racon::Polisher::polish] generating consensus [============> ] 649.820188 s [racon::Polisher::polish] generating consensus [=============> ] 710.897099 s [racon::Polisher::polish] generating consensus [==============> ] 776.068102 s [racon::Polisher::polish] generating consensus [===============> ] 841.906314 s [racon::Polisher::polish] generating consensus [================> ] 869.316190 s [racon::Polisher::polish] generating consensus [=================> ] 929.732146 s [racon::Polisher::polish] generating consensus [==================> ] 1006.295199 s [racon::Polisher::polish] generating consensus [===================>] 1078.424096 s [racon::Polisher::polish] generating consensus [====================] 1131.884199 s [racon::Polisher::] total = 1181.482735 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (1181630 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.334405 s [racon::Polisher::initialize] loaded sequences 0.299009 s [racon::Polisher::initialize] loaded overlaps 0.081409 s [racon::Polisher::initialize] aligning overlaps [=> ] 3.701242 s [racon::Polisher::initialize] aligning overlaps [==> ] 6.058253 s [racon::Polisher::initialize] aligning overlaps [===> ] 8.495325 s [racon::Polisher::initialize] aligning overlaps [====> ] 11.758250 s [racon::Polisher::initialize] aligning overlaps [=====> ] 14.642246 s [racon::Polisher::initialize] aligning overlaps [======> ] 16.558249 s [racon::Polisher::initialize] aligning overlaps [=======> ] 19.606260 s [racon::Polisher::initialize] aligning overlaps [========> ] 23.274261 s [racon::Polisher::initialize] aligning overlaps [=========> ] 27.302266 s [racon::Polisher::initialize] aligning overlaps [==========> ] 30.965981 s [racon::Polisher::initialize] aligning overlaps [===========> ] 33.190277 s [racon::Polisher::initialize] aligning overlaps [============> ] 35.010220 s [racon::Polisher::initialize] aligning overlaps [=============> ] 37.294237 s [racon::Polisher::initialize] aligning overlaps [==============> ] 38.558261 s [racon::Polisher::initialize] aligning overlaps [===============> ] 40.270225 s [racon::Polisher::initialize] aligning overlaps [================> ] 41.274554 s [racon::Polisher::initialize] aligning overlaps [=================> ] 43.470504 s [racon::Polisher::initialize] aligning overlaps [==================> ] 45.702944 s [racon::Polisher::initialize] aligning overlaps [===================>] 47.187028 s [racon::Polisher::initialize] aligning overlaps [====================] 48.575272 s [racon::Polisher::initialize] transformed data into windows 0.360205 s [racon::Polisher::polish] generating consensus [=> ] 43.032554 s [racon::Polisher::polish] generating consensus [==> ] 92.088578 s [racon::Polisher::polish] generating consensus [===> ] 139.772637 s [racon::Polisher::polish] generating consensus [====> ] 190.328658 s [racon::Polisher::polish] generating consensus [=====> ] 219.420591 s [racon::Polisher::polish] generating consensus [======> ] 251.465695 s [racon::Polisher::polish] generating consensus [=======> ] 281.473693 s [racon::Polisher::polish] generating consensus [========> ] 314.724579 s [racon::Polisher::polish] generating consensus [=========> ] 347.516549 s [racon::Polisher::polish] generating consensus [==========> ] 393.093045 s [racon::Polisher::polish] generating consensus [===========> ] 428.317758 s [racon::Polisher::polish] generating consensus [============> ] 468.893205 s [racon::Polisher::polish] generating consensus [=============> ] 506.473657 s [racon::Polisher::polish] generating consensus [==============> ] 542.337751 s [racon::Polisher::polish] generating consensus [===============> ] 583.252577 s [racon::Polisher::polish] generating consensus [================> ] 607.289004 s [racon::Polisher::polish] generating consensus [=================> ] 649.381708 s [racon::Polisher::polish] generating consensus [==================> ] 685.717730 s [racon::Polisher::polish] generating consensus [===================>] 725.105662 s [racon::Polisher::polish] generating consensus [====================] 755.304161 s [racon::Polisher::] total = 804.968030 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (805076 ms) [----------] 10 tests from RaconPolishingTest (3086314 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (3086426 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: debian/racon/usr/bin/racon contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_armhf.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_armhf.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4205/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4205/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4205 and its subdirectories I: Current time: Thu May 9 08:23:45 +14 2024 I: pbuilder-time-stamp: 1715192625