I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 1 00:56:21 +14 2024 I: pbuilder-time-stamp: 1732964181 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bioregistry_0.11.12-3.dsc] I: copying [./python-bioregistry_0.11.12.orig.tar.gz] I: copying [./python-bioregistry_0.11.12-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Sep 11 10:54:24 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-bioregistry_0.11.12-3.dsc: no acceptable signature found dpkg-source: info: extracting python-bioregistry in python-bioregistry-0.11.12 dpkg-source: info: unpacking python-bioregistry_0.11.12.orig.tar.gz dpkg-source: info: unpacking python-bioregistry_0.11.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying vendor_more_click.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/325866/tmp/hooks/D01_modify_environment starting debug: Running on codethink02-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 30 10:56 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/325866/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/325866/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=43098fd008004fee9a81bdd3b4fa33e6 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=325866 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XA4k5O21/pbuilderrc_GsQL --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XA4k5O21/b2 --logfile b2/build.log python-bioregistry_0.11.12-3.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/325866/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4, python3-click, python3-curies, python3-defusedxml, python3-fastapi, python3-flask-bootstrap, python3-httpx, python3-markdown, python3-more-itertools, python3-pandas, python3-pydantic, python3-pystow, python3-pytest, python3-rdflib, python3-rdflib-endpoint, python3-setuptools, python3-tabulate, python3-tqdm, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20080 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4; however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-curies; however: Package python3-curies is not installed. pbuilder-satisfydepends-dummy depends on python3-defusedxml; however: Package python3-defusedxml is not installed. pbuilder-satisfydepends-dummy depends on python3-fastapi; however: Package python3-fastapi is not installed. pbuilder-satisfydepends-dummy depends on python3-flask-bootstrap; however: Package python3-flask-bootstrap is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3-more-itertools; however: Package python3-more-itertools is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-pystow; however: Package python3-pystow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib-endpoint; however: Package python3-rdflib-endpoint is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-annotated-types{a} python3-anyio{a} python3-autocommand{a} python3-blinker{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-curies{a} python3-dateutil{a} python3-defusedxml{a} python3-dnspython{a} python3-email-validator{a} python3-fastapi{a} python3-flask{a} python3-flask-bootstrap{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-markdown{a} python3-markdown-it{a} python3-markupsafe{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pystow{a} python3-pytest{a} python3-rdflib{a} python3-rdflib-endpoint{a} python3-requests{a} python3-rich{a} python3-setuptools{a} python3-sniffio{a} python3-sortedcontainers{a} python3-soupsieve{a} python3-starlette{a} python3-tabulate{a} python3-toml{a} python3-tqdm{a} python3-trie{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-uvicorn{a} python3-uvloop{a} python3-werkzeug{a} python3-wheel{a} python3-wsproto{a} python3-wtforms{a} python3-yaml{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-aiofiles python3-asgiref python3-babel python3-bottleneck python3-cryptography python3-dotenv python3-h2 python3-html5lib python3-html5rdf python3-lxml python3-matplotlib python3-multipart python3-networkx python3-numexpr python3-odf python3-openpyxl python3-openssl python3-orjson python3-pyinotify python3-scipy python3-simplejson python3-tables wget 0 packages upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 52.7 MB of archives. After unpacking 283 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-1+b2 [49.3 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 python3-toml all 0.10.2-1 [16.2 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-build all 1.2.2-1 [36.0 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-sniffio all 1.3.1-1 [7120 B] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-anyio all 4.6.2-4 [60.0 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-soupsieve all 2.6-1 [38.3 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-bs4 all 4.12.3-3 [133 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3-click all 8.1.7-2 [94.3 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-pydantic-core arm64 2.23.4-2+b2 [1462 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-dnspython all 2.6.1-1 [161 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3-pydantic arm64 2.9.2-2 [343 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 python3-trie all 0.4.0+ds-1 [7640 B] Get: 98 http://deb.debian.org/debian trixie/main arm64 python3-curies all 0.7.10-3 [36.2 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 python3-starlette all 0.41.3-2 [51.2 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 python3-h11 all 0.14.0-1 [50.1 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 python3-wsproto all 1.2.0-1 [25.4 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 python3-uvloop arm64 0.21.0+ds1-1+b1 [672 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 python3-uvicorn all 0.32.0-1 [50.7 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 python3-fastapi all 0.115.5-1 [73.0 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b3 [14.0 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 python3-flask all 3.1.0-2 [106 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 python3-wtforms all 3.2.1-1 [68.8 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 python3-flask-bootstrap all 2.4.1+ds-1 [1092 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 python3-httpcore all 1.0.7-1 [44.7 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 python3-mdurl all 0.1.2-1 [9444 B] Get: 117 http://deb.debian.org/debian trixie/main arm64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 python3-rich all 13.7.1-1 [201 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 python3-httpx all 0.27.2-1 [77.6 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 121 http://deb.debian.org/debian trixie/main arm64 python3-markdown all 3.7-1 [85.1 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 python3-tqdm all 4.67.1-1 [91.0 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 python3-pystow all 0.5.5-1 [25.6 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 python3-rdflib all 7.1.1-2 [472 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 python3-rdflib-endpoint all 0.5.1-2 [14.2 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 python3-yaml arm64 6.0.2-1+b1 [148 kB] Fetched 52.7 MB in 0s (183 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20080 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20400 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21462 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../024-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../026-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../027-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../032-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../033-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../034-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../035-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../036-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../037-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../038-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../039-python3-pkg-resources_74.1.2-2_all.deb ... Unpacking python3-pkg-resources (74.1.2-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../040-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../041-python3-setuptools_74.1.2-2_all.deb ... Unpacking python3-setuptools (74.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../042-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../043-libblas3_3.12.0-4_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-4) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../044-libgfortran5_14.2.0-8_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-8) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../045-liblapack3_3.12.0-4_arm64.deb ... Unpacking liblapack3:arm64 (3.12.0-4) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../046-libuv1t64_1.48.0-7_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-7) ... Selecting previously unselected package libyaml-0-2:arm64. Preparing to unpack .../047-libyaml-0-2_0.2.5-1+b2_arm64.deb ... Unpacking libyaml-0-2:arm64 (0.2.5-1+b2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../048-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... 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Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-tqdm (4.67.1-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-starlette (0.41.3-2) ... Setting up python3-click (8.1.7-2) ... Setting up python3-bs4 (4.12.3-3) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pydantic (2.9.2-2) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-uvicorn (0.32.0-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-flask (3.1.0-2) ... Setting up python3-flask-bootstrap (2.4.1+ds-1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-pystow (0.5.5-1) ... Setting up python3-fastapi (0.115.5-1) ... Setting up python3-rdflib-endpoint (0.5.1-2) ... Setting up python3-curies (0.7.10-3) ... Setting up dh-python (6.20241024) ... Setting up python3-rich (13.7.1-1) ... Setting up pybuild-plugin-pyproject (6.20241024) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-httpx (0.27.2-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/325866/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/325866/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-bioregistry-0.11.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-bioregistry_0.11.12-3_source.changes dpkg-buildpackage: info: source package python-bioregistry dpkg-buildpackage: info: source version 0.11.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12 * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/bioregistry copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry copying src/bioregistry/summary.py -> build/lib/bioregistry copying src/bioregistry/version.py -> build/lib/bioregistry copying src/bioregistry/utils.py -> build/lib/bioregistry copying src/bioregistry/uri_format.py -> build/lib/bioregistry copying src/bioregistry/schema_utils.py -> build/lib/bioregistry copying src/bioregistry/resource_manager.py -> build/lib/bioregistry copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry copying src/bioregistry/resolve.py -> build/lib/bioregistry copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry copying src/bioregistry/parse_iri.py -> build/lib/bioregistry copying src/bioregistry/pandas.py -> build/lib/bioregistry copying src/bioregistry/metaresource_api.py -> build/lib/bioregistry copying src/bioregistry/lint.py -> build/lib/bioregistry copying src/bioregistry/license_standardizer.py -> build/lib/bioregistry copying src/bioregistry/constants.py -> build/lib/bioregistry copying src/bioregistry/compare.py -> build/lib/bioregistry copying src/bioregistry/collection_api.py -> build/lib/bioregistry copying src/bioregistry/cli.py -> build/lib/bioregistry copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry copying src/bioregistry/__main__.py -> build/lib/bioregistry copying src/bioregistry/__init__.py -> build/lib/bioregistry creating build/lib/bioregistry/schema copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema creating build/lib/bioregistry/health copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health creating build/lib/bioregistry/gh copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh creating build/lib/bioregistry/external copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external copying src/bioregistry/external/align.py -> build/lib/bioregistry/external copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external creating build/lib/bioregistry/export copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export creating build/lib/bioregistry/data copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data creating build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation creating build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks creating build/lib/bioregistry/app copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app copying src/bioregistry/app/test.py -> build/lib/bioregistry/app copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app copying src/bioregistry/app/api.py -> build/lib/bioregistry/app copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app creating build/lib/bioregistry/analysis copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis creating build/lib/bioregistry/external/zazuko copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko creating build/lib/bioregistry/external/wikidata copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata creating build/lib/bioregistry/external/uniprot copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot creating build/lib/bioregistry/external/togoid copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid creating build/lib/bioregistry/external/rrid copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid creating build/lib/bioregistry/external/re3data copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data creating build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons creating build/lib/bioregistry/external/pathguide copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide creating build/lib/bioregistry/external/ontobee copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee creating build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/__init__.py -> build/lib/bioregistry/external/ols creating build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry creating build/lib/bioregistry/external/ncbi copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi creating build/lib/bioregistry/external/n2t copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t creating build/lib/bioregistry/external/miriam copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam creating build/lib/bioregistry/external/lov copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov creating build/lib/bioregistry/external/integbio copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio creating build/lib/bioregistry/external/hl7 copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 creating build/lib/bioregistry/external/go copying src/bioregistry/external/go/__init__.py -> build/lib/bioregistry/external/go creating build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing creating build/lib/bioregistry/external/edam copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam creating build/lib/bioregistry/external/cropoct copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct creating build/lib/bioregistry/external/cheminf copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf creating build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus creating build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal creating build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink creating build/lib/bioregistry/external/biocontext copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext creating build/lib/bioregistry/external/bartoc copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc creating build/lib/bioregistry/external/aberowl copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl running egg_info creating src/bioregistry.egg-info writing src/bioregistry.egg-info/PKG-INFO writing dependency_links to src/bioregistry.egg-info/dependency_links.txt writing entry points to src/bioregistry.egg-info/entry_points.txt writing requirements to src/bioregistry.egg-info/requires.txt writing top-level names to src/bioregistry.egg-info/top_level.txt writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'Makefile' under directory 'docs' warning: no previously-included files matching '*.png' found under directory 'docs/img' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.gpickle' found anywhere in distribution no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/_data' no previously-included directories found matching 'docs/source/api' no previously-included directories found matching 'exports' no previously-included directories found matching 'notebooks' no previously-included directories found matching 'tests/.pytest_cache' warning: no previously-included files found matching 'docs/*.md' warning: no previously-included files found matching 'docs/guides/*.md' warning: no previously-included files found matching 'docs/_config.yml' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.flake8' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching '.readthedocs.yml' warning: no previously-included files found matching 'tox.ini' warning: no previously-included files found matching '.pre-commit-config.yaml' warning: no previously-included files found matching 'Dockerfile' warning: no previously-included files found matching 'CITATION.cff' warning: no files found matching '*.rst' adding license file 'LICENSE' writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.static' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.static' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.static' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.static' to be distributed and are already explicitly excluding 'bioregistry.app.static' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.templates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates' to be distributed and are already explicitly excluding 'bioregistry.app.templates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.templates.highlights' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.highlights' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.highlights' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.highlights' to be distributed and are already explicitly excluding 'bioregistry.app.templates.highlights' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.templates.meta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.meta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.meta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.meta' to be distributed and are already explicitly excluding 'bioregistry.app.templates.meta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.templates.resolve_errors' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.resolve_errors' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.resolve_errors' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.resolve_errors' to be distributed and are already explicitly excluding 'bioregistry.app.templates.resolve_errors' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/bioregistry/py.typed -> build/lib/bioregistry copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema copying src/bioregistry/data/README.md -> build/lib/bioregistry/data copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data copying src/bioregistry/curation/curated_papers.csv -> build/lib/bioregistry/curation creating build/lib/bioregistry/app/static copying src/bioregistry/app/static/logo.svg -> build/lib/bioregistry/app/static creating build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/base.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collection.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collections.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/context.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contexts.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributor.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributors.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/home.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/macros.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresources.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/prose.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/reference.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resources.html -> build/lib/bioregistry/app/templates creating build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/keywords.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/owners.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/relations.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/twitter.html -> build/lib/bioregistry/app/templates/highlights creating build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/access.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/acknowledgements.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/download.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/related.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/schema.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/summary.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/sustainability.html -> build/lib/bioregistry/app/templates/meta creating build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/analysis/paper_ranking_requirements.txt -> build/lib/bioregistry/analysis copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee copying src/bioregistry/external/ols/processed.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/processing_ols.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 copying src/bioregistry/external/go/processed.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/go/processing_go.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64 creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/bioregistry copying build/lib/bioregistry/py.typed -> build/bdist.linux-aarch64/wheel/./bioregistry creating build/bdist.linux-aarch64/wheel/bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-aarch64/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-aarch64/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-aarch64/wheel/./bioregistry/analysis creating build/bdist.linux-aarch64/wheel/bioregistry/app creating build/bdist.linux-aarch64/wheel/bioregistry/app/templates creating build/bdist.linux-aarch64/wheel/bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/resolve_errors creating build/bdist.linux-aarch64/wheel/bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/meta creating build/bdist.linux-aarch64/wheel/bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-aarch64/wheel/./bioregistry/app/templates creating build/bdist.linux-aarch64/wheel/bioregistry/app/static copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-aarch64/wheel/./bioregistry/app/static copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app copying build/lib/bioregistry/app/api.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app copying build/lib/bioregistry/app/test.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-aarch64/wheel/./bioregistry/app creating build/bdist.linux-aarch64/wheel/bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-aarch64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-aarch64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-aarch64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-aarch64/wheel/./bioregistry/benchmarks creating build/bdist.linux-aarch64/wheel/bioregistry/curation copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-aarch64/wheel/./bioregistry/curation creating build/bdist.linux-aarch64/wheel/bioregistry/data copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-aarch64/wheel/./bioregistry/data copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-aarch64/wheel/./bioregistry/data copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-aarch64/wheel/./bioregistry/data copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-aarch64/wheel/./bioregistry/data copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-aarch64/wheel/./bioregistry/data copying build/lib/bioregistry/data/README.md -> build/bdist.linux-aarch64/wheel/./bioregistry/data copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/data creating build/bdist.linux-aarch64/wheel/bioregistry/export copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-aarch64/wheel/./bioregistry/export creating build/bdist.linux-aarch64/wheel/bioregistry/external creating build/bdist.linux-aarch64/wheel/bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/aberowl creating build/bdist.linux-aarch64/wheel/bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/bartoc creating build/bdist.linux-aarch64/wheel/bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/biocontext creating build/bdist.linux-aarch64/wheel/bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/biolink creating build/bdist.linux-aarch64/wheel/bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/bioportal creating build/bdist.linux-aarch64/wheel/bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/cellosaurus creating build/bdist.linux-aarch64/wheel/bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/cheminf creating build/bdist.linux-aarch64/wheel/bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/cropoct creating build/bdist.linux-aarch64/wheel/bioregistry/external/edam copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/edam copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/edam creating build/bdist.linux-aarch64/wheel/bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/fairsharing creating build/bdist.linux-aarch64/wheel/bioregistry/external/go copying build/lib/bioregistry/external/go/processing_go.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/go creating build/bdist.linux-aarch64/wheel/bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-aarch64/wheel/./bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/hl7 creating build/bdist.linux-aarch64/wheel/bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/integbio creating build/bdist.linux-aarch64/wheel/bioregistry/external/lov copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/lov copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/lov creating build/bdist.linux-aarch64/wheel/bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/miriam creating build/bdist.linux-aarch64/wheel/bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/n2t creating build/bdist.linux-aarch64/wheel/bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/ncbi creating build/bdist.linux-aarch64/wheel/bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/obofoundry creating build/bdist.linux-aarch64/wheel/bioregistry/external/ols copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/ols creating build/bdist.linux-aarch64/wheel/bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/ontobee creating build/bdist.linux-aarch64/wheel/bioregistry/external/pathguide copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/pathguide creating build/bdist.linux-aarch64/wheel/bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/prefixcommons creating build/bdist.linux-aarch64/wheel/bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/re3data creating build/bdist.linux-aarch64/wheel/bioregistry/external/rrid copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/rrid creating build/bdist.linux-aarch64/wheel/bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/togoid creating build/bdist.linux-aarch64/wheel/bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/uniprot creating build/bdist.linux-aarch64/wheel/bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/wikidata creating build/bdist.linux-aarch64/wheel/bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-aarch64/wheel/./bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external/zazuko copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external copying build/lib/bioregistry/external/align.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-aarch64/wheel/./bioregistry/external creating build/bdist.linux-aarch64/wheel/bioregistry/gh copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-aarch64/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-aarch64/wheel/./bioregistry/gh creating build/bdist.linux-aarch64/wheel/bioregistry/health copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/health copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-aarch64/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-aarch64/wheel/./bioregistry/health copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-aarch64/wheel/./bioregistry/health creating build/bdist.linux-aarch64/wheel/bioregistry/schema copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-aarch64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-aarch64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-aarch64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-aarch64/wheel/./bioregistry/schema copying build/lib/bioregistry/__init__.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/__main__.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/cli.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/compare.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/constants.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/lint.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/pandas.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/resolve.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/utils.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/version.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/summary.py -> build/bdist.linux-aarch64/wheel/./bioregistry copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-aarch64/wheel/./bioregistry running install_egg_info Copying src/bioregistry.egg-info to build/bdist.linux-aarch64/wheel/./bioregistry-0.11.12.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/bioregistry-0.11.12.dist-info/WHEEL creating '/build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/.tmp-5354s684/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'bioregistry/__init__.py' adding 'bioregistry/__main__.py' adding 'bioregistry/bibliometrics.py' adding 'bioregistry/cli.py' adding 'bioregistry/collection_api.py' adding 'bioregistry/compare.py' adding 'bioregistry/constants.py' adding 'bioregistry/license_standardizer.py' adding 'bioregistry/lint.py' adding 'bioregistry/metaresource_api.py' adding 'bioregistry/pandas.py' adding 'bioregistry/parse_iri.py' adding 'bioregistry/parse_version_iri.py' adding 'bioregistry/py.typed' adding 'bioregistry/record_accumulator.py' adding 'bioregistry/resolve.py' adding 'bioregistry/resolve_identifier.py' adding 'bioregistry/resource_manager.py' adding 'bioregistry/schema_utils.py' adding 'bioregistry/summary.py' adding 'bioregistry/upload_ndex.py' adding 'bioregistry/uri_format.py' adding 'bioregistry/utils.py' adding 'bioregistry/version.py' adding 'bioregistry/analysis/__init__.py' adding 'bioregistry/analysis/bioregistry_diff.py' adding 'bioregistry/analysis/paper_ranking.py' adding 'bioregistry/analysis/paper_ranking_requirements.txt' adding 'bioregistry/app/__init__.py' adding 'bioregistry/app/api.py' adding 'bioregistry/app/cli.py' adding 'bioregistry/app/constants.py' adding 'bioregistry/app/impl.py' adding 'bioregistry/app/proxies.py' adding 'bioregistry/app/test.py' adding 'bioregistry/app/ui.py' adding 'bioregistry/app/utils.py' adding 'bioregistry/app/wsgi.py' adding 'bioregistry/app/static/logo.svg' adding 'bioregistry/app/templates/base.html' adding 'bioregistry/app/templates/collection.html' adding 'bioregistry/app/templates/collections.html' adding 'bioregistry/app/templates/context.html' adding 'bioregistry/app/templates/contexts.html' adding 'bioregistry/app/templates/contributor.html' adding 'bioregistry/app/templates/contributors.html' adding 'bioregistry/app/templates/home.html' adding 'bioregistry/app/templates/macros.html' adding 'bioregistry/app/templates/metaresource.html' adding 'bioregistry/app/templates/metaresources.html' adding 'bioregistry/app/templates/prose.html' adding 'bioregistry/app/templates/reference.html' adding 'bioregistry/app/templates/resource.html' adding 'bioregistry/app/templates/resources.html' adding 'bioregistry/app/templates/highlights/keywords.html' adding 'bioregistry/app/templates/highlights/owners.html' adding 'bioregistry/app/templates/highlights/relations.html' adding 'bioregistry/app/templates/highlights/twitter.html' adding 'bioregistry/app/templates/meta/access.html' adding 'bioregistry/app/templates/meta/acknowledgements.html' adding 'bioregistry/app/templates/meta/download.html' adding 'bioregistry/app/templates/meta/related.html' adding 'bioregistry/app/templates/meta/schema.html' adding 'bioregistry/app/templates/meta/summary.html' adding 'bioregistry/app/templates/meta/sustainability.html' adding 'bioregistry/app/templates/resolve_errors/disallowed_identifier.html' adding 'bioregistry/app/templates/resolve_errors/invalid_identifier.html' adding 'bioregistry/app/templates/resolve_errors/missing_prefix.html' adding 'bioregistry/app/templates/resolve_errors/missing_providers.html' adding 'bioregistry/benchmarks/__init__.py' adding 'bioregistry/benchmarks/__main__.py' adding 'bioregistry/benchmarks/cli.py' adding 'bioregistry/benchmarks/curie_parsing.py' adding 'bioregistry/benchmarks/curie_validation.py' adding 'bioregistry/benchmarks/uri_parsing.py' adding 'bioregistry/curation/__init__.py' adding 'bioregistry/curation/add_co_providers.py' adding 'bioregistry/curation/add_descriptions_from_gs.py' adding 'bioregistry/curation/add_examples.py' adding 'bioregistry/curation/add_examples_from_javert.py' adding 'bioregistry/curation/add_examples_from_ols.py' adding 'bioregistry/curation/add_ontology_regexes.py' adding 'bioregistry/curation/bulk_import.py' adding 'bioregistry/curation/clean_licenses.py' adding 'bioregistry/curation/clean_name_suffixes.py' adding 'bioregistry/curation/clean_publications.py' adding 'bioregistry/curation/cleanup_authors.py' adding 'bioregistry/curation/curated_papers.csv' adding 'bioregistry/curation/deprecation_diff.py' adding 'bioregistry/curation/enrich_publications.py' adding 'bioregistry/curation/fix_obo_purls.py' adding 'bioregistry/curation/import_pc_semiautomatic.py' adding 'bioregistry/curation/make_description_curation_sheet.py' adding 'bioregistry/curation/make_health_report_curation_sheet.py' adding 'bioregistry/curation/map_bartoc_via_wikidata.py' adding 'bioregistry/curation/map_re3data_via_fairsharing.py' adding 'bioregistry/curation/rename_metaprefix.py' adding 'bioregistry/curation/review_pc.py' adding 'bioregistry/curation/suggest_author_curation.py' adding 'bioregistry/curation/suggest_uniprot_providers.py' adding 'bioregistry/data/README.md' adding 'bioregistry/data/__init__.py' adding 'bioregistry/data/bioregistry.json' adding 'bioregistry/data/collections.json' adding 'bioregistry/data/contexts.json' adding 'bioregistry/data/metaregistry.json' adding 'bioregistry/data/mismatch.json' adding 'bioregistry/export/__init__.py' adding 'bioregistry/export/__main__.py' adding 'bioregistry/export/cli.py' adding 'bioregistry/export/prefix_maps.py' adding 'bioregistry/export/prefixcc.py' adding 'bioregistry/export/rdf_export.py' adding 'bioregistry/export/schema_export.py' adding 'bioregistry/export/sssom_export.py' adding 'bioregistry/export/tables_export.py' adding 'bioregistry/export/tsv_export.py' adding 'bioregistry/export/warnings_export.py' adding 'bioregistry/export/yaml_export.py' adding 'bioregistry/external/__init__.py' adding 'bioregistry/external/align.py' adding 'bioregistry/external/alignment_utils.py' adding 'bioregistry/external/aberowl/__init__.py' adding 'bioregistry/external/aberowl/processed.json' adding 'bioregistry/external/bartoc/__init__.py' adding 'bioregistry/external/bartoc/processed.json' adding 'bioregistry/external/biocontext/__init__.py' adding 'bioregistry/external/biocontext/processed.json' adding 'bioregistry/external/biolink/__init__.py' adding 'bioregistry/external/biolink/processed.json' adding 'bioregistry/external/biolink/processing_biolink.json' adding 'bioregistry/external/bioportal/__init__.py' adding 'bioregistry/external/bioportal/agroportal.json' adding 'bioregistry/external/bioportal/agroportal.py' adding 'bioregistry/external/bioportal/bioportal.json' adding 'bioregistry/external/bioportal/bioportal.py' adding 'bioregistry/external/bioportal/ecoportal.json' adding 'bioregistry/external/bioportal/ecoportal.py' adding 'bioregistry/external/cellosaurus/__init__.py' adding 'bioregistry/external/cellosaurus/processed.json' adding 'bioregistry/external/cheminf/__init__.py' adding 'bioregistry/external/cheminf/processed.json' adding 'bioregistry/external/cropoct/__init__.py' adding 'bioregistry/external/cropoct/processed.json' adding 'bioregistry/external/edam/__init__.py' adding 'bioregistry/external/edam/processed.json' adding 'bioregistry/external/fairsharing/__init__.py' adding 'bioregistry/external/fairsharing/processed.json' adding 'bioregistry/external/go/__init__.py' adding 'bioregistry/external/go/processed.json' adding 'bioregistry/external/go/processing_go.json' adding 'bioregistry/external/hl7/OID_Report.csv' adding 'bioregistry/external/hl7/__init__.py' adding 'bioregistry/external/integbio/__init__.py' adding 'bioregistry/external/integbio/processed.json' adding 'bioregistry/external/lov/__init__.py' adding 'bioregistry/external/lov/processed.json' adding 'bioregistry/external/miriam/__init__.py' adding 'bioregistry/external/miriam/processed.json' adding 'bioregistry/external/n2t/__init__.py' adding 'bioregistry/external/n2t/processed.json' adding 'bioregistry/external/ncbi/__init__.py' adding 'bioregistry/external/ncbi/processed.json' adding 'bioregistry/external/obofoundry/__init__.py' adding 'bioregistry/external/obofoundry/processed.json' adding 'bioregistry/external/ols/__init__.py' adding 'bioregistry/external/ols/processed.json' adding 'bioregistry/external/ols/processing_ols.json' adding 'bioregistry/external/ontobee/__init__.py' adding 'bioregistry/external/ontobee/processed.json' adding 'bioregistry/external/pathguide/__init__.py' adding 'bioregistry/external/prefixcommons/__init__.py' adding 'bioregistry/external/prefixcommons/processed.json' adding 'bioregistry/external/re3data/__init__.py' adding 'bioregistry/external/re3data/processed.json' adding 'bioregistry/external/rrid/__init__.py' adding 'bioregistry/external/togoid/__init__.py' adding 'bioregistry/external/togoid/processed.json' adding 'bioregistry/external/uniprot/__init__.py' adding 'bioregistry/external/uniprot/processed.json' adding 'bioregistry/external/wikidata/__init__.py' adding 'bioregistry/external/wikidata/processed.json' adding 'bioregistry/external/zazuko/__init__.py' adding 'bioregistry/external/zazuko/processed.json' adding 'bioregistry/gh/__init__.py' adding 'bioregistry/gh/github_client.py' adding 'bioregistry/gh/new_prefix.py' adding 'bioregistry/health/__init__.py' adding 'bioregistry/health/__main__.py' adding 'bioregistry/health/check_homepages.py' adding 'bioregistry/health/check_providers.py' adding 'bioregistry/health/cli.py' adding 'bioregistry/schema/__init__.py' adding 'bioregistry/schema/constants.py' adding 'bioregistry/schema/schema.json' adding 'bioregistry/schema/struct.py' adding 'bioregistry/schema/utils.py' adding 'bioregistry-0.11.12.dist-info/LICENSE' adding 'bioregistry-0.11.12.dist-info/METADATA' adding 'bioregistry-0.11.12.dist-info/WHEEL' adding 'bioregistry-0.11.12.dist-info/entry_points.txt' adding 'bioregistry-0.11.12.dist-info/top_level.txt' adding 'bioregistry-0.11.12.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built bioregistry-0.11.12-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build; python3.12 -m pytest -k 'not test_url and not test_url_banana and not test_obolibrary_example and not test_usages ' ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build configfile: pyproject.toml plugins: anyio-4.6.2, typeguard-4.4.1 collected 137 items / 6 deselected / 131 selected tests/test_api.py . [ 0%] tests/test_collections.py ... [ 3%] tests/test_contexts.py .... [ 6%] tests/test_data.py ...................s............................s... [ 45%] tests/test_data_slow.py ... [ 48%] tests/test_duplicates.py .. [ 49%] tests/test_identifiers_org.py .... [ 52%] tests/test_indra.py ss [ 54%] tests/test_manager.py ........... [ 62%] tests/test_metaregistry.py ..... [ 66%] tests/test_obofoundry.py . [ 67%] tests/test_ols.py . [ 67%] tests/test_pandas.py .s.... [ 72%] tests/test_resolve.py ....... [ 77%] tests/test_sparql.py s [ 78%] tests/test_utils.py .. [ 80%] tests/test_web/test_api.py ................ [ 92%] tests/test_web/test_ui.py .......... [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pydantic/main.py:1159: 1778 warnings tests/test_contexts.py: 1778 warnings tests/test_manager.py: 19657 warnings tests/test_web/test_api.py: 5336 warnings /usr/lib/python3/dist-packages/pydantic/main.py:1159: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.9/migration/ warnings.warn( ../../../../../../usr/lib/python3/dist-packages/pydantic/main.py:1114: 7112 warnings tests/test_api.py: 14 warnings tests/test_collections.py: 89 warnings tests/test_contexts.py: 240779 warnings tests/test_data.py: 276342 warnings tests/test_data_slow.py: 382097 warnings tests/test_identifiers_org.py: 2275 warnings tests/test_manager.py: 473548 warnings tests/test_metaregistry.py: 333 warnings tests/test_resolve.py: 11872 warnings tests/test_web/test_api.py: 9338 warnings tests/test_web/test_ui.py: 18427 warnings /usr/lib/python3/dist-packages/pydantic/main.py:1114: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.9/migration/ warnings.warn('The `dict` method is deprecated; use `model_dump` instead.', category=PydanticDeprecatedSince20) bioregistry/app/api.py:137 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build/bioregistry/app/api.py:137: DeprecationWarning: `example` has been deprecated, please use `examples` instead prefix: str = Path( bioregistry/app/api.py:185 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build/bioregistry/app/api.py:185: DeprecationWarning: `example` has been deprecated, please use `examples` instead METAPREFIX_PATH = Path( bioregistry/app/api.py:353 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build/bioregistry/app/api.py:353: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path( bioregistry/app/api.py:405 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build/bioregistry/app/api.py:405: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path(title="Context Key", description="The context key", example="obo"), ../../../../../../usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14 /usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14: DeprecationWarning: starlette.middleware.wsgi is deprecated and will be removed in a future release. Please refer to https://github.com/abersheeran/a2wsgi as a replacement. warnings.warn( tests/test_data.py: 1 warning tests/test_metaregistry.py: 32 warnings tests/test_web/test_ui.py: 22 warnings /usr/lib/python3/dist-packages/pydantic/_internal/_model_construction.py:293: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.9/migration/ warnings.warn( tests/test_web/test_api.py::TestWeb::test_ui_resource_rdf tests/test_web/test_ui.py::TestUI::test_ui_collection_rdf tests/test_web/test_ui.py::TestUI::test_ui_registry_rdf /usr/lib/python3/dist-packages/rdflib/plugins/parsers/notation3.py:2050: DeprecationWarning: ConjunctiveGraph is deprecated, use Dataset instead. conj_graph = ConjunctiveGraph(store=graph.store) tests/test_web/test_ui.py::TestUI::test_ui tests/test_web/test_ui.py::TestUI::test_ui /usr/lib/python3/dist-packages/pydantic/main.py:1355: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.9/migration/ warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html == 125 passed, 6 skipped, 6 deselected, 1450840 warnings in 287.38s (0:04:47) == create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioregistry/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-bioregistry-0.11.12' sed -i 's#https://raw.githubusercontent.com/biopragmatics/bioregistry/main/docs/img/#file://#' \ debian/python3-bioregistry/usr/lib/python3*/dist-packages/bioregistry/app/templates/meta/summary.html make[1]: Leaving directory '/build/reproducible-path/python-bioregistry-0.11.12' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioregistry' in '../python3-bioregistry_0.11.12-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioregistry_0.11.12-3_arm64.buildinfo dpkg-genchanges --build=binary -O../python-bioregistry_0.11.12-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/325866/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/325866/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/325866 and its subdirectories I: Current time: Sun Dec 1 01:02:46 +14 2024 I: pbuilder-time-stamp: 1732964566