I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 12 20:50:09 -12 2025 I: pbuilder-time-stamp: 1752396609 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 12:45:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1041753/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c1c6ea2447464394adb8b37453a21292' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1041753' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.izD5JAX6/pbuilderrc_iJ7c --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.izD5JAX6/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jul 11 17:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1041753/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19732 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 35.6 MB of archives. After unpacking 141 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.1-8 [95.3 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.2-2.1 [320 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-5 [207 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.8.0-1 [411 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-4 [142 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.29.4-1 [2167 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.29.4-1 [9058 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 googletest all 1.14.0-1 [512 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 56 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 58 http://deb.debian.org/debian trixie/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libedlib1 arm64 1.2.7-5 [16.5 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libedlib-dev arm64 1.2.7-5 [21.7 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libgtest-dev arm64 1.14.0-1+b1 [241 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libspoa7.0.0 arm64 4.1.4-1 [50.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libspoa-dev arm64 4.1.4-1 [9380 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 rampler arm64 2.1.1-1 [19.9 kB] Fetched 35.6 MB in 1s (52.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19732 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_arm64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.1-8_arm64.deb ... Unpacking bsdextrautils (2.40.1-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../17-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../19-libarchive13t64_3.7.2-2.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.2-2.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../21-libkrb5support0_1.20.1-6+b1_arm64.deb ... Unpacking libkrb5support0:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../22-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../23-libk5crypto3_1.20.1-6+b1_arm64.deb ... Unpacking libk5crypto3:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../24-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../25-libkrb5-3_1.20.1-6+b1_arm64.deb ... Unpacking libkrb5-3:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../26-libgssapi-krb5-2_1.20.1-6+b1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../27-libsasl2-modules-db_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../28-libsasl2-2_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../29-libldap-2.5-0_2.5.17+dfsg-1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.17+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../30-libnghttp2-14_1.61.0-1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../31-libpsl5t64_0.21.2-1.1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../32-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb ... 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Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Setting up libedlib-dev:arm64 (1.2.7-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up libarchive13t64:arm64 (3.7.2-2.1) ... Setting up libcurl4t64:arm64 (8.8.0-1) ... Setting up libspoa-dev:arm64 (4.1.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.29.4-1) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done 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-I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (4 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) [----------] 5 tests from RaconInitializeTest (14 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001137 s [racon::Polisher::initialize] loaded sequences 0.066752 s [racon::Polisher::initialize] loaded overlaps 0.000395 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.048700 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.068519 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.085927 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.099438 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.110361 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.120595 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.143111 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.153287 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.161383 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.168483 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.188601 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.188630 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.202416 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.205579 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.219482 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.226796 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.237312 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.248796 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.253796 s [racon::Polisher::initialize] aligning overlaps [====================] 0.263489 s [racon::Polisher::initialize] transformed data into windows 0.003833 s [racon::Polisher::polish] generating consensus [=> ] 0.030281 s [racon::Polisher::polish] generating consensus [==> ] 0.060272 s [racon::Polisher::polish] generating consensus [===> ] 0.085649 s [racon::Polisher::polish] generating consensus [====> ] 0.101686 s [racon::Polisher::polish] generating consensus [=====> ] 0.108296 s [racon::Polisher::polish] generating consensus [======> ] 0.120410 s [racon::Polisher::polish] generating consensus [=======> ] 0.131683 s [racon::Polisher::polish] generating consensus [========> ] 0.142043 s [racon::Polisher::polish] generating consensus [=========> ] 0.151568 s [racon::Polisher::polish] generating consensus [==========> ] 0.177789 s [racon::Polisher::polish] generating consensus [===========> ] 0.201699 s [racon::Polisher::polish] generating consensus [============> ] 0.238666 s [racon::Polisher::polish] generating consensus [=============> ] 0.282404 s [racon::Polisher::polish] generating consensus [==============> ] 0.329207 s [racon::Polisher::polish] generating consensus [===============> ] 0.367362 s [racon::Polisher::polish] generating consensus [================> ] 0.392413 s [racon::Polisher::polish] generating consensus [=================> ] 0.426368 s [racon::Polisher::polish] generating consensus [==================> ] 0.445906 s [racon::Polisher::polish] generating consensus [===================>] 0.465513 s [racon::Polisher::polish] generating consensus [====================] 0.555417 s [racon::Polisher::] total = 0.918739 s [ OK ] RaconPolishingTest.ConsensusWithQualities (930 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000995 s [racon::Polisher::initialize] loaded sequences 0.034815 s [racon::Polisher::initialize] loaded overlaps 0.000414 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.040448 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.067465 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.087134 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.098798 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.113015 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.121555 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.143567 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.153521 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.161558 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.168683 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.181927 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.189929 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.197917 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.201912 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.210048 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.214081 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.217146 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.226082 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.242089 s [racon::Polisher::initialize] aligning overlaps [====================] 0.250119 s [racon::Polisher::initialize] transformed data into windows 0.000421 s [racon::Polisher::polish] generating consensus [=> ] 0.031435 s [racon::Polisher::polish] generating consensus [==> ] 0.060207 s [racon::Polisher::polish] generating consensus [===> ] 0.085700 s [racon::Polisher::polish] generating consensus [====> ] 0.105489 s [racon::Polisher::polish] generating consensus [=====> ] 0.119713 s [racon::Polisher::polish] generating consensus [======> ] 0.133566 s [racon::Polisher::polish] generating consensus [=======> ] 0.150733 s [racon::Polisher::polish] generating consensus [========> ] 0.165423 s [racon::Polisher::polish] generating consensus [=========> ] 0.182873 s [racon::Polisher::polish] generating consensus [==========> ] 0.211408 s [racon::Polisher::polish] generating consensus [===========> ] 0.245149 s [racon::Polisher::polish] generating consensus [============> ] 0.291329 s [racon::Polisher::polish] generating consensus [=============> ] 0.350316 s [racon::Polisher::polish] generating consensus [==============> ] 0.394929 s [racon::Polisher::polish] generating consensus [===============> ] 0.440945 s [racon::Polisher::polish] generating consensus [================> ] 0.486898 s [racon::Polisher::polish] generating consensus [=================> ] 0.529582 s [racon::Polisher::polish] generating consensus [==================> ] 0.554793 s [racon::Polisher::polish] generating consensus [===================>] 0.613772 s [racon::Polisher::polish] generating consensus [====================] 0.749097 s [racon::Polisher::] total = 1.064519 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (1076 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.001157 s [racon::Polisher::initialize] loaded sequences 0.065498 s [racon::Polisher::initialize] loaded overlaps 0.023269 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.009495 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.009511 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.009517 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.009522 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.009526 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.009531 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.009536 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.009540 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.009544 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.009549 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.009553 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.009558 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.009563 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.009568 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.009573 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.009577 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.009582 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.009587 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009592 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009597 s [racon::Polisher::initialize] transformed data into windows 0.001577 s [racon::Polisher::polish] generating consensus [=> ] 0.064332 s [racon::Polisher::polish] generating consensus [==> ] 0.098280 s [racon::Polisher::polish] generating consensus [===> ] 0.127057 s [racon::Polisher::polish] generating consensus [====> ] 0.144185 s [racon::Polisher::polish] generating consensus [=====> ] 0.151835 s [racon::Polisher::polish] generating consensus [======> ] 0.161933 s [racon::Polisher::polish] generating consensus [=======> ] 0.174408 s [racon::Polisher::polish] generating consensus [========> ] 0.186173 s [racon::Polisher::polish] generating consensus [=========> ] 0.195966 s [racon::Polisher::polish] generating consensus [==========> ] 0.221949 s [racon::Polisher::polish] generating consensus [===========> ] 0.248287 s [racon::Polisher::polish] generating consensus [============> ] 0.283608 s [racon::Polisher::polish] generating consensus [=============> ] 0.330027 s [racon::Polisher::polish] generating consensus [==============> ] 0.380208 s [racon::Polisher::polish] generating consensus [===============> ] 0.446033 s [racon::Polisher::polish] generating consensus [================> ] 0.446123 s [racon::Polisher::polish] generating consensus [=================> ] 0.480607 s [racon::Polisher::polish] generating consensus [==================> ] 0.500143 s [racon::Polisher::polish] generating consensus [===================>] 0.517173 s [racon::Polisher::polish] generating consensus [====================] 0.604004 s [racon::Polisher::] total = 0.731087 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (743 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.001023 s [racon::Polisher::initialize] loaded sequences 0.032590 s [racon::Polisher::initialize] loaded overlaps 0.032628 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.004312 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.004330 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.004596 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.004893 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.004971 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.005151 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.005528 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005838 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005993 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.006197 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.006467 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.006936 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.007110 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.007428 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.007753 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008174 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008322 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008332 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.008538 s [racon::Polisher::initialize] aligning overlaps [====================] 0.008548 s [racon::Polisher::initialize] transformed data into windows 0.000570 s [racon::Polisher::polish] generating consensus [=> ] 0.061678 s [racon::Polisher::polish] generating consensus [==> ] 0.105516 s [racon::Polisher::polish] generating consensus [===> ] 0.137697 s [racon::Polisher::polish] generating consensus [====> ] 0.159813 s [racon::Polisher::polish] generating consensus [=====> ] 0.172720 s [racon::Polisher::polish] generating consensus [======> ] 0.182641 s [racon::Polisher::polish] generating consensus [=======> ] 0.197144 s [racon::Polisher::polish] generating consensus [========> ] 0.211893 s [racon::Polisher::polish] generating consensus [=========> ] 0.229469 s [racon::Polisher::polish] generating consensus [==========> ] 0.254019 s [racon::Polisher::polish] generating consensus [===========> ] 0.286345 s [racon::Polisher::polish] generating consensus [============> ] 0.327354 s [racon::Polisher::polish] generating consensus [=============> ] 0.381083 s [racon::Polisher::polish] generating consensus [==============> ] 0.440792 s [racon::Polisher::polish] generating consensus [===============> ] 0.490796 s [racon::Polisher::polish] generating consensus [================> ] 0.534461 s [racon::Polisher::polish] generating consensus [=================> ] 0.579287 s [racon::Polisher::polish] generating consensus [==================> ] 0.601461 s [racon::Polisher::polish] generating consensus [===================>] 0.626843 s [racon::Polisher::polish] generating consensus [====================] 0.760691 s [racon::Polisher::] total = 0.853427 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (855 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.001004 s [racon::Polisher::initialize] loaded sequences 0.060183 s [racon::Polisher::initialize] loaded overlaps 0.000502 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.042076 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.062362 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.077306 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.093872 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.103488 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.107131 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.119614 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.141700 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.145945 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.153629 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.160338 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.175388 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.182238 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.189662 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.201125 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.215354 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.218625 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.227080 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.239637 s [racon::Polisher::initialize] aligning overlaps [====================] 0.243509 s [racon::Polisher::initialize] transformed data into windows 0.003666 s [racon::Polisher::polish] generating consensus [=> ] 0.096035 s [racon::Polisher::polish] generating consensus [==> ] 0.096256 s [racon::Polisher::polish] generating consensus [===> ] 0.180701 s [racon::Polisher::polish] generating consensus [====> ] 0.180919 s [racon::Polisher::polish] generating consensus [=====> ] 0.223227 s [racon::Polisher::polish] generating consensus [======> ] 0.223254 s [racon::Polisher::polish] generating consensus [=======> ] 0.258213 s [racon::Polisher::polish] generating consensus [========> ] 0.258256 s [racon::Polisher::polish] generating consensus [=========> ] 0.317862 s [racon::Polisher::polish] generating consensus [==========> ] 0.317886 s [racon::Polisher::polish] generating consensus [===========> ] 0.428833 s [racon::Polisher::polish] generating consensus [============> ] 0.438396 s [racon::Polisher::polish] generating consensus [=============> ] 0.621517 s [racon::Polisher::polish] generating consensus [==============> ] 0.621542 s [racon::Polisher::polish] generating consensus [===============> ] 0.742176 s [racon::Polisher::polish] generating consensus [================> ] 0.742239 s [racon::Polisher::polish] generating consensus [=================> ] 0.848358 s [racon::Polisher::polish] generating consensus [==================> ] 0.848385 s [racon::Polisher::polish] generating consensus [===================>] 0.937232 s [racon::Polisher::polish] generating consensus [====================] 1.104602 s [racon::Polisher::] total = 1.439851 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1458 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000973 s [racon::Polisher::initialize] loaded sequences 0.063668 s [racon::Polisher::initialize] loaded overlaps 0.000525 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.043332 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.063547 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.078430 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.095182 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.105334 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.108634 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.131114 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.141225 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.149314 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.156394 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.166293 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.174817 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.184138 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.188807 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.200283 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.219791 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.224555 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.232171 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.242515 s [racon::Polisher::initialize] aligning overlaps [====================] 0.249467 s [racon::Polisher::initialize] transformed data into windows 0.003909 s [racon::Polisher::polish] generating consensus [=> ] 0.024338 s [racon::Polisher::polish] generating consensus [==> ] 0.046741 s [racon::Polisher::polish] generating consensus [===> ] 0.065257 s [racon::Polisher::polish] generating consensus [====> ] 0.080027 s [racon::Polisher::polish] generating consensus [=====> ] 0.090124 s [racon::Polisher::polish] generating consensus [======> ] 0.100504 s [racon::Polisher::polish] generating consensus [=======> ] 0.110194 s [racon::Polisher::polish] generating consensus [========> ] 0.121479 s [racon::Polisher::polish] generating consensus [=========> ] 0.136475 s [racon::Polisher::polish] generating consensus [==========> ] 0.152959 s [racon::Polisher::polish] generating consensus [===========> ] 0.180629 s [racon::Polisher::polish] generating consensus [============> ] 0.216632 s [racon::Polisher::polish] generating consensus [=============> ] 0.262919 s [racon::Polisher::polish] generating consensus [==============> ] 0.309310 s [racon::Polisher::polish] generating consensus [===============> ] 0.342439 s [racon::Polisher::polish] generating consensus [================> ] 0.365559 s [racon::Polisher::polish] generating consensus [=================> ] 0.395927 s [racon::Polisher::polish] generating consensus [==================> ] 0.413191 s [racon::Polisher::polish] generating consensus [===================>] 0.436537 s [racon::Polisher::polish] generating consensus [====================] 0.535847 s [racon::Polisher::] total = 0.878391 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (880 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.064822 s [racon::Polisher::initialize] loaded sequences 0.037917 s [racon::Polisher::initialize] loaded overlaps 0.008065 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.047514 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.076618 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.085101 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.098323 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.108014 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.119919 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.134637 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.143203 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.155939 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.166074 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.177065 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.194093 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.205905 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.219686 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.228697 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.243364 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.252334 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.257315 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.268141 s [racon::Polisher::initialize] aligning overlaps [====================] 0.280192 s [racon::Polisher::initialize] transformed data into windows 0.006936 s [racon::Polisher::polish] generating consensus [=> ] 0.020986 s [racon::Polisher::polish] generating consensus [==> ] 0.044352 s [racon::Polisher::polish] generating consensus [===> ] 0.066075 s [racon::Polisher::polish] generating consensus [====> ] 0.066476 s [racon::Polisher::polish] generating consensus [=====> ] 0.079723 s [racon::Polisher::polish] generating consensus [======> ] 0.088239 s [racon::Polisher::polish] generating consensus [=======> ] 0.102768 s [racon::Polisher::polish] generating consensus [========> ] 0.106207 s [racon::Polisher::polish] generating consensus [=========> ] 0.133210 s [racon::Polisher::polish] generating consensus [==========> ] 0.145379 s [racon::Polisher::polish] generating consensus [===========> ] 0.155922 s [racon::Polisher::polish] generating consensus [============> ] 0.159845 s [racon::Polisher::polish] generating consensus [=============> ] 0.172527 s [racon::Polisher::polish] generating consensus [==============> ] 0.172874 s [racon::Polisher::polish] generating consensus [===============> ] 0.201034 s [racon::Polisher::polish] generating consensus [================> ] 0.201296 s [racon::Polisher::polish] generating consensus [=================> ] 0.252388 s [racon::Polisher::polish] generating consensus [==================> ] 0.270969 s [racon::Polisher::polish] generating consensus [===================>] 0.286989 s [racon::Polisher::polish] generating consensus [====================] 0.290225 s [racon::Polisher::] total = 0.689146 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (690 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.069602 s [racon::Polisher::initialize] loaded sequences 0.040442 s [racon::Polisher::initialize] loaded overlaps 0.008340 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.308107 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.465636 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.611903 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.823890 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.010408 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.139758 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.314865 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.539494 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.745869 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.953646 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.113289 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.340358 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.570060 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.759276 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.022921 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.262937 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.472995 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.705584 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.963279 s [racon::Polisher::initialize] aligning overlaps [====================] 4.166226 s [racon::Polisher::initialize] transformed data into windows 0.093336 s [racon::Polisher::polish] generating consensus [=> ] 0.962880 s [racon::Polisher::polish] generating consensus [==> ] 1.657167 s [racon::Polisher::polish] generating consensus [===> ] 2.387063 s [racon::Polisher::polish] generating consensus [====> ] 2.982957 s [racon::Polisher::polish] generating consensus [=====> ] 3.673528 s [racon::Polisher::polish] generating consensus [======> ] 4.431131 s [racon::Polisher::polish] generating consensus [=======> ] 5.227196 s [racon::Polisher::polish] generating consensus [========> ] 5.802537 s [racon::Polisher::polish] generating consensus [=========> ] 6.550524 s [racon::Polisher::polish] generating consensus [==========> ] 7.427715 s [racon::Polisher::polish] generating consensus [===========> ] 8.142007 s [racon::Polisher::polish] generating consensus [============> ] 8.927589 s [racon::Polisher::polish] generating consensus [=============> ] 9.606647 s [racon::Polisher::polish] generating consensus [==============> ] 10.337120 s [racon::Polisher::polish] generating consensus [===============> ] 11.128889 s [racon::Polisher::polish] generating consensus [================> ] 11.562125 s [racon::Polisher::polish] generating consensus [=================> ] 12.436226 s [racon::Polisher::polish] generating consensus [==================> ] 13.255019 s [racon::Polisher::polish] generating consensus [===================>] 14.043701 s [racon::Polisher::polish] generating consensus [====================] 14.645684 s [racon::Polisher::] total = 19.028906 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (19030 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.038256 s [racon::Polisher::initialize] loaded sequences 0.029225 s [racon::Polisher::initialize] loaded overlaps 0.012241 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.302952 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.461069 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.614148 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.827141 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.012543 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.142462 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.318137 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.543653 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.750867 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.959730 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.120454 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.348048 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.578408 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.767645 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.032763 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.273315 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.483774 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.710864 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.962035 s [racon::Polisher::initialize] aligning overlaps [====================] 4.164967 s [racon::Polisher::initialize] transformed data into windows 0.021692 s [racon::Polisher::polish] generating consensus [=> ] 1.277417 s [racon::Polisher::polish] generating consensus [==> ] 2.271199 s [racon::Polisher::polish] generating consensus [===> ] 3.250847 s [racon::Polisher::polish] generating consensus [====> ] 3.994355 s [racon::Polisher::polish] generating consensus [=====> ] 4.887705 s [racon::Polisher::polish] generating consensus [======> ] 5.875778 s [racon::Polisher::polish] generating consensus [=======> ] 6.941659 s [racon::Polisher::polish] generating consensus [========> ] 7.718216 s [racon::Polisher::polish] generating consensus [=========> ] 8.708279 s [racon::Polisher::polish] generating consensus [==========> ] 9.870745 s [racon::Polisher::polish] generating consensus [===========> ] 10.823775 s [racon::Polisher::polish] generating consensus [============> ] 11.891642 s [racon::Polisher::polish] generating consensus [=============> ] 12.880400 s [racon::Polisher::polish] generating consensus [==============> ] 13.873781 s [racon::Polisher::polish] generating consensus [===============> ] 14.885421 s [racon::Polisher::polish] generating consensus [================> ] 15.443606 s [racon::Polisher::polish] generating consensus [=================> ] 16.723021 s [racon::Polisher::polish] generating consensus [==================> ] 17.903180 s [racon::Polisher::polish] generating consensus [===================>] 18.951155 s [racon::Polisher::polish] generating consensus [====================] 19.845072 s [racon::Polisher::] total = 24.115363 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (24117 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.070052 s [racon::Polisher::initialize] loaded sequences 0.040983 s [racon::Polisher::initialize] loaded overlaps 0.007567 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.294588 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.452195 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.608162 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.819867 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.003880 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.132903 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.307551 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.531931 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.738196 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.945781 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.105005 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.331554 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.560759 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.749079 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.012999 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.253170 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.462982 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.688790 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.924861 s [racon::Polisher::initialize] aligning overlaps [====================] 4.144211 s [racon::Polisher::initialize] transformed data into windows 0.091476 s [racon::Polisher::polish] generating consensus [=> ] 0.921489 s [racon::Polisher::polish] generating consensus [==> ] 1.597241 s [racon::Polisher::polish] generating consensus [===> ] 2.323945 s [racon::Polisher::polish] generating consensus [====> ] 2.924655 s [racon::Polisher::polish] generating consensus [=====> ] 3.575082 s [racon::Polisher::polish] generating consensus [======> ] 4.339454 s [racon::Polisher::polish] generating consensus [=======> ] 5.111833 s [racon::Polisher::polish] generating consensus [========> ] 5.673622 s [racon::Polisher::polish] generating consensus [=========> ] 6.399838 s [racon::Polisher::polish] generating consensus [==========> ] 7.253569 s [racon::Polisher::polish] generating consensus [===========> ] 7.961903 s [racon::Polisher::polish] generating consensus [============> ] 8.738712 s [racon::Polisher::polish] generating consensus [=============> ] 9.410820 s [racon::Polisher::polish] generating consensus [==============> ] 10.132413 s [racon::Polisher::polish] generating consensus [===============> ] 10.919651 s [racon::Polisher::polish] generating consensus [================> ] 11.349564 s [racon::Polisher::polish] generating consensus [=================> ] 12.218521 s [racon::Polisher::polish] generating consensus [==================> ] 13.054015 s [racon::Polisher::polish] generating consensus [===================>] 13.853410 s [racon::Polisher::polish] generating consensus [====================] 14.456045 s [racon::Polisher::] total = 18.813757 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18815 ms) [----------] 10 tests from RaconPolishingTest (68600 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (68615 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1041753 and its subdirectories I: Current time: Sat Jul 12 20:52:03 -12 2025 I: pbuilder-time-stamp: 1752396723