I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 29 02:30:17 +14 2024 I: pbuilder-time-stamp: 1714307417 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqmagick_0.8.6-2.dsc] I: copying [./seqmagick_0.8.6.orig.tar.gz] I: copying [./seqmagick_0.8.6-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Mar 17 17:21:15 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqmagick_0.8.6-2.dsc: no acceptable signature found dpkg-source: info: extracting seqmagick in seqmagick-0.8.6 dpkg-source: info: unpacking seqmagick_0.8.6.orig.tar.gz dpkg-source: info: unpacking seqmagick_0.8.6-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying biopython_1.71_dual_coding_support.patch dpkg-source: info: applying pytest.patch dpkg-source: info: applying replace-ungap.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2099339/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 28 12:30 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2099339/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2099339/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=0158e163d5884925a3614d6f1b0a18a4 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2099339 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Eoix36v3/pbuilderrc_MR3t --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Eoix36v3/b2 --logfile b2/build.log seqmagick_0.8.6-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 23 11:23 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2099339/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-pytest, python3-biopython, python3-pygtrie dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19940 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pygtrie; however: Package python3-pygtrie is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-distutils{a} python3-freetype{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygtrie{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 113 newly installed, 0 to remove and 0 not upgraded. Need to get 64.0 MB of archives. After unpacking 238 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.11-minimal arm64 3.11.8-1 [811 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.11-minimal arm64 3.11.8-1 [1848 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.11.6-1 [26.2 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1781 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 python3.11 arm64 3.11.8-1 [597 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.11.6-1 [9224 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.11.6-1 [26.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.2-1 [800 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.2-1 [1983 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-2+b1 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libmagic1 arm64 1:5.45-2+b1 [100 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-2+b1 [43.2 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.39.3-6 [90.0 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 python3-distutils all 3.12.3-1 [131 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20240422 [107 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1 [22.2 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.2+dfsg-1+b4 [408 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+6 [85.6 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 62 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.0-1+b1 [478 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.13-3+b1 [71.3 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.78.4-7 [1364 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 8.3.0-2+b1 [2178 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-2+b2 [172 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.14-2+b1 [144 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.2-1 [1872 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.3.2-0.4+b1 [107 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.3.2-0.4+b1 [263 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-4 [307 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.3.2-0.4+b1 [107 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.3.2-0.4+b1 [119 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.2-1 [653 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.11.6-1 [1060 B] Get: 99 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.24.2-2 [4122 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.3.0-2 [552 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 python3-cairo arm64 1.26.0-1 [139 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 python3-freetype all 2.4.0-1 [80.3 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 105 http://deb.debian.org/debian trixie/main arm64 python3-reportlab all 4.1.0-4 [1113 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 python3-biopython arm64 1.81+dfsg-3 [1611 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 110 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.0-1 [45.5 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 python3-pygtrie all 2.2-2 [16.8 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 7.4.4-3 [239 kB] Fetched 64.0 MB in 0s (193 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19940 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.8-1_arm64.deb ... Unpacking python3.11 (3.11.8-1) ... 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Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libgraphite2-3:arm64 (1.3.14-2) ... Setting up liblcms2-2:arm64 (2.14-2+b1) ... Setting up libpixman-1-0:arm64 (0.42.2-1+b1) ... Setting up libsharpyuv0:arm64 (1.3.2-0.4+b1) ... Setting up libxau6:arm64 (1:1.0.9-1+b1) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up libpython3.12-minimal:arm64 (3.12.2-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:arm64 (1:5.45-2+b1) ... Setting up libdeflate0:arm64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Apr 28 12:30:40 UTC 2024. Universal Time is now: Sun Apr 28 12:30:40 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:arm64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.78.4-7) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.13-3+b1) ... Setting up libimagequant0:arm64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.43-5) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:arm64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.3.2-0.4+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:arm64 (4.5.1+git230720-4) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libwebpmux3:arm64 (1.3.2-0.4+b1) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:arm64 (1.3.2-0.4+b1) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up xml-core (0.19) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up libpython3.12-stdlib:arm64 (3.12.2-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.0-1+b1) ... Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up libpython3-stdlib:arm64 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-pil:arm64 (10.3.0-2) ... Setting up python3-pygtrie (2.2-2) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-all (3.11.6-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-reportlab (4.1.0-4) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2099339/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2099339/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/seqmagick-0.8.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqmagick_0.8.6-2_source.changes dpkg-buildpackage: info: source package seqmagick dpkg-buildpackage: info: source version 0.8.6-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/dist.py:509: SetuptoolsDeprecationWarning: Invalid version: ''. !! ******************************************************************************** The version specified is not a valid version according to PEP 440. This may not work as expected with newer versions of setuptools, pip, and PyPI. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://peps.python.org/pep-0440/ for details. ******************************************************************************** !! self._validate_version(self.metadata.version) running clean removing '/build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/dist.py:509: SetuptoolsDeprecationWarning: Invalid version: ''. !! ******************************************************************************** The version specified is not a valid version according to PEP 440. This may not work as expected with newer versions of setuptools, pip, and PyPI. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://peps.python.org/pep-0440/ for details. ******************************************************************************** !! self._validate_version(self.metadata.version) running clean removing '/build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf seqmagick/data rm -rf seqmagick.egg-info make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/dist.py:509: SetuptoolsDeprecationWarning: Invalid version: ''. !! ******************************************************************************** The version specified is not a valid version according to PEP 440. This may not work as expected with newer versions of setuptools, pip, and PyPI. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://peps.python.org/pep-0440/ for details. ******************************************************************************** !! self._validate_version(self.metadata.version) running config I: pybuild base:311: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/dist.py:509: SetuptoolsDeprecationWarning: Invalid version: ''. !! ******************************************************************************** The version specified is not a valid version according to PEP 440. This may not work as expected with newer versions of setuptools, pip, and PyPI. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://peps.python.org/pep-0440/ for details. ******************************************************************************** !! self._validate_version(self.metadata.version) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/dist.py:509: SetuptoolsDeprecationWarning: Invalid version: ''. !! ******************************************************************************** The version specified is not a valid version according to PEP 440. This may not work as expected with newer versions of setuptools, pip, and PyPI. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://peps.python.org/pep-0440/ for details. ******************************************************************************** !! self._validate_version(self.metadata.version) running build running build_py creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick copying seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick copying seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick copying seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test copying seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test copying seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test copying seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test copying seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test copying seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands copying seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands copying seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands copying seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands copying seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands copying seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands copying seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands copying seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands copying seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/scripts copying seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/scripts copying seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration copying seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration copying seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration copying seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration copying seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration copying seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/dist.py:509: SetuptoolsDeprecationWarning: Invalid version: ''. !! ******************************************************************************** The version specified is not a valid version according to PEP 440. This may not work as expected with newer versions of setuptools, pip, and PyPI. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://peps.python.org/pep-0440/ for details. ******************************************************************************** !! self._validate_version(self.metadata.version) running build running build_py creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick copying seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick copying seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick copying seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test copying seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test copying seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test copying seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test copying seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test copying seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands copying seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands copying seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands copying seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands copying seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands copying seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands copying seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands copying seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands copying seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/scripts copying seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/scripts copying seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration copying seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration copying seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration copying seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration copying seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration copying seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/seqmagick-0.8.6 collected 154 items seqmagick/test/test_subcommands_backtrans_align.py ......... [ 5%] seqmagick/test/test_subcommands_common.py ..................s..... [ 21%] seqmagick/test/test_subcommands_convert.py ...... [ 25%] seqmagick/test/test_subcommands_quality_filter.py ...................... [ 39%] .... [ 42%] seqmagick/test/test_transform.py ....................................... [ 67%] .................... [ 80%] seqmagick/test/integration/test_convert.py .ss.............. [ 91%] seqmagick/test/integration/test_extract_ids.py ..ss.. [ 95%] seqmagick/test/integration/test_info.py ...s [ 98%] seqmagick/test/integration/test_mogrify.py .s. [100%] ======================== 147 passed, 7 skipped in 0.85s ======================== I: pybuild base:311: cd /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/seqmagick-0.8.6 collected 154 items seqmagick/test/test_subcommands_backtrans_align.py ......... [ 5%] seqmagick/test/test_subcommands_common.py ..................s..... [ 21%] seqmagick/test/test_subcommands_convert.py ...... [ 25%] seqmagick/test/test_subcommands_quality_filter.py ...................... [ 39%] .... [ 42%] seqmagick/test/test_transform.py ....................................... [ 67%] .................... [ 80%] seqmagick/test/integration/test_convert.py .ss.............. [ 91%] seqmagick/test/integration/test_extract_ids.py ..ss.. [ 95%] seqmagick/test/integration/test_info.py ...s [ 98%] seqmagick/test/integration/test_mogrify.py .s. [100%] ======================== 147 passed, 7 skipped in 0.74s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/seqmagick/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/dist.py:509: SetuptoolsDeprecationWarning: Invalid version: ''. !! ******************************************************************************** The version specified is not a valid version according to PEP 440. This may not work as expected with newer versions of setuptools, pip, and PyPI. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://peps.python.org/pep-0440/ for details. ******************************************************************************** !! self._validate_version(self.metadata.version) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12 creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/__pycache__/transform.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/__pycache__/fileformat.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/scripts/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/scripts/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/scripts copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/__pycache__/extract_ids.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/__pycache__/mogrify.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/__pycache__/info.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/__pycache__/quality_filter.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/__pycache__/convert.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/__pycache__/backtrans_align.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/__pycache__/test_transform.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/__pycache__/test_subcommands_quality_filter.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/__pycache__/test_subcommands_convert.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/__pycache__/test_subcommands_common.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/__pycache__/test_subcommands_backtrans_align.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/__pycache__/test_mogrify.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/__pycache__/test_info.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/__pycache__/test_extract_ids.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/__pycache__/test_convert.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.12/build/seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/scripts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/scripts/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/common.py to common.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/convert.py to convert.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/extract_ids.py to extract_ids.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/info.py to info.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/mogrify.py to mogrify.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/quality_filter.py to quality_filter.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/subcommands/backtrans_align.py to backtrans_align.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/data/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/test_convert.py to test_convert.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/test_extract_ids.py to test_extract_ids.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/test_info.py to test_info.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/integration/test_mogrify.py to test_mogrify.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/test_subcommands_backtrans_align.py to test_subcommands_backtrans_align.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/test_subcommands_common.py to test_subcommands_common.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/test_subcommands_convert.py to test_subcommands_convert.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/test_subcommands_quality_filter.py to test_subcommands_quality_filter.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/test/test_transform.py to test_transform.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/fileformat.py to fileformat.cpython-312.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick/transform.py to transform.cpython-312.pyc running install_egg_info running egg_info creating seqmagick.egg-info writing seqmagick.egg-info/PKG-INFO writing dependency_links to seqmagick.egg-info/dependency_links.txt writing entry points to seqmagick.egg-info/entry_points.txt writing requirements to seqmagick.egg-info/requires.txt writing top-level names to seqmagick.egg-info/top_level.txt writing manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.png' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'seqmagick.egg-info/SOURCES.txt' Copying seqmagick.egg-info to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.12/dist-packages/seqmagick-0.0.0.egg-info Skipping SOURCES.txt running install_scripts Installing seqmagick script to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/dist.py:509: SetuptoolsDeprecationWarning: Invalid version: ''. !! ******************************************************************************** The version specified is not a valid version according to PEP 440. This may not work as expected with newer versions of setuptools, pip, and PyPI. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://peps.python.org/pep-0440/ for details. ******************************************************************************** !! self._validate_version(self.metadata.version) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11 creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/__pycache__/transform.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/__pycache__/fileformat.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/scripts/__pycache__/cli.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/scripts/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/extract_ids.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/mogrify.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/info.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/quality_filter.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/convert.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/common.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/backtrans_align.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_transform.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_subcommands_quality_filter.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_subcommands_convert.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_subcommands_common.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_subcommands_backtrans_align.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/test_mogrify.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/test_info.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/test_extract_ids.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/test_convert.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.11/build/seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/cli.py to cli.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/common.py to common.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/convert.py to convert.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/extract_ids.py to extract_ids.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/info.py to info.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/mogrify.py to mogrify.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/quality_filter.py to quality_filter.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/backtrans_align.py to backtrans_align.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/test_convert.py to test_convert.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/test_extract_ids.py to test_extract_ids.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/test_info.py to test_info.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/test_mogrify.py to test_mogrify.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_subcommands_backtrans_align.py to test_subcommands_backtrans_align.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_subcommands_common.py to test_subcommands_common.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_subcommands_convert.py to test_subcommands_convert.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_subcommands_quality_filter.py to test_subcommands_quality_filter.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_transform.py to test_transform.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/fileformat.py to fileformat.cpython-311.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/transform.py to transform.cpython-311.pyc running install_egg_info running egg_info writing seqmagick.egg-info/PKG-INFO writing dependency_links to seqmagick.egg-info/dependency_links.txt writing entry points to seqmagick.egg-info/entry_points.txt writing requirements to seqmagick.egg-info/requires.txt writing top-level names to seqmagick.egg-info/top_level.txt reading manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.png' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'seqmagick.egg-info/SOURCES.txt' Copying seqmagick.egg-info to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick-0.0.0.egg-info Skipping SOURCES.txt running install_scripts Installing seqmagick script to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'seqmagick' in '../seqmagick_0.8.6-2_all.deb'. dpkg-genbuildinfo --build=binary -O../seqmagick_0.8.6-2_arm64.buildinfo dpkg-genchanges --build=binary -O../seqmagick_0.8.6-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2099339/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2099339/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2099339 and its subdirectories I: Current time: Mon Apr 29 02:32:08 +14 2024 I: pbuilder-time-stamp: 1714307528