I: pbuilder: network access will be disabled during build
I: Current time: Mon Dec 23 20:35:20 +14 2024
I: pbuilder-time-stamp: 1734935720
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [loki_2.4.7.4-12.dsc]
I: copying [./loki_2.4.7.4.orig.tar.gz]
I: copying [./loki_2.4.7.4-12.debian.tar.xz]
I: Extracting source
gpgv: Signature made Thu Dec 19 17:57:53 2024 
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./loki_2.4.7.4-12.dsc: no acceptable signature found
dpkg-source: info: extracting loki in loki-2.4.7.4
dpkg-source: info: unpacking loki_2.4.7.4.orig.tar.gz
dpkg-source: info: unpacking loki_2.4.7.4-12.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10_utils.patch
dpkg-source: info: applying 10_lex.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying gcc-4.1.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/5045/tmp/hooks/D01_modify_environment starting
debug: Running on ff4a.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Dec 23 06:35 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/5045/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/5045/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
  BASH_VERSION='5.2.37(1)-release'
  BUILDDIR=/build/reproducible-path
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=armhf
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
  DIRSTACK=()
  DISTRIBUTION=trixie
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=arm
  HOST_ARCH=armhf
  IFS=' 	
  '
  INVOCATION_ID=5fc5a353759b44f084ab2609377ea130
  LANG=C
  LANGUAGE=it_CH:it
  LC_ALL=C
  MACHTYPE=arm-unknown-linux-gnueabihf
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnueabihf
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=5045
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MunbEZsH/pbuilderrc_9A99 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MunbEZsH/b2 --logfile b2/build.log loki_2.4.7.4-12.dsc'
  SUDO_GID=113
  SUDO_UID=107
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://10.0.0.15:3142/
I: uname -a
  Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/5045/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19681 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 
0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded.
Need to get 19.1 MB of archives. After unpacking 71.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB]
Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB]
Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-3 [195 kB]
Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB]
Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-6 [1091 kB]
Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-12 [83.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB]
Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-3 [723 kB]
Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB]
Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB]
Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 21 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 22 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB]
Get: 23 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 24 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB]
Get: 25 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB]
Get: 26 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-3 [1488 kB]
Get: 27 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 28 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 29 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB]
Fetched 19.1 MB in 1s (15.5 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19681 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:armhf.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ...
Unpacking libmagic1t64:armhf (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.22.5-3_armhf.deb ...
Unpacking gettext-base (0.22.5-3) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-6_armhf.deb ...
Unpacking groff-base (1.23.0-6) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.40.2-12_armhf.deb ...
Unpacking bsdextrautils (2.40.2-12) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.22.5-3_all.deb ...
Unpacking autopoint (0.22.5-3) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ...
Unpacking libdebhelper-perl (13.20) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-8_all.deb ...
Unpacking libtool (2.4.7-8) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:armhf.
Preparing to unpack .../21-libelf1t64_0.192-4_armhf.deb ...
Unpacking libelf1t64:armhf (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ...
Unpacking dwz (0.15-1+b2) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../23-libicu72_72.1-5+b1_armhf.deb ...
Unpacking libicu72:armhf (72.1-5+b1) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ...
Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../25-gettext_0.22.5-3_armhf.deb ...
Unpacking gettext (0.22.5-3) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../28-debhelper_13.20_all.deb ...
Unpacking debhelper (13.20) ...
Setting up libpipeline1:armhf (1.5.8-1) ...
Setting up libicu72:armhf (72.1-5+b1) ...
Setting up bsdextrautils (2.40.2-12) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.20) ...
Setting up libmagic1t64:armhf (1:5.45-3+b1) ...
Setting up gettext-base (0.22.5-3) ...
Setting up m4 (1.4.19-4) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:armhf (0.192-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.22.5-3) ...
Setting up autoconf (2.72-3) ...
Setting up dwz (0.15-1+b2) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:armhf (0.0.8-1+b2) ...
Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up gettext (0.22.5-3) ...
Setting up libtool (2.4.7-8) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up groff-base (1.23.0-6) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.20) ...
Processing triggers for libc-bin (2.40-4) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/5045/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for trixie
I: user script /srv/workspace/pbuilder/5045/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/loki-2.4.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../loki_2.4.7.4-12_source.changes
dpkg-buildpackage: info: source package loki
dpkg-buildpackage: info: source version 2.4.7.4-12
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in'
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:4: warning: The macro 'AC_CONFIG_HEADER' is obsolete.
configure.in:4: You should run autoupdate.
./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
configure.in:4: the top level
configure.in:40: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete
./lib/autoconf/programs.m4:743: _AC_PROG_LEX is expanded from...
./lib/autoconf/programs.m4:736: AC_PROG_LEX is expanded from...
configure.in:40: the top level
configure.in:57: warning: The macro 'AC_HEADER_STDC' is obsolete.
configure.in:57: You should run autoupdate.
./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from...
configure.in:57: the top level
configure.in:111: warning: AC_OUTPUT should be used without arguments.
configure.in:111: You should run autoupdate.
autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in'
   debian/rules override_dh_auto_configure-arch
make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
dh_auto_configure -- --exec_prefix=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --exec_prefix=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr
checking whether make sets $(MAKE)... yes
checking for DMALLOC library
Looking for dmalloc.h in ${prefix}/include and libdmalloc.a in ${prefix}/lib/arm-linux-gnueabihf
Looking for dmalloc.h in /usr/local/include and libdmalloc.a in /usr/local/lib
Looking for dmalloc.h in /usr/include and libdmalloc.a in /usr/lib
Looking for dmalloc.h in /build/reproducible-path/loki-2.4.7.4/debian/.debhelper/generated/_source/home/include and libdmalloc.a in /build/reproducible-path/loki-2.4.7.4/debian/.debhelper/generated/_source/home/lib
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for flex... no
checking for lex... no
checking for bison... no
checking for byacc... no
checking for ranlib... /usr/bin/ranlib
checking for ar... /usr/bin/ar
checking for sed... /usr/bin/sed
checking for cp... /usr/bin/cp
checking for grep... /usr/bin/grep
checking for mv... /usr/bin/mv
checking for gzip... /usr/bin/gzip
checking for chmod... /usr/bin/chmod
checking for perl... /usr/bin/perl
checking for makedepend... :
checking for sin in -lm... yes
checking for accept in -lsocket... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for fcntl.h... yes
checking for limits.h... yes
checking for values.h... yes
checking for unistd.h... (cached) yes
checking for sys/systeminfo.h... no
checking for mode_t... yes
checking for off_t... yes
checking for pid_t... yes
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for socklen_t... 
no
checking for an ANSI C-conforming const... yes
checking for vprintf... yes
checking for memcpy... yes
checking for regcomp... yes
checking for strtod... yes
checking for strtol... yes
checking for gethostname... yes
checking for popen... yes
checking for snprintf... yes
checking for atexit... yes
checking for memmove... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libsrc/Makefile
config.status: creating prepsrc/Makefile
config.status: creating prepsrc/compat/Makefile
config.status: creating lokisrc/Makefile
config.status: creating test/Makefile
config.status: creating utils/Makefile
config.status: creating include/config.h
make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
   debian/rules override_dh_auto_configure-indep
make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
# do nothing here
make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
   debian/rules override_dh_auto_build-indep
make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
# nothing to do here
make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
   dh_auto_build -Nloki-doc
	make -j4
make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
for subdir in libsrc prepsrc lokisrc utils; do \
(cd $subdir; make depend) \
done
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc'
: -I../include/   io_stuff.c ranlib.c genrand.c ran_xtra.c mkbackup.c strsep.c utils.c remember.c peel_utils.c qsort.c min_deg.c bin_tree.c getopt_long.c
touch depend
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc'
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
: -I../include  control_parse.c control_lex.c  check_het.c test_het.c prep.c calc_nrm.c write_report.c prep_utils.c gen_elim.c prep_do_peel_op.c write_data.c
touch depend
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
: -I../include  loki.c loki_peel.c loki_init.c alloc_loki.c loki_sample.c loki_pen.c loki_tlmoves.c meiosis_scan.c loki_identity.c sample_rand.c sample_effects.c loki_setup.c loki_dump.c sample_cens.c handle_res.c print_data.c calc_var_locus.c loki_output.c sample_nu.c loki_complex_peel.c loki_npl.c loki_simple_sample.c loki_simple_peel.c loki_trait_simple_peel.c loki_trait_simple_sample.c get_par_probs.c read_solar_idfile.c peel_to_par.c update_segs.c  param_parse.c param_lex.c read_binfiles.c loki_utils.c kinship.c genedrop.c mat_utils.c output_recomb.c seg_pen.c gen_pen.c loki_ibd.c get_founders.c pass_founder_genes.c 
touch depend
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils'
: -I../include  qavg.c hist.c
touch depend
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils'
touch depend
for subdir in libsrc prepsrc lokisrc utils; do \
(cd $subdir; make) \
done
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc'
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o io_stuff.o io_stuff.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o ranlib.o ranlib.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o genrand.o genrand.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o ran_xtra.o ran_xtra.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mkbackup.o mkbackup.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o strsep.o strsep.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o utils.o utils.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o remember.o remember.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o peel_utils.o peel_utils.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o qsort.o qsort.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o min_deg.o min_deg.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o bin_tree.o bin_tree.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o getopt_long.o getopt_long.c
/usr/bin/ar cr libgen.a io_stuff.o ranlib.o genrand.o ran_xtra.o mkbackup.o strsep.o utils.o remember.o peel_utils.o qsort.o min_deg.o bin_tree.o getopt_long.o
/usr/bin/ranlib libgen.a
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc'
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o control_parse.o control_parse.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o control_lex.o control_lex.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o read_data.o read_data.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o setup_ped.o setup_ped.c
setup_ped.c: In function 'setup_pedigree':
setup_ped.c:426:83: warning: this statement may fall through [-Wimplicit-fallthrough=]
  426 |                                                                                 if(i!=id) {
      |                                                                                   ^
setup_ped.c:430:74: note: here
  430 |                                                                          default:
      |                                                                          ^~~~~~~
lex.yy.c:2062:12: warning: 'input' defined but not used [-Wunused-function]
setup_ped.c: In function 'check_ymark':
setup_ped.c:1135:42: warning: pointer 'list' may be used after 'free' [-Wuse-after-free]
 1135 |                 if(pl->type==LINK_Y) list[ny++]=locus;
      |                                          ^
setup_ped.c:1127:9: note: call to 'free' here
 1127 |         free(list);
      |         ^~~~~~~~~~
setup_ped.c:1141:17: warning: pointer 'list' may be used after 'free' [-Wuse-after-free]
 1141 |                 do_yprint(i,list,ny);
      |                 ^~~~~~~~~~~~~~~~~~~~
setup_ped.c:1127:9: note: call to 'free' here
 1127 |         free(list);
      |         ^~~~~~~~~~
control_lex.l: In function 'yy_orig_lex':
control_lex.l:106:11: warning: '__builtin_strncpy' specified bound 4096 equals destination size [-Wstringop-truncation]
  106 |     (void)strncpy(linebuf,yytext+1,LINEBUFSIZE);
      |           ^
control_lex.l:95:11: warning: '__builtin_strncpy' specified bound 4096 equals destination size [-Wstringop-truncation]
   95 |     (void)strncpy(linebuf,yytext,LINEBUFSIZE);
      |           ^
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o recode_fact.o recode_fact.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o cleanup.o cleanup.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o restrict_data.o restrict_data.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o match_records.o match_records.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o init_fam.o init_fam.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o output_data.o output_data.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_marker_name.o get_marker_name.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep.o prep.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o calc_nrm.o calc_nrm.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o write_report.o write_report.c
write_report.c: In function 'WriteReport':
write_report.c:286:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
  286 |                         if(!elem->type&(ST_MODEL|ST_TRAIT)) continue;
      |                            ^~~~~~~~~~~
write_report.c:300:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
  300 |                         if(!elem->type&(ST_MODEL|ST_TRAIT)) continue;
      |                            ^~~~~~~~~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep_utils.o prep_utils.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gen_elim.o gen_elim.c
gen_elim.c: In function 'min_degree':
gen_elim.c:1075:31: warning: variable 'best_fg' set but not used [-Wunused-but-set-variable]
 1075 |         int x,i1,k1,k2,*trans,best_fg=0;
      |                               ^~~~~~~
gen_elim.c: In function 'find_sequence':
gen_elim.c:1156:24: warning: variable 'mark' set but not used [-Wunused-but-set-variable]
 1156 |         struct Marker *mark;
      |                        ^~~~
gen_elim.c:1155:31: warning: variable 'order1' set but not used [-Wunused-but-set-variable]
 1155 |         int *g_perm,*order=0,*order1;
      |                               ^~~~~~
gen_elim.c: In function 'logical_peel':
gen_elim.c:1268:24: warning: variable 'mark' set but not used [-Wunused-but-set-variable]
 1268 |         struct Marker *mark;
      |                        ^~~~
gen_elim.c:1266:34: warning: variable 'pp1' set but not used [-Wunused-but-set-variable]
 1266 |         struct Peelseq_Head *pp,*pp1;
      |                                  ^~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep_do_peel_op.o prep_do_peel_op.c
prep_do_peel_op.c: In function 'do_peel_op':
prep_do_peel_op.c:238:26: warning: variable 'fill' set but not used [-Wunused-but-set-variable]
  238 |         double max_terms,fill;
      |                          ^~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o write_data.o write_data.c
/usr/bin/ar cr libprep.a control_parse.o control_lex.o read_data.o setup_ped.o recode_fact.o cleanup.o restrict_data.o match_records.o init_fam.o output_data.o get_marker_name.o
/usr/bin/ranlib libprep.a
(cd compat; make)
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat'
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I..  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o compat.o compat.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I..  -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o merlin.o merlin.c
merlin.c: In function 'process_qtdt':
merlin.c:59:60: warning: parameter 'error_check' set but not used [-Wunused-but-set-parameter]
   59 | int process_qtdt(int argc,char *argv[],char **LogFile,int *error_check,loki_time *lt)
      |                                                       ~~~~~^~~~~~~~~~~
merlin.c:162:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  162 |                                 nmark++;
      |                                 ~~~~~^~
merlin.c:163:26: note: here
  163 |                          case 'A':
      |                          ^~~~
/usr/bin/ar cr libcompat.a compat.o merlin.o
/usr/bin/ranlib libcompat.a
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat'
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now  -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm 
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o param_parse.o param_parse.c
gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -DYY_NO_UNPUT param_lex.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o read_binfiles.o read_binfiles.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_utils.o loki_utils.c
param_lex.c: In function 'yy_get_next_buffer':
param_lex.c:641:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  641 |                 for ( n = 0; n < max_size && \
      |                                ^
param_lex.c:1161:17: note: in expansion of macro 'YY_INPUT'
 1161 |                 YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]),
      |                 ^~~~~~~~
param_lex.c: At top level:
param_lex.c:1301:16: warning: 'input' defined but not used [-Wunused-function]
 1301 |     static int input  (void)
      |                ^~~~~
param_lex.c:1260:17: warning: 'yyunput' defined but not used [-Wunused-function]
 1260 |     static void yyunput (int c, register char * yy_bp )
      |                 ^~~~~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o kinship.o kinship.c
param_lex.l: In function 'yylex':
param_lex.l:91:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation]
   91 |     (void)strncpy(linebuf,yytext+1,512);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
param_lex.l:64:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation]
   64 |     (void)strncpy(linebuf,yytext,512);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o genedrop.o genedrop.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mat_utils.o mat_utils.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o output_recomb.o output_recomb.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o seg_pen.o seg_pen.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gen_pen.o gen_pen.c
gen_pen.c: In function 'calc_degree':
gen_pen.c:321:31: warning: variable 'k2' set but not used [-Wunused-but-set-variable]
  321 |         int i1,j,j1,j2,k=0,k1,k2;
      |                               ^~
gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -DIBD_COMPRESS_PROG=\"/usr/bin/gzip\" loki_ibd.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_founders.o get_founders.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o pass_founder_genes.o pass_founder_genes.c
pass_founder_genes.c: In function 'pass_founder_genes':
pass_founder_genes.c:35:47: warning: variable 'locus1' set but not used [-Wunused-but-set-variable]
   35 |         int i,i1,j,s,**genes,**seg,comp,cs,nc,locus1;
      |                                               ^~~~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki.o loki.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_peel.o loki_peel.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_init.o loki_init.c
loki_init.c: In function 'InitValues':
loki_init.c:125:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  125 |                         tau_beta[mod]*=residual_var[mod];
      |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
loki_init.c:126:18: note: here
  126 |                  case 1:
      |                  ^~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o alloc_loki.o alloc_loki.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_sample.o loki_sample.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_pen.o loki_pen.c
loki_peel.c: In function 'peel_locus':
loki_peel.c:427:43: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized]
  427 |                                         if(z== -DBL_MAX) {
      |                                           ^
loki_peel.c:145:26: note: 'z' was declared here
  145 |    double like=0.0,like1,z,z1,theta,Mtp[2],Ptp[2],*pos,*eff,**count,*tpp,*freq1,*count1;
      |                          ^
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_tlmoves.o loki_tlmoves.c
loki_tlmoves.c: In function 'sample_mpos':
loki_tlmoves.c:152:36: warning: variable 'idd' set but not used [-Wunused-but-set-variable]
  152 |         int i,j,locus,k2=-1,k3,ids,idd,sx,**seg,s,s1;
      |                                    ^~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o meiosis_scan.o meiosis_scan.c
meiosis_scan.c: In function 'meiosis_scan':
meiosis_scan.c:162:76: warning: variable 'n_comp1' set but not used [-Wunused-but-set-variable]
  162 |         int sex,kid,**seg,**seg1,kid1,nkids1,*kids1,lffg,symflag,n_qtl,qtl,n_comp1;
      |                                                                            ^~~~~~~
loki_tlmoves.c:210:61: warning: 'x' may be used uninitialized [-Wmaybe-uninitialized]
  210 |                                         r=.5*(1.0-exp(.02*(x-x1)));
      |                                                           ~~^~~~
loki_tlmoves.c:153:48: note: 'x' was declared here
  153 |         double pp[2][50],ct1[2][50],ct2[2][50],x,x1,r,z,z1;
      |                                                ^
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_identity.o loki_identity.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_rand.o sample_rand.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_effects.o sample_effects.c
loki_tlmoves.c: In function 'get_tl_position':
loki_tlmoves.c:623:17: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized]
  623 |         prior[i]+=z;
      |                 ^~
loki_tlmoves.c:606:16: note: 'z' was declared here
  606 |         double z,z1,z2,map_length;
      |                ^
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_setup.o loki_setup.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_dump.o loki_dump.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_cens.o sample_cens.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o handle_res.o handle_res.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o print_data.o print_data.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o calc_var_locus.o calc_var_locus.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_output.o loki_output.c
loki_output.c: In function 'OutputSample':
loki_output.c:345:17: warning: this statement may fall through [-Wimplicit-fallthrough=]
  345 |                 OutputSample_2(fptr,lp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
loki_output.c:346:10: note: here
  346 |          case OUTPUT_VERSION_2_3:
      |          ^~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_nu.o sample_nu.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_complex_peel.o loki_complex_peel.c
loki_complex_peel.c: In function 'loki_complex_peelop':
loki_complex_peel.c:379:16: warning: variable 'max_terms' set but not used [-Wunused-but-set-variable]
  379 |         double max_terms,*tp,prob=0.0,z,p1,Konst=0.0;
      |                ^~~~~~~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_npl.o loki_npl.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_simple_sample.o loki_simple_sample.c
loki_simple_sample.c: In function 'loki_simple_sample':
loki_simple_sample.c:25:58: warning: variable 'tpp2' set but not used [-Wunused-but-set-variable]
   25 |         double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2;
      |                                                          ^~~~
loki_simple_sample.c:25:52: warning: variable 'tpp1' set but not used [-Wunused-but-set-variable]
   25 |         double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2;
      |                                                    ^~~~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_simple_peel.o loki_simple_peel.c
loki_simple_peel.c: In function 'loki_simple_peelop':
loki_simple_peel.c:601:54: warning: 'cm[0]' may be used uninitialized [-Wmaybe-uninitialized]
  601 |                                 id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i;
      |                                            ~~~~~~~~~~^~~~
loki_simple_peel.c:27:28: note: 'cm[0]' was declared here
   27 |         lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask;
      |                            ^~
loki_simple_peel.c:600:54: warning: 'cm[1]' may be used uninitialized [-Wmaybe-uninitialized]
  600 |                                 id_set1[i]=(cm[X_PAT]&a1)?l:i1;
      |                                            ~~~~~~~~~~^~~~
loki_simple_peel.c:27:28: note: 'cm[1]' was declared here
   27 |         lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask;
      |                            ^~
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_trait_simple_peel.o loki_trait_simple_peel.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_trait_simple_sample.o loki_trait_simple_sample.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_par_probs.o get_par_probs.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o read_solar_idfile.o read_solar_idfile.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o peel_to_par.o peel_to_par.c
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o update_segs.o update_segs.c
loki_simple_peel.c: In function 'loki_simple_peelop_x':
loki_simple_peel.c:1279:54: warning: 'cm[0]' may be used uninitialized [-Wmaybe-uninitialized]
 1279 |                                 id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i;
      |                                            ~~~~~~~~~~^~~~
loki_simple_peel.c:723:28: note: 'cm[0]' was declared here
  723 |         lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask;
      |                            ^~
loki_simple_peel.c:1278:54: warning: 'cm[1]' may be used uninitialized [-Wmaybe-uninitialized]
 1278 |                                 id_set1[i]=(cm[X_PAT]&a1)?l:i1;
      |                                            ~~~~~~~~~~^~~~
loki_simple_peel.c:723:28: note: 'cm[1]' was declared here
  723 |         lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask;
      |                            ^~
/usr/bin/ar cr libloki.a param_parse.o param_lex.o read_binfiles.o loki_utils.o kinship.o genedrop.o mat_utils.o output_recomb.o seg_pen.o gen_pen.o loki_ibd.o get_founders.o pass_founder_genes.o
/usr/bin/ranlib libloki.a
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now  -L. -L../libsrc -lloki -lgen -lm 
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils'
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o qavg qavg.c -Wl,-z,relro -Wl,-z,now  -lm 
gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o hist hist.c -Wl,-z,relro -Wl,-z,now 
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils'
make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
   debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
cd test; if [ -f Makefile ] ; then make ; fi
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/test'
/usr/bin/sed s+SED+/usr/bin/sed+g loki_test.in|/usr/bin/sed s+PREP+../prepsrc/prep+g|\
/usr/bin/sed s+LOKI+../lokisrc/loki+g|/usr/bin/sed s+GREP+/usr/bin/grep+g > tmp
cp tmp loki_test && chmod 755 loki_test
/usr/bin/sed s+COMPRESS+/usr/bin/gzip+g control_gaw9.in > tmp
cp tmp control_gaw9
JV test 1 ... OK
JV test 2 ... OK
JV censored data test ... OK
LM sample test ... OK
Major gene test ... OK
GAW9 test ... OK
JV restart test ... OK
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/test'
make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
   dh_auto_test -Nloki
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_installdirs
   debian/rules override_dh_auto_install-arch
make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
dh_auto_install -a
	make -j4 install DESTDIR=/build/reproducible-path/loki-2.4.7.4/debian/tmp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
for subdir in libsrc prepsrc lokisrc utils; do \
(cd $subdir; make) \
done
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils'
for subdir in prepsrc lokisrc utils; do \
(cd $subdir; make install) \
done
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
mkdir ../bin
for file in prep; do \
/usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \
/usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
for file in loki; do \
/usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \
/usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils'
for file in ext count dist freq sort_error; do \
/usr/bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \
/usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \
done
for file in qavg hist; do \
/usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \
/usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils'
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
make install prefix=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr bindir=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin LDFLAGS="-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
for subdir in libsrc prepsrc lokisrc utils; do \
(cd $subdir; make) \
done
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils'
for subdir in prepsrc lokisrc utils; do \
(cd $subdir; make install) \
done
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
for file in prep; do \
/usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \
/usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
for file in loki; do \
/usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \
/usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils'
for file in ext count dist freq sort_error; do \
/usr/bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \
/usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \
done
for file in qavg hist; do \
/usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \
/usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils'
make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
   debian/rules override_dh_auto_install-indep
make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
# nothing to do here
make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
   dh_installdocs
   dh_installchangelogs
   dh_installexamples
   debian/rules override_dh_installman-arch
make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
dh_installman -a
for man in hist.1 loki_count.1 loki_dist.1 loki_ext.1 loki_freq.1 loki_sort_error.1 prep.1 qavg.1 ; do \
    ln -s loki.1.gz debian/loki/usr/share/man/man1/${man}.gz ; \
done
make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
   dh_installman -Nloki
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
   dh_installdeb
   dh_gencontrol
dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'loki' in '../loki_2.4.7.4-12_armhf.deb'.
dpkg-deb: building package 'loki-dbgsym' in '../loki-dbgsym_2.4.7.4-12_armhf.deb'.
dpkg-deb: building package 'loki-doc' in '../loki-doc_2.4.7.4-12_all.deb'.
 dpkg-genbuildinfo --build=binary -O../loki_2.4.7.4-12_armhf.buildinfo
 dpkg-genchanges --build=binary -O../loki_2.4.7.4-12_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/5045/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/5045/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/5045 and its subdirectories
I: Current time: Mon Dec 23 20:38:01 +14 2024
I: pbuilder-time-stamp: 1734935881