I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 5 07:55:30 +14 2024 I: pbuilder-time-stamp: 1722794130 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cyvcf2_0.31.1-2.dsc] I: copying [./cyvcf2_0.31.1.orig.tar.gz] I: copying [./cyvcf2_0.31.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jul 31 09:42:06 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.1-2.dsc: no acceptable signature found dpkg-source: info: extracting cyvcf2 in cyvcf2-0.31.1 dpkg-source: info: unpacking cyvcf2_0.31.1.orig.tar.gz dpkg-source: info: unpacking cyvcf2_0.31.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/21062/tmp/hooks/D01_modify_environment starting debug: Running on virt32z. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Aug 4 17:55 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/21062/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/21062/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=859314f02a524ac7b5c1d607ba888b7c LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=21062 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aQDIKJsY/pbuilderrc_FM0U --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aQDIKJsY/b2 --logfile b2/build.log cyvcf2_0.31.1-2.dsc' SUDO_GID=110 SUDO_UID=103 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-23-armmp-lpae #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/21062/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, cython3, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-pytest, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19503 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-coloredlogs; however: Package python3-coloredlogs is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-openssl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-openssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.5-0{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssl-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-click{a} python3-colorama{a} python3-coloredlogs{a} python3-dev{a} python3-humanfriendly{a} python3-iniconfig{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 49.1 MB of archives. After unpacking 180 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf liblocale-gettext-perl armhf 1.07-7 [14.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.4-3 [798 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.4-3 [1795 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.4-1 [26.5 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-4 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.4-3 [1812 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.4-3 [664 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.4-1 [9500 B] Get: 14 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.4-1 [27.6 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-1 [87.8 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-2 [1376 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf cython3 armhf 3.0.10+dfsg-5+b1 [2194 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.16 [88.6 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 37 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf debhelper all 13.16 [891 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 70.3.0-2 [264 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 70.3.0-2 [504 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20240603 [109 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf help2man armhf 1.49.3 [198 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libbz2-dev armhf 1.0.8-5.1 [28.3 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 56 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-2 [162 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.62.1-2 [63.7 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.4.0-1 [55.1 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.6.0-1 [118 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.6.0-1 [17.1 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-6 [199 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.8.0-4 [404 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libcurl4-gnutls-dev armhf 8.8.0-4 [524 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libdeflate-dev armhf 1.20-1 [44.0 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libexpat1-dev armhf 2.6.2-1 [140 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.0-1+b1 [61.3 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-1 [399 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf liblzma-dev armhf 5.6.2-2 [288 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libhts-dev armhf 1.20+ds-1 [1611 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 7.3.7-3 [154 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libpython3.12t64 armhf 3.12.4-3 [1824 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libpython3.12-dev armhf 3.12.4-3 [3762 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libpython3-dev armhf 3.12.4-1 [9732 B] Get: 86 http://deb.debian.org/debian trixie/main armhf libpython3-all-dev armhf 3.12.4-1 [1064 B] Get: 87 http://deb.debian.org/debian trixie/main armhf libssl-dev armhf 3.2.2-1 [2351 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.12.4-1 [1044 B] Get: 89 http://deb.debian.org/debian trixie/main armhf python3.12-dev armhf 3.12.4-3 [499 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf python3-dev armhf 3.12.4-1 [26.2 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf python3-all-dev armhf 3.12.4-1 [1068 B] Get: 92 http://deb.debian.org/debian trixie/main armhf python3-colorama all 0.4.6-4 [36.2 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf python3-click all 8.1.7-2 [94.3 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf python3-humanfriendly all 10.0-5 [85.4 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf python3-coloredlogs all 15.0.1-1 [47.4 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 97 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.26.4+ds-11 [3340 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.1-1 [45.8 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf python3-pytest all 8.2.2-2 [248 kB] Fetched 49.1 MB in 1s (39.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19503 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../libpython3.12-minimal_3.12.4-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.4-3) ... Selecting previously unselected package libexpat1:armhf. 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../6-libpython3.12-stdlib_3.12.4-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.4-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../7-python3.12_3.12.4-3_armhf.deb ... Unpacking python3.12 (3.12.4-3) ... 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Setting up libbrotli1:armhf (1.1.0-2+b4) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up libpsl5t64:armhf (0.21.2-1.1) ... Setting up libnghttp2-14:armhf (1.62.1-2) ... Setting up libdeflate0:armhf (1.20-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:armhf (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-2) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Aug 4 17:56:10 UTC 2024. Universal Time is now: Sun Aug 4 17:56:10 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libexpat1-dev:armhf (2.6.2-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libssl-dev:armhf (3.2.2-1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-6) ... Setting up libgfortran5:armhf (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libnghttp3-9:armhf (1.4.0-1) ... Setting up liblzma-dev:armhf (5.6.2-2) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:armhf (1.6.0-1) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libssh2-1t64:armhf (1.11.0-6) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libdeflate-dev:armhf (1.20-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.6.0-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:armhf (1.0.8-5.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libjs-sphinxdoc (7.3.7-3) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libpython3.12-stdlib:armhf (3.12.4-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3.12 (3.12.4-3) ... Setting up libcurl3t64-gnutls:armhf (8.8.0-4) ... Setting up libcurl4-gnutls-dev:armhf (8.8.0-4) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12t64:armhf (3.12.4-3) ... Setting up libhts3t64:armhf (1.20+ds-1) ... Setting up libpython3-stdlib:armhf (3.12.4-1) ... Setting up libhts-dev:armhf (1.20+ds-1) ... Setting up debhelper (13.16) ... Setting up python3 (3.12.4-1) ... Setting up libpython3.12-dev:armhf (3.12.4-3) ... Setting up python3-packaging (24.1-1) ... Setting up python3-humanfriendly (10.0-5) ... Setting up python3.12-dev (3.12.4-3) ... Setting up cython3 (3.0.10+dfsg-5+b1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-pkg-resources (70.3.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:armhf (3.12.4-1) ... Setting up python3-setuptools (70.3.0-2) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-pytest (8.2.2-2) ... Setting up python3-all (3.12.4-1) ... Setting up python3-click (8.1.7-2) ... Setting up libpython3-all-dev:armhf (3.12.4-1) ... Setting up python3-dev (3.12.4-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up dh-python (6.20240603) ... Setting up python3-all-dev (3.12.4-1) ... Processing triggers for libc-bin (2.39-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/21062/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/21062/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/cyvcf2-0.31.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cyvcf2_0.31.1-2_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.31.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from cyvcf2-0.31.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py clean warning: cyvcf2/cyvcf2.pyx:1377:36: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2079:17: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2278:29: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2350:15: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running clean removing '/build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-cyvcf2.substvars debian/files rm -fr -- debian/python3-cyvcf2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) rm -rf cyvcf2.egg-info cyvcf2/cyvcf2.c __o.vcf find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config warning: cyvcf2/cyvcf2.pyx:1377:36: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2079:17: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2278:29: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2350:15: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.12 I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt writing manifest file 'cyvcf2.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL building 'cyvcf2.cyvcf2' extension creating build creating build/temp.linux-armv7l-cpython-312 creating build/temp.linux-armv7l-cpython-312/cyvcf2 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/python3/dist-packages/numpy/core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/cyvcf2.c -o build/temp.linux-armv7l-cpython-312/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:1266: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/python3/dist-packages/numpy/core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/helpers.c -o build/temp.linux-armv7l-cpython-312/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/cyvcf2/cyvcf2.o build/temp.linux-armv7l-cpython-312/cyvcf2/helpers.o -L/usr/lib/arm-linux-gnueabihf -lhts -o /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-arm-linux-gnueabihf.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' echo "cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually" cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually for tdir in .pybuild/cpython3_* ; do \ cp -a cyvcf2/tests ${tdir}/build/cyvcf2 ; \ done dh_auto_test pybuild --test --test-pytest -i python{version} -p 3.12 I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.4, pytest-8.2.2, pluggy-1.5.0 rootdir: /build/reproducible-path/cyvcf2-0.31.1 configfile: setup.cfg collected 112 items cyvcf2/tests/test_cli.py . [ 0%] cyvcf2/tests/test_hemi.py . [ 1%] cyvcf2/tests/test_reader.py ............................................ [ 41%] ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] ============================= 112 passed in 2.94s ============================== rm -fr -- /tmp/dh-xdg-rundir-gah_6Sxi # clean up after testing find . -name out.vcf -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-cyvcf2.substvars rm -fr -- debian/.debhelper/generated/python3-cyvcf2/ debian/python3-cyvcf2/ debian/tmp/ dh_auto_install --destdir=debian/python3-cyvcf2/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 pybuild --install -i python{version} -p 3.12 --dest-dir /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL running install_lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-312-pytest-8.2.2.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-312-pytest-8.2.2.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-312-pytest-8.2.2.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-312-pytest-8.2.2.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/cli.py to cli.cpython-312.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2-0.31.1.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' dh_numpy3 mv debian/python3-cyvcf2.substvars.new debian/python3-cyvcf2.substvars dh_install make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/copyright debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/.debhelper/generated/python3-cyvcf2/dh_installchangelogs.dch.trimmed debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog.Debian install -p -m0644 ./CHANGES.md debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' PATH=$PATH:/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin \ PYTHONPATH=/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/ \ help2man --no-info \ --name="fast parsing of VCF and BCF including region-queries" \ --version-string=0.31.1 cyvcf2 > debian/cyvcf2.1 dh_installman install -m0755 -d debian/python3-cyvcf2/usr/share/man/man1/ install -p -m0644 ./debian/cyvcf2.1 debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 mv debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1.dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 chmod 0644 -- debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240603 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.12 (default=3.12) D: dh_python3 debhelper:174: source=cyvcf2, binary packages=['python3-cyvcf2'] D: dh_python3 dh_python3:204: processing package python3-cyvcf2... D: dh_python3 fs:50: moving files from debian/python3-cyvcf2/usr/lib/python3.12/dist-packages to debian/python3-cyvcf2/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package python3-cyvcf2 details = {'requires.txt': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.31.1.egg-info/requires.txt'}, 'egg-info': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.31.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-cyvcf2 D: dh_python3 pydist:173: trying to find dependency for click (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for coloredlogs (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for numpy>=1.16.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:253: D={'python3 (<< 3.13)', 'python3-numpy', 'python3-coloredlogs', 'python3 (>= 3.12~)', 'python3-click', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-cyvcf2 chmod a-x usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 gzip -9nf usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 cd '/build/reproducible-path/cyvcf2-0.31.1' dh_fixperms -O--buildsystem=pybuild find debian/python3-cyvcf2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cyvcf2/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cyvcf2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cyvcf2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cyvcf2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz -- debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-arm-linux-gnueabihf.so dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-arm-linux-gnueabihf.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/67/69dce7583201bc05016b8b929f6242661a5bae.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/67/69dce7583201bc05016b8b929f6242661a5bae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/67/69dce7583201bc05016b8b929f6242661a5bae.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc ln -s python3-cyvcf2 debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc/python3-cyvcf2-dbgsym install -m0755 -d debian/.debhelper/python3-cyvcf2 dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-cyvcf2/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN dpkg-shlibdeps -Tdebian/python3-cyvcf2.substvars debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-arm-linux-gnueabihf.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/postinst cat debian/python3-cyvcf2.postinst.debhelper >> debian/python3-cyvcf2/DEBIAN/postinst chmod 0755 -- debian/python3-cyvcf2/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/prerm cat debian/python3-cyvcf2.prerm.debhelper >> debian/python3-cyvcf2/DEBIAN/prerm chmod 0755 -- debian/python3-cyvcf2/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN echo misc:Depends= >> debian/python3-cyvcf2.substvars echo misc:Pre-Depends= >> debian/python3-cyvcf2.substvars install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/.debhelper/python3-cyvcf2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cyvcf2-dbgsym "-DDepends=python3-cyvcf2 (= \${binary:Version})" "-DDescription=debug symbols for python3-cyvcf2" -DBuild-Ids=6769dce7583201bc05016b8b929f6242661a5bae -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/python3-cyvcf2 chmod 0644 -- debian/python3-cyvcf2/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN cd debian/python3-cyvcf2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-cyvcf2/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cyvcf2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-cyvcf2 .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cyvcf2/dbgsym-root .. dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.31.1-2_armhf.deb'. dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.31.1-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../cyvcf2_0.31.1-2_armhf.buildinfo dpkg-genchanges --build=binary -O../cyvcf2_0.31.1-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from cyvcf2-0.31.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/21062/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/21062/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/21062 and its subdirectories I: Current time: Mon Aug 5 07:59:03 +14 2024 I: pbuilder-time-stamp: 1722794343