I: pbuilder: network access will be disabled during build
I: Current time: Sun Dec 22 02:12:29 +14 2024
I: pbuilder-time-stamp: 1734783149
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [biomaj3_3.1.24-2.dsc]
I: copying [./biomaj3_3.1.24.orig.tar.xz]
I: copying [./biomaj3_3.1.24-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sat Dec 14 19:50:09 2024 
gpgv:                using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
gpgv:                issuer "tchet@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./biomaj3_3.1.24-2.dsc: no acceptable signature found
dpkg-source: info: extracting biomaj3 in biomaj3-3.1.24
dpkg-source: info: unpacking biomaj3_3.1.24.orig.tar.xz
dpkg-source: info: unpacking biomaj3_3.1.24-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_remove_drmaa.patch
dpkg-source: info: applying remove_mock.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/29306/tmp/hooks/D01_modify_environment starting
debug: Running on ff4a.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Dec 21 12:12 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/29306/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/29306/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
  BASH_VERSION='5.2.37(1)-release'
  BUILDDIR=/build/reproducible-path
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=armhf
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
  DIRSTACK=()
  DISTRIBUTION=trixie
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=arm
  HOST_ARCH=armhf
  IFS=' 	
  '
  INVOCATION_ID=6f279a3255e941b0bdaff2bc665e04e5
  LANG=C
  LANGUAGE=it_CH:it
  LC_ALL=C
  MACHTYPE=arm-unknown-linux-gnueabihf
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnueabihf
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=29306
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D3XospWt/pbuilderrc_uorM --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D3XospWt/b2 --logfile b2/build.log biomaj3_3.1.24-2.dsc'
  SUDO_GID=113
  SUDO_UID=107
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://10.0.0.15:3142/
I: uname -a
  Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/29306/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-bcrypt, python3-pytest, python3-pymongo, python3-redis, python3-setuptools, python3-yapsy, python3-biomaj3-core, python3-biomaj3-zipkin, python3-biomaj3-download, python3-biomaj3-user, python3-biomaj3-process
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19681 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
  Package dh-sequence-python3 is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all; however:
  Package python3-all is not installed.
 pbuilder-satisfydepends-dummy depends on python3-bcrypt; however:
  Package python3-bcrypt is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pytest; however:
  Package python3-pytest is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pymongo; however:
  Package python3-pymongo is not installed.
 pbuilder-satisfydepends-dummy depends on python3-redis; however:
  Package python3-redis is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on python3-yapsy; however:
  Package python3-yapsy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however:
  Package python3-biomaj3-core is not installed.
 pbuilder-satisfydepends-dummy depends on python3-biomaj3-zipkin; however:
  Package python3-biomaj3-zipkin is not installed.
 pbuilder-satisfydepends-dummy depends on python3-biomaj3-download; however:
  Package python3-biomaj3-download is not installed.
 pbuilder-satisfydepends-dummy depends on python3-biomaj3-user; however:
  Package python3-biomaj3-user is not installed.
 pbuilder-satisfydepends-dummy depends on python3-biomaj3-process; however:
  Package python3-biomaj3-process is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpipeline1{a} libprotobuf32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-async-timeout{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-biomaj3-download{a} python3-biomaj3-process{a} python3-biomaj3-user{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-consul{a} python3-decorator{a} python3-defusedxml{a} python3-deprecated{a} python3-dnspython{a} python3-elasticsearch{a} python3-flask{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-pluggy{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pyasn1{a} python3-pycurl{a} python3-pymongo{a} python3-pytest{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-six{a} python3-tabulate{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-wrapt{a} python3-yaml{a} python3-yapsy{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pygments python3-pyinotify python3-pymongo-ext python3-simplejson wget 
0 packages upgraded, 133 newly installed, 0 to remove and 0 not upgraded.
Need to get 34.9 MB of archives. After unpacking 135 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.8-3 [802 kB]
Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB]
Get: 3 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.8-3 [1794 kB]
Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB]
Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-4 [256 kB]
Get: 8 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB]
Get: 9 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2~rc1-2 [22.9 kB]
Get: 10 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB]
Get: 11 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B]
Get: 12 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB]
Get: 13 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB]
Get: 14 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 15 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB]
Get: 16 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB]
Get: 17 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-6 [69.4 kB]
Get: 18 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-6 [146 kB]
Get: 19 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.8-3 [1824 kB]
Get: 20 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.8-3 [677 kB]
Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B]
Get: 22 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.6-1 [27.8 kB]
Get: 23 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 24 http://deb.debian.org/debian trixie/main armhf openssl armhf 3.3.2-2 [1348 kB]
Get: 25 http://deb.debian.org/debian trixie/main armhf ca-certificates all 20240203 [158 kB]
Get: 26 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB]
Get: 27 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB]
Get: 28 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB]
Get: 29 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-3 [195 kB]
Get: 30 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB]
Get: 31 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-6 [1091 kB]
Get: 32 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-12 [83.9 kB]
Get: 33 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 34 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 35 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB]
Get: 36 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB]
Get: 37 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 38 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 39 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-3 [723 kB]
Get: 40 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB]
Get: 41 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB]
Get: 42 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 43 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 44 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 45 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 46 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB]
Get: 47 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 48 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB]
Get: 49 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB]
Get: 50 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-3 [1488 kB]
Get: 51 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 52 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 53 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB]
Get: 54 http://deb.debian.org/debian trixie/main armhf python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 55 http://deb.debian.org/debian trixie/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 56 http://deb.debian.org/debian trixie/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 57 http://deb.debian.org/debian trixie/main armhf python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 58 http://deb.debian.org/debian trixie/main armhf python3-inflect all 7.3.1-2 [32.4 kB]
Get: 59 http://deb.debian.org/debian trixie/main armhf python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 60 http://deb.debian.org/debian trixie/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 61 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 75.2.0-1 [213 kB]
Get: 62 http://deb.debian.org/debian trixie/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 63 http://deb.debian.org/debian trixie/main armhf python3-zipp all 3.21.0-1 [10.6 kB]
Get: 64 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 75.2.0-1 [731 kB]
Get: 65 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20241217 [113 kB]
Get: 66 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB]
Get: 67 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB]
Get: 68 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB]
Get: 69 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB]
Get: 70 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB]
Get: 71 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB]
Get: 72 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB]
Get: 73 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB]
Get: 74 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB]
Get: 75 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB]
Get: 76 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB]
Get: 77 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.11.1-1 [311 kB]
Get: 78 http://deb.debian.org/debian trixie/main armhf libprotobuf32t64 armhf 3.21.12-10+b1 [871 kB]
Get: 79 http://deb.debian.org/debian trixie/main armhf libyaml-0-2 armhf 0.2.5-1+b2 [45.4 kB]
Get: 80 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.12.6-1 [1040 B]
Get: 81 http://deb.debian.org/debian trixie/main armhf python3-async-timeout all 4.0.3-1 [7660 B]
Get: 82 http://deb.debian.org/debian trixie/main armhf python3-bcrypt armhf 4.2.0-2.1 [214 kB]
Get: 83 http://deb.debian.org/debian trixie/main armhf python3-certifi all 2024.8.30+dfsg-1 [9576 B]
Get: 84 http://deb.debian.org/debian trixie/main armhf python3-urllib3 all 2.2.3-4 [112 kB]
Get: 85 http://deb.debian.org/debian trixie/main armhf python3-elasticsearch all 7.17.6-1 [113 kB]
Get: 86 http://deb.debian.org/debian trixie/main armhf python3-charset-normalizer armhf 3.4.0-1+b1 [126 kB]
Get: 87 http://deb.debian.org/debian trixie/main armhf python3-idna all 3.8-2 [41.6 kB]
Get: 88 http://deb.debian.org/debian trixie/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get: 89 http://deb.debian.org/debian trixie/main armhf python3-requests all 2.32.3+dfsg-1 [71.9 kB]
Get: 90 http://deb.debian.org/debian trixie/main armhf python3-biomaj3-core all 3.0.28-3 [25.1 kB]
Get: 91 http://deb.debian.org/debian trixie/main armhf python3-py-zipkin all 1.2.8-2 [36.4 kB]
Get: 92 http://deb.debian.org/debian trixie/main armhf python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB]
Get: 93 http://deb.debian.org/debian trixie/main armhf python3-consul all 1.5.1+dfsg-1 [22.7 kB]
Get: 94 http://deb.debian.org/debian trixie/main armhf python3-blinker all 1.9.0-1 [12.6 kB]
Get: 95 http://deb.debian.org/debian trixie/main armhf python3-colorama all 0.4.6-4 [36.2 kB]
Get: 96 http://deb.debian.org/debian trixie/main armhf python3-click all 8.1.7-2 [94.3 kB]
Get: 97 http://deb.debian.org/debian trixie/main armhf python3-itsdangerous all 2.2.0-1 [18.0 kB]
Get: 98 http://deb.debian.org/debian trixie/main armhf python3-markupsafe armhf 2.1.5-1+b2 [13.4 kB]
Get: 99 http://deb.debian.org/debian trixie/main armhf python3-jinja2 all 3.1.3-1.1 [120 kB]
Get: 100 http://deb.debian.org/debian trixie/main armhf python3-werkzeug all 3.1.3-2 [207 kB]
Get: 101 http://deb.debian.org/debian trixie/main armhf python3-flask all 3.1.0-2 [106 kB]
Get: 102 http://deb.debian.org/debian trixie/main armhf python3-ftputil all 5.1.0-1 [40.4 kB]
Get: 103 http://deb.debian.org/debian trixie/main armhf python3-humanfriendly all 10.0-6 [85.6 kB]
Get: 104 http://deb.debian.org/debian trixie/main armhf python3-defusedxml all 0.7.1-3 [43.4 kB]
Get: 105 http://deb.debian.org/debian trixie/main armhf python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB]
Get: 106 http://deb.debian.org/debian trixie/main armhf python3-prettytable all 3.12.0-1 [39.5 kB]
Get: 107 http://deb.debian.org/debian trixie/main armhf python3-six all 1.17.0-1 [16.5 kB]
Get: 108 http://deb.debian.org/debian trixie/main armhf python3-irodsclient all 2.2.0-1 [209 kB]
Get: 109 http://deb.debian.org/debian trixie/main armhf python3-pika all 1.3.2-1 [125 kB]
Get: 110 http://deb.debian.org/debian trixie/main armhf python3-decorator all 5.1.1-5 [15.1 kB]
Get: 111 http://deb.debian.org/debian trixie/main armhf python3-prometheus-client all 0.19.0+ds1-1 [35.0 kB]
Get: 112 http://deb.debian.org/debian trixie/main armhf python3-protobuf armhf 3.21.12-10+b1 [259 kB]
Get: 113 http://deb.debian.org/debian trixie/main armhf python3-pycurl armhf 7.45.4-1 [73.6 kB]
Get: 114 http://deb.debian.org/debian trixie/main armhf python3-wrapt armhf 1.15.0-3+b1 [41.4 kB]
Get: 115 http://deb.debian.org/debian trixie/main armhf python3-deprecated all 1.2.15-1 [14.5 kB]
Get: 116 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.2-1 [55.3 kB]
Get: 117 http://deb.debian.org/debian trixie/main armhf python3-redis all 4.3.4-4 [185 kB]
Get: 118 http://deb.debian.org/debian trixie/main armhf python3-simpleeval all 1.0.3-1 [24.0 kB]
Get: 119 http://deb.debian.org/debian trixie/main armhf python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB]
Get: 120 http://deb.debian.org/debian trixie/main armhf python3-yaml armhf 6.0.2-1+b1 [158 kB]
Get: 121 http://deb.debian.org/debian trixie/main armhf python3-biomaj3-download all 3.2.12-1 [49.4 kB]
Get: 122 http://deb.debian.org/debian trixie/main armhf python3-biomaj3-process all 3.0.19-2 [25.2 kB]
Get: 123 http://deb.debian.org/debian trixie/main armhf python3-pyasn1 all 0.6.0-1 [70.0 kB]
Get: 124 http://deb.debian.org/debian trixie/main armhf python3-ldap3 all 2.9.1-2 [235 kB]
Get: 125 http://deb.debian.org/debian trixie/main armhf python3-tabulate all 0.9.0-1 [45.9 kB]
Get: 126 http://deb.debian.org/debian trixie/main armhf python3-biomaj3-user all 3.0.12-2 [19.7 kB]
Get: 127 http://deb.debian.org/debian trixie/main armhf python3-bson all 4.10.1-3 [87.0 kB]
Get: 128 http://deb.debian.org/debian trixie/main armhf python3-dnspython all 2.6.1-1 [161 kB]
Get: 129 http://deb.debian.org/debian trixie/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get: 130 http://deb.debian.org/debian trixie/main armhf python3-pluggy all 1.5.0-1 [26.9 kB]
Get: 131 http://deb.debian.org/debian trixie/main armhf python3-pymongo all 4.10.1-3 [272 kB]
Get: 132 http://deb.debian.org/debian trixie/main armhf python3-pytest all 8.3.3-1 [249 kB]
Get: 133 http://deb.debian.org/debian trixie/main armhf python3-yapsy all 1.12.2-3 [30.4 kB]
Fetched 34.9 MB in 3s (13.8 MB/s)
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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Setting up media-types (10.1.0) ...
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Setting up libbrotli1:armhf (1.1.0-2+b6) ...
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Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ...
Setting up libnghttp2-14:armhf (1.64.0-1) ...
Setting up gettext-base (0.22.5-3) ...
Setting up m4 (1.4.19-4) ...
Setting up libcom-err2:armhf (1.47.2~rc1-2) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:armhf (0.192-4) ...
Setting up libkrb5support0:armhf (1.21.3-3) ...
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Setting up tzdata (2024b-4) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Sat Dec 21 12:13:34 UTC 2024.
Universal Time is now:  Sat Dec 21 12:13:34 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up autotools-dev (20220109.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ...
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Setting up netbase (6.4) ...
Setting up libngtcp2-16:armhf (1.9.1-1) ...
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Setting up libssh2-1t64:armhf (1.11.1-1) ...
Setting up openssl (3.3.2-2) ...
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Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
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Setting up po-debconf (1.0.21+nmu1) ...
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Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libnsl2:armhf (1.3.0-3+b3) ...
Setting up libpython3.12-stdlib:armhf (3.12.8-3) ...
Setting up python3.12 (3.12.8-3) ...
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Setting up python3 (3.12.6-1) ...
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Setting up python3-markupsafe (2.1.5-1+b2) ...
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Setting up python3-six (1.17.0-1) ...
Setting up python3-bson (4.10.1-3) ...
Setting up python3-decorator (5.1.1-5) ...
Setting up python3-jinja2 (3.1.3-1.1) ...
Setting up python3-pycurl (7.45.4-1) ...
Setting up python3-packaging (24.2-1) ...
Setting up python3-wcwidth (0.2.13+dfsg1-1) ...
Setting up python3-humanfriendly (10.0-6) ...
Setting up python3-certifi (2024.8.30+dfsg-1) ...
Setting up python3-werkzeug (3.1.3-2) ...
Setting up python3-idna (3.8-2) ...
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Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-urllib3 (2.2.3-4) ...
Setting up python3-pluggy (1.5.0-1) ...
Setting up python3-dnspython (2.6.1-1) ...
Setting up python3-pyasn1 (0.6.0-1) ...
Setting up python3-py-zipkin (1.2.8-2) ...
Setting up python3-protobuf (3.21.12-10+b1) ...
Setting up python3-pymongo (4.10.1-3) ...
Setting up python3-prettytable (3.12.0-1) ...
Setting up python3-deprecated (1.2.15-1) ...
Setting up python3-yapsy (1.12.2-3) ...
Setting up python3-blinker (1.9.0-1) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up python3-elasticsearch (7.17.6-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-ftputil (5.1.0-1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3-colorama (0.4.6-4) ...
Setting up python3-defusedxml (0.7.1-3) ...
Setting up python3-charset-normalizer (3.4.0-1+b1) ...
Setting up python3-pika (1.3.2-1) ...
Setting up python3-pytest (8.3.3-1) ...
Setting up python3-tenacity (8.4.2+really8.4.1-2) ...
Setting up python3-bcrypt (4.2.0-2.1) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up python3-tabulate (0.9.0-1) ...
Setting up python3-itsdangerous (2.2.0-1) ...
Setting up python3-all (3.12.6-1) ...
Setting up python3-yaml (6.0.2-1+b1) ...
Setting up python3-click (8.1.7-2) ...
Setting up python3-ldap3 (2.9.1-2) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-prometheus-client (0.19.0+ds1-1) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-redis (4.3.4-4) ...
Setting up python3-irodsclient (2.2.0-1) ...
/usr/lib/python3/dist-packages/irods/test/admin_test.py:380: SyntaxWarning: invalid escape sequence '\]'
  new_password = '''abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z'''
/usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]'
  new_comment = '''comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170
/usr/lib/python3/dist-packages/irods/test/admin_test.py:426: SyntaxWarning: invalid escape sequence '\]'
  new_info = '''info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170
/usr/lib/python3/dist-packages/irods/test/data_obj_test.py:38: SyntaxWarning: invalid escape sequence '\.'
  localhost_with_optional_domain_pattern = re.compile('localhost(\.\S\S*)?$')
/usr/lib/python3/dist-packages/irods/test/data_obj_test.py:335: SyntaxWarning: invalid escape sequence '\s'
  NumThreadsRegex = re.compile(u'^num_threads\s*=\s*(\d+)',re.MULTILINE)
/usr/lib/python3/dist-packages/irods/test/data_obj_test.py:463: SyntaxWarning: invalid escape sequence '\s'
  NO_CHECKSUM_MESSAGE_PATTERN = re.compile( 'No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]', re.IGNORECASE)
/usr/lib/python3/dist-packages/irods/test/data_obj_test.py:857: SyntaxWarning: invalid escape sequence '\S'
  find_iterator = itertools.chain( re.finditer(u'redirect_to_host = (\S+)', search_text),
/usr/lib/python3/dist-packages/irods/test/data_obj_test.py:858: SyntaxWarning: invalid escape sequence '\S'
  re.finditer(u'target_host = (\S+)', search_text) )
/usr/lib/python3/dist-packages/irods/test/rule_test.py:371: SyntaxWarning: invalid escape sequence '\['
  self.assertRegexpMatches (lines[0], '.*\[Hello world!\]')
/usr/lib/python3/dist-packages/irods/test/rule_test.py:392: SyntaxWarning: invalid escape sequence '\['
  self.assertRegexpMatches (lines[0], '\[STRING\]\[\]')
/usr/lib/python3/dist-packages/irods/test/rule_test.py:393: SyntaxWarning: invalid escape sequence '\['
  self.assertRegexpMatches (lines[1], '\[STRING\]\[\]')
/usr/lib/python3/dist-packages/irods/test/rule_test.py:399: SyntaxWarning: invalid escape sequence '\['
  self.assertRegexpMatches (lines[0], '\[INTEGER\]\[5\]')
/usr/lib/python3/dist-packages/irods/test/rule_test.py:400: SyntaxWarning: invalid escape sequence '\['
  self.assertRegexpMatches (lines[1], '\[STRING\]\[A String\]')
Setting up python3-pkg-resources (75.2.0-1) ...
Setting up python3-setuptools (75.2.0-1) ...
Setting up python3-flask (3.1.0-2) ...
Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up python3-requests (2.32.3+dfsg-1) ...
Setting up python3-consul (1.5.1+dfsg-1) ...
Setting up dh-python (6.20241217) ...
Setting up python3-biomaj3-zipkin (0.2.2-3) ...
Setting up python3-biomaj3-core (3.0.28-3) ...
Setting up python3-biomaj3-download (3.2.12-1) ...
Setting up python3-biomaj3-user (3.0.12-2) ...
Setting up python3-biomaj3-process (3.0.19-2) ...
Processing triggers for libc-bin (2.40-4) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/29306/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for trixie
I: user script /srv/workspace/pbuilder/29306/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/biomaj3-3.1.24/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../biomaj3_3.1.24-2_source.changes
dpkg-buildpackage: info: source package biomaj3
dpkg-buildpackage: info: source version 3.1.24-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Alexandre Detiste <tchet@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
running clean
removing '/build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
running config
   dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj
copying biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj
copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj
copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj
copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj
copying biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj
copying biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj
copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj
copying biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj
creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process
copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process
copying biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process
copying biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process
running egg_info
creating biomaj.egg-info
writing biomaj.egg-info/PKG-INFO
writing dependency_links to biomaj.egg-info/dependency_links.txt
writing requirements to biomaj.egg-info/requires.txt
writing top-level names to biomaj.egg-info/top_level.txt
writing manifest file 'biomaj.egg-info/SOURCES.txt'
reading manifest file 'biomaj.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.txt' under directory 'biomaj'
adding license file 'LICENSE'
writing manifest file 'biomaj.egg-info/SOURCES.txt'
running build_scripts
creating build/scripts-3.12
copying scripts/biomaj_migrate_database.py -> build/scripts-3.12
changing mode of build/scripts-3.12/biomaj_migrate_database.py from 664 to 775
dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   dh_installdirs -O--buildsystem=pybuild
   dh_auto_install --destdir=debian/python3-biomaj3/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
running egg_info
writing biomaj.egg-info/PKG-INFO
writing dependency_links to biomaj.egg-info/dependency_links.txt
writing requirements to biomaj.egg-info/requires.txt
writing top-level names to biomaj.egg-info/top_level.txt
reading manifest file 'biomaj.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.txt' under directory 'biomaj'
adding license file 'LICENSE'
writing manifest file 'biomaj.egg-info/SOURCES.txt'
running build_scripts
running install_lib
creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages
creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj
creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process
copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/schema_version.py to schema_version.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/bank.py to bank.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/options.py to options.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/notify.py to notify.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/session.py to session.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/processfactory.py to processfactory.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/metaprocess.py to metaprocess.cpython-312.pyc
byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/workflow.py to workflow.cpython-312.pyc
running install_egg_info
Copying biomaj.egg-info to /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj-3.1.24.egg-info
Skipping SOURCES.txt
running install_scripts
creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin
copying build/scripts-3.12/biomaj_migrate_database.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin
changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 775
   debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/biomaj3-3.1.24'
dh_install
sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py
make[1]: Leaving directory '/build/reproducible-path/biomaj3-3.1.24'
   dh_installdocs -O--buildsystem=pybuild
   dh_installchangelogs -O--buildsystem=pybuild
   debian/rules override_dh_installexamples
make[1]: Entering directory '/build/reproducible-path/biomaj3-3.1.24'
dh_installexamples
sed -i '1s;^;#!/bin/bash\n;' debian/python3-biomaj3/usr/share/doc/python3-biomaj3/examples/tools/process/concat.sh
chmod -x debian/python3-biomaj3/usr/share/doc/python3-biomaj3/examples/global.properties.example
make[1]: Leaving directory '/build/reproducible-path/biomaj3-3.1.24'
   dh_python3 -O--buildsystem=pybuild
I: dh_python3 pydist:316: Cannot find package that provides py_bcrypt. Please add package that provides it to Build-Depends or add "py_bcrypt python3-py-bcrypt" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info.
   dh_installsystemduser -O--buildsystem=pybuild
   dh_lintian -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
   dh_fixperms -O--buildsystem=pybuild
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
   dh_gencontrol -O--buildsystem=pybuild
dpkg-gencontrol: warning: Recommends field of package python3-biomaj3: substitution variable ${python3:Recommends} used, but is not defined
dpkg-gencontrol: warning: Suggests field of package python3-biomaj3: substitution variable ${python3:Suggests} used, but is not defined
   dh_md5sums -O--buildsystem=pybuild
   dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-biomaj3' in '../python3-biomaj3_3.1.24-2_all.deb'.
 dpkg-genbuildinfo --build=binary -O../biomaj3_3.1.24-2_armhf.buildinfo
 dpkg-genchanges --build=binary -O../biomaj3_3.1.24-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/29306/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/29306/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/29306 and its subdirectories
I: Current time: Sun Dec 22 02:14:56 +14 2024
I: pbuilder-time-stamp: 1734783296