I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 30 16:55:08 -12 2024 I: pbuilder-time-stamp: 1730350508 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-cran-openmx_2.21.12+dfsg-1.dsc] I: copying [./r-cran-openmx_2.21.12+dfsg.orig.tar.xz] I: copying [./r-cran-openmx_2.21.12+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 3 01:17:09 2024 gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 gpgv: issuer "plessy@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-openmx_2.21.12+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-openmx in r-cran-openmx-2.21.12+dfsg dpkg-source: info: unpacking r-cran-openmx_2.21.12+dfsg.orig.tar.xz dpkg-source: info: unpacking r-cran-openmx_2.21.12+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying use_debian_packaged_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3423700/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='a8ec51245a324ade9efe307c86c9cd09' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3423700' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nbu5smRG/pbuilderrc_rrSH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nbu5smRG/b1 --logfile b1/build.log r-cran-openmx_2.21.12+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3423700/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-digest, r-cran-mass, r-cran-matrix, r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen (>= 0.3.3.9.4), r-cran-stanheaders, r-cran-bh, r-cran-rpf, libboost-system-dev, libsqlite3-dev, libzstd-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20067 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-digest; however: Package r-cran-digest is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mass; however: Package r-cran-mass is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcppparallel; however: Package r-cran-rcppparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-lifecycle; however: Package r-cran-lifecycle is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcppeigen (>= 0.3.3.9.4); however: Package r-cran-rcppeigen is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stanheaders; however: Package r-cran-stanheaders is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bh; however: Package r-cran-bh is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rpf; however: Package r-cran-rpf is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libhwloc15{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsqlite3-dev{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-bh{a} r-cran-cli{a} r-cran-digest{a} r-cran-glue{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mvtnorm{a} r-cran-pkgkitten{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-rcppparallel{a} r-cran-rlang{a} r-cran-rpf{a} r-cran-stanheaders{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libhwloc-plugins libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-callr r-cran-covr r-cran-crayon r-cran-dbi r-cran-dplyr r-cran-fs r-cran-ggplot2 r-cran-gridextra r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lintr r-cran-magrittr r-cran-markdown r-cran-mockery r-cran-numderiv r-cran-pillar r-cran-processx r-cran-ps r-cran-reshape2 r-cran-rmarkdown r-cran-roxygen2 r-cran-rprojroot r-cran-rsqlite r-cran-rstan r-cran-rstudioapi r-cran-runit r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-usethis r-cran-vctrs r-cran-waldo r-cran-whoami r-cran-withr r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 215 newly installed, 0 to remove and 0 not upgraded. Need to get 126 MB of archives. After unpacking 539 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-1 [1348 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14 [225 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b1 [12.9 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29+b1 [9068 B] Get: 40 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-2 [90.1 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b5 [296 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2 [115 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-6 [361 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3 [37.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2 [48.0 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.0.10-1+b1 [53.7 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.3-1+b1 [32.7 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [172 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.1-3 [28.0 MB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-6 [418 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-6 [9787 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-6 [11.9 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 111 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 112 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-3 [98.2 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-3 [3584 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2 [95.7 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2 [337 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b1 [217 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b1 [207 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b1 [55.8 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b1 [669 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1 [312 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b2 [22.0 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [192 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.1-3 [4512 B] Get: 137 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.10.1-2 [328 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 187 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 188 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-3.2 [231 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 191 http://deb.debian.org/debian trixie/main arm64 libhwloc15 arm64 2.11.2-1 [141 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 libsqlite3-dev arm64 3.46.1-1 [1058 kB] Get: 193 http://deb.debian.org/debian trixie/main arm64 libtbbmalloc2 arm64 2021.12.0-1 [35.2 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 libtbbbind-2-5 arm64 2021.12.0-1 [14.1 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 libtbb12 arm64 2021.12.0-1 [63.5 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 libtbb-dev arm64 2021.12.0-1 [193 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 r-cran-littler arm64 0.3.20-1 [102 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 littler all 0.3.20-1 [16.0 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 r-cran-bh all 1.84.0-1 [5912 B] Get: 201 http://deb.debian.org/debian trixie/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 r-cran-digest arm64 0.6.37-1 [204 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 r-cran-glue arm64 1.7.0-1 [156 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1 [1391 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 r-cran-rlang arm64 1.1.4-1 [1706 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 r-cran-mass arm64 7.3-61-1 [1111 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 r-cran-matrix arm64 1.7-1-1 [4023 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 r-cran-mvtnorm arm64 1.3-1-1 [884 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 r-cran-rcpp arm64 1.0.13-1 [2063 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1396 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 r-cran-rcppparallel arm64 5.1.7+dfsg-5+b1 [307 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 r-cran-rpf arm64 1.0.14+dfsg-1+b1 [680 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 r-cran-stanheaders arm64 2.32.10-1 [1313 kB] Fetched 126 MB in 1s (137 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20067 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-1_arm64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../091-libjbig0_2.1-6.1+b1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../098-libxft2_2.3.6-1+b1_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b1_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../101-libtk8.6_8.6.15-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.15-1) ... Selecting previously unselected package libice6:arm64. 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Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:arm64 (1.17.0-2) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libpcre2-16-0:arm64 (10.42-4+b1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 31 04:56:02 UTC 2024. Universal Time is now: Thu Oct 31 04:56:02 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.42-4+b1) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libswitch-perl (2.17-3) ... Setting up libsqlite3-dev:arm64 (3.46.1-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libncurses6:arm64 (6.5-2) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libhwloc15:arm64 (2.11.2-1) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... 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Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libtbb-dev:arm64 (2021.12.0-1) ... Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.1-3) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-6-1) ... 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Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-rpf (1.0.14+dfsg-1+b1) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-cran-openmx-2.21.12+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-cran-openmx_2.21.12+dfsg-1_source.changes dpkg-buildpackage: info: source package r-cran-openmx dpkg-buildpackage: info: source version 2.21.12+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Charles Plessy dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-openmx/ -O--buildsystem=R I: R packages needed for DEP8: mvtnorm, numderiv, roxygen2 (>= 6.1), snowfall, lme4, covr, testthat, knitr, markdown, rmarkdown, reshape2, ggplot2 I: R Package: OpenMx Version: 2.21.12 I: Building using R version 4.4.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 03 Oct 2024 10:05:00 +0900 mkdir -p /build/reproducible-path/r-cran-openmx-2.21.12\+dfsg/debian/r-cran-openmx/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-cran-openmx-2.21.12\+dfsg/debian/r-cran-openmx/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 03 Oct 2024 10:05:00 +0900'" * installing *source* package 'OpenMx' ... files 'inst/doc/factor_analysis.html', 'inst/doc/regularization.html' are missing files 'inst/tools/mxAlgebraParser.py', 'inst/tools/mxParser.py', 'inst/tools/sphinxToR.py', 'src/Makevars.in' have the wrong MD5 checksums ** using staged installation NOTE: ./configure is not an autoconf generated script. Change default C/C++ compiler and default compile flags by editing ~/.R/Makevars ** libs using C compiler: 'gcc (Debian 14.2.0-6) 14.2.0' using Fortran compiler: 'GNU Fortran (Debian 14.2.0-6) 14.2.0' using C++ compiler: 'g++ (Debian 14.2.0-6) 14.2.0' using C++17 make[1]: Entering directory '/build/reproducible-path/r-cran-openmx-2.21.12+dfsg/src' g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c Compute.cpp -o Compute.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeGD.cpp -o ComputeGD.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeNM.cpp -o ComputeNM.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeNR.cpp -o ComputeNR.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeSD.cpp -o ComputeSD.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c FellnerFitFunction.cpp -o FellnerFitFunction.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c MarkovExpectation.cpp -o MarkovExpectation.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c MarkovFF.cpp -o MarkovFF.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c asa.c -o asa.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c asubnp.cpp -o asubnp.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c ba81quad.cpp -o ba81quad.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c dmvnorm.cpp -o dmvnorm.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c fitMultigroup.cpp -o fitMultigroup.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c general.c -o general.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c glue.cpp -o glue.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c matlogexp.cpp -o matlogexp.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.cpp -o matrix.o gfortran -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -c mvbvn.f -o mvbvn.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c nanotimer.cpp -o nanotimer.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxAlgebra.cpp -o omxAlgebra.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxAlgebraFitFunction.cpp -o omxAlgebraFitFunction.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxData.cpp -o omxData.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExpectation.cpp -o omxExpectation.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExpectationBA81.cpp -o omxExpectationBA81.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExportBackendState.cpp -o omxExportBackendState.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFIMLFitFunction.cpp -o omxFIMLFitFunction.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFitFunction.cpp -o omxFitFunction.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFitFunctionBA81.cpp -o omxFitFunctionBA81.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxGREMLExpectation.cpp -o omxGREMLExpectation.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxGREMLfitfunction.cpp -o omxGREMLfitfunction.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxHessianCalculation.cpp -o omxHessianCalculation.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxImportFrontendState.cpp -o omxImportFrontendState.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxLISRELExpectation.cpp -o omxLISRELExpectation.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxMLFitFunction.cpp -o omxMLFitFunction.o In file included from /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:11, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:7, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:18, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:14, from /usr/lib/R/site-library/StanHeaders/include/stan/math/fwd/fun/grad_inc_beta.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/fwd/fun.hpp:43, from /usr/lib/R/site-library/StanHeaders/include/stan/math/mix.hpp:10, from omxMLFitFunction.cpp:21: /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> boost::math::detail::hypergeometric_pFq_checked_series_impl(const Seq&, const Seq&, const Real&, const Policy&, const Terminal&, long long int&) [with Seq = std::vector; Real = long double; Policy = boost::math::policies::policy; Terminal = iteration_terminator]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:107: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy; typename tools::promote_args::type = double; typename Seq::value_type = double]' 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:72:35: required from 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*) [with Seq = std::vector; Real = double; typename tools::promote_args::type = double; typename Seq::value_type = double]' 72 | return hypergeometric_pFq(aj, bj, z, p_abs_error, boost::math::policies::policy<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:55:41: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 55 | return boost::math::hypergeometric_pFq( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | std::vector(a_ref.data(), a_ref.data() + a_ref.size()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | std::vector(b_ref.data(), b_ref.data() + b_ref.size()), z); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp:122:28: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 122 | std::pair hypergeometric_pFq_checked_series_impl(const Seq& aj, const Seq& bj, const Real& z, const Policy& pol, const Terminal& termination, long long& log_scale) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/fwd/fun/bessel_first_kind.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/fwd/fun.hpp:17: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 217 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double; typename detail::fraction_traits::result_type = double]' 252 | return continued_fraction_a(g, factor, max_iter); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]' 314 | return 1 / (z - a + 1 + boost::math::tools::continued_fraction_a(f, eps)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1176 | result += log(upper_gamma_fraction(a, x, policies::get_epsilon())); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 2130 | detail::gamma_incomplete_imp(static_cast(a), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2131 | static_cast(z), true, false, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2132 | forwarding_policy(), static_cast(nullptr)), "gamma_p<%1%>(%1%, %1%)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here 76 | return boost::math::gamma_p(z, a, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/fwd/fun/owens_t.hpp:8, from /usr/lib/R/site-library/StanHeaders/include/stan/math/fwd/fun.hpp:96: /usr/include/boost/math/special_functions/owens_t.hpp: In instantiation of 'std::pair<_FIter, _FIter> boost::math::detail::owens_t_T1_accelerated(T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy]': /usr/include/boost/math/special_functions/owens_t.hpp:874:46: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&, const std::integral_constant&) [with RealType = long double; Policy = boost::math::policies::policy]' 874 | p1 = owens_t_T1_accelerated(h, a, forwarding_policy()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:979:36: required from 'RealType boost::math::detail::owens_t_dispatch(RealType, RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 979 | return owens_t_dispatch(h, a, ah, pol, tag_type()); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1000:38: required from 'RealType boost::math::detail::owens_t(RealType, RealType, const Policy&) [with RealType = long double; Policy = boost::math::policies::policy]' 1000 | val = owens_t_dispatch(h, fabs_a, fabs_ah, pol); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1072:86: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2, const Policy&) [with T1 = double; T2 = double; Policy = policies::policy; tools::promote_args_t = double]' 1072 | return policies::checked_narrowing_cast(detail::owens_t(static_cast(h), static_cast(a), pol), "boost::math::owens_t<%1%>(%1%,%1%)"); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:1078:24: required from 'boost::math::tools::promote_args_t boost::math::owens_t(T1, T2) [with T1 = double; T2 = double; tools::promote_args_t = double]' 1078 | return owens_t(h, a, policies::policy<>()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/owens_t.hpp:58:72: required from here 58 | inline double owens_t(double h, double a) { return boost::math::owens_t(h, a); } | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/math/special_functions/owens_t.hpp:543:26: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 543 | std::pair owens_t_T1_accelerated(T h, T a, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:8, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:10, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_reg_inc_beta.hpp:6, from /usr/lib/R/site-library/StanHeaders/include/stan/math/fwd/fun/inc_beta.hpp:5, from /usr/lib/R/site-library/StanHeaders/include/stan/math/fwd/fun/grad_inc_beta.hpp:10: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = double; result_type = std::pair]': /usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double; uintmax_t = long unsigned int]' 123 | value_type v = g(); | ~^~ /usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = double; typename detail::fraction_traits::result_type = double]' 156 | return continued_fraction_b(g, factor, max_terms); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 732 | T fract = boost::math::tools::continued_fraction_b(f, boost::math::policies::get_epsilon()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1377 | fract = ibeta_fraction2(a, b, x, y, pol, normalised, p_derivative); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]' 1414 | return ibeta_imp(a, b, x, pol, inv, normalised, static_cast(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]' 1570 | return policies::checked_narrowing_cast(detail::ibeta_imp(static_cast(a), static_cast(b), static_cast(x), forwarding_policy(), false, true), "boost::math::ibeta<%1%>(%1%,%1%,%1%)"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:29:28: required from here 29 | return boost::math::ibeta(a, b, x, boost_policy_t<>()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 695 | result_type operator()() | ^~~~~~~~ /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp: In function 'typename boost::math::tools::promote_args::type boost::math::hypergeometric_pFq(const Seq&, const Seq&, const Real&, Real*, const Policy&) [with Seq = std::vector; Real = double; Policy = policies::policy]': /usr/include/boost/math/special_functions/hypergeometric_pFq.hpp:61:44: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 61 | std::pair r = boost::math::detail::hypergeometric_pFq_checked_series_impl(aj, bj, value_type(z), pol, boost::math::detail::iteration_terminator(boost::math::policies::get_max_series_iterations()), scale); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:18: /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 217 | value_type v = g(); | ^ /usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]': /usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxMatrix.cpp -o omxMatrix.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNLopt.cpp -o omxNLopt.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNPSOLSpecific.cpp -o omxNPSOLSpecific.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNormalExpectation.cpp -o omxNormalExpectation.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRAMExpectation.cpp -o omxRAMExpectation.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRFitFunction.cpp -o omxRFitFunction.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRowFitFunction.cpp -o omxRowFitFunction.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxState.cpp -o omxState.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxStateSpaceExpectation.cpp -o omxStateSpaceExpectation.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxSymbolTable.cpp -o omxSymbolTable.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c omxWLSFitFunction.cpp -o omxWLSFitFunction.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c penalty.cpp -o penalty.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c povRAM.cpp -o povRAM.o gfortran -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -c sadmvn.f -o sadmvn.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c slsqp.c -o slsqp.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c ssMLFit.cpp -o ssMLFit.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c stop.c -o stop.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o OpenMx.so Compute.o ComputeGD.o ComputeNM.o ComputeNR.o ComputeSD.o FellnerFitFunction.o MarkovExpectation.o MarkovFF.o asa.o asubnp.o ba81quad.o dmvnorm.o fitMultigroup.o general.o glue.o matlogexp.o matrix.o mvbvn.o nanotimer.o omxAlgebra.o omxAlgebraFitFunction.o omxData.o omxExpectation.o omxExpectationBA81.o omxExportBackendState.o omxFIMLFitFunction.o omxFitFunction.o omxFitFunctionBA81.o omxGREMLExpectation.o omxGREMLfitfunction.o omxHessianCalculation.o omxImportFrontendState.o omxLISRELExpectation.o omxMLFitFunction.o omxMatrix.o omxNLopt.o omxNPSOLSpecific.o omxNormalExpectation.o omxRAMExpectation.o omxRFitFunction.o omxRowFitFunction.o omxState.o omxStateSpaceExpectation.o omxSymbolTable.o omxWLSFitFunction.o optimize.o options.o penalty.o povRAM.o sadmvn.o slsqp.o ssMLFit.o stop.o -fopenmp -llapack -lblas -lboost_system -lsqlite3 -lgfortran -lm -L/usr/lib/aarch64-linux-gnu -Wl,-rpath,/usr/lib/aarch64-linux-gnu -ltbb -ltbbmalloc -lgfortran -lm -L/usr/lib/R/lib -lR mkdir -p ../inst/debug cp *.gcno ../inst/debug/ cp: cannot stat '*.gcno': No such file or directory make[1]: [Makevars:94: save-gcno] Error 1 (ignored) make[1]: Leaving directory '/build/reproducible-path/r-cran-openmx-2.21.12+dfsg/src' make[1]: Entering directory '/build/reproducible-path/r-cran-openmx-2.21.12+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/r-cran-openmx-2.21.12+dfsg/src' installing to /build/reproducible-path/r-cran-openmx-2.21.12+dfsg/debian/r-cran-openmx/usr/lib/R/site-library/00LOCK-r-cran-openmx-2.21.12+dfsg/00new/OpenMx/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'nrow' from package 'base' in package 'OpenMx' Creating a generic function for 'ncol' from package 'base' in package 'OpenMx' ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OpenMx) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-mvtnorm for Recommends:mvtnorm I: Using r-cran-numderiv for Recommends:numderiv I: Using r-cran-roxygen2 for Recommends:roxygen2 (>= 6.1) I: Using r-cran-snowfall for Recommends:snowfall I: Using r-cran-lme4 by changing version to for Recommends:lme4 I: Using r-cran-covr for Recommends:covr I: Using r-cran-testthat for Recommends:testthat I: Using r-cran-knitr for Recommends:knitr I: Using r-cran-markdown for Recommends:markdown I: Using r-cran-rmarkdown for Recommends:rmarkdown I: Using r-cran-reshape2 for Recommends:reshape2 I: Using r-cran-ggplot2 for Recommends:ggplot2 I: Using r-cran-roxygen2 for Suggests:roxygen2 (>= 6.1) I: Using r-cran-rpf for Suggests:rpf (>= 0.45) W: Cannot find a debian package for Suggests:umx W: Cannot find a debian package for Suggests:ifaTools I: Using r-cran-digest for Imports:digest I: Using r-cran-mass for Imports:MASS I: Version replacement between package version 1.2-16 and Debian version 1.7-1-1 suspicious. Do not replace anything. I: Using r-cran-matrix by changing version to (>= 1.2-16) for Imports:Matrix (>= 1.2-16) I: Using r-cran-rcpp for Imports:Rcpp I: Using r-cran-rcppparallel for Imports:RcppParallel I: Using r-cran-lifecycle for Imports:lifecycle I: Using r-cran-rcpp for LinkingTo:Rcpp I: Using r-cran-rcppeigen for LinkingTo:RcppEigen (>= 0.3.3.9.4) I: Using r-cran-rcppparallel for LinkingTo:RcppParallel I: Using r-cran-stanheaders for LinkingTo:StanHeaders (>= 2.10.0.2) I: Using r-cran-bh for LinkingTo:BH (>= 1.69.0-1) I: Using r-cran-rpf for LinkingTo:rpf (>= 0.45) I: Using r-cran-matrix by changing version to for LinkingTo:Matrix I: Use r-cran-openmx as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-cran-openmx-2.21.12+dfsg' dh_fixperms find debian \( -name "*.R" -o -name "*.txt" \) -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/r-cran-openmx-2.21.12+dfsg' dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=R debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/r-cran-openmx-2.21.12+dfsg' rmbversion=`dpkg -l r-cran-matrix | grep 'ii' | sed 's/^.*r-cran-matrix[[:space:]]\+\([0-9.-]\+\)[[:space:]]\+.*/\1/'`; \ sed -i "s/r-cran-matrix ([^)]\+)/r-cran-matrix (>= ${rmbversion})/" debian/*substvars rversion=`dpkg -l r-base-core | grep 'ii' | sed 's/^.*r-base-core[[:space:]]\+\([0-9.-]\+\)-[0-9+b]\+[[:space:]]\+.*/\1/'`; \ sed -i "s/\(r-api-[0-9.]\+\),/& r-base-core (>= ${rversion})/" debian/*substvars dh_gencontrol make[1]: Leaving directory '/build/reproducible-path/r-cran-openmx-2.21.12+dfsg' dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-openmx-dbgsym' in '../r-cran-openmx-dbgsym_2.21.12+dfsg-1_arm64.deb'. dpkg-deb: building package 'r-cran-openmx' in '../r-cran-openmx_2.21.12+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-openmx_2.21.12+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-cran-openmx_2.21.12+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3423700 and its subdirectories I: Current time: Wed Oct 30 17:37:06 -12 2024 I: pbuilder-time-stamp: 1730353026