I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 17 00:52:22 +14 2024 I: pbuilder-time-stamp: 1713264742 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-mofa_1.6.1+dfsg-12.dsc] I: copying [./r-bioc-mofa_1.6.1+dfsg.orig.tar.xz] I: copying [./r-bioc-mofa_1.6.1+dfsg-12.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 30 17:10:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-mofa_1.6.1+dfsg-12.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-mofa in r-bioc-mofa-1.6.1+dfsg dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying r-api-bioc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20537/tmp/hooks/D01_modify_environment starting debug: Running on ff4a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 16 10:53 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/20537/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/20537/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=b2bfb9fbe79c492a85865842563a39dc LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=20537 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.O7EADHZI/pbuilderrc_FfBZ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.O7EADHZI/b2 --logfile b2/build.log r-bioc-mofa_1.6.1+dfsg-12.dsc' SUDO_GID=113 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 14 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20537/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, xvfb, r-bioc-rhdf5, r-cran-dplyr, r-cran-reshape2, r-cran-pheatmap, r-cran-corrplot, r-cran-ggplot2, r-cran-ggbeeswarm, r-cran-scales, r-cran-ggally, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-bioc-biobase, r-cran-doparallel, r-cran-foreach, r-cran-reticulate, r-bioc-multiassayexperiment, python3-all, dh-sequence-python3, python3-pandas, python3-setuptools, python3-scipy, python3-numpy, python3-sklearn, python3-h5py dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-pheatmap; however: Package r-cran-pheatmap is not installed. pbuilder-satisfydepends-dummy depends on r-cran-corrplot; however: Package r-cran-corrplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggbeeswarm; however: Package r-cran-ggbeeswarm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scales; however: Package r-cran-scales is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggally; however: Package r-cran-ggally is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-cowplot; however: Package r-cran-cowplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggrepel; however: Package r-cran-ggrepel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reticulate; however: Package r-cran-reticulate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-multiassayexperiment; however: Package r-bioc-multiassayexperiment is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-openssl-dev{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblerc4{a} libllvm17{a} liblwp-mediatypes-perl{a} liblzf1{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline-dev{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunwind8{a} liburi-perl{a} libvariable-magic-perl{a} libvulkan1{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft2{a} libxkbfile1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6{a} libxxf86vm1{a} libz3-4{a} littler{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-h5py{a} python3-h5py-serial{a} python3-joblib{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-tz{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocbaseutils{a} r-bioc-biocgenerics{a} r-bioc-delayedarray{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-matrixgenerics{a} r-bioc-multiassayexperiment{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-sparsearray{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-backports{a} r-cran-beeswarm{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-broom{a} r-cran-broom.helpers{a} r-cran-cli{a} r-cran-clipr{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-corrplot{a} r-cran-cowplot{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-fansi{a} r-cran-farver{a} r-cran-forcats{a} r-cran-foreach{a} r-cran-generics{a} r-cran-ggally{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-ggrepel{a} r-cran-ggstats{a} r-cran-glue{a} r-cran-gtable{a} r-cran-haven{a} r-cran-here{a} r-cran-hms{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-labelled{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-patchwork{a} r-cran-pheatmap{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-rcurl{a} r-cran-readr{a} r-cran-reshape2{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tzdb{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridislite{a} r-cran-vroom{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} x11-xkb-utils{a} xauth{a} xdg-utils{a} xkb-data{a} xserver-common{a} xvfb{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx mesa-vulkan-drivers psmisc publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-psutil python3-pytest python3-simplejson python3-tables r-cran-base64enc r-cran-bench r-cran-brio r-cran-brms r-cran-broom.mixed r-cran-cairo r-cran-callr r-cran-caret r-cran-cmprsk r-cran-covr r-cran-crosstalk r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-digest r-cran-effects r-cran-emmeans r-cran-formattable r-cran-fs r-cran-gam r-cran-gee r-cran-geepack r-cran-geosphere r-cran-ggeffects r-cran-ggforce r-cran-glmmtmb r-cran-gridextra r-cran-gridgraphics r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-igraph r-cran-intergraph r-cran-itertools r-cran-knitr r-cran-lavaan r-cran-lintr r-cran-lme4 r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mice r-cran-mlbench r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-network r-cran-nnet r-cran-ordinal r-cran-parameters r-cran-pkgdown r-cran-pkgload r-cran-plm r-cran-processx r-cran-profvis r-cran-ps r-cran-pscl r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-ragg r-cran-reshape r-cran-rmarkdown r-cran-rmysql r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rsqlite r-cran-rstanarm r-cran-rstudioapi r-cran-runit r-cran-sf r-cran-sna r-cran-snakecase r-cran-spelling r-cran-survey r-cran-survival r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vdiffr r-cran-venndiagram r-cran-vgam r-cran-vioplot r-cran-waldo r-cran-whoami r-cran-xml r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs xfonts-base 0 packages upgraded, 370 newly installed, 0 to remove and 0 not upgraded. Need to get 288 MB of archives. After unpacking 826 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.8-1 [802 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.5.0-2+b2 [80.2 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.8-1 [1707 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.6-1 [26.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-1 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-3 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libreadline8 armhf 8.2-3+b1 [144 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.8-1 [1709 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.8-1 [597 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.6-1 [9224 B] Get: 13 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.6-1 [26.2 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.2-1 [793 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.2-1 [1845 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf openssl armhf 3.1.5-1 [1208 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf ca-certificates all 20240203 [158 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 44 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf python3-distutils all 3.11.5-1 [131 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 68.1.2-2 [468 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20240401 [107 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf zip armhf 3.0-13 [218 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf unzip armhf 6.0-28 [152 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 61 http://deb.debian.org/debian trixie/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libpng16-16 armhf 1.6.43-1 [262 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b1 [371 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1 [735 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.0-1+b1 [441 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-4+b1 [18.2 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-4+b1 [50.1 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5+b3 [158 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.59.0-1 [62.0 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libssh2-1 armhf 1.11.0-4 [197 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libcurl4 armhf 8.5.0-2 [383 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libglib2.0-0 armhf 2.78.4-1 [1281 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-2+b2 [143 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240201-3 [263 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf fontconfig armhf 2.15.0-1.1 [461 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 8.3.0-2 [2155 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libthai-data all 0.1.29-2 [168 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libdatrie1 armhf 0.2.13-3 [34.4 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libthai0 armhf 0.1.29-2 [45.8 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libpango-1.0-0 armhf 1.52.0+ds-1 [192 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libpangoft2-1.0-0 armhf 1.52.0+ds-1 [41.8 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libpangocairo-1.0-0 armhf 1.52.0+ds-1 [31.2 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [928 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.3.2-0.4 [105 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.3.2-0.4 [261 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-4 [301 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libxft2 armhf 2.3.6-1+b1 [46.4 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23 [252 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libtk8.6 armhf 8.6.14-1 [693 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf r-base-core armhf 4.3.2-1 [26.4 MB] Get: 119 http://deb.debian.org/debian trixie/main armhf libgfortran-13-dev armhf 13.2.0-13 [306 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf gfortran-13-arm-linux-gnueabihf armhf 13.2.0-13 [8193 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf gfortran-13 armhf 13.2.0-13 [10.5 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf gfortran-arm-linux-gnueabihf armhf 4:13.2.0-7 [1288 B] Get: 123 http://deb.debian.org/debian trixie/main armhf gfortran armhf 4:13.2.0-7 [1432 B] Get: 124 http://deb.debian.org/debian trixie/main armhf libblas-dev armhf 3.12.0-3 [119 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf liblapack-dev armhf 3.12.0-3 [1903 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.4+20240113-1 [81.8 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libncurses-dev armhf 6.4+20240113-1 [309 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libreadline-dev armhf 8.2-3+b1 [137 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2+b2 [260 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf libjpeg-dev armhf 1:2.1.5-2+b2 [72.1 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libpcre2-16-0 armhf 10.42-4+b1 [212 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf libpcre2-32-0 armhf 10.42-4+b1 [203 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libpcre2-posix3 armhf 10.42-4+b1 [55.3 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf libpcre2-dev armhf 10.42-4+b1 [668 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf libpng-dev armhf 1.6.43-1 [344 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf libbz2-dev armhf 1.0.8-5.1 [28.3 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf liblzma-dev armhf 5.6.1+really5.4.5-1 [281 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-4+b1 [185 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-4+b1 [10.1 MB] Get: 141 http://deb.debian.org/debian trixie/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf xauth armhf 1:1.1.2-1 [33.2 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-1+b2 [31.9 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-1+b2 [28.9 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-1+b2 [26.2 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf pkg-config armhf 1.8.1-1+b2 [14.0 kB] Get: 147 http://deb.debian.org/debian trixie/main armhf r-base-dev all 4.3.2-1 [4504 B] Get: 148 http://deb.debian.org/debian trixie/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf libswitch-perl all 2.17-3 [20.3 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf libclone-perl armhf 0.46-1+b1 [13.2 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf libhttp-date-perl all 6.06-1 [10.7 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf liburi-perl all 5.28-1 [98.6 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf libhttp-message-perl all 6.45-1 [82.0 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf libparams-util-perl armhf 1.102-2+b2 [23.3 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf libb-hooks-op-check-perl armhf 0.22-2+b2 [10.3 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf libdevel-callchecker-perl armhf 0.008-2+b1 [14.9 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf libparams-classify-perl armhf 0.015-2+b2 [21.3 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 167 http://deb.debian.org/debian trixie/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 169 http://deb.debian.org/debian trixie/main armhf libclass-load-perl all 0.25-2 [15.3 kB] Get: 170 http://deb.debian.org/debian trixie/main armhf libclass-load-xs-perl armhf 0.10-2+b2 [13.8 kB] Get: 171 http://deb.debian.org/debian trixie/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 172 http://deb.debian.org/debian trixie/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 173 http://deb.debian.org/debian trixie/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 174 http://deb.debian.org/debian trixie/main armhf libclass-c3-perl all 0.35-2 [21.0 kB] Get: 175 http://deb.debian.org/debian trixie/main armhf libmro-compat-perl all 0.15-2 [11.8 kB] Get: 176 http://deb.debian.org/debian trixie/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 177 http://deb.debian.org/debian trixie/main armhf libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 178 http://deb.debian.org/debian trixie/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 179 http://deb.debian.org/debian trixie/main armhf libeval-closure-perl all 0.14-3 [11.2 kB] Get: 180 http://deb.debian.org/debian trixie/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 181 http://deb.debian.org/debian trixie/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 182 http://deb.debian.org/debian trixie/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 183 http://deb.debian.org/debian trixie/main armhf libpackage-stash-xs-perl armhf 0.30-1+b2 [18.4 kB] Get: 184 http://deb.debian.org/debian trixie/main armhf libmoose-perl armhf 2.2207-1 [764 kB] Get: 185 http://deb.debian.org/debian trixie/main armhf libvariable-magic-perl armhf 0.63-1+b2 [41.4 kB] Get: 186 http://deb.debian.org/debian trixie/main armhf libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 187 http://deb.debian.org/debian trixie/main armhf libsub-identify-perl armhf 0.14-3+b1 [10.8 kB] Get: 188 http://deb.debian.org/debian trixie/main armhf libsub-name-perl armhf 0.27-1+b1 [12.0 kB] Get: 189 http://deb.debian.org/debian trixie/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 190 http://deb.debian.org/debian trixie/main armhf libcurl3-gnutls armhf 8.5.0-2 [378 kB] Get: 191 http://deb.debian.org/debian trixie/main armhf libwww-curl-perl armhf 4.17-10+b1 [56.2 kB] Get: 192 http://deb.debian.org/debian trixie/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 193 http://deb.debian.org/debian trixie/main armhf dh-r all 20231212 [42.2 kB] Get: 194 http://deb.debian.org/debian trixie/main armhf hdf5-helpers armhf 1.10.10+repack-3+b1 [23.5 kB] Get: 195 http://deb.debian.org/debian trixie/main armhf libaec0 armhf 1.1.3-1 [21.5 kB] Get: 196 http://deb.debian.org/debian trixie/main armhf libsz2 armhf 1.1.3-1 [7724 B] Get: 197 http://deb.debian.org/debian trixie/main armhf libaec-dev armhf 1.1.3-1 [18.8 kB] Get: 198 http://deb.debian.org/debian trixie/main armhf libsnappy1v5 armhf 1.1.10-1+b1 [25.2 kB] Get: 199 http://deb.debian.org/debian trixie/main armhf libblosc1 armhf 1.21.5+ds-1+b1 [37.2 kB] Get: 200 http://deb.debian.org/debian trixie/main armhf libcurl4-openssl-dev armhf 8.5.0-2 [495 kB] Get: 201 http://deb.debian.org/debian trixie/main armhf libdrm-common all 2.4.120-2 [7688 B] Get: 202 http://deb.debian.org/debian trixie/main armhf libdrm2 armhf 2.4.120-2 [33.8 kB] Get: 203 http://deb.debian.org/debian trixie/main armhf libdrm-amdgpu1 armhf 2.4.120-2 [20.0 kB] Get: 204 http://deb.debian.org/debian trixie/main armhf libdrm-nouveau2 armhf 2.4.120-2 [16.9 kB] Get: 205 http://deb.debian.org/debian trixie/main armhf libdrm-radeon1 armhf 2.4.120-2 [19.5 kB] Get: 206 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20230828-1 [76.8 kB] Get: 207 http://deb.debian.org/debian trixie/main armhf libfontenc1 armhf 1:1.1.8-1 [20.6 kB] Get: 208 http://deb.debian.org/debian trixie/main armhf libglvnd0 armhf 1.7.0-1 [52.3 kB] Get: 209 http://deb.debian.org/debian trixie/main armhf libglapi-mesa armhf 23.3.5-1 [42.5 kB] Get: 210 http://deb.debian.org/debian trixie/main armhf libx11-xcb1 armhf 2:1.8.7-1 [231 kB] Get: 211 http://deb.debian.org/debian trixie/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB] Get: 212 http://deb.debian.org/debian trixie/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB] Get: 213 http://deb.debian.org/debian trixie/main armhf libxcb-glx0 armhf 1.15-1 [120 kB] Get: 214 http://deb.debian.org/debian trixie/main armhf libxcb-present0 armhf 1.15-1 [105 kB] Get: 215 http://deb.debian.org/debian trixie/main armhf libxcb-randr0 armhf 1.15-1 [116 kB] Get: 216 http://deb.debian.org/debian trixie/main armhf libxcb-sync1 armhf 1.15-1 [108 kB] Get: 217 http://deb.debian.org/debian trixie/main armhf libxcb-xfixes0 armhf 1.15-1 [110 kB] Get: 218 http://deb.debian.org/debian trixie/main armhf libxfixes3 armhf 1:6.0.0-2 [21.1 kB] Get: 219 http://deb.debian.org/debian trixie/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 220 http://deb.debian.org/debian trixie/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 221 http://deb.debian.org/debian trixie/main armhf libvulkan1 armhf 1.3.275.0-1 [109 kB] Get: 222 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 223 http://deb.debian.org/debian trixie/main armhf libllvm17 armhf 1:17.0.6-5 [21.6 MB] Get: 224 http://deb.debian.org/debian trixie/main armhf libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 225 http://deb.debian.org/debian trixie/main armhf libsensors5 armhf 1:3.6.0-9 [31.9 kB] Get: 226 http://deb.debian.org/debian trixie/main armhf libgl1-mesa-dri armhf 23.3.5-1 [6405 kB] Get: 227 http://deb.debian.org/debian trixie/main armhf libglx-mesa0 armhf 23.3.5-1 [130 kB] Get: 228 http://deb.debian.org/debian trixie/main armhf libglx0 armhf 1.7.0-1 [32.2 kB] Get: 229 http://deb.debian.org/debian trixie/main armhf libgl1 armhf 1.7.0-1 [90.8 kB] Get: 230 http://deb.debian.org/debian trixie/main armhf libhdf5-103-1 armhf 1.10.10+repack-3+b1 [1190 kB] Get: 231 http://deb.debian.org/debian trixie/main armhf libhdf5-cpp-103-1 armhf 1.10.10+repack-3+b1 [121 kB] Get: 232 http://deb.debian.org/debian trixie/main armhf libhdf5-fortran-102 armhf 1.10.10+repack-3+b1 [78.5 kB] Get: 233 http://deb.debian.org/debian trixie/main armhf libhdf5-hl-100 armhf 1.10.10+repack-3+b1 [61.1 kB] Get: 234 http://deb.debian.org/debian trixie/main armhf libhdf5-hl-fortran-100 armhf 1.10.10+repack-3+b1 [34.7 kB] Get: 235 http://deb.debian.org/debian trixie/main armhf libhdf5-hl-cpp-100 armhf 1.10.10+repack-3+b1 [20.8 kB] Get: 236 http://deb.debian.org/debian trixie/main armhf libssl-dev armhf 3.1.5-1 [2152 kB] Get: 237 http://deb.debian.org/debian trixie/main armhf libhdf5-dev armhf 1.10.10+repack-3+b1 [2611 kB] Get: 238 http://deb.debian.org/debian trixie/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b1 [25.5 kB] Get: 239 http://deb.debian.org/debian trixie/main armhf liblzf1 armhf 3.6-4 [9156 B] Get: 240 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.2-1 [1800 kB] Get: 241 http://deb.debian.org/debian trixie/main armhf libunwind8 armhf 1.6.2-3 [43.3 kB] Get: 242 http://deb.debian.org/debian trixie/main armhf libxmu6 armhf 2:1.1.3-3 [52.6 kB] Get: 243 http://deb.debian.org/debian trixie/main armhf libxpm4 armhf 1:3.5.17-1 [49.5 kB] Get: 244 http://deb.debian.org/debian trixie/main armhf libxaw7 armhf 2:1.0.14-1 [167 kB] Get: 245 http://deb.debian.org/debian trixie/main armhf libxfont2 armhf 1:2.0.6-1 [120 kB] Get: 246 http://deb.debian.org/debian trixie/main armhf libxkbfile1 armhf 1:1.1.0-1 [67.2 kB] Get: 247 http://deb.debian.org/debian trixie/main armhf libxrandr2 armhf 2:1.5.4-1 [33.0 kB] Get: 248 http://deb.debian.org/debian trixie/main armhf r-cran-littler armhf 0.3.19-1 [89.0 kB] Get: 249 http://deb.debian.org/debian trixie/main armhf littler all 0.3.19-1 [15.4 kB] Get: 250 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.2-1 [653 kB] Get: 251 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.11.6-1 [1060 B] Get: 252 http://deb.debian.org/debian trixie/main armhf python3-six all 1.16.0-6 [16.3 kB] Get: 253 http://deb.debian.org/debian trixie/main armhf python3-dateutil all 2.9.0-2 [79.4 kB] Get: 254 http://deb.debian.org/debian trixie/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 255 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.24.2-2 [4016 kB] Get: 256 http://deb.debian.org/debian trixie/main armhf python3-h5py-serial armhf 3.10.0-1 [1261 kB] Get: 257 http://deb.debian.org/debian trixie/main armhf python3-h5py all 3.10.0-1 [14.4 kB] Get: 258 http://deb.debian.org/debian trixie/main armhf python3-joblib all 1.3.2-2 [218 kB] Get: 259 http://deb.debian.org/debian trixie/main armhf python3-tz all 2024.1-2 [30.9 kB] Get: 260 http://deb.debian.org/debian trixie/main armhf python3-pandas-lib armhf 2.1.4+dfsg-5 [7000 kB] Get: 261 http://deb.debian.org/debian trixie/main armhf python3-pandas all 2.1.4+dfsg-5 [3015 kB] Get: 262 http://deb.debian.org/debian trixie/main armhf python3-scipy armhf 1.11.4-6 [16.9 MB] Get: 263 http://deb.debian.org/debian trixie/main armhf python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 264 http://deb.debian.org/debian trixie/main armhf python3-sklearn-lib armhf 1.4.1.post1+dfsg-1 [5564 kB] Get: 265 http://deb.debian.org/debian trixie/main armhf python3-sklearn all 1.4.1.post1+dfsg-1 [2246 kB] Get: 266 http://deb.debian.org/debian trixie/main armhf r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get: 267 http://deb.debian.org/debian trixie/main armhf r-bioc-biobase armhf 2.62.0-1 [2118 kB] Get: 268 http://deb.debian.org/debian trixie/main armhf r-bioc-biocbaseutils all 1.4.0+dfsg-1 [30.9 kB] Get: 269 http://deb.debian.org/debian trixie/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB] Get: 270 http://deb.debian.org/debian trixie/main armhf r-cran-matrix armhf 1.6-5-1 [3707 kB] Get: 271 http://deb.debian.org/debian trixie/main armhf r-cran-matrixstats armhf 1.2.0-1 [471 kB] Get: 272 http://deb.debian.org/debian trixie/main armhf r-bioc-matrixgenerics all 1.14.0-1 [407 kB] Get: 273 http://deb.debian.org/debian trixie/main armhf r-bioc-s4vectors armhf 0.40.2+dfsg-1 [2055 kB] Get: 274 http://deb.debian.org/debian trixie/main armhf r-bioc-iranges armhf 2.36.0-1 [2250 kB] Get: 275 http://deb.debian.org/debian trixie/main armhf r-cran-abind all 1.4-5-2 [64.6 kB] Get: 276 http://deb.debian.org/debian trixie/main armhf r-cran-crayon all 1.5.2-1 [165 kB] Get: 277 http://deb.debian.org/debian trixie/main armhf r-bioc-s4arrays armhf 1.2.0+dfsg-1 [502 kB] Get: 278 http://deb.debian.org/debian trixie/main armhf r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B] Get: 279 http://deb.debian.org/debian trixie/main armhf r-bioc-xvector armhf 0.42.0-1 [615 kB] Get: 280 http://deb.debian.org/debian trixie/main armhf r-bioc-sparsearray armhf 1.2.4+dfsg-1 [1179 kB] Get: 281 http://deb.debian.org/debian trixie/main armhf r-bioc-delayedarray armhf 0.28.0+dfsg-1 [1792 kB] Get: 282 http://deb.debian.org/debian trixie/main armhf r-cran-bitops armhf 1.0-7-1 [30.0 kB] Get: 283 http://deb.debian.org/debian trixie/main armhf r-cran-rcurl armhf 1.98-1.14+dfsg-1 [783 kB] Get: 284 http://deb.debian.org/debian trixie/main armhf r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] Get: 285 http://deb.debian.org/debian trixie/main armhf r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3848 kB] Get: 286 http://deb.debian.org/debian trixie/main armhf r-bioc-genomicranges armhf 1.54.1+dfsg-1 [1824 kB] Get: 287 http://deb.debian.org/debian trixie/main armhf r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1139 kB] Get: 288 http://deb.debian.org/debian trixie/main armhf r-cran-cli armhf 3.6.2-1 [1315 kB] Get: 289 http://deb.debian.org/debian trixie/main armhf r-cran-generics all 0.1.3-1 [81.4 kB] Get: 290 http://deb.debian.org/debian trixie/main armhf r-cran-glue armhf 1.7.0-1 [156 kB] Get: 291 http://deb.debian.org/debian trixie/main armhf r-cran-rlang armhf 1.1.3-1 [1661 kB] Get: 292 http://deb.debian.org/debian trixie/main armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 293 http://deb.debian.org/debian trixie/main armhf r-cran-magrittr armhf 2.0.3-1 [201 kB] Get: 294 http://deb.debian.org/debian trixie/main armhf r-cran-fansi armhf 1.0.5-1 [612 kB] Get: 295 http://deb.debian.org/debian trixie/main armhf r-cran-utf8 armhf 1.2.4-1 [129 kB] Get: 296 http://deb.debian.org/debian trixie/main armhf r-cran-vctrs armhf 0.6.5-1 [1345 kB] Get: 297 http://deb.debian.org/debian trixie/main armhf r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 298 http://deb.debian.org/debian trixie/main armhf r-cran-r6 all 2.5.1-1 [105 kB] Get: 299 http://deb.debian.org/debian trixie/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 300 http://deb.debian.org/debian trixie/main armhf r-cran-tibble armhf 3.2.1+dfsg-2 [420 kB] Get: 301 http://deb.debian.org/debian trixie/main armhf r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get: 302 http://deb.debian.org/debian trixie/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [219 kB] Get: 303 http://deb.debian.org/debian trixie/main armhf r-cran-dplyr armhf 1.1.4-1 [1521 kB] Get: 304 http://deb.debian.org/debian trixie/main armhf r-cran-purrr armhf 1.0.2-1 [505 kB] Get: 305 http://deb.debian.org/debian trixie/main armhf r-cran-stringi armhf 1.8.3-1 [837 kB] Get: 306 http://deb.debian.org/debian trixie/main armhf r-cran-stringr all 1.5.1-1 [296 kB] Get: 307 http://deb.debian.org/debian trixie/main armhf r-cran-cpp11 all 0.4.7-1 [219 kB] Get: 308 http://deb.debian.org/debian trixie/main armhf r-cran-tidyr armhf 1.3.1-1 [1159 kB] Get: 309 http://deb.debian.org/debian trixie/main armhf r-bioc-multiassayexperiment all 1.28.0+dfsg-1 [1069 kB] Get: 310 http://deb.debian.org/debian trixie/main armhf r-bioc-rhdf5lib armhf 1.24.2+dfsg-1 [103 kB] Get: 311 http://deb.debian.org/debian trixie/main armhf r-bioc-rhdf5filters armhf 1.14.1+dfsg-3 [126 kB] Get: 312 http://deb.debian.org/debian trixie/main armhf r-bioc-rhdf5 armhf 2.46.1+dfsg-1 [841 kB] Get: 313 http://deb.debian.org/debian trixie/main armhf r-cran-backports armhf 1.4.1-1 [100 kB] Get: 314 http://deb.debian.org/debian trixie/main armhf r-cran-beeswarm armhf 0.4.0-1+b1 [81.8 kB] Get: 315 http://deb.debian.org/debian trixie/main armhf r-cran-bit armhf 4.0.5-1 [1060 kB] Get: 316 http://deb.debian.org/debian trixie/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB] Get: 317 http://deb.debian.org/debian trixie/main armhf r-cran-ellipsis armhf 0.3.2-2 [34.7 kB] Get: 318 http://deb.debian.org/debian trixie/main armhf r-cran-broom all 1.0.5+dfsg-1 [1768 kB] Get: 319 http://deb.debian.org/debian trixie/main armhf r-cran-forcats all 1.0.0-1 [413 kB] Get: 320 http://deb.debian.org/debian trixie/main armhf r-cran-hms all 1.1.3-1 [104 kB] Get: 321 http://deb.debian.org/debian trixie/main armhf r-cran-clipr all 0.8.0-1 [53.0 kB] Get: 322 http://deb.debian.org/debian trixie/main armhf r-cran-tzdb armhf 0.4.0-2 [489 kB] Get: 323 http://deb.debian.org/debian trixie/main armhf r-cran-prettyunits all 1.2.0-1 [162 kB] Get: 324 http://deb.debian.org/debian trixie/main armhf r-cran-progress all 1.2.3-1 [93.0 kB] Get: 325 http://deb.debian.org/debian trixie/main armhf r-cran-vroom armhf 1.6.5-1 [796 kB] Get: 326 http://deb.debian.org/debian trixie/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB] Get: 327 http://deb.debian.org/debian trixie/main armhf r-cran-rcpp armhf 1.0.12-1 [2054 kB] Get: 328 http://deb.debian.org/debian trixie/main armhf r-cran-readr armhf 2.1.5-1 [737 kB] Get: 329 http://deb.debian.org/debian trixie/main armhf r-cran-haven armhf 2.5.4-1 [319 kB] Get: 330 http://deb.debian.org/debian trixie/main armhf r-cran-labelled all 2.12.0-2 [297 kB] Get: 331 http://deb.debian.org/debian trixie/main armhf r-cran-broom.helpers all 1.14.0-2 [549 kB] Get: 332 http://deb.debian.org/debian trixie/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB] Get: 333 http://deb.debian.org/debian trixie/main armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1688 kB] Get: 334 http://deb.debian.org/debian trixie/main armhf r-cran-corrplot all 0.92-1 [131 kB] Get: 335 http://deb.debian.org/debian trixie/main armhf r-cran-gtable all 0.3.4+dfsg-1 [221 kB] Get: 336 http://deb.debian.org/debian trixie/main armhf r-cran-isoband armhf 0.2.7-1 [1610 kB] Get: 337 http://deb.debian.org/debian trixie/main armhf r-cran-mass armhf 7.3-60.0.1-1 [1116 kB] Get: 338 http://deb.debian.org/debian trixie/main armhf r-cran-nlme armhf 3.1.164-1 [2270 kB] Get: 339 http://deb.debian.org/debian trixie/main armhf r-cran-mgcv armhf 1.9-1-1 [3191 kB] Get: 340 http://deb.debian.org/debian trixie/main armhf r-cran-farver armhf 2.1.1-2 [1397 kB] Get: 341 http://deb.debian.org/debian trixie/main armhf r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 342 http://deb.debian.org/debian trixie/main armhf r-cran-munsell all 0.5.0-2 [236 kB] Get: 343 http://deb.debian.org/debian trixie/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 344 http://deb.debian.org/debian trixie/main armhf r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 345 http://deb.debian.org/debian trixie/main armhf r-cran-scales all 1.3.0-1 [677 kB] Get: 346 http://deb.debian.org/debian trixie/main armhf r-cran-ggplot2 all 3.4.4+dfsg-1 [3405 kB] Get: 347 http://deb.debian.org/debian trixie/main armhf r-cran-cowplot all 1.1.3+dfsg-1 [638 kB] Get: 348 http://deb.debian.org/debian trixie/main armhf r-cran-iterators all 1.0.14-1 [337 kB] Get: 349 http://deb.debian.org/debian trixie/main armhf r-cran-foreach all 1.5.2-1 [122 kB] Get: 350 http://deb.debian.org/debian trixie/main armhf r-cran-doparallel all 1.0.17-1 [188 kB] Get: 351 http://deb.debian.org/debian trixie/main armhf r-cran-patchwork all 1.2.0-1 [3345 kB] Get: 352 http://deb.debian.org/debian trixie/main armhf r-cran-ggstats all 0.5.1-2 [828 kB] Get: 353 http://deb.debian.org/debian trixie/main armhf r-cran-plyr armhf 1.8.9-1 [829 kB] Get: 354 http://deb.debian.org/debian trixie/main armhf r-cran-ggally all 2.2.1-1 [2022 kB] Get: 355 http://deb.debian.org/debian trixie/main armhf r-cran-vipor all 0.4.7-1 [4509 kB] Get: 356 http://deb.debian.org/debian trixie/main armhf r-cran-ggbeeswarm all 0.7.2-1 [1738 kB] Get: 357 http://deb.debian.org/debian trixie/main armhf r-cran-ggrepel armhf 0.9.5-1 [246 kB] Get: 358 http://deb.debian.org/debian trixie/main armhf r-cran-rprojroot all 2.0.4-1 [124 kB] Get: 359 http://deb.debian.org/debian trixie/main armhf r-cran-here all 1.0.1-2 [48.7 kB] Get: 360 http://deb.debian.org/debian trixie/main armhf r-cran-jsonlite armhf 1.8.8+dfsg-1 [439 kB] Get: 361 http://deb.debian.org/debian trixie/main armhf r-cran-pheatmap all 1.0.12-2 [77.9 kB] Get: 362 http://deb.debian.org/debian trixie/main armhf r-cran-png armhf 0.1-8-1 [40.1 kB] Get: 363 http://deb.debian.org/debian trixie/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB] Get: 364 http://deb.debian.org/debian trixie/main armhf r-cran-rcpptoml armhf 0.2.2+dfsg-1 [99.6 kB] Get: 365 http://deb.debian.org/debian trixie/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB] Get: 366 http://deb.debian.org/debian trixie/main armhf r-cran-reticulate armhf 1.35.0+dfsg-1 [1454 kB] Get: 367 http://deb.debian.org/debian trixie/main armhf x11-xkb-utils armhf 7.7+8 [145 kB] Get: 368 http://deb.debian.org/debian trixie/main armhf xkb-data all 2.41-2 [795 kB] Get: 369 http://deb.debian.org/debian trixie/main armhf xserver-common all 2:21.1.11-2 [2388 kB] Get: 370 http://deb.debian.org/debian trixie/main armhf xvfb armhf 2:21.1.11-2 [3020 kB] Fetched 288 MB in 22s (13.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.8-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-2+b2_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-2+b2) ... Selecting previously unselected package python3.11-minimal. 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Setting up libdatrie1:armhf (0.2.13-3) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libclone-perl:armhf (0.46-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b1) ... Setting up libglib2.0-0:armhf (2.78.4-1) ... No schema files found: doing nothing. Setting up libglvnd0:armhf (1.7.0-1) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:armhf (1.1.0-2+b3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libpython3.12-minimal:armhf (3.12.2-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libsensors-config (1:3.6.0-9) ... Setting up libnghttp2-14:armhf (1.59.0-1) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up libdeflate0:armhf (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up xkb-data (2.41-2) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-2+b1) ... Setting up libunwind8:armhf (1.6.2-3) ... Setting up libjbig0:armhf (2.1-6.1+b1) ... Setting up libpcre2-16-0:armhf (10.42-4+b1) ... Setting up libaec0:armhf (1.1.3-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsnappy1v5:armhf (1.1.10-1+b1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-4+b1) ... Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Apr 16 11:01:07 UTC 2024. Universal Time is now: Tue Apr 16 11:01:07 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-13) ... Setting up libfontenc1:armhf (1:1.1.8-1) ... Setting up libpackage-stash-xs-perl:armhf (0.30-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1+b2) ... Setting up libpcre2-32-0:armhf (10.42-4+b1) ... Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-1+b2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2+b2) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2+b2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.4+20240113-1) ... Setting up liblzf1:armhf (3.6-4) ... Setting up libfribidi0:armhf (1.0.13-3+b1) ... Setting up libproc2-0:armhf (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:armhf (3.1.5-1) ... Setting up libpng16-16:armhf (1.6.43-1) ... Setting up libvariable-magic-perl (0.63-1+b2) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:armhf (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up libb-hooks-op-check-perl:armhf (0.22-2+b2) ... Setting up icu-devtools (72.1-4+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libsensors5:armhf (1:3.6.0-9) ... Setting up libglapi-mesa:armhf (23.3.5-1) ... Setting up libparams-util-perl (1.102-2+b2) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-4+b1) ... Setting up libgfortran5:armhf (14-20240201-3) ... Setting up libvulkan1:armhf (1.3.275.0-1) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:armhf (1.3.2-0.4) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:armhf (5.6.1+really5.4.5-1) ... Setting up libsub-name-perl:armhf (0.27-1+b1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3+b1) ... Setting up libpcre2-posix3:armhf (10.42-4+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up libtiff6:armhf (4.5.1+git230720-4) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libblosc1:armhf (1.21.5+ds-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libssh2-1:armhf (1.11.0-4) ... Setting up netbase (6.4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libgfortran-13-dev:armhf (13.2.0-13) ... Setting up openssl (3.1.5-1) ... Setting up libbsd0:armhf (0.12.2-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up readline-common (8.2-3) ... Setting up libicu-dev:armhf (72.1-4+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.28-1) ... Setting up libblas-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsz2:armhf (1.1.3-1) ... Setting up dctrl-tools (2.24-3) ... Setting up libbz2-dev:armhf (1.0.8-5.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gfortran-13-arm-linux-gnueabihf (13.2.0-13) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libncurses-dev:armhf (6.4+20240113-1) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libxcb-xfixes0:armhf (1.15-1) ... Setting up libpcre2-dev:armhf (10.42-4+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libxcb-glx0:armhf (1.15-1) ... Setting up libedit2:armhf (3.1-20230828-1) ... Setting up libreadline8:armhf (8.2-3+b1) ... Setting up libpng-dev:armhf (1.6.43-1) ... Setting up libaec-dev:armhf (1.1.3-1) ... Setting up libjpeg-dev:armhf (1:2.1.5-2+b2) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:armhf (8.2-3+b1) ... Setting up libdevel-callchecker-perl:armhf (0.008-2+b1) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5+b3) ... Setting up gfortran-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up pkgconf:armhf (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:armhf (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:armhf (2.13.2+dfsg-1+b1) ... Setting up libxcb-sync1:armhf (1.15-1) ... Setting up gfortran-13 (13.2.0-13) ... Setting up liblapack-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:armhf (1.8.1-1+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up libxcb-dri2-0:armhf (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:armhf (2.4.120-2) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libxcb-randr0:armhf (1.15-1) ... Setting up libcurl4:armhf (8.5.0-2) ... Setting up libx11-6:armhf (2:1.8.7-1) ... Setting up libharfbuzz0b:armhf (8.3.0-2) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up libxkbfile1:armhf (1:1.1.0-1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libllvm17:armhf (1:17.0.6-5) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libxfont2:armhf (1:2.0.6-1) ... Setting up libxmuu1:armhf (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1+b1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libdrm-amdgpu1:armhf (2.4.120-2) ... Setting up libxcb-dri3-0:armhf (1.15-1) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up libx11-xcb1:armhf (2:1.8.7-1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.120-2) ... Setting up libpython3.12-stdlib:armhf (3.12.2-1) ... Setting up libxpm4:armhf (1:3.5.17-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up libdrm-radeon1:armhf (2.4.120-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libparams-classify-perl:armhf (0.015-2+b2) ... Setting up libpango-1.0-0:armhf (1.52.0+ds-1) ... Setting up libgl1-mesa-dri:armhf (23.3.5-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:armhf (8.5.0-2) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.18.0-1+b1) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxfixes3:armhf (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:armhf (8.5.0-2) ... Setting up libxrandr2:armhf (2:1.5.4-1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:armhf (1:1.2.1-1.1) ... Setting up libhdf5-103-1:armhf (1.10.10+repack-3+b1) ... Setting up xauth (1:1.1.2-1) ... Setting up libhdf5-cpp-103-1:armhf (1.10.10+repack-3+b1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.52.0+ds-1) ... Setting up libpangocairo-1.0-0:armhf (1.52.0+ds-1) ... Setting up libpython3-stdlib:armhf (3.11.6-1) ... Setting up libhdf5-hl-100:armhf (1.10.10+repack-3+b1) ... Setting up python3.11 (3.11.8-1) ... Setting up libxft2:armhf (2.3.6-1+b1) ... Setting up libxmu6:armhf (2:1.1.3-3) ... Setting up libglx-mesa0:armhf (23.3.5-1) ... Setting up libglx0:armhf (1.7.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:armhf (8.6.14-1) ... Setting up libwww-curl-perl:armhf (4.17-10+b1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libxaw7:armhf (2:1.0.14-1) ... Setting up libclass-load-perl (0.25-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-decorator (5.1.1-5) ... Setting up libhdf5-hl-cpp-100:armhf (1.10.10+repack-3+b1) ... Setting up libgl1:armhf (1.7.0-1) ... Setting up r-base-core (4.3.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up libhdf5-fortran-102:armhf (1.10.10+repack-3+b1) ... Setting up r-cran-lattice (0.22-5-1) ... Setting up r-cran-nlme (3.1.164-1) ... Setting up r-cran-farver (2.1.1-2) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up libhdf5-hl-fortran-100:armhf (1.10.10+repack-3+b1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up libclass-load-xs-perl (0.10-2+b2) ... Setting up r-cran-clipr (0.8.0-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.3-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... Setting up r-cran-littler (0.3.19-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up r-cran-rcpp (1.0.12-1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up r-bioc-biocgenerics (0.48.1-2) ... Setting up r-cran-rlang (1.1.3-1) ... Setting up r-cran-matrixstats (1.2.0-1) ... Setting up r-base-dev (4.3.2-1) ... Setting up littler (0.3.19-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-joblib (1.3.2-2) ... Setting up r-bioc-matrixgenerics (1.14.0-1) ... Setting up r-cran-withr (3.0.0+dfsg-1) ... Setting up r-cran-backports (1.4.1-1) ... Setting up libmoose-perl:armhf (2.2207-1) ... Setting up r-cran-vipor (0.4.7-1) ... Setting up r-cran-generics (0.1.3-1) ... Setting up x11-xkb-utils (7.7+8) ... Setting up r-cran-beeswarm (0.4.0-1+b1) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-abind (1.4-5-2) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-prettyunits (1.2.0-1) ... Setting up r-cran-fansi (1.0.5-1) ... Setting up r-cran-mass (7.3-60.0.1-1) ... Setting up python3-all (3.11.6-1) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-bit (4.0.5-1) ... Setting up r-cran-cli (3.6.2-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-rprojroot (2.0.4-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... Setting up r-cran-png (0.1-8-1) ... Setting up r-bioc-biobase (2.62.0-1) ... Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... Setting up r-cran-corrplot (0.92-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up r-cran-stringi (1.8.3-1) ... Setting up r-cran-cpp11 (0.4.7-1) ... Setting up r-cran-plyr (1.8.9-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up libhdf5-dev (1.10.10+repack-3+b1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-gtable (0.3.4+dfsg-1) ... Setting up r-cran-matrix (1.6-5-1) ... Setting up r-cran-here (1.0.1-2) ... Setting up r-cran-doparallel (1.0.17-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up r-cran-rcpptoml (0.2.2+dfsg-1) ... Setting up r-cran-mgcv (1.9-1-1) ... Setting up r-bioc-biocbaseutils (1.4.0+dfsg-1) ... Setting up r-bioc-iranges (2.36.0-1) ... Setting up xserver-common (2:21.1.11-2) ... Setting up r-cran-tzdb (0.4.0-2) ... Setting up r-cran-reticulate (1.35.0+dfsg-1) ... Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up dh-python (6.20240401) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up python3-scipy (1.11.4-6) ... Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up xvfb (2:21.1.11-2) ... Setting up python3-pandas-lib:armhf (2.1.4+dfsg-5) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... Setting up python3-sklearn-lib:armhf (1.4.1.post1+dfsg-1) ... Setting up python3-h5py-serial (3.10.0-1) ... Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... Setting up r-cran-forcats (1.0.0-1) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up python3-pandas (2.1.4+dfsg-5) ... Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... Setting up r-cran-hms (1.1.3-1) ... Setting up r-cran-scales (1.3.0-1) ... Setting up python3-h5py (3.10.0-1) ... Setting up r-cran-purrr (1.0.2-1) ... Setting up python3-sklearn (1.4.1.post1+dfsg-1) ... Setting up r-bioc-xvector (0.42.0-1) ... Setting up r-cran-dplyr (1.1.4-1) ... Setting up dh-r (20231212) ... Setting up r-cran-progress (1.2.3-1) ... Setting up r-cran-pheatmap (1.0.12-2) ... Setting up r-cran-vroom (1.6.5-1) ... Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... Setting up r-cran-readr (2.1.5-1) ... Setting up r-cran-ggrepel (0.9.5-1) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-cran-ggbeeswarm (0.7.2-1) ... Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... Setting up r-cran-cowplot (1.1.3+dfsg-1) ... Setting up r-cran-patchwork (1.2.0-1) ... Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... Setting up r-cran-haven (2.5.4-1) ... Setting up r-bioc-multiassayexperiment (1.28.0+dfsg-1) ... Setting up r-cran-broom (1.0.5+dfsg-1) ... Setting up r-cran-labelled (2.12.0-2) ... Setting up r-cran-broom.helpers (1.14.0-2) ... Setting up r-cran-ggstats (0.5.1-2) ... Setting up r-cran-ggally (2.2.1-1) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/20537/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/20537/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-mofa_1.6.1+dfsg-12_source.changes dpkg-buildpackage: info: source package r-bioc-mofa dpkg-buildpackage: info: source version 1.6.1+dfsg-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf debian/python3-mofa.substvars mofapy.egg-info/ make[1]: Leaving directory '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy copying mofapy/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run copying mofapy/run/python_template.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run copying mofapy/run/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/entry_point.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/nongaussian_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/simulate.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/mixed_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/variational_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/multiview_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/BayesNet.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/build_model.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/init_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/distributions.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/utils.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/updates.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy copying mofapy/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run copying mofapy/run/python_template.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run copying mofapy/run/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/entry_point.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/nongaussian_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/simulate.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/mixed_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/variational_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/multiview_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/BayesNet.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/build_model.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/init_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/distributions.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/utils.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/updates.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg' dh_auto_install -O--buildsystem=R --sourcedirectory=/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg I: R Package: MOFA Version: 1.6.1 I: Building using R version 4.3.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 30 Nov 2023 18:06:19 +0100 mkdir -p /build/reproducible-path/r-bioc-mofa-1.6.1\+dfsg/debian/tmp/usr/lib/R/site-library xvfb-run --auto-servernum --server-num=20 -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" R CMD INSTALL -l /build/reproducible-path/r-bioc-mofa-1.6.1\+dfsg/debian/tmp/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 30 Nov 2023 18:06:19 +0100'" * installing *source* package 'MOFA' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Please use MOFA2 instead of MOFA. Package 'MOFA' is deprecated and will be removed from Bioconductor version 3.13. ** testing if installed package can be loaded from final location Warning: Please use MOFA2 instead of MOFA. Package 'MOFA' is deprecated and will be removed from Bioconductor version 3.13. ** testing if installed package keeps a record of temporary installation path * DONE (MOFA) rm -f /build/reproducible-path/r-bioc-mofa-1.6.1\+dfsg/debian/tmp/usr/lib/R/site-library/MOFA/LICENSE W: Ignoring specified R dependency: R (>= 3.5) I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:MOFAdata I: Using r-bioc-rhdf5 for Imports:rhdf5 I: Using r-cran-dplyr for Imports:dplyr I: Using r-cran-reshape2 for Imports:reshape2 I: Using r-cran-pheatmap for Imports:pheatmap I: Using r-cran-corrplot for Imports:corrplot I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-cran-ggbeeswarm for Imports:ggbeeswarm I: Using r-cran-scales for Imports:scales I: Using r-cran-ggally for Imports:GGally I: Using r-cran-rcolorbrewer by changing version to for Imports:RColorBrewer I: Using r-cran-cowplot for Imports:cowplot I: Using r-cran-ggrepel for Imports:ggrepel I: Using r-bioc-multiassayexperiment for Imports:MultiAssayExperiment I: Using r-bioc-biobase for Imports:Biobase I: Using r-cran-doparallel for Imports:doParallel I: Using r-cran-foreach for Imports:foreach I: Using r-cran-reticulate for Imports:reticulate I: BioConductor API version: r-api-bioc-3.18 I: Use r-bioc-mofa as Debian binary package for variables substitution find /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian -name "*.Rmd" | xargs -r chmod -x mv debian/tmp tmp-install dh_auto_install I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12 creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run/python_template.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/__pycache__ creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/entry_point.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/nongaussian_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/simulate.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/mixed_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/variational_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/multiview_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/BayesNet.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/build_model.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/init_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/distributions.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/utils.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/updates.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run/python_template.py to python_template.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/entry_point.py to entry_point.cpython-312.pyc /usr/lib/python3.12/dist-packages/mofapy/core/entry_point.py:41: SyntaxWarning: invalid escape sequence '\/' byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/nongaussian_nodes.py to nongaussian_nodes.cpython-312.pyc /usr/lib/python3.12/dist-packages/mofapy/core/nongaussian_nodes.py:144: SyntaxWarning: invalid escape sequence '\p' byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/simulate.py to simulate.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/mixed_nodes.py to mixed_nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/variational_nodes.py to variational_nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/multiview_nodes.py to multiview_nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/nodes.py to nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/BayesNet.py to BayesNet.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/build_model.py to build_model.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/init_nodes.py to init_nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/distributions.py to distributions.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/utils.py to utils.cpython-312.pyc /usr/lib/python3.12/dist-packages/mofapy/core/utils.py:178: SyntaxWarning: invalid escape sequence '\m' byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/updates.py to updates.cpython-312.pyc running install_egg_info running egg_info creating mofapy.egg-info writing mofapy.egg-info/PKG-INFO writing dependency_links to mofapy.egg-info/dependency_links.txt writing requirements to mofapy.egg-info/requires.txt writing top-level names to mofapy.egg-info/top_level.txt writing manifest file 'mofapy.egg-info/SOURCES.txt' reading manifest file 'mofapy.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'mofapy.egg-info/SOURCES.txt' Copying mofapy.egg-info to /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy-1.2.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11 creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run/python_template.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/__pycache__ creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/entry_point.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/nongaussian_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/simulate.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/mixed_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/variational_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/multiview_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/BayesNet.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/build_model.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/init_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/distributions.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/utils.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/updates.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run/python_template.py to python_template.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/entry_point.py to entry_point.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/nongaussian_nodes.py to nongaussian_nodes.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/simulate.py to simulate.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/mixed_nodes.py to mixed_nodes.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/variational_nodes.py to variational_nodes.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/multiview_nodes.py to multiview_nodes.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/nodes.py to nodes.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/BayesNet.py to BayesNet.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/build_model.py to build_model.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/init_nodes.py to init_nodes.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/distributions.py to distributions.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/updates.py to updates.cpython-311.pyc running install_egg_info running egg_info writing mofapy.egg-info/PKG-INFO writing dependency_links to mofapy.egg-info/dependency_links.txt writing requirements to mofapy.egg-info/requires.txt writing top-level names to mofapy.egg-info/top_level.txt reading manifest file 'mofapy.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'mofapy.egg-info/SOURCES.txt' Copying mofapy.egg-info to /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy-1.2.egg-info Skipping SOURCES.txt running install_scripts make[1]: Leaving directory '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides sklearn. Please add package that provides it to Build-Depends or add "sklearn python3-sklearn" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package r-bioc-mofa: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'r-bioc-mofa' in '../r-bioc-mofa_1.6.1+dfsg-12_all.deb'. dpkg-deb: building package 'python3-mofapy' in '../python3-mofapy_1.6.1+dfsg-12_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-mofa_1.6.1+dfsg-12_armhf.buildinfo dpkg-genchanges --build=binary -O../r-bioc-mofa_1.6.1+dfsg-12_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/20537/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/20537/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20537 and its subdirectories I: Current time: Wed Apr 17 01:08:24 +14 2024 I: pbuilder-time-stamp: 1713265704