I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 21 02:54:43 +14 2024 I: pbuilder-time-stamp: 1713617683 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parasail_2.6.2+dfsg-1.dsc] I: copying [./parasail_2.6.2+dfsg.orig.tar.xz] I: copying [./parasail_2.6.2+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Aug 17 11:57:54 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./parasail_2.6.2+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting parasail in parasail-2.6.2+dfsg dpkg-source: info: unpacking parasail_2.6.2+dfsg.orig.tar.xz dpkg-source: info: unpacking parasail_2.6.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-system-libs.patch dpkg-source: info: applying nonx86 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8898/tmp/hooks/D01_modify_environment starting debug: Running on ff4a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 20 12:55 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/8898/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/8898/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=954c4d4a32b04ac992532c50e3313c09 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=8898 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ugjl7WPS/pbuilderrc_USu7 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ugjl7WPS/b2 --logfile b2/build.log parasail_2.6.2+dfsg-1.dsc' SUDO_GID=113 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 20 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8898/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libhts-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 23.9 MB of archives. After unpacking 88.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf d-shlibs all 0.106 [10.9 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-4+b1 [18.2 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-4+b1 [50.1 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5+b3 [158 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.59.0-1 [62.0 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libssh2-1 armhf 1.11.0-4 [197 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libcurl3-gnutls armhf 8.5.0-2 [378 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libcurl4-gnutls-dev armhf 8.5.0-2 [490 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libdeflate-dev armhf 1.20-1 [44.0 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.0-1+b1 [61.3 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libhts3 armhf 1.19+ds-1 [394 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf liblzma-dev armhf 5.6.1+really5.4.5-1 [281 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libhts-dev armhf 1.19+ds-1 [1598 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libsimde-dev all 0.8.0-1 [458 kB] Fetched 23.9 MB in 2s (12.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.106_all.deb ... Unpacking d-shlibs (0.106) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../23-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../25-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../31-libbrotli1_1.1.0-2+b3_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b3) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../32-libsasl2-modules-db_2.1.28+dfsg1-4+b1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../33-libsasl2-2_2.1.28+dfsg1-4+b1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../34-libldap-2.5-0_2.5.13+dfsg-5+b3_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../35-libnghttp2-14_1.59.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.59.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../36-libpsl5_0.21.2-1+b1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1+b1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../37-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../38-libssh2-1_1.11.0-4_armhf.deb ... Unpacking libssh2-1:armhf (1.11.0-4) ... Selecting previously unselected package libcurl3-gnutls:armhf. Preparing to unpack .../39-libcurl3-gnutls_8.5.0-2_armhf.deb ... Unpacking libcurl3-gnutls:armhf (8.5.0-2) ... Selecting previously unselected package libcurl4-gnutls-dev:armhf. Preparing to unpack .../40-libcurl4-gnutls-dev_8.5.0-2_armhf.deb ... Unpacking libcurl4-gnutls-dev:armhf (8.5.0-2) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../41-libdeflate0_1.20-1_armhf.deb ... Unpacking libdeflate0:armhf (1.20-1) ... Selecting previously unselected package libdeflate-dev:armhf. Preparing to unpack .../42-libdeflate-dev_1.20-1_armhf.deb ... Unpacking libdeflate-dev:armhf (1.20-1) ... Selecting previously unselected package libhtscodecs2:armhf. Preparing to unpack .../43-libhtscodecs2_1.6.0-1+b1_armhf.deb ... Unpacking libhtscodecs2:armhf (1.6.0-1+b1) ... Selecting previously unselected package libhts3:armhf. Preparing to unpack .../44-libhts3_1.19+ds-1_armhf.deb ... Unpacking libhts3:armhf (1.19+ds-1) ... Selecting previously unselected package liblzma-dev:armhf. Preparing to unpack .../45-liblzma-dev_5.6.1+really5.4.5-1_armhf.deb ... Unpacking liblzma-dev:armhf (5.6.1+really5.4.5-1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg-3+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3+b1) ... Selecting previously unselected package libhts-dev:armhf. Preparing to unpack .../47-libhts-dev_1.19+ds-1_armhf.deb ... Unpacking libhts-dev:armhf (1.19+ds-1) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../48-libsimde-dev_0.8.0-1_all.deb ... Unpacking libsimde-dev (0.8.0-1) ... Setting up libhtscodecs2:armhf (1.6.0-1+b1) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libsimde-dev (0.8.0-1) ... Setting up libpsl5:armhf (0.21.2-1+b1) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:armhf (1.1.0-2+b3) ... Setting up libnghttp2-14:armhf (1.59.0-1) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up libdeflate0:armhf (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-4+b1) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up autopoint (0.21-14) ... Setting up d-shlibs (0.106) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-4+b1) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:armhf (5.6.1+really5.4.5-1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libssh2-1:armhf (1.11.0-4) ... Setting up libdeflate-dev:armhf (1.20-1) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:armhf (8.5.0-2) ... Setting up libcurl4-gnutls-dev:armhf (8.5.0-2) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libhts3:armhf (1.19+ds-1) ... Setting up libhts-dev:armhf (1.19+ds-1) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/8898/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/8898/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/parasail-2.6.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../parasail_2.6.2+dfsg-1_source.changes dpkg-buildpackage: info: source package parasail dpkg-buildpackage: info: source version 2.6.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:13: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:13: the top level configure.ac:109: warning: The macro `AC_PROG_CC_C99' is obsolete. configure.ac:109: You should run autoupdate. ./lib/autoconf/c.m4:1659: AC_PROG_CC_C99 is expanded from... configure.ac:109: the top level configure.ac:109: installing 'build-aux/compile' configure.ac:78: installing 'build-aux/config.guess' configure.ac:78: installing 'build-aux/config.sub' configure.ac:70: installing 'build-aux/install-sh' configure.ac:70: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' blhc: ignore-line-regexp: C(C|XX) : \.+ .* dh_auto_configure -- --disable-neon \ --enable-shared \ --disable-static ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-neon --enable-shared --disable-static checking whether make supports nested variables... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf configure: configure: C compiler configure: checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for C compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 13.2.0 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for malloc.h... yes checking for poll.h... yes checking for unistd.h... (cached) yes checking for windows.h... no checking for sys/mman.h... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict__ checking size of int... 4 checking for struct __stat64... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for size_t... yes checking for OpenMP flag of C compiler... -fopenmp checking for __builtin_cpu_init... no checking for __builtin_cpu_supports... no checking for SSE2 support... no checking for SSE2 _mm_set1_epi64x... no checking for SSE2 _mm_set_epi64x... no checking for SSE4.1 support... no checking for SSE4.1 _mm_insert_epi64... no checking for SSE4.1 _mm_extract_epi64... no checking for AVX2 support... no checking for AVX2 _mm256_set1_epi64x... no checking for AVX2 _mm256_set_epi64x... no checking for AVX2 _mm256_insert_epi64... no checking for AVX2 _mm256_insert_epi32... no checking for AVX2 _mm256_insert_epi16... no checking for AVX2 _mm256_insert_epi8... no checking for AVX2 _mm256_extract_epi64... no checking for AVX2 _mm256_extract_epi32... no checking for AVX2 _mm256_extract_epi16... no checking for AVX2 _mm256_extract_epi8... no checking for AVX512F support... no checking for AVX512BW support... no checking for AVX512VBMI support... no checking for xgetbv... no checking for AltiVec support... no checking for _aligned_malloc... no checking for aligned_alloc... yes checking for filelength... no checking for memalign... yes checking for memset... yes checking for poll... yes checking for posix_memalign... yes checking for getopt... yes checking for SetUnhandledExceptionFilter... no checking for _fstat64... no checking for _stat64... no checking for int64_t literal suffix... unknown checking for GetSystemTimeAsFileTime... no checking for clock_get_time... no checking for library containing clock_gettime... none required checking for clock_gettime CLOCK_MONOTONIC... no checking for clock_gettime CLOCK_REALTIME... no checking for library containing sqrt... -lm checking for zlib.h... yes checking for library containing gzopen... -lz checking for grep that handles long lines and -e... /usr/bin/grep checking whether C compiler supports visibility flag... -fvisibility=hidden configure: configure: C++ compiler configure: checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for C++ compiler vendor... gnu checking for C++ compiler version... 13.2.0 checking for OpenMP flag of C++ compiler... -fopenmp checking for variadic macros... yes configure: configure: Libtool setup configure: checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking our pkgconfig libname... parasail-1 checking our pkgconfig version... 2.6.2 checking our pkgconfig_libdir... ${libdir}/pkgconfig expanded our pkgconfig_libdir... /usr/lib/arm-linux-gnueabihf/pkgconfig checking our pkgconfig_libfile... parasail-1.pc checking our package / suffix... Pairwise Sequence Alignment Library / checking our pkgconfig description... Pairwise Sequence Alignment Library checking our pkgconfig requires... checking our pkgconfig ext libs... -lparasail checking our pkgconfig cppflags... checking our pkgconfig ldflags... noninstalled pkgconfig -L /build/reproducible-path/parasail-2.6.2+dfsg/src/.libs noninstalled pkgconfig -I /build/reproducible-path/parasail-2.6.2+dfsg/. checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing parasail-1.pc commands config.status: creating parasail-1.pc.in config.status: creating parasail-1.pc config.status: creating parasail-1-uninstalled.pc config.status: creating parasail-1-uninstalled.sh -=-=-=-=-=-=-=-=-=-= Configuration Complete =-=-=-=-=-=-=-=-=-=-=- Configuration summary : parasail version : .................... 2.6.2 Host CPU : ............................ arm Host Vendor : ......................... unknown Host OS : ............................. linux-gnueabihf Toolchain : CC : .................................. gcc (gnu, 13.2.0) CXX : ................................. g++ (gnu, 13.2.0) Flags : CFLAGS : .............................. -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic CXXFLAGS : ............................ -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security CPPFLAGS : ............................ -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS : ............................. -Wl,-z,relro -Wl,-z,now LIBS : ................................ Intrinsics : SSE2 : ................................ auto (no) SSE2_CFLAGS : ......................... not supported SSE4.1 : .............................. auto (no) SSE41_CFLAGS : ........................ not supported AVX2 : ................................ auto (no) AVX2_CFLAGS : ......................... not supported AVX512 : .............................. auto (no) AVX512F_CFLAGS : ...................... not supported AVX512BW_CFLAGS : ..................... not supported AVX512VBMI_CFLAGS : ................... not supported Altivec : ............................. auto (no) ALTIVEC_CFLAGS : ...................... not supported ARM NEON : ............................ no NEON_CFLAGS : ......................... EXTRA_NEON_CFLAGS : ................... Dependencies : OPENMP_CFLAGS : ....................... -fopenmp OPENMP_CXXFLAGS : ..................... -fopenmp CLOCK_LIBS : .......................... MATH_LIBS : ........................... -lm Z_CFLAGS : ............................ Z_LIBS : .............................. -lz Installation directories : Program directory : ................... /usr/bin Library directory : ................... /usr/lib/arm-linux-gnueabihf Include directory : ................... /usr/include Pkgconfig directory : ................. /usr/lib/arm-linux-gnueabihf/pkgconfig Compiling some other packages against parasail may require the addition of '/usr/lib/arm-linux-gnueabihf/pkgconfig' to the PKG_CONFIG_PATH environment variable. make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_auto_build make -j4 make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make all-am make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o apps/parasail_stats.o apps/parasail_stats.c g++ -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o apps/parasail_aligner-parasail_aligner.o `test -f 'apps/parasail_aligner.cpp' || echo './'`apps/parasail_aligner.cpp gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/getMemorySize.o contrib/getMemorySize.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cigar.lo `test -f 'src/cigar.c' || echo './'`src/cigar.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cpuid.lo `test -f 'src/cpuid.c' || echo './'`src/cpuid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/cigar.c -fPIC -DPIC -o src/.libs/libparasail_la-cigar.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/cpuid.c -fPIC -DPIC -o src/.libs/libparasail_la-cpuid.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-function_lookup.lo `test -f 'src/function_lookup.c' || echo './'`src/function_lookup.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/function_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-function_lookup.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-io.lo `test -f 'src/io.c' || echo './'`src/io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/io.c -fPIC -DPIC -o src/.libs/libparasail_la-io.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-isastubs.lo `test -f 'src/isastubs.c' || echo './'`src/isastubs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/isastubs.c -fPIC -DPIC -o src/.libs/libparasail_la-isastubs.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-matrix_lookup.lo `test -f 'src/matrix_lookup.c' || echo './'`src/matrix_lookup.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/matrix_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-matrix_lookup.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-memory.lo `test -f 'src/memory.c' || echo './'`src/memory.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/memory.c -fPIC -DPIC -o src/.libs/libparasail_la-memory.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-parser.lo `test -f 'src/parser.c' || echo './'`src/parser.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/parser.c -fPIC -DPIC -o src/.libs/libparasail_la-parser.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-pssw.lo `test -f 'src/pssw.c' || echo './'`src/pssw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/pssw.c -fPIC -DPIC -o src/.libs/libparasail_la-pssw.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-time.lo `test -f 'src/time.c' || echo './'`src/time.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/time.c -fPIC -DPIC -o src/.libs/libparasail_la-time.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-nw_dispatch.lo `test -f 'src/nw_dispatch.c' || echo './'`src/nw_dispatch.c In file included from /usr/include/c++/13/vector:72, from apps/parasail_aligner.cpp:52: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-nw_dispatch.o In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:425:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:437:30: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:439:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:519:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:538:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:554:30: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:556:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:425:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:437:30: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:439:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:519:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:538:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:554:30: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:556:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_dispatch.lo `test -f 'src/sg_dispatch.c' || echo './'`src/sg_dispatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_dispatch.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sw_dispatch.lo `test -f 'src/sw_dispatch.c' || echo './'`src/sw_dispatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sw_dispatch.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qb_dispatch.lo `test -f 'src/sg_qb_dispatch.c' || echo './'`src/sg_qb_dispatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 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gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qx_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qx_dispatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_db_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_db_dispatch.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qb_de_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qb_de_dispatch.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qe_db_dispatch.lo `test -f 'src/sg_qe_db_dispatch.c' || echo './'`src/sg_qe_db_dispatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qe_de_dispatch.lo `test -f 'src/sg_qe_de_dispatch.c' || echo './'`src/sg_qe_de_dispatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qb_db_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qb_db_dispatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qe_de_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qe_de_dispatch.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-dispatch_profile.lo `test -f 'src/dispatch_profile.c' || echo './'`src/dispatch_profile.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/dispatch_profile.c -fPIC -DPIC -o src/.libs/libparasail_la-dispatch_profile.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-Wall -pedantic -c src/satcheck.c -fPIC -DPIC -o src/.libs/libparasail_la-satcheck.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/striped_unwind.c -fPIC -DPIC -o src/.libs/libparasail_la-striped_unwind.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-traceback.lo `test -f 'src/traceback.c' || echo './'`src/traceback.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/traceback.c -fPIC -DPIC -o src/.libs/libparasail_la-traceback.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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src/.libs/libparasail_novec_la-nw_banded.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_stats.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib 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-pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_stats_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_trace.lo `test -f 'src/nw_trace.c' || echo './'`src/nw_trace.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_trace.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_trace.lo `test -f 'src/sg_trace.c' || echo './'`src/sg_trace.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_trace.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_trace.lo `test -f 'src/sw_trace.c' || echo './'`src/sw_trace.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_trace_scan.lo `test -f 'src/nw_trace_scan.c' || echo './'`src/nw_trace_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_trace.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_trace_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_trace_scan.lo `test -f 'src/sg_trace_scan.c' || echo './'`src/sg_trace_scan.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_trace_scan.lo `test -f 'src/sw_trace_scan.c' || echo './'`src/sw_trace_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_trace_scan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_trace_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_scan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_banded.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_stats_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_stats_scan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_scan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_banded.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_stats.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_stats.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_stats.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/sais-lite-lcp/sais.lo contrib/sais-lite-lcp/sais.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c contrib/sais-lite-lcp/sais.c -fPIC -DPIC -o contrib/sais-lite-lcp/.libs/sais.o /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec.la src/libparasail_novec_la-nw.lo src/libparasail_novec_la-sg.lo src/libparasail_novec_la-sw.lo src/libparasail_novec_la-nw_scan.lo src/libparasail_novec_la-sg_scan.lo src/libparasail_novec_la-sw_scan.lo src/libparasail_novec_la-nw_banded.lo src/libparasail_novec_la-nw_stats.lo src/libparasail_novec_la-sg_stats.lo src/libparasail_novec_la-sw_stats.lo src/libparasail_novec_la-nw_stats_scan.lo src/libparasail_novec_la-sg_stats_scan.lo src/libparasail_novec_la-sw_stats_scan.lo src/libparasail_novec_la-nw_trace.lo src/libparasail_novec_la-sg_trace.lo src/libparasail_novec_la-sw_trace.lo src/libparasail_novec_la-nw_trace_scan.lo src/libparasail_novec_la-sg_trace_scan.lo src/libparasail_novec_la-sw_trace_scan.lo /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_table.la src/libparasail_novec_table_la-nw.lo src/libparasail_novec_table_la-sg.lo src/libparasail_novec_table_la-sw.lo src/libparasail_novec_table_la-nw_scan.lo src/libparasail_novec_table_la-sg_scan.lo src/libparasail_novec_table_la-sw_scan.lo src/libparasail_novec_table_la-nw_banded.lo src/libparasail_novec_table_la-nw_stats.lo src/libparasail_novec_table_la-sg_stats.lo src/libparasail_novec_table_la-sw_stats.lo src/libparasail_novec_table_la-nw_stats_scan.lo src/libparasail_novec_table_la-sg_stats_scan.lo src/libparasail_novec_table_la-sw_stats_scan.lo libtool: link: ar cr .libs/libparasail_novec_table.a src/.libs/libparasail_novec_table_la-nw.o src/.libs/libparasail_novec_table_la-sg.o src/.libs/libparasail_novec_table_la-sw.o src/.libs/libparasail_novec_table_la-nw_scan.o src/.libs/libparasail_novec_table_la-sg_scan.o src/.libs/libparasail_novec_table_la-sw_scan.o src/.libs/libparasail_novec_table_la-nw_banded.o src/.libs/libparasail_novec_table_la-nw_stats.o src/.libs/libparasail_novec_table_la-sg_stats.o src/.libs/libparasail_novec_table_la-sw_stats.o src/.libs/libparasail_novec_table_la-nw_stats_scan.o src/.libs/libparasail_novec_table_la-sg_stats_scan.o src/.libs/libparasail_novec_table_la-sw_stats_scan.o libtool: link: ar cr .libs/libparasail_novec.a src/.libs/libparasail_novec_la-nw.o src/.libs/libparasail_novec_la-sg.o src/.libs/libparasail_novec_la-sw.o src/.libs/libparasail_novec_la-nw_scan.o src/.libs/libparasail_novec_la-sg_scan.o src/.libs/libparasail_novec_la-sw_scan.o src/.libs/libparasail_novec_la-nw_banded.o src/.libs/libparasail_novec_la-nw_stats.o src/.libs/libparasail_novec_la-sg_stats.o src/.libs/libparasail_novec_la-sw_stats.o src/.libs/libparasail_novec_la-nw_stats_scan.o src/.libs/libparasail_novec_la-sg_stats_scan.o src/.libs/libparasail_novec_la-sw_stats_scan.o src/.libs/libparasail_novec_la-nw_trace.o src/.libs/libparasail_novec_la-sg_trace.o src/.libs/libparasail_novec_la-sw_trace.o src/.libs/libparasail_novec_la-nw_trace_scan.o src/.libs/libparasail_novec_la-sg_trace_scan.o src/.libs/libparasail_novec_la-sw_trace_scan.o libtool: link: ranlib .libs/libparasail_novec_table.a libtool: link: ranlib .libs/libparasail_novec.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_table.la" && ln -s "../libparasail_novec_table.la" "libparasail_novec_table.la" ) /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_rowcol.la src/libparasail_novec_rowcol_la-nw.lo src/libparasail_novec_rowcol_la-sg.lo src/libparasail_novec_rowcol_la-sw.lo src/libparasail_novec_rowcol_la-nw_scan.lo src/libparasail_novec_rowcol_la-sg_scan.lo src/libparasail_novec_rowcol_la-sw_scan.lo src/libparasail_novec_rowcol_la-nw_banded.lo src/libparasail_novec_rowcol_la-nw_stats.lo src/libparasail_novec_rowcol_la-sg_stats.lo src/libparasail_novec_rowcol_la-sw_stats.lo src/libparasail_novec_rowcol_la-nw_stats_scan.lo src/libparasail_novec_rowcol_la-sg_stats_scan.lo src/libparasail_novec_rowcol_la-sw_stats_scan.lo libtool: link: ( cd ".libs" && rm -f "libparasail_novec.la" && ln -s "../libparasail_novec.la" "libparasail_novec.la" ) libtool: link: ar cr .libs/libparasail_novec_rowcol.a src/.libs/libparasail_novec_rowcol_la-nw.o src/.libs/libparasail_novec_rowcol_la-sg.o src/.libs/libparasail_novec_rowcol_la-sw.o src/.libs/libparasail_novec_rowcol_la-nw_scan.o src/.libs/libparasail_novec_rowcol_la-sg_scan.o src/.libs/libparasail_novec_rowcol_la-sw_scan.o src/.libs/libparasail_novec_rowcol_la-nw_banded.o src/.libs/libparasail_novec_rowcol_la-nw_stats.o src/.libs/libparasail_novec_rowcol_la-sg_stats.o src/.libs/libparasail_novec_rowcol_la-sw_stats.o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o libtool: link: ranlib .libs/libparasail_novec_rowcol.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_rowcol.la" && ln -s "../libparasail_novec_rowcol.la" "libparasail_novec_rowcol.la" ) /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/libsais.la contrib/sais-lite-lcp/sais.lo libtool: link: ar cr tests/.libs/libsais.a contrib/sais-lite-lcp/.libs/sais.o libtool: link: ranlib tests/.libs/libsais.a libtool: link: ( cd "tests/.libs" && rm -f "libsais.la" && ln -s "../libsais.la" "libsais.la" ) /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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src/libparasail_la-striped_unwind.lo src/libparasail_la-traceback.lo libparasail_novec.la libparasail_novec_table.la libparasail_novec_rowcol.la -lm -lz libtool: link: gcc -shared -fPIC -DPIC src/.libs/libparasail_la-cigar.o src/.libs/libparasail_la-cpuid.o src/.libs/libparasail_la-function_lookup.o src/.libs/libparasail_la-io.o src/.libs/libparasail_la-isastubs.o src/.libs/libparasail_la-matrix_lookup.o src/.libs/libparasail_la-memory.o src/.libs/libparasail_la-parser.o src/.libs/libparasail_la-pssw.o src/.libs/libparasail_la-time.o src/.libs/libparasail_la-nw_dispatch.o src/.libs/libparasail_la-sg_dispatch.o src/.libs/libparasail_la-sw_dispatch.o src/.libs/libparasail_la-sg_qb_dispatch.o src/.libs/libparasail_la-sg_qe_dispatch.o src/.libs/libparasail_la-sg_qx_dispatch.o src/.libs/libparasail_la-sg_db_dispatch.o src/.libs/libparasail_la-sg_de_dispatch.o src/.libs/libparasail_la-sg_dx_dispatch.o src/.libs/libparasail_la-sg_qb_de_dispatch.o src/.libs/libparasail_la-sg_qe_db_dispatch.o src/.libs/libparasail_la-sg_qb_db_dispatch.o src/.libs/libparasail_la-sg_qe_de_dispatch.o src/.libs/libparasail_la-dispatch_profile.o src/.libs/libparasail_la-satcheck.o src/.libs/libparasail_la-striped_unwind.o src/.libs/libparasail_la-traceback.o -Wl,--whole-archive ./.libs/libparasail_novec.a ./.libs/libparasail_novec_table.a ./.libs/libparasail_novec_rowcol.a -Wl,--no-whole-archive -lm -lz -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libparasail.so.8 -o .libs/libparasail.so.8.1.2 libtool: link: (cd ".libs" && rm -f "libparasail.so.8" && ln -s "libparasail.so.8.1.2" "libparasail.so.8") libtool: link: (cd ".libs" && rm -f "libparasail.so" && ln -s "libparasail.so.8.1.2" "libparasail.so") libtool: link: ( cd ".libs" && rm -f "libparasail.la" && ln -s "../libparasail.la" "libparasail.la" ) /bin/sh ./libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apps/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o libparasail.la tests/libsais.la /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o apps/parasail_stats apps/parasail_stats.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_stats apps/parasail_stats.o ./.libs/libparasail.so -lm -lz libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o ./.libs/libparasail.so -lm -lz tests/.libs/libsais.a -fopenmp make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_auto_test make -j4 test "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make tests/traceback tests/test_align tests/test_basic tests/test_gcups tests/test_io tests/test_isa tests/test_matrix tests/test_pssm tests/test_query tests/test_sw_dispatch tests/test_verify tests/test_verify_tables tests/test_verify_rowcols tests/test_verify_traces tests/test_verify_cigars tests/test_12 tests/test_64 tests/test_p29 tests/test_p59 tests/libsais.la make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[2]: 'tests/libsais.la' is up to date. gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/traceback.o tests/traceback.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_align.o tests/test_align.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_basic.o tests/test_basic.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_gcups.o tests/test_gcups.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_io.o tests/test_io.c tests/test_io.c: In function 'main': tests/test_io.c:28:49: warning: passing argument 2 of 'parasail_sequences_pack' from incompatible pointer type [-Wincompatible-pointer-types] 28 | packed = parasail_sequences_pack(sequences, &packed_size); | ^~~~~~~~~~~~ | | | long unsigned int * In file included from tests/test_io.c:6: ./parasail/io.h:57:78: note: expected 'size_t *' {aka 'unsigned int *'} but argument is of type 'long unsigned int *' 57 | char* parasail_sequences_pack(const parasail_sequences_t *sequences, size_t *size); | ~~~~~~~~^~~~ gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_isa.o tests/test_isa.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_matrix.o tests/test_matrix.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_pssm.o tests/test_pssm.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_query-test_query.o `test -f 'tests/test_query.c' || echo './'`tests/test_query.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_sw_dispatch.o tests/test_sw_dispatch.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify-test_verify.o `test -f 'tests/test_verify.c' || echo './'`tests/test_verify.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_tables-test_verify_tables.o `test -f 'tests/test_verify_tables.c' || echo './'`tests/test_verify_tables.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_rowcols-test_verify_rowcols.o `test -f 'tests/test_verify_rowcols.c' || echo './'`tests/test_verify_rowcols.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_traces-test_verify_traces.o `test -f 'tests/test_verify_traces.c' || echo './'`tests/test_verify_traces.c tests/test_verify.c: In function 'main': tests/test_verify.c:310:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 310 | int do_neon = 1; | ^~~~~~~ tests/test_verify.c:309:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 309 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify.c:308:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 308 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify.c:307:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 307 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify.c:306:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 306 | int do_sse2 = 1; | ^~~~~~~ tests/test_verify_tables.c: In function 'main': tests/test_verify_tables.c:328:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 328 | int do_neon = 1; | ^~~~~~~ tests/test_verify_tables.c:327:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 327 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_tables.c:326:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 326 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_tables.c:325:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 325 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_tables.c:324:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 324 | int do_sse2 = 1; | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_cigars-test_verify_cigars.o `test -f 'tests/test_verify_cigars.c' || echo './'`tests/test_verify_cigars.c tests/test_verify_traces.c: In function 'check_functions': tests/test_verify_traces.c:180:37: warning: assignment to 'int8_t *' {aka 'signed char *'} from incompatible pointer type 'int *' [-Wincompatible-pointer-types] 180 | ref_trace_table = parasail_result_get_trace_table(reference_result); | ^ tests/test_verify_traces.c:193:69: warning: passing argument 4 of 'diff_array' from incompatible pointer type [-Wincompatible-pointer-types] 193 | if (diff_array(size_a, size_b, ref_trace_table, trace_table, result)) { | ^~~~~~~~~~~ | | | int * tests/test_verify_traces.c:83:17: note: expected 'int8_t *' {aka 'signed char *'} but argument is of type 'int *' 83 | int8_t *b_, | ~~~~~~~~^~ tests/test_verify_traces.c: In function 'main': tests/test_verify_traces.c:239:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 239 | int do_neon = 1; | ^~~~~~~ tests/test_verify_traces.c:238:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 238 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_traces.c:237:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 237 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_traces.c:236:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 236 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_traces.c:235:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 235 | int do_sse2 = 1; | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_12.o tests/test_12.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_64.o tests/test_64.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p29.o tests/test_p29.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p59.o tests/test_p59.c tests/test_verify_cigars.c: In function 'main': tests/test_verify_cigars.c:311:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 311 | int do_neon = 1; | ^~~~~~~ tests/test_verify_cigars.c:310:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 310 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_cigars.c:309:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 309 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_cigars.c:308:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 308 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_cigars.c:307:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 307 | int do_sse2 = 1; | ^~~~~~~ /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/traceback tests/traceback.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/traceback tests/traceback.o ./.libs/libparasail.so -lm -lz /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_align tests/test_align.o libparasail.la /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_basic tests/test_basic.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_align tests/test_align.o ./.libs/libparasail.so -lm -lz In file included from tests/test_p59.c:33: tests/test_p59.h: In function 'main': /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_gcups tests/test_gcups.o libparasail.la tests/test_p59.h:513:1: warning: string length '51025' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings] 513 | "GAAAGTGACAGGGAGAATGGAACCA"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ tests/test_p59.h:1026:1: warning: string length '51024' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings] 1026 | "AAAGTGACAGGGAGAATGGAACCA"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ tests/test_p59.c:39:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=] 39 | printf("s1_len=%d limit=%ld\n", s1_len, s1Limit); | ~~^ ~~~~~~~ | | | | long int int64_t {aka long long int} | %lld tests/test_p59.c:40:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=] 40 | printf("s2_len=%d limit=%ld\n", s2_len, s2Limit); | ~~^ ~~~~~~~ | | | | long int int64_t {aka long long int} | %lld libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_basic tests/test_basic.o ./.libs/libparasail.so -lm -lz /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_io tests/test_io.o libparasail.la /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_isa tests/test_isa.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_gcups tests/test_gcups.o ./.libs/libparasail.so -lm -lz /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_matrix tests/test_matrix.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_io tests/test_io.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_isa tests/test_isa.o ./.libs/libparasail.so -lm -lz /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_pssm tests/test_pssm.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_matrix tests/test_matrix.o ./.libs/libparasail.so -lm -lz /bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_query tests/test_query-test_query.o libparasail.la /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_sw_dispatch tests/test_sw_dispatch.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_pssm tests/test_pssm.o ./.libs/libparasail.so -lm -lz /bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify tests/test_verify-test_verify.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_query tests/test_query-test_query.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_sw_dispatch tests/test_sw_dispatch.o ./.libs/libparasail.so -lm -lz /bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_tables tests/test_verify_tables-test_verify_tables.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify tests/test_verify-test_verify.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o libparasail.la /bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_traces tests/test_verify_traces-test_verify_traces.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_tables tests/test_verify_tables-test_verify_tables.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_traces tests/test_verify_traces-test_verify_traces.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_12 tests/test_12.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_64 tests/test_64.o libparasail.la /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p29 tests/test_p29.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_12 tests/test_12.o ./.libs/libparasail.so -lm -lz /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p59 tests/test_p59.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_64 tests/test_64.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p29 tests/test_p29.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p59 tests/test_p59.o ./.libs/libparasail.so -lm -lz make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make check-TESTS make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[3]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' PASS: tests/test_basic PASS: tests/test_isa PASS: tests/test_verify.test ============================================================================ Testsuite summary for Pairwise Sequence Alignment Library 2.6.2 ============================================================================ # TOTAL: 3 # PASS: 3 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/parasail-2.6.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/sh ./libtool --mode=install /usr/bin/install -c libparasail.la '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libparasail.so.8.1.2 /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8.1.2 libtool: install: (cd /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.2 libparasail.so.8 || { rm -f libparasail.so.8 && ln -s libparasail.so.8.1.2 libparasail.so.8; }; }) libtool: install: (cd /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.2 libparasail.so || { rm -f libparasail.so && ln -s libparasail.so.8.1.2 libparasail.so; }; }) libtool: install: /usr/bin/install -c .libs/libparasail.lai /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin' /bin/sh ./libtool --mode=install /usr/bin/install -c apps/parasail_aligner apps/parasail_stats '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin' libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c apps/.libs/parasail_aligner /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin/parasail_aligner libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c apps/.libs/parasail_stats /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin/parasail_stats /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 parasail.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/blosum100.h parasail/matrices/blosum30.h parasail/matrices/blosum35.h parasail/matrices/blosum40.h parasail/matrices/blosum45.h parasail/matrices/blosum50.h parasail/matrices/blosum55.h parasail/matrices/blosum60.h parasail/matrices/blosum62.h parasail/matrices/blosum65.h parasail/matrices/blosum70.h parasail/matrices/blosum75.h parasail/matrices/blosum80.h parasail/matrices/blosum85.h parasail/matrices/blosum90.h parasail/matrices/blosum_map.h parasail/matrices/blosumn.h parasail/matrices/dnafull.h parasail/matrices/nuc44.h parasail/matrices/pam10.h parasail/matrices/pam100.h parasail/matrices/pam110.h parasail/matrices/pam120.h parasail/matrices/pam130.h parasail/matrices/pam140.h parasail/matrices/pam150.h parasail/matrices/pam160.h parasail/matrices/pam170.h parasail/matrices/pam180.h parasail/matrices/pam190.h parasail/matrices/pam20.h parasail/matrices/pam200.h parasail/matrices/pam210.h parasail/matrices/pam220.h parasail/matrices/pam230.h parasail/matrices/pam240.h parasail/matrices/pam250.h parasail/matrices/pam260.h parasail/matrices/pam270.h parasail/matrices/pam280.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail' /usr/bin/install -c -m 644 parasail/cpuid.h parasail/io.h parasail/function_lookup.h parasail/matrix_lookup.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/pam290.h parasail/matrices/pam30.h parasail/matrices/pam300.h parasail/matrices/pam310.h parasail/matrices/pam320.h parasail/matrices/pam330.h parasail/matrices/pam340.h parasail/matrices/pam350.h parasail/matrices/pam360.h parasail/matrices/pam370.h parasail/matrices/pam380.h parasail/matrices/pam390.h parasail/matrices/pam40.h parasail/matrices/pam400.h parasail/matrices/pam410.h parasail/matrices/pam420.h parasail/matrices/pam430.h parasail/matrices/pam440.h parasail/matrices/pam450.h parasail/matrices/pam460.h parasail/matrices/pam470.h parasail/matrices/pam480.h parasail/matrices/pam490.h parasail/matrices/pam50.h parasail/matrices/pam500.h parasail/matrices/pam60.h parasail/matrices/pam70.h parasail/matrices/pam80.h parasail/matrices/pam90.h parasail/matrices/pam_map.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 parasail-1.pc '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_install cp `find .libs -name "libparasail*.a" | head -n1` \ debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.a d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" \ usr/lib/arm-linux-gnueabihf/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libparasail-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libparasail8/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.a debian/libparasail-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so debian/libparasail-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8 debian/libparasail8/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8.1.2 debian/libparasail8/usr/lib/arm-linux-gnueabihf PKGDEV=libparasail-dev PKGSHL=libparasail8 install -d -m 755 debian/libparasail-dev/usr mv debian/tmp/usr/include debian/libparasail-dev/usr install -d -m 755 debian/libparasail-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libparasail-dev/usr/lib/arm-linux-gnueabihf/pkgconfig rm debian/libparasail-dev/usr/lib/arm-linux-gnueabihf/libparasail.a dh_install -p libparasail-dev .libs/*.a usr/lib/arm-linux-gnueabihf find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_fixperms find debian -name "*.c" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libparasail-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libparasail-dev' in '../libparasail-dev_2.6.2+dfsg-1_armhf.deb'. dpkg-deb: building package 'libparasail8-dbgsym' in '../libparasail8-dbgsym_2.6.2+dfsg-1_armhf.deb'. dpkg-deb: building package 'parasail-dbgsym' in '../parasail-dbgsym_2.6.2+dfsg-1_armhf.deb'. dpkg-deb: building package 'parasail' in '../parasail_2.6.2+dfsg-1_armhf.deb'. dpkg-deb: building package 'libparasail8' in '../libparasail8_2.6.2+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../parasail_2.6.2+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../parasail_2.6.2+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/8898/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/8898/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8898 and its subdirectories I: Current time: Sun Apr 21 02:59:16 +14 2024 I: pbuilder-time-stamp: 1713617956