I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 21 02:27:12 +14 2025 I: pbuilder-time-stamp: 1750422432 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [octave-stk_2.8.1-1.dsc] I: copying [./octave-stk_2.8.1.orig.tar.gz] I: copying [./octave-stk_2.8.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jul 2 09:44:43 2023 gpgv: using RSA key 53951D95272E0C5B82BE8C4A2CECE9350ECEBE4A gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./octave-stk_2.8.1-1.dsc: no acceptable signature found dpkg-source: info: extracting octave-stk in octave-stk-2.8.1 dpkg-source: info: unpacking octave-stk_2.8.1.orig.tar.gz dpkg-source: info: unpacking octave-stk_2.8.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0003-Mark-expected-failure.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/290050/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 20 12:27 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/290050/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/290050/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=00b11753e81740d08093f0583bcc8d83 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=290050 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KDyetHNa/pbuilderrc_fPBJ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KDyetHNa/b2 --logfile b2/build.log octave-stk_2.8.1-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 18 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/290050/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-octave dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-octave; however: Package dh-sequence-octave is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: aglfn{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cme{a} debhelper{a} dh-autoreconf{a} dh-octave{a} dh-octave-autopkgtest{a} dh-strip-nondeterminism{a} diffstat{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-freefont-otf{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} gnuplot-data{a} gnuplot-nox{a} gpg{a} gpgconf{a} groff-base{a} hdf5-helpers{a} ibverbs-providers{a} intltool-debian{a} iso-codes{a} libabsl20230802{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libaliased-perl{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libaom3{a} libapp-cmd-perl{a} libapt-pkg-perl{a} libarchive-zip-perl{a} libarpack2t64{a} libarray-intspan-perl{a} libasound2-data{a} libasound2t64{a} libassuan0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libberkeleydb-perl{a} libblas-dev{a} libblas3{a} libboolean-perl{a} libbrotli1{a} libbsd0{a} libbtf2{a} libcairo2{a} libcamd3{a} libcapture-tiny-perl{a} libcarp-assert-more-perl{a} libcbor0.10{a} libccolamd3{a} libcgi-pm-perl{a} libcholmod5{a} libclass-c3-perl{a} libclass-data-inheritable-perl{a} libclass-load-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-choose-perl{a} libclone-perl{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libconfig-model-backend-yaml-perl{a} libconfig-model-dpkg-perl{a} libconfig-model-perl{a} libconfig-tiny-perl{a} libconst-fast-perl{a} libconvert-binhex-perl{a} libcpanel-json-xs-perl{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdata-dpath-perl{a} libdata-messagepack-perl{a} libdata-optlist-perl{a} libdata-section-perl{a} libdata-validate-domain-perl{a} libdata-validate-ip-perl{a} libdata-validate-uri-perl{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-size-perl{a} libdevel-stacktrace-perl{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libemail-address-xs-perl{a} libencode-locale-perl{a} liberror-perl{a} libevdev2{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexception-class-perl{a} libexpat1{a} libexporter-lite-perl{a} libexporter-tiny-perl{a} libfabric1{a} libfeature-compat-class-perl{a} libfeature-compat-try-perl{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi3{a} libfftw3-single3{a} libfido2-1{a} libfile-basedir-perl{a} libfile-find-rule-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libflac12t64{a} libfltk-gl1.3t64{a} libfltk1.3t64{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd3{a} libgetopt-long-descriptive-perl{a} libgfortran-13-dev{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglapi-mesa{a} libglib2.0-0t64{a} libglpk40{a} libglu1-mesa{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphicsmagick++-q16-12t64{a} libgraphicsmagick-q16-3t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhash-merge-perl{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhdf5-openmpi-103-1t64{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhsa-runtime64-1{a} libhsakmt1{a} libhtml-form-perl{a} libhtml-html5-entities-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tokeparser-simple-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhwloc-plugins{a} libhwloc15{a} libhwy1t64{a} libhypre-2.28.0{a} libibverbs1{a} libice6{a} libicu72{a} libimport-into-perl{a} libindirect-perl{a} libinput-bin{a} libinput10{a} libio-html-perl{a} libio-interactive-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libio-stringy-perl{a} libio-tiecombine-perl{a} libipc-run3-perl{a} libipc-system-simple-perl{a} libiterator-perl{a} libiterator-util-perl{a} libjack-jackd2-0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjson-maybexs-perl{a} libjson-perl{a} libjxl0.7{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblist-compare-perl{a} liblist-moreutils-perl{a} liblist-moreutils-xs-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} libllvm17t64{a} liblog-any-adapter-screen-perl{a} liblog-any-perl{a} liblog-log4perl-perl{a} libltdl7{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} liblz1{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libmailtools-perl{a} libmarkdown2{a} libmd4c0{a} libmetis5{a} libmime-tools-perl{a} libmldbm-perl{a} libmodule-implementation-perl{a} libmodule-pluggable-perl{a} libmodule-runtime-perl{a} libmoo-perl{a} libmoox-aliases-perl{a} libmouse-perl{a} libmousex-nativetraits-perl{a} libmousex-strictconstructor-perl{a} libmp3lame0{a} libmpg123-0t64{a} libmro-compat-perl{a} libmtdev1t64{a} libmumps-5.6t64{a} libmunge2{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnet-domain-tld-perl{a} libnet-http-perl{a} libnet-ipv6addr-perl{a} libnet-netmask-perl{a} libnet-smtp-ssl-perl{a} libnet-ssleay-perl{a} libnetaddr-ip-perl{a} libnghttp2-14{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libnumber-compare-perl{a} libobject-pad-perl{a} libogg0{a} libopengl0{a} libopenmpi3t64{a} libopus0{a} libpackage-stash-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparams-util-perl{a} libparams-validate-perl{a} libparse-debcontrol-perl{a} libparse-recdescent-perl{a} libpath-iterator-rule-perl{a} libpath-tiny-perl{a} libpciaccess0{a} libpcre2-16-0{a} libperlio-gzip-perl{a} libperlio-utf8-strict-perl{a} libpetsc-real3.19t64{a} libpipeline1{a} libpixman-1-0{a} libpmix2t64{a} libpng16-16t64{a} libpod-constants-perl{a} libpod-parser-perl{a} libpod-pom-perl{a} libportaudio2{a} libproc-processtable-perl{a} libpsl5t64{a} libpthread-stubs0-dev{a} libptscotch-7.0{a} libqhull-r8.0{a} libqrupdate1{a} libqscintilla2-qt5-15{a} libqscintilla2-qt5-l10n{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} librav1e0{a} librdmacm1t64{a} libreadline-dev{a} libreadline8t64{a} libregexp-common-perl{a} libregexp-pattern-license-perl{a} libregexp-pattern-perl{a} libregexp-wildcards-perl{a} librole-tiny-perl{a} librtmp1{a} libsamplerate0{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libsensors-config{a} libsensors5{a} libsereal-decoder-perl{a} libsereal-encoder-perl{a} libset-intspan-perl{a} libsharpyuv0{a} libsm6{a} libsndfile1{a} libsoftware-copyright-perl{a} libsoftware-license-perl{a} libsoftware-licensemoreutils-perl{a} libsort-versions-perl{a} libspqr4{a} libssh2-1t64{a} libssl-dev{a} libstrictures-perl{a} libstring-copyright-perl{a} libstring-escape-perl{a} libstring-license-perl{a} libstring-rewriteprefix-perl{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libsub-quote-perl{a} libsub-uplevel-perl{a} libsuitesparseconfig7{a} libsundials-ida6{a} libsundials-nvecparallel-petsc6{a} libsundials-sunlinsol3{a} libsundials-sunmatrix4{a} libsuperlu-dist8{a} libsuperlu6{a} libsvtav1enc1d1{a} libsyntax-keyword-try-perl{a} libsz2{a} libterm-readkey-perl{a} libtest-exception-perl{a} libtext-autoformat-perl{a} libtext-glob-perl{a} libtext-levenshtein-damerau-perl{a} libtext-levenshteinxs-perl{a} libtext-markdown-discount-perl{a} libtext-reform-perl{a} libtext-template-perl{a} libtext-unidecode-perl{a} libtext-xslate-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtime-duration-perl{a} libtime-moment-perl{a} libtimedate-perl{a} libtoml-tiny-perl{a} libtool{a} libtrilinos-amesos-13.2{a} libtrilinos-aztecoo-13.2{a} libtrilinos-epetra-13.2{a} libtrilinos-epetraext-13.2{a} libtrilinos-galeri-13.2{a} libtrilinos-ifpack-13.2{a} libtrilinos-kokkos-13.2{a} libtrilinos-ml-13.2{a} libtrilinos-teuchos-13.2{a} libtrilinos-trilinosss-13.2{a} libtrilinos-triutils-13.2{a} libtrilinos-zoltan-13.2{a} libtry-tiny-perl{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunicode-utf8-perl{a} liburi-perl{a} libvariable-magic-perl{a} libvorbis0a{a} libvorbisenc2{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpmux3{a} libwmflite-0.2-7{a} libwww-mechanize-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcursor1{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxnvctrl0{a} libxpm4{a} libxrender1{a} libxs-parse-keyword-perl{a} libxs-parse-sublike-perl{a} libxshmfence1{a} libxxf86vm1{a} libyaml-0-2{a} libyaml-libyaml-perl{a} libyaml-pp-perl{a} libyaml-tiny-perl{a} libyuv0{a} libz3-4{a} licensecheck{a} lintian{a} lzop{a} m4{a} man-db{a} mpi-default-bin{a} netbase{a} ocl-icd-libopencl1{a} octave{a} octave-common{a} octave-dev{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} patchutils{a} perl-openssl-defaults{a} plzip{a} po-debconf{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} unzip{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf bash-completion curl dbus default-jre-headless epstool fonts-liberation fonts-urw-base35 ghostscript gnupg groff krb5-locales libarchive-cpio-perl libauthen-sasl-perl libblis4 libcgi-fast-perl libclass-c3-xs-perl libconfig-model-approx-perl libconfig-model-lcdproc-perl libconfig-model-openssh-perl libconfig-model-systemd-perl libconfig-model-tkui-perl libdata-dump-perl libfreezethaw-perl libfuse-perl libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libipc-shareable-perl libjson-xs-perl libldap-common liblist-someutils-xs-perl liblog-dispatch-perl libltdl-dev libmail-sendmail-perl libmath-base85-perl libopenblas0 libpackage-stash-xs-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libre-engine-re2-perl libsasl2-modules libsocket6-perl libtie-ixhash-perl libtypes-serialiser-perl libxml-sax-expat-perl libxstring-perl lynx mesa-vulkan-drivers octave-doc pstoedit publicsuffix qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xauth xdg-user-dirs 0 packages upgraded, 532 newly installed, 0 to remove and 0 not upgraded. Need to get 211 MB of archives. After unpacking 890 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.2.1-3 [1324 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.1-1 [93.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20230828-1+b1 [89.1 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libcbor0.10 arm64 0.10.2-1.1 [27.0 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libfido2-1 arm64 1.14.0-1+b2 [73.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1~rc2-1 [22.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 openssh-client arm64 1:9.7p1-5 [902 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3 [23.4 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b1 [10.6 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1 [16.0 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b3 [22.3 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libio-stringy-perl all 2.111-3 [56.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libparams-validate-perl arm64 1.31-2+b2 [60.8 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libgetopt-long-descriptive-perl all 0.111-1 [27.8 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libio-tiecombine-perl all 1.005-3 [10.8 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libmodule-pluggable-perl all 5.2-5 [23.0 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libstring-rewriteprefix-perl all 0.009-1 [7140 B] Get: 53 http://deb.debian.org/debian trixie/main arm64 libapp-cmd-perl all 0.336-1 [65.8 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libboolean-perl all 0.46-3 [9924 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libcarp-assert-more-perl all 2.4.0-1 [20.2 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libclone-choose-perl all 0.010-2 [8676 B] Get: 61 http://deb.debian.org/debian trixie/main arm64 libhash-merge-perl all 0.302-1 [14.7 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libexporter-tiny-perl all 1.006002-1 [38.7 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 liblist-moreutils-xs-perl arm64 0.430-4+b1 [38.4 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 liblog-log4perl-perl all 1.57-1 [367 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libmouse-perl arm64 2.5.10-1+b5 [141 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libmousex-nativetraits-perl all 1.09-3 [53.5 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libmousex-strictconstructor-perl all 0.02-3 [5304 B] Get: 70 http://deb.debian.org/debian trixie/main arm64 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libpod-pom-perl all 2.01-4 [65.0 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libregexp-common-perl all 2017060201-3 [175 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libyaml-tiny-perl all 1.74-1 [30.7 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libconfig-model-perl all 2.153-3 [448 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libyaml-pp-perl all 0.38.0-1 [109 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 cme all 1.040-1 [68.8 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 85 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 gnuplot-data all 6.0.0+dfsg1-3 [72.3 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.2+dfsg-1+b4 [408 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 fonts-freefont-otf all 20211204+svn4273-2 [4328 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.0-3+b1 [478 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libaom3 arm64 3.8.2-2 [1528 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libdav1d7 arm64 1.4.1-1 [251 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libabsl20230802 arm64 20230802.1-4 [432 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libgav1-1 arm64 0.19.0-2+b1 [481 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 librav1e0 arm64 0.7.1-2 [630 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libsvtav1enc1d1 arm64 1.7.0+dfsg-2+b1 [1083 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libyuv0 arm64 0.0~git202401110.af6ac82-1 [123 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libavif16 arm64 1.0.4-3 [99.4 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-dav1d arm64 1.17.6-1+b2 [9888 B] Get: 125 http://deb.debian.org/debian trixie/main arm64 libde265-0 arm64 1.0.15-1+b1 [151 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-libde265 arm64 1.17.6-1+b2 [13.0 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libheif1 arm64 1.17.6-1+b2 [247 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-4 [307 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b1 [52.9 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libgd3 arm64 2.3.3-9+b3 [114 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.80.2-1 [1393 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 liblua5.4-0 arm64 5.4.6-3+b1 [135 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1 [462 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.13-3+b1 [71.3 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 8.3.0-2+b1 [2178 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3 [37.2 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2 [48.0 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.52.2+ds-1 [206 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.52.2+ds-1 [45.5 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.52.2+ds-1 [33.0 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 gnuplot-nox arm64 6.0.0+dfsg1-3 [837 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 dh-octave-autopkgtest all 1.8.0 [10.0 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libapt-pkg-perl arm64 0.1.40+b5 [63.8 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libarray-intspan-perl all 2.004-2 [25.7 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libyaml-libyaml-perl arm64 0.89+ds-1+b1 [33.2 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libconfig-model-backend-yaml-perl all 2.134-2 [10.8 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libexporter-lite-perl all 0.09-2 [10.7 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.28-1 [98.6 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libhtml-parser-perl arm64 3.82-1 [96.9 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.46-1+b2 [13.6 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 171 http://deb.debian.org/debian trixie/main arm64 libnet-ssleay-perl arm64 1.94-1+b1 [328 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 liberror-perl all 0.17029-2 [29.0 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libparse-debcontrol-perl all 2.005-6 [21.6 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libsoftware-copyright-perl all 0.012-2 [18.0 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libdata-section-perl all 0.200008-1 [13.1 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libtext-template-perl all 1.61-1 [54.4 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 libsoftware-license-perl all 0.104006-1 [116 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 libsoftware-licensemoreutils-perl all 1.009-1 [22.0 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get: 188 http://deb.debian.org/debian trixie/main arm64 libtext-reform-perl all 1.20-5 [36.0 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 libtext-autoformat-perl all 1.750000-2 [35.2 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 libtext-levenshtein-damerau-perl all 0.41-3 [12.3 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 libtoml-tiny-perl all 0.16-1 [23.4 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 libindirect-perl arm64 0.39-2+b3 [26.7 kB] Get: 193 http://deb.debian.org/debian trixie/main arm64 libxs-parse-keyword-perl arm64 0.42-1 [58.3 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 libxs-parse-sublike-perl arm64 0.21-2+b2 [38.8 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 libobject-pad-perl arm64 0.808-1+b2 [115 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 libfeature-compat-class-perl all 0.06-1 [10.7 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 libsyntax-keyword-try-perl arm64 0.29-2 [26.6 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 libfeature-compat-try-perl all 0.05-1 [10.4 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 liblog-any-perl all 1.717-1 [78.9 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 liblog-any-adapter-screen-perl all 0.140-2 [13.3 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 203 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1 [43.5 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b2 [11.2 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b2 [12.3 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get: 209 http://deb.debian.org/debian trixie/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get: 210 http://deb.debian.org/debian trixie/main arm64 libpath-iterator-rule-perl all 1.015-2 [41.7 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 libpod-constants-perl all 0.19-2 [17.3 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 libset-intspan-perl all 1.19-3 [25.3 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 libstring-copyright-perl all 0.003014-1 [23.4 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 libstring-escape-perl all 2010.002-3 [18.7 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 libregexp-pattern-license-perl all 3.11.0-1 [94.8 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 libregexp-pattern-perl all 0.2.14-2 [18.7 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 libstring-license-perl all 0.0.9-2 [35.5 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 licensecheck all 3.3.9-1 [50.1 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 diffstat arm64 1.66-1 [31.6 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 libassuan0 arm64 2.5.6-1+b1 [48.0 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 gpgconf arm64 2.2.40-3 [558 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 gpg arm64 2.2.40-3 [903 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 iso-codes all 4.16.0-1 [2936 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 libberkeleydb-perl arm64 0.64-2+b3 [120 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b3 [35.2 kB] Get: 228 http://deb.debian.org/debian trixie/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get: 230 http://deb.debian.org/debian trixie/main arm64 libcpanel-json-xs-perl arm64 4.37-1+b2 [127 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 233 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 235 http://deb.debian.org/debian trixie/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b3 [97.6 kB] Get: 243 http://deb.debian.org/debian trixie/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get: 245 http://deb.debian.org/debian trixie/main arm64 libdevel-size-perl arm64 0.84-1 [23.7 kB] Get: 246 http://deb.debian.org/debian trixie/main arm64 libemail-address-xs-perl arm64 1.05-1+b3 [28.3 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get: 250 http://deb.debian.org/debian trixie/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 251 http://deb.debian.org/debian trixie/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get: 253 http://deb.debian.org/debian trixie/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get: 254 http://deb.debian.org/debian trixie/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 261 http://deb.debian.org/debian trixie/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get: 267 http://deb.debian.org/debian trixie/main arm64 libperlio-gzip-perl arm64 0.20-1+b3 [17.4 kB] Get: 268 http://deb.debian.org/debian trixie/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b2 [11.4 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 libproc-processtable-perl arm64 0.636-1+b2 [41.6 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get: 271 http://deb.debian.org/debian trixie/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b2 [95.4 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b2 [97.6 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 libterm-readkey-perl arm64 2.38-2+b3 [24.4 kB] Get: 274 http://deb.debian.org/debian trixie/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b3 [8680 B] Get: 275 http://deb.debian.org/debian trixie/main arm64 libmarkdown2 arm64 2.2.7-2+b1 [33.2 kB] Get: 276 http://deb.debian.org/debian trixie/main arm64 libtext-markdown-discount-perl arm64 0.16-1+b2 [13.1 kB] Get: 277 http://deb.debian.org/debian trixie/main arm64 libdata-messagepack-perl arm64 1.02-1+b3 [31.2 kB] Get: 278 http://deb.debian.org/debian trixie/main arm64 libtext-xslate-perl arm64 3.5.9-2 [171 kB] Get: 279 http://deb.debian.org/debian trixie/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get: 280 http://deb.debian.org/debian trixie/main arm64 libtime-moment-perl arm64 0.44-2+b3 [72.2 kB] Get: 281 http://deb.debian.org/debian trixie/main arm64 libunicode-utf8-perl arm64 0.62-2+b2 [19.9 kB] Get: 282 http://deb.debian.org/debian trixie/main arm64 libcgi-pm-perl all 4.64-1 [217 kB] Get: 283 http://deb.debian.org/debian trixie/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get: 284 http://deb.debian.org/debian trixie/main arm64 libwww-mechanize-perl all 2.18-1 [114 kB] Get: 285 http://deb.debian.org/debian trixie/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 286 http://deb.debian.org/debian trixie/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 287 http://deb.debian.org/debian trixie/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get: 288 http://deb.debian.org/debian trixie/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b3 [299 kB] Get: 289 http://deb.debian.org/debian trixie/main arm64 liblz1 arm64 1.15~pre1-1 [37.7 kB] Get: 290 http://deb.debian.org/debian trixie/main arm64 plzip arm64 1.11-1 [58.8 kB] Get: 291 http://deb.debian.org/debian trixie/main arm64 liblzo2-2 arm64 2.10-2+b1 [49.2 kB] Get: 292 http://deb.debian.org/debian trixie/main arm64 lzop arm64 1.04-2 [82.8 kB] Get: 293 http://deb.debian.org/debian trixie/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get: 294 http://deb.debian.org/debian trixie/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get: 295 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28 [157 kB] Get: 296 http://deb.debian.org/debian trixie/main arm64 lintian all 2.117.0 [1052 kB] Get: 297 http://deb.debian.org/debian trixie/main arm64 libconfig-model-dpkg-perl all 3.004 [173 kB] Get: 298 http://deb.debian.org/debian trixie/main arm64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get: 299 http://deb.debian.org/debian trixie/main arm64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get: 300 http://deb.debian.org/debian trixie/main arm64 libmailtools-perl all 2.21-3 [88.6 kB] Get: 301 http://deb.debian.org/debian trixie/main arm64 libmime-tools-perl all 5.515-1 [203 kB] Get: 302 http://deb.debian.org/debian trixie/main arm64 libsuitesparseconfig7 arm64 1:7.7.0+dfsg-2 [22.3 kB] Get: 303 http://deb.debian.org/debian trixie/main arm64 libamd3 arm64 1:7.7.0+dfsg-2 [36.5 kB] Get: 304 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 305 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 306 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 307 http://deb.debian.org/debian trixie/main arm64 libarpack2t64 arm64 3.9.1-1.1+b1 [81.4 kB] Get: 308 http://deb.debian.org/debian trixie/main arm64 libccolamd3 arm64 1:7.7.0+dfsg-2 [36.1 kB] Get: 309 http://deb.debian.org/debian trixie/main arm64 libcamd3 arm64 1:7.7.0+dfsg-2 [33.3 kB] Get: 310 http://deb.debian.org/debian trixie/main arm64 libcolamd3 arm64 1:7.7.0+dfsg-2 [29.9 kB] Get: 311 http://deb.debian.org/debian trixie/main arm64 libcholmod5 arm64 1:7.7.0+dfsg-2 [507 kB] Get: 312 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 313 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 314 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 315 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get: 316 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 317 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 318 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b2 [207 kB] Get: 319 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.7.1-5 [405 kB] Get: 320 http://deb.debian.org/debian trixie/main arm64 libcxsparse4 arm64 1:7.7.0+dfsg-2 [73.7 kB] Get: 321 http://deb.debian.org/debian trixie/main arm64 libfftw3-double3 arm64 3.3.10-1+b2 [329 kB] Get: 322 http://deb.debian.org/debian trixie/main arm64 libfftw3-single3 arm64 3.3.10-1+b2 [497 kB] Get: 323 http://deb.debian.org/debian trixie/main arm64 libxfixes3 arm64 1:6.0.0-2+b1 [20.5 kB] Get: 324 http://deb.debian.org/debian trixie/main arm64 libxcursor1 arm64 1:1.2.1-1+b1 [35.8 kB] Get: 325 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 326 http://deb.debian.org/debian trixie/main arm64 libxinerama1 arm64 2:1.1.4-3+b1 [16.0 kB] Get: 327 http://deb.debian.org/debian trixie/main arm64 libfltk1.3t64 arm64 1.3.8-6.1 [518 kB] Get: 328 http://deb.debian.org/debian trixie/main arm64 libglvnd0 arm64 1.7.0-1+b1 [41.7 kB] Get: 329 http://deb.debian.org/debian trixie/main arm64 libdrm-common all 2.4.120-2 [7688 B] Get: 330 http://deb.debian.org/debian trixie/main arm64 libdrm2 arm64 2.4.120-2 [37.5 kB] Get: 331 http://deb.debian.org/debian trixie/main arm64 libglapi-mesa arm64 24.0.7-1 [46.0 kB] Get: 332 http://deb.debian.org/debian trixie/main arm64 libx11-xcb1 arm64 2:1.8.7-1+b1 [232 kB] Get: 333 http://deb.debian.org/debian trixie/main arm64 libxcb-dri2-0 arm64 1.15-1 [107 kB] Get: 334 http://deb.debian.org/debian trixie/main arm64 libxcb-dri3-0 arm64 1.15-1 [107 kB] Get: 335 http://deb.debian.org/debian trixie/main arm64 libxcb-glx0 arm64 1.15-1 [123 kB] Get: 336 http://deb.debian.org/debian trixie/main arm64 libxcb-present0 arm64 1.15-1 [106 kB] Get: 337 http://deb.debian.org/debian trixie/main arm64 libxcb-randr0 arm64 1.15-1 [117 kB] Get: 338 http://deb.debian.org/debian trixie/main arm64 libxcb-sync1 arm64 1.15-1 [109 kB] Get: 339 http://deb.debian.org/debian trixie/main arm64 libxcb-xfixes0 arm64 1.15-1 [110 kB] Get: 340 http://deb.debian.org/debian trixie/main arm64 libxshmfence1 arm64 1.3-1+b1 [9080 B] Get: 341 http://deb.debian.org/debian trixie/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get: 342 http://deb.debian.org/debian trixie/main arm64 libvulkan1 arm64 1.3.280.0-1 [119 kB] Get: 343 http://deb.debian.org/debian trixie/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [21.0 kB] Get: 344 http://deb.debian.org/debian trixie/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [18.7 kB] Get: 345 http://deb.debian.org/debian trixie/main arm64 libdrm-radeon1 arm64 2.4.120-2 [21.1 kB] Get: 346 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.8.12-3.1+b2 [6508 kB] Get: 347 http://deb.debian.org/debian trixie/main arm64 libllvm17t64 arm64 1:17.0.6-12 [21.3 MB] Get: 348 http://deb.debian.org/debian trixie/main arm64 libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 349 http://deb.debian.org/debian trixie/main arm64 libsensors5 arm64 1:3.6.0-9 [33.9 kB] Get: 350 http://deb.debian.org/debian trixie/main arm64 libgl1-mesa-dri arm64 24.0.7-1 [7018 kB] Get: 351 http://deb.debian.org/debian trixie/main arm64 libglx-mesa0 arm64 24.0.7-1 [150 kB] Get: 352 http://deb.debian.org/debian trixie/main arm64 libglx0 arm64 1.7.0-1+b1 [31.0 kB] Get: 353 http://deb.debian.org/debian trixie/main arm64 libgl1 arm64 1.7.0-1+b1 [90.9 kB] Get: 354 http://deb.debian.org/debian trixie/main arm64 libfltk-gl1.3t64 arm64 1.3.8-6.1 [59.7 kB] Get: 355 http://deb.debian.org/debian trixie/main arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2 [38.0 kB] Get: 356 http://deb.debian.org/debian trixie/main arm64 libltdl7 arm64 2.4.7-7+b1 [393 kB] Get: 357 http://deb.debian.org/debian trixie/main arm64 libglpk40 arm64 5.0-1+b1 [340 kB] Get: 358 http://deb.debian.org/debian trixie/main arm64 libopengl0 arm64 1.7.0-1+b1 [32.1 kB] Get: 359 http://deb.debian.org/debian trixie/main arm64 libglu1-mesa arm64 9.0.2-1.1+b1 [156 kB] Get: 360 http://deb.debian.org/debian trixie/main arm64 libhwy1t64 arm64 1.0.7-8.1 [356 kB] Get: 361 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.14-2+b1 [144 kB] Get: 362 http://deb.debian.org/debian trixie/main arm64 libjxl0.7 arm64 0.7.0-10.2+b3 [683 kB] Get: 363 http://deb.debian.org/debian trixie/main arm64 libwmflite-0.2-7 arm64 0.2.13-1.1+b2 [72.0 kB] Get: 364 http://deb.debian.org/debian trixie/main arm64 libgraphicsmagick-q16-3t64 arm64 1.4+really1.3.43-1 [1049 kB] Get: 365 http://deb.debian.org/debian trixie/main arm64 libgraphicsmagick++-q16-12t64 arm64 1.4+really1.3.43-1 [110 kB] Get: 366 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.7.1-5 [412 kB] Get: 367 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Get: 368 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Get: 369 http://deb.debian.org/debian trixie/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.3 [1035 kB] Get: 370 http://deb.debian.org/debian trixie/main arm64 libasound2-data all 1.2.11-1 [20.9 kB] Get: 371 http://deb.debian.org/debian trixie/main arm64 libasound2t64 arm64 1.2.11-1+b1 [334 kB] Get: 372 http://deb.debian.org/debian trixie/main arm64 libopus0 arm64 1.4-1+b1 [180 kB] Get: 373 http://deb.debian.org/debian trixie/main arm64 libsamplerate0 arm64 0.2.2-4+b1 [945 kB] Get: 374 http://deb.debian.org/debian trixie/main arm64 libjack-jackd2-0 arm64 1.9.21~dfsg-3+b3 [264 kB] Get: 375 http://deb.debian.org/debian trixie/main arm64 libportaudio2 arm64 19.6.0-1.2+b2 [58.9 kB] Get: 376 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB] Get: 377 http://deb.debian.org/debian trixie/main arm64 libqrupdate1 arm64 1.1.2-4+b1 [30.2 kB] Get: 378 http://deb.debian.org/debian trixie/main arm64 libqscintilla2-qt5-l10n all 2.14.1+dfsg-1 [105 kB] Get: 379 http://deb.debian.org/debian trixie/main arm64 shared-mime-info arm64 2.4-4 [755 kB] Get: 380 http://deb.debian.org/debian trixie/main arm64 libdouble-conversion3 arm64 3.3.0-1+b1 [37.0 kB] Get: 381 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b1 [217 kB] Get: 382 http://deb.debian.org/debian trixie/main arm64 libqt5core5t64 arm64 5.15.10+dfsg-7.2+b1 [1700 kB] Get: 383 http://deb.debian.org/debian trixie/main arm64 libwayland-server0 arm64 1.22.0-2.1+b1 [32.3 kB] Get: 384 http://deb.debian.org/debian trixie/main arm64 libgbm1 arm64 24.0.7-1 [40.3 kB] Get: 385 http://deb.debian.org/debian trixie/main arm64 libwayland-client0 arm64 1.22.0-2.1+b1 [24.8 kB] Get: 386 http://deb.debian.org/debian trixie/main arm64 libegl-mesa0 arm64 24.0.7-1 [112 kB] Get: 387 http://deb.debian.org/debian trixie/main arm64 libegl1 arm64 1.7.0-1+b1 [33.9 kB] Get: 388 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 389 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.0.10-1+b1 [53.7 kB] Get: 390 http://deb.debian.org/debian trixie/main arm64 libevdev2 arm64 1.13.1+dfsg-1+b1 [31.0 kB] Get: 391 http://deb.debian.org/debian trixie/main arm64 libmtdev1t64 arm64 1.1.6-1.2 [21.9 kB] Get: 392 http://deb.debian.org/debian trixie/main arm64 libgudev-1.0-0 arm64 238-5 [13.6 kB] Get: 393 http://deb.debian.org/debian trixie/main arm64 libwacom-common all 2.10.0-2 [62.5 kB] Get: 394 http://deb.debian.org/debian trixie/main arm64 libwacom9 arm64 2.10.0-2 [21.5 kB] Get: 395 http://deb.debian.org/debian trixie/main arm64 libinput-bin arm64 1.25.0-1+b2 [24.8 kB] Get: 396 http://deb.debian.org/debian trixie/main arm64 libinput10 arm64 1.25.0-1+b2 [116 kB] Get: 397 http://deb.debian.org/debian trixie/main arm64 libmd4c0 arm64 0.4.8-1+b1 [42.2 kB] Get: 398 http://deb.debian.org/debian trixie/main arm64 libdbus-1-3 arm64 1.14.10-4+b1 [195 kB] Get: 399 http://deb.debian.org/debian trixie/main arm64 libqt5dbus5t64 arm64 5.15.10+dfsg-7.2+b1 [205 kB] Get: 400 http://deb.debian.org/debian trixie/main arm64 libqt5network5t64 arm64 5.15.10+dfsg-7.2+b1 [653 kB] Get: 401 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.3-1+b1 [32.7 kB] Get: 402 http://deb.debian.org/debian trixie/main arm64 libxcb-icccm4 arm64 0.4.1-1.1+b1 [26.5 kB] Get: 403 http://deb.debian.org/debian trixie/main arm64 libxcb-util1 arm64 0.4.0-1+b1 [23.2 kB] Get: 404 http://deb.debian.org/debian trixie/main arm64 libxcb-image0 arm64 0.4.0-2+b1 [22.0 kB] Get: 405 http://deb.debian.org/debian trixie/main arm64 libxcb-keysyms1 arm64 0.4.0-1+b2 [16.0 kB] Get: 406 http://deb.debian.org/debian trixie/main arm64 libxcb-render-util0 arm64 0.3.9-1+b1 [17.5 kB] Get: 407 http://deb.debian.org/debian trixie/main arm64 libxcb-shape0 arm64 1.15-1 [106 kB] Get: 408 http://deb.debian.org/debian trixie/main arm64 libxcb-xinerama0 arm64 1.15-1 [105 kB] Get: 409 http://deb.debian.org/debian trixie/main arm64 libxcb-xinput0 arm64 1.15-1 [130 kB] Get: 410 http://deb.debian.org/debian trixie/main arm64 libxcb-xkb1 arm64 1.15-1 [128 kB] Get: 411 http://deb.debian.org/debian trixie/main arm64 xkb-data all 2.41-2 [795 kB] Get: 412 http://deb.debian.org/debian trixie/main arm64 libxkbcommon0 arm64 1.6.0-1+b1 [103 kB] Get: 413 http://deb.debian.org/debian trixie/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1+b1 [15.4 kB] Get: 414 http://deb.debian.org/debian trixie/main arm64 libqt5gui5t64 arm64 5.15.10+dfsg-7.2+b1 [3134 kB] Get: 415 http://deb.debian.org/debian trixie/main arm64 libavahi-common-data arm64 0.8-13+b2 [112 kB] Get: 416 http://deb.debian.org/debian trixie/main arm64 libavahi-common3 arm64 0.8-13+b2 [42.4 kB] Get: 417 http://deb.debian.org/debian trixie/main arm64 libavahi-client3 arm64 0.8-13+b2 [45.7 kB] Get: 418 http://deb.debian.org/debian trixie/main arm64 libcups2t64 arm64 2.4.7-1.2+b1 [230 kB] Get: 419 http://deb.debian.org/debian trixie/main arm64 libqt5widgets5t64 arm64 5.15.10+dfsg-7.2+b1 [2263 kB] Get: 420 http://deb.debian.org/debian trixie/main arm64 libqt5printsupport5t64 arm64 5.15.10+dfsg-7.2+b1 [197 kB] Get: 421 http://deb.debian.org/debian trixie/main arm64 libqscintilla2-qt5-15 arm64 2.14.1+dfsg-1+b2 [1026 kB] Get: 422 http://deb.debian.org/debian trixie/main arm64 libqt5sql5t64 arm64 5.15.10+dfsg-7.2+b1 [120 kB] Get: 423 http://deb.debian.org/debian trixie/main arm64 libqt5help5 arm64 5.15.10-7 [144 kB] Get: 424 http://deb.debian.org/debian trixie/main arm64 libqt5xml5t64 arm64 5.15.10+dfsg-7.2+b1 [121 kB] Get: 425 http://deb.debian.org/debian trixie/main arm64 libogg0 arm64 1.3.5-3+b1 [23.5 kB] Get: 426 http://deb.debian.org/debian trixie/main arm64 libflac12t64 arm64 1.4.3+ds-2.1 [169 kB] Get: 427 http://deb.debian.org/debian trixie/main arm64 libmp3lame0 arm64 3.100-6+b2 [352 kB] Get: 428 http://deb.debian.org/debian trixie/main arm64 libmpg123-0t64 arm64 1.32.6-3 [141 kB] Get: 429 http://deb.debian.org/debian trixie/main arm64 libvorbis0a arm64 1.3.7-2 [82.3 kB] Get: 430 http://deb.debian.org/debian trixie/main arm64 libvorbisenc2 arm64 1.3.7-2 [75.5 kB] Get: 431 http://deb.debian.org/debian trixie/main arm64 libsndfile1 arm64 1.2.2-1+b2 [184 kB] Get: 432 http://deb.debian.org/debian trixie/main arm64 libspqr4 arm64 1:7.7.0+dfsg-2 [122 kB] Get: 433 http://deb.debian.org/debian trixie/main arm64 libsundials-ida6 arm64 6.4.1+dfsg1-3+b5 [134 kB] Get: 434 http://deb.debian.org/debian trixie/main arm64 libbtf2 arm64 1:7.7.0+dfsg-2 [23.0 kB] Get: 435 http://deb.debian.org/debian trixie/main arm64 libklu2 arm64 1:7.7.0+dfsg-2 [76.3 kB] Get: 436 http://deb.debian.org/debian trixie/main arm64 libfftw3-long3 arm64 3.3.10-1+b2 [532 kB] Get: 437 http://deb.debian.org/debian trixie/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-8.1+b3 [125 kB] Get: 438 http://deb.debian.org/debian trixie/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-8.1+b3 [54.3 kB] Get: 439 http://deb.debian.org/debian trixie/main arm64 libnl-3-200 arm64 3.7.0-0.3 [56.5 kB] Get: 440 http://deb.debian.org/debian trixie/main arm64 libnl-route-3-200 arm64 3.7.0-0.3 [165 kB] Get: 441 http://deb.debian.org/debian trixie/main arm64 libibverbs1 arm64 50.0-2+b1 [58.2 kB] Get: 442 http://deb.debian.org/debian trixie/main arm64 ibverbs-providers arm64 50.0-2+b1 [315 kB] Get: 443 http://deb.debian.org/debian trixie/main arm64 librdmacm1t64 arm64 50.0-2+b1 [66.6 kB] Get: 444 http://deb.debian.org/debian trixie/main arm64 libfabric1 arm64 1.17.0-3+b1 [479 kB] Get: 445 http://deb.debian.org/debian trixie/main arm64 libhwloc15 arm64 2.10.0-1+b1 [140 kB] Get: 446 http://deb.debian.org/debian trixie/main arm64 libmunge2 arm64 0.5.15-4 [19.2 kB] Get: 447 http://deb.debian.org/debian trixie/main arm64 libpciaccess0 arm64 0.17-3+b1 [51.1 kB] Get: 448 http://deb.debian.org/debian trixie/main arm64 libxnvctrl0 arm64 535.171.04-1 [13.8 kB] Get: 449 http://deb.debian.org/debian trixie/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b1 [39.3 kB] Get: 450 http://deb.debian.org/debian trixie/main arm64 libhwloc-plugins arm64 2.10.0-1+b1 [18.0 kB] Get: 451 http://deb.debian.org/debian trixie/main arm64 libpmix2t64 arm64 5.0.2-3 [580 kB] Get: 452 http://deb.debian.org/debian trixie/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b1 [12.1 MB] Get: 453 http://deb.debian.org/debian trixie/main arm64 libnuma1 arm64 2.0.18-1 [21.4 kB] Get: 454 http://deb.debian.org/debian trixie/main arm64 libhsakmt1 arm64 5.7.0-1 [57.6 kB] Get: 455 http://deb.debian.org/debian trixie/main arm64 libhsa-runtime64-1 arm64 5.7.1-2 [276 kB] Get: 456 http://deb.debian.org/debian trixie/main arm64 libamdhip64-5 arm64 5.7.1-3 [8698 kB] Get: 457 http://deb.debian.org/debian trixie/main arm64 libucx0 arm64 1.16.0+ds-5 [938 kB] Get: 458 http://deb.debian.org/debian trixie/main arm64 libopenmpi3t64 arm64 4.1.6-13.3 [2170 kB] Get: 459 http://deb.debian.org/debian trixie/main arm64 libfftw3-mpi3 arm64 3.3.10-1+b2 [55.0 kB] Get: 460 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-103-1t64 arm64 1.10.10+repack-3.3 [1081 kB] Get: 461 http://deb.debian.org/debian trixie/main arm64 libcombblas2.0.0t64 arm64 2.0.0-3.1+b1 [277 kB] Get: 462 http://deb.debian.org/debian trixie/main arm64 libmetis5 arm64 5.1.0.dfsg-7+b1 [158 kB] Get: 463 http://deb.debian.org/debian trixie/main arm64 libptscotch-7.0 arm64 7.0.4-2 [605 kB] Get: 464 http://deb.debian.org/debian trixie/main arm64 libsuperlu-dist8 arm64 8.2.1+dfsg1-1+b2 [511 kB] Get: 465 http://deb.debian.org/debian trixie/main arm64 libhypre-2.28.0 arm64 2.28.0-8+b2 [1413 kB] Get: 466 http://deb.debian.org/debian trixie/main arm64 openmpi-common all 4.1.6-13.3 [169 kB] Get: 467 http://deb.debian.org/debian trixie/main arm64 openmpi-bin arm64 4.1.6-13.3 [225 kB] Get: 468 http://deb.debian.org/debian trixie/main arm64 mpi-default-bin arm64 1.15 [2408 B] Get: 469 http://deb.debian.org/debian trixie/main arm64 libscalapack-openmpi2.2 arm64 2.2.1-3.1 [1186 kB] Get: 470 http://deb.debian.org/debian trixie/main arm64 libmumps-5.6t64 arm64 5.6.2-2.1+b1 [1610 kB] Get: 471 http://deb.debian.org/debian trixie/main arm64 libsuperlu6 arm64 6.0.1+dfsg1-1+b1 [141 kB] Get: 472 http://deb.debian.org/debian trixie/main arm64 libscotch-7.0 arm64 7.0.4-2 [362 kB] Get: 473 http://deb.debian.org/debian trixie/main arm64 libtrilinos-kokkos-13.2 arm64 13.2.0-5+b3 [98.5 kB] Get: 474 http://deb.debian.org/debian trixie/main arm64 libtrilinos-teuchos-13.2 arm64 13.2.0-5+b3 [1134 kB] Get: 475 http://deb.debian.org/debian trixie/main arm64 libtrilinos-epetra-13.2 arm64 13.2.0-5+b3 [375 kB] Get: 476 http://deb.debian.org/debian trixie/main arm64 libtrilinos-triutils-13.2 arm64 13.2.0-5+b3 [111 kB] Get: 477 http://deb.debian.org/debian trixie/main arm64 libtrilinos-epetraext-13.2 arm64 13.2.0-5+b3 [388 kB] Get: 478 http://deb.debian.org/debian trixie/main arm64 libtrilinos-trilinosss-13.2 arm64 13.2.0-5+b3 [76.9 kB] Get: 479 http://deb.debian.org/debian trixie/main arm64 libtrilinos-amesos-13.2 arm64 13.2.0-5+b3 [107 kB] Get: 480 http://deb.debian.org/debian trixie/main arm64 libtrilinos-aztecoo-13.2 arm64 13.2.0-5+b3 [187 kB] Get: 481 http://deb.debian.org/debian trixie/main arm64 libtrilinos-galeri-13.2 arm64 13.2.0-5+b3 [84.9 kB] Get: 482 http://deb.debian.org/debian trixie/main arm64 libtrilinos-ifpack-13.2 arm64 13.2.0-5+b3 [431 kB] Get: 483 http://deb.debian.org/debian trixie/main arm64 libtrilinos-zoltan-13.2 arm64 13.2.0-5+b3 [327 kB] Get: 484 http://deb.debian.org/debian trixie/main arm64 libtrilinos-ml-13.2 arm64 13.2.0-5+b3 [859 kB] Get: 485 http://deb.debian.org/debian trixie/main arm64 libumfpack6 arm64 1:7.7.0+dfsg-2 [214 kB] Get: 486 http://deb.debian.org/debian trixie/main arm64 libpetsc-real3.19t64 arm64 3.19.6+dfsg1-2.2 [4949 kB] Get: 487 http://deb.debian.org/debian trixie/main arm64 libsundials-nvecparallel-petsc6 arm64 6.4.1+dfsg1-3+b5 [56.2 kB] Get: 488 http://deb.debian.org/debian trixie/main arm64 libsundials-sunmatrix4 arm64 6.4.1+dfsg1-3+b5 [98.6 kB] Get: 489 http://deb.debian.org/debian trixie/main arm64 libsundials-sunlinsol3 arm64 6.4.1+dfsg1-3+b5 [182 kB] Get: 490 http://deb.debian.org/debian trixie/main arm64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 491 http://deb.debian.org/debian trixie/main arm64 texinfo-lib arm64 7.1-3+b1 [213 kB] Get: 492 http://deb.debian.org/debian trixie/main arm64 tex-common all 6.18 [32.5 kB] Get: 493 http://deb.debian.org/debian trixie/main arm64 texinfo all 7.1-3 [1748 kB] Get: 494 http://deb.debian.org/debian trixie/main arm64 octave-common all 8.4.0-1 [6368 kB] Get: 495 http://deb.debian.org/debian trixie/main arm64 octave arm64 8.4.0-1+b3 [8299 kB] Get: 496 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2 [95.7 kB] Get: 497 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2 [337 kB] Get: 498 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-4 [153 kB] Get: 499 http://deb.debian.org/debian trixie/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-3.3 [88.0 kB] Get: 500 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.3 [60.1 kB] Get: 501 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-3.3 [38.5 kB] Get: 502 http://deb.debian.org/debian trixie/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-3.3 [119 kB] Get: 503 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-3.3 [21.2 kB] Get: 504 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Get: 505 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB] Get: 506 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB] Get: 507 http://deb.debian.org/debian trixie/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB] Get: 508 http://deb.debian.org/debian trixie/main arm64 libcurl4-openssl-dev arm64 8.7.1-5 [532 kB] Get: 509 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.2.1-3 [3089 kB] Get: 510 http://deb.debian.org/debian trixie/main arm64 hdf5-helpers arm64 1.10.10+repack-3.3 [23.4 kB] Get: 511 http://deb.debian.org/debian trixie/main arm64 libhdf5-dev arm64 1.10.10+repack-3.3 [2689 kB] Get: 512 http://deb.debian.org/debian trixie/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 513 http://deb.debian.org/debian trixie/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get: 514 http://deb.debian.org/debian trixie/main arm64 libxau-dev arm64 1:1.0.9-1+b1 [21.5 kB] Get: 515 http://deb.debian.org/debian trixie/main arm64 libxdmcp-dev arm64 1:1.1.2-3+b1 [40.6 kB] Get: 516 http://deb.debian.org/debian trixie/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 517 http://deb.debian.org/debian trixie/main arm64 libpthread-stubs0-dev arm64 0.4-1+b1 [5324 B] Get: 518 http://deb.debian.org/debian trixie/main arm64 libxcb1-dev arm64 1.15-1 [182 kB] Get: 519 http://deb.debian.org/debian trixie/main arm64 libx11-dev arm64 2:1.8.7-1+b1 [861 kB] Get: 520 http://deb.debian.org/debian trixie/main arm64 libglx-dev arm64 1.7.0-1+b1 [15.8 kB] Get: 521 http://deb.debian.org/debian trixie/main arm64 libgl-dev arm64 1.7.0-1+b1 [101 kB] Get: 522 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-3 [98.2 kB] Get: 523 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-3 [3584 kB] Get: 524 http://deb.debian.org/debian trixie/main arm64 libfftw3-bin arm64 3.3.10-1+b2 [43.2 kB] Get: 525 http://deb.debian.org/debian trixie/main arm64 libfftw3-dev arm64 3.3.10-1+b2 [1213 kB] Get: 526 http://deb.debian.org/debian trixie/main arm64 libgfortran-13-dev arm64 13.2.0-24 [401 kB] Get: 527 http://deb.debian.org/debian trixie/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-24 [9297 kB] Get: 528 http://deb.debian.org/debian trixie/main arm64 gfortran-13 arm64 13.2.0-24 [12.2 kB] Get: 529 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7 [1288 B] Get: 530 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:13.2.0-7 [1428 B] Get: 531 http://deb.debian.org/debian trixie/main arm64 octave-dev arm64 8.4.0-1+b3 [951 kB] Get: 532 http://deb.debian.org/debian trixie/main arm64 dh-octave all 1.8.0 [22.7 kB] Fetched 211 MB in 1s (211 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... 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Selecting previously unselected package libtext-levenshtein-damerau-perl. Preparing to unpack .../189-libtext-levenshtein-damerau-perl_0.41-3_all.deb ... Unpacking libtext-levenshtein-damerau-perl (0.41-3) ... Selecting previously unselected package libtoml-tiny-perl. Preparing to unpack .../190-libtoml-tiny-perl_0.16-1_all.deb ... Unpacking libtoml-tiny-perl (0.16-1) ... Selecting previously unselected package libindirect-perl. Preparing to unpack .../191-libindirect-perl_0.39-2+b3_arm64.deb ... Unpacking libindirect-perl (0.39-2+b3) ... Selecting previously unselected package libxs-parse-keyword-perl. Preparing to unpack .../192-libxs-parse-keyword-perl_0.42-1_arm64.deb ... Unpacking libxs-parse-keyword-perl (0.42-1) ... Selecting previously unselected package libxs-parse-sublike-perl:arm64. Preparing to unpack .../193-libxs-parse-sublike-perl_0.21-2+b2_arm64.deb ... Unpacking libxs-parse-sublike-perl:arm64 (0.21-2+b2) ... Selecting previously unselected package libobject-pad-perl. 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Unpacking libpath-iterator-rule-perl (1.015-2) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../210-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libpod-constants-perl. Preparing to unpack .../211-libpod-constants-perl_0.19-2_all.deb ... Unpacking libpod-constants-perl (0.19-2) ... Selecting previously unselected package libset-intspan-perl. Preparing to unpack .../212-libset-intspan-perl_1.19-3_all.deb ... Unpacking libset-intspan-perl (1.19-3) ... Selecting previously unselected package libstring-copyright-perl. Preparing to unpack .../213-libstring-copyright-perl_0.003014-1_all.deb ... Unpacking libstring-copyright-perl (0.003014-1) ... Selecting previously unselected package libstring-escape-perl. Preparing to unpack .../214-libstring-escape-perl_2010.002-3_all.deb ... Unpacking libstring-escape-perl (2010.002-3) ... Selecting previously unselected package libregexp-pattern-license-perl. Preparing to unpack .../215-libregexp-pattern-license-perl_3.11.0-1_all.deb ... Unpacking libregexp-pattern-license-perl (3.11.0-1) ... Selecting previously unselected package libregexp-pattern-perl. Preparing to unpack .../216-libregexp-pattern-perl_0.2.14-2_all.deb ... Unpacking libregexp-pattern-perl (0.2.14-2) ... Selecting previously unselected package libstring-license-perl. Preparing to unpack .../217-libstring-license-perl_0.0.9-2_all.deb ... Unpacking libstring-license-perl (0.0.9-2) ... Selecting previously unselected package licensecheck. Preparing to unpack .../218-licensecheck_3.3.9-1_all.deb ... Unpacking licensecheck (3.3.9-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../219-diffstat_1.66-1_arm64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../220-libassuan0_2.5.6-1+b1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.6-1+b1) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../221-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../222-gpgconf_2.2.40-3_arm64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package gpg. Preparing to unpack .../223-gpg_2.2.40-3_arm64.deb ... Unpacking gpg (2.2.40-3) ... Selecting previously unselected package iso-codes. Preparing to unpack .../224-iso-codes_4.16.0-1_all.deb ... Unpacking iso-codes (4.16.0-1) ... Selecting previously unselected package libberkeleydb-perl:arm64. Preparing to unpack .../225-libberkeleydb-perl_0.64-2+b3_arm64.deb ... Unpacking libberkeleydb-perl:arm64 (0.64-2+b3) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../226-libclass-xsaccessor-perl_1.19-4+b3_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b3) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../227-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... 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Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... Setting up libwayland-server0:arm64 (1.22.0-2.1+b1) ... Setting up libaom3:arm64 (3.8.2-2) ... Setting up libpciaccess0:arm64 (0.17-3+b1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:arm64 (1:1.0.9-1+b1) ... Setting up libdouble-conversion3:arm64 (3.3.0-1+b1) ... Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libfftw3-single3:arm64 (3.3.10-1+b2) ... Setting up libset-intspan-perl (1.19-3) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up libogg0:arm64 (1.3.5-3+b1) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up liblerc4:arm64 (4.0.0+ds-4+b1) ... Setting up libpod-pom-perl (2.01-4) ... Setting up bsdextrautils (2.40.1-1) ... Setting up hdf5-helpers (1.10.10+repack-3.3) ... Setting up libwmflite-0.2-7:arm64 (0.2.13-1.1+b2) ... Setting up libregexp-pattern-perl (0.2.14-2) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libdatrie1:arm64 (0.2.13-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libcbor0.10:arm64 (0.10.2-1.1) ... Setting up libclone-perl:arm64 (0.46-1+b2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:arm64 (4.37-1+b2) ... Setting up libglvnd0:arm64 (1.7.0-1+b1) ... Setting up libio-stringy-perl (2.111-3) ... Setting up libscotch-7.0:arm64 (7.0.4-2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up liblog-any-perl (1.717-1) ... Setting up libqscintilla2-qt5-l10n (2.14.1+dfsg-1) ... Setting up libyaml-pp-perl (0.38.0-1) ... Setting up libdevel-size-perl (0.84-1) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up libregexp-pattern-license-perl (3.11.0-1) ... Setting up libconvert-binhex-perl (1.125-3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up fonts-freefont-otf (20211204+svn4273-2) ... Setting up libio-interactive-perl (1.025-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libsensors-config (1:3.6.0-9) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.61.0-1+b1) ... Setting up libdeflate0:arm64 (1.20-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libfftw3-long3:arm64 (3.3.10-1+b2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libclone-choose-perl (0.010-2) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b1) ... Setting up xkb-data (2.41-2) ... Setting up liblzo2-2:arm64 (2.10-2+b1) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libtrilinos-kokkos-13.2:arm64 (13.2.0-5+b3) ... Setting up libmetis5:arm64 (5.1.0.dfsg-7+b1) ... Setting up libsvtav1enc1d1:arm64 (1.7.0+dfsg-2+b1) ... Setting up libcom-err2:arm64 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up texinfo-lib (7.1-3+b1) ... Setting up libassuan0:arm64 (2.5.6-1+b1) ... Setting up libmpg123-0t64:arm64 (1.32.6-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libyaml-tiny-perl (1.74-1) ... Setting up libpthread-stubs0-dev:arm64 (0.4-1+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up octave-common (8.4.0-1) ... Setting up libregexp-common-perl (2017060201-3) ... Setting up librav1e0:arm64 (0.7.1-2) ... Setting up libpcre2-16-0:arm64 (10.42-4+b1) ... Setting up libaec0:arm64 (1.1.3-1) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libopengl0:arm64 (1.7.0-1+b1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up libindirect-perl (0.39-2+b3) ... Setting up libxs-parse-sublike-perl:arm64 (0.21-2+b2) ... Setting up libkrb5support0:arm64 (1.20.1-6+b1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up liberror-perl (0.17029-2) ... Setting up libtrilinos-trilinosss-13.2:arm64 (13.2.0-5+b3) ... Setting up libasound2-data (1.2.11-1) ... Setting up libbtf2:arm64 (1:7.7.0+dfsg-2) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libboolean-perl (0.46-3) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:arm64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:arm64 (2.80.2-1) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.42-1) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libasound2t64:arm64 (1.2.11-1+b1) ... Setting up libmunge2:arm64 (0.5.15-4) ... Setting up liblog-log4perl-perl (1.57-1) ... Setting up libtext-reform-perl (1.20-5) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libio-tiecombine-perl (1.005-3) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libavahi-common-data:arm64 (0.8-13+b2) ... Setting up libncurses6:arm64 (6.5-2) ... Setting up libdbus-1-3:arm64 (1.14.10-4+b1) ... Setting up libfribidi0:arm64 (1.0.13-3+b1) ... Setting up libopus0:arm64 (1.4-1+b1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:arm64 (3.2.1-3) ... Setting up libpng16-16t64:arm64 (1.6.43-5) ... Setting up libhwloc15:arm64 (2.10.0-1+b1) ... Setting up libvorbis0a:arm64 (1.3.7-2) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtext-template-perl (1.61-1) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.21-14) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up liblist-moreutils-xs-perl (0.430-4+b1) ... Setting up libsensors5:arm64 (1:3.6.0-9) ... Setting up libjxl0.7:arm64 (0.7.0-10.2+b3) ... Setting up libk5crypto3:arm64 (1.20.1-6+b1) ... Setting up libltdl7:arm64 (2.4.7-7+b1) ... Setting up libfftw3-double3:arm64 (3.3.10-1+b2) ... Setting up libglapi-mesa:arm64 (24.0.7-1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:arm64 (14-20240330-1) ... Setting up libvulkan1:arm64 (1.3.280.0-1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up autoconf (2.71-3) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:arm64 (1.4.0-0.1) ... Setting up libarray-intspan-perl (2.004-2) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libexporter-lite-perl (0.09-2) ... Setting up libsub-name-perl:arm64 (0.27-1+b2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1) ... Setting up libsyntax-keyword-try-perl (0.29-2) ... Setting up libnuma1:arm64 (2.0.18-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.636-1+b2) ... Setting up libparse-recdescent-perl (1.967015+dfsg-4) ... Setting up libdav1d7:arm64 (1.4.1-1) ... Setting up libmtdev1t64:arm64 (1.1.6-1.2) ... Setting up sensible-utils (0.0.22) ... Setting up ocl-icd-libopencl1:arm64 (2.3.2-1+b1) ... Setting up libxshmfence1:arm64 (1.3-1+b1) ... Setting up libtiff6:arm64 (4.5.1+git230720-4) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up lzop (1.04-2) ... Setting up libjson-perl (4.10000-1) ... Setting up liblog-any-adapter-screen-perl (0.140-2) ... Setting up libnl-3-200:arm64 (3.7.0-0.3) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up openmpi-common (4.1.6-13.3) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libmd4c0:arm64 (0.4.8-1+b1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libmousex-strictconstructor-perl (0.02-3) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libsuitesparseconfig7:arm64 (1:7.7.0+dfsg-2) ... Setting up liblua5.4-0:arm64 (5.4.6-3+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libaliased-perl (0.34-3) ... Setting up libthai-data (0.1.29-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libabsl20230802:arm64 (20230802.1-4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libtext-autoformat-perl (1.750000-2) ... Setting up libkrb5-3:arm64 (1.20.1-6+b1) ... Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-8.1+b3) ... Setting up libglu1-mesa:arm64 (9.0.2-1.1+b1) ... Setting up libflac12t64:arm64 (1.4.3+ds-2.1) ... Setting up libtoml-tiny-perl (0.16-1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:arm64 (1.11.0-4.1+b2) ... Setting up libexporter-tiny-perl (1.006002-1) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfido2-1:arm64 (1.14.0-1+b2) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libde265-0:arm64 (1.0.15-1+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libgfortran-13-dev:arm64 (13.2.0-24) ... Setting up libsamplerate0:arm64 (0.2.2-4+b1) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:arm64 (1.4.0-0.1) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up libdrm-common (2.4.120-2) ... Setting up libyuv0:arm64 (0.0~git202401110.af6ac82-1) ... Setting up libevdev2:arm64 (1.13.1+dfsg-1+b1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libtext-levenshtein-damerau-perl (0.41-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:arm64 (2.2.7-2+b1) ... Setting up liburi-perl (5.28-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libgudev-1.0-0:arm64 (238-5) ... Setting up libmp3lame0:arm64 (3.100-6+b2) ... Setting up libblas-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libsz2:arm64 (1.1.3-1) ... Setting up libvorbisenc2:arm64 (1.3.7-2) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libwacom-common (2.10.0-2) ... Setting up libmousex-nativetraits-perl (1.09-3) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libxkbcommon0:arm64 (1.6.0-1+b1) ... Setting up libwayland-client0:arm64 (1.22.0-2.1+b1) ... Setting up libnet-ssleay-perl:arm64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gnuplot-data (6.0.0+dfsg1-3) ... Setting up libice6:arm64 (2:1.0.10-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5-2) ... Setting up libxcb1:arm64 (1.15-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up gettext (0.21-14+b1) ... Setting up libfeature-compat-try-perl (0.05-1) ... Setting up libarpack2t64:arm64 (3.9.1-1.1+b1) ... Setting up libxcb-xfixes0:arm64 (1.15-1) ... Setting up libamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxau-dev:arm64 (1:1.0.9-1+b1) ... Setting up libxcb-xinput0:arm64 (1.15-1) ... Setting up libtool (2.4.7-7) ... Setting up libcolamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up libfftw3-bin (3.3.10-1+b2) ... Setting up libwacom9:arm64 (2.10.0-2) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-8.1+b3) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libxcb-glx0:arm64 (1.15-1) ... Setting up libpod-constants-perl (0.19-2) ... Setting up libedit2:arm64 (3.1-20230828-1+b1) ... Setting up libhash-merge-perl (0.302-1) ... Setting up libxcb-keysyms1:arm64 (0.4.0-1+b2) ... Setting up libsoftware-copyright-perl (0.012-2) ... Setting up libaec-dev:arm64 (1.1.3-1) ... Setting up libxcb-shape0:arm64 (1.15-1) ... Setting up libavahi-common3:arm64 (0.8-13+b2) ... Setting up libcxsparse4:arm64 (1:7.7.0+dfsg-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3) ... Setting up libnet-http-perl (6.23-1) ... Setting up gfortran-13-aarch64-linux-gnu (13.2.0-24) ... Setting up libpath-iterator-rule-perl (1.015-2) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libxcb-render-util0:arm64 (0.3.9-1+b1) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libxcb-icccm4:arm64 (0.4.1-1.1+b1) ... Setting up libsundials-sunmatrix4:arm64 (6.4.1+dfsg1-3+b5) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libsuperlu6:arm64 (6.0.1+dfsg1-1+b1) ... Setting up libqrupdate1:arm64 (1.1.2-4+b1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1) ... Setting up libldap-2.5-0:arm64 (2.5.17+dfsg-1) ... Setting up libsundials-ida6:arm64 (6.4.1+dfsg1-3+b5) ... Setting up libcamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libxcb-util1:arm64 (0.4.0-1+b1) ... Setting up libinput-bin (1.25.0-1+b2) ... Setting up libxcb-xkb1:arm64 (1.15-1) ... Setting up libxcb-image0:arm64 (0.4.0-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.3) ... Setting up libobject-pad-perl (0.808-1+b2) ... Setting up libxcb-present0:arm64 (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up libthai0:arm64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libxdmcp-dev:arm64 (1:1.1.2-3+b1) ... Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxcb-xinerama0:arm64 (1.15-1) ... Setting up libllvm17t64:arm64 (1:17.0.6-12) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up libglpk40:arm64 (5.0-1+b1) ... Setting up libstring-copyright-perl (0.003014-1) ... Setting up libxcb-sync1:arm64 (1.15-1) ... Setting up gfortran-13 (13.2.0-24) ... Setting up shared-mime-info (2.4-4) ... Setting up libxkbcommon-x11-0:arm64 (1.6.0-1+b1) ... Setting up liblapack-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libgav1-1:arm64 (0.19.0-2+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libccolamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up libxcb-dri2-0:arm64 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libjack-jackd2-0:arm64 (1.9.21~dfsg-3+b3) ... Setting up libdrm2:arm64 (2.4.120-2) ... Setting up groff-base (1.23.0-4) ... Setting up libxcb-randr0:arm64 (1.15-1) ... Setting up libhtml-parser-perl:arm64 (3.82-1) ... Setting up gpgconf (2.2.40-3) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2+b1) ... Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up libsndfile1:arm64 (1.2.2-1+b2) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:arm64 (2:1.2.3-1+b1) ... Setting up libfftw3-dev:arm64 (3.3.10-1+b2) ... Setting up libavahi-client3:arm64 (0.8-13+b2) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libxcb-dri3-0:arm64 (1.15-1) ... Setting up libinput10:arm64 (1.25.0-1+b2) ... Setting up libportaudio2:arm64 (19.6.0-1.2+b2) ... Setting up libx11-xcb1:arm64 (2:1.8.7-1+b1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libibverbs1:arm64 (50.0-2+b1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libavif16:arm64 (1.0.4-3) ... Setting up libcarp-assert-more-perl (2.4.0-1) ... Setting up libcholmod5:arm64 (1:7.7.0+dfsg-2) ... Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... Setting up libxcb1-dev:arm64 (1.15-1) ... Setting up libxpm4:arm64 (1:3.5.17-1+b1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up libcurl4t64:arm64 (8.7.1-5) ... Setting up libgbm1:arm64 (24.0.7-1) ... Setting up ibverbs-providers:arm64 (50.0-2+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libspqr4:arm64 (1:7.7.0+dfsg-2) ... Setting up libdrm-radeon1:arm64 (2.4.120-2) ... Setting up openssh-client (1:9.7p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b3) ... Setting up libpango-1.0-0:arm64 (1.52.2+ds-1) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libgl1-mesa-dri:arm64 (24.0.7-1) ... Setting up libx11-dev:arm64 (2:1.8.7-1+b1) ... Setting up libcurl3t64-gnutls:arm64 (8.7.1-5) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libreadline-dev:arm64 (8.2-4) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.0-3+b1) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b2) ... Setting up libxnvctrl0:arm64 (535.171.04-1) ... Setting up libfeature-compat-class-perl (0.06-1) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libqt5core5t64:arm64 (5.15.10+dfsg-7.2+b1) ... Setting up libegl-mesa0:arm64 (24.0.7-1) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libmailtools-perl (2.21-3) ... Setting up libxfixes3:arm64 (1:6.0.0-2+b1) ... Setting up libcurl4-openssl-dev:arm64 (8.7.1-5) ... Setting up libklu2:arm64 (1:7.7.0+dfsg-2) ... Setting up libconfig-model-perl (2.153-3) ... Setting up libxinerama1:arm64 (2:1.1.4-3+b1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libumfpack6:arm64 (1:7.7.0+dfsg-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-section-perl (0.200008-1) ... Setting up libegl1:arm64 (1.7.0-1+b1) ... Setting up libqt5sql5t64:arm64 (5.15.10+dfsg-7.2+b1) ... Setting up librdmacm1t64:arm64 (50.0-2+b1) ... Setting up libpangoft2-1.0-0:arm64 (1.52.2+ds-1) ... Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libcups2t64:arm64 (2.4.7-1.2+b1) ... Setting up libhsakmt1:arm64 (5.7.0-1) ... Setting up libstring-rewriteprefix-perl (0.009-1) ... Setting up libpangocairo-1.0-0:arm64 (1.52.2+ds-1) ... Setting up libfabric1:arm64 (1.17.0-3+b1) ... Setting up libconfig-model-backend-yaml-perl (2.134-2) ... Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libqt5dbus5t64:arm64 (5.15.10+dfsg-7.2+b1) ... Setting up libglx-mesa0:arm64 (24.0.7-1) ... Setting up libglx0:arm64 (1.7.0-1+b1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libxcursor1:arm64 (1:1.2.1-1+b1) ... Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libqt5network5t64:arm64 (5.15.10+dfsg-7.2+b1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libhdf5-fortran-102t64:arm64 (1.10.10+repack-3.3) ... Setting up libqt5xml5t64:arm64 (5.15.10+dfsg-7.2+b1) ... Setting up debhelper (13.15.3) ... Setting up libhwloc-plugins:arm64 (2.10.0-1+b1) ... Setting up libmime-tools-perl (5.515-1) ... Setting up libsoftware-license-perl (0.104006-1) ... Setting up libclass-load-perl (0.25-2) ... Setting up libgl1:arm64 (1.7.0-1+b1) ... Setting up libpmix2t64:arm64 (5.0.2-3) ... Setting up texinfo (7.1-3) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up libglx-dev:arm64 (1.7.0-1+b1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libparams-validate-perl:arm64 (1.31-2+b2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libfltk1.3t64:arm64 (1.3.8-6.1) ... Setting up libgl-dev:arm64 (1.7.0-1+b1) ... Setting up libsoftware-licensemoreutils-perl (1.009-1) ... Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... Setting up libfltk-gl1.3t64:arm64 (1.3.8-6.1) ... Setting up libqt5gui5t64:arm64 (5.15.10+dfsg-7.2+b1) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up libstring-license-perl (0.0.9-2) ... Setting up libgetopt-long-descriptive-perl (0.111-1) ... Setting up licensecheck (3.3.9-1) ... Setting up libucx0:arm64 (1.16.0+ds-5) ... Setting up libqt5widgets5t64:arm64 (5.15.10+dfsg-7.2+b1) ... Setting up libapp-cmd-perl (0.336-1) ... Setting up libqt5help5:arm64 (5.15.10-7) ... Setting up libopenmpi3t64:arm64 (4.1.6-13.3) ... Setting up cme (1.040-1) ... Setting up openmpi-bin (4.1.6-13.3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libqt5printsupport5t64:arm64 (5.15.10+dfsg-7.2+b1) ... Setting up libptscotch-7.0:arm64 (7.0.4-2) ... Setting up mpi-default-bin (1.15) ... Setting up libcombblas2.0.0t64:arm64 (2.0.0-3.1+b1) ... Setting up libfftw3-mpi3:arm64 (3.3.10-1+b2) ... Setting up libqscintilla2-qt5-15:arm64 (2.14.1+dfsg-1+b2) ... Setting up libtrilinos-zoltan-13.2:arm64 (13.2.0-5+b3) ... Setting up libhdf5-openmpi-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libtrilinos-teuchos-13.2:arm64 (13.2.0-5+b3) ... Setting up libtrilinos-epetra-13.2:arm64 (13.2.0-5+b3) ... Setting up libtrilinos-aztecoo-13.2:arm64 (13.2.0-5+b3) ... Setting up libtrilinos-triutils-13.2:arm64 (13.2.0-5+b3) ... Setting up libscalapack-openmpi2.2:arm64 (2.2.1-3.1) ... Setting up libsuperlu-dist8:arm64 (8.2.1+dfsg1-1+b2) ... Setting up libmumps-5.6t64:arm64 (5.6.2-2.1+b1) ... Setting up libhypre-2.28.0:arm64 (2.28.0-8+b2) ... Setting up libtrilinos-epetraext-13.2:arm64 (13.2.0-5+b3) ... Setting up libtrilinos-galeri-13.2:arm64 (13.2.0-5+b3) ... Setting up libtrilinos-amesos-13.2:arm64 (13.2.0-5+b3) ... Setting up libtrilinos-ifpack-13.2:arm64 (13.2.0-5+b3) ... Setting up libtrilinos-ml-13.2:arm64 (13.2.0-5+b3) ... Setting up libpetsc-real3.19t64:arm64 (3.19.6+dfsg1-2.2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc_real.so.3.19.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc.so.3.19 (libpetsc.so.3.19) in auto mode Setting up libsundials-nvecparallel-petsc6:arm64 (6.4.1+dfsg1-3+b5) ... Setting up libsundials-sunlinsol3:arm64 (6.4.1+dfsg1-3+b5) ... Setting up libheif-plugin-dav1d:arm64 (1.17.6-1+b2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libheif-plugin-libde265:arm64 (1.17.6-1+b2) ... Setting up libwww-perl (6.77-1) ... Setting up libheif1:arm64 (1.17.6-1+b2) ... Setting up libparse-debcontrol-perl (2.005-6) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up libgd3:arm64 (2.3.3-9+b3) ... Setting up gnuplot-nox (6.0.0+dfsg1-3) ... update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up libgraphicsmagick-q16-3t64 (1.4+really1.3.43-1) ... Setting up lintian (2.117.0) ... Setting up libgraphicsmagick++-q16-12t64 (1.4+really1.3.43-1) ... Setting up libconfig-model-dpkg-perl (3.004) ... Setting up dh-octave-autopkgtest (1.8.0) ... Setting up octave (8.4.0-1+b3) ... Setting up octave-dev (8.4.0-1+b3) ... Setting up dh-octave (1.8.0) ... Processing triggers for libc-bin (2.38-10) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/290050/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/290050/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/octave-stk-2.8.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../octave-stk_2.8.1-1_source.changes dpkg-buildpackage: info: source package octave-stk dpkg-buildpackage: info: source version 2.8.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sébastien Villemot dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=octave dh_auto_clean -O--buildsystem=octave dh_octave_clean make[1]: Entering directory '/build/reproducible-path/octave-stk-2.8.1' make[1]: *** No rule to make target 'clean'. make[1]: *** No rule to make target 'distclean'. make[1]: Leaving directory '/build/reproducible-path/octave-stk-2.8.1' make[1]: Entering directory '/build/reproducible-path/octave-stk-2.8.1/src' rm -f *.o *.mex make[1]: *** No rule to make target 'distclean'. make[1]: Leaving directory '/build/reproducible-path/octave-stk-2.8.1/src' dh_autoreconf_clean -O--buildsystem=octave dh_clean -O--buildsystem=octave debian/rules binary dh binary --buildsystem=octave dh_update_autotools_config -O--buildsystem=octave dh_autoreconf -O--buildsystem=octave dh_octave_version -O--buildsystem=octave Checking the Octave version... ok dh_auto_configure -O--buildsystem=octave dh_auto_build -O--buildsystem=octave dh_auto_test -O--buildsystem=octave create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=octave dh_prep -O--buildsystem=octave dh_auto_install --destdir=debian/octave-stk/ -O--buildsystem=octave octave --no-gui --no-history --silent --no-init-file --no-window-system /usr/share/dh-octave/install-pkg.m /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages make[1]: Entering directory '/build/reproducible-path/octave-stk-2.8.1/src' /usr/bin/mkoctfile --verbose --mex --output __stk_dist_pairwise__.mex stk_dist_pairwise.c /usr/bin/mkoctfile --verbose --mex --output __get_column_number__.mex get_column_number.c /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixy__.mex stk_dist_matrixy.c /usr/bin/mkoctfile --verbose --mex --output __stk_filldist_discr_mex__.mex stk_filldist_discr_mex.c /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixy__.mex stk_gpquadform_matrixy.c /usr/bin/mkoctfile --verbose --mex --output __stk_isdominated_mex__.mex stk_isdominated_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_dist_pairwise.c -o /tmp/oct-KnO9D4.o /usr/bin/mkoctfile --verbose --mex --output __stk_mindist_mex__.mex stk_mindist_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG get_column_number.c -o /tmp/oct-A0qNnQ.o /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixx__.mex stk_dist_matrixx.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_dist_matrixy.c -o /tmp/oct-AURd3e.o /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixx__.mex stk_gpquadform_matrixx.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_filldist_discr_mex.c -o /tmp/oct-BJBEvv.o /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_pairwise__.mex stk_gpquadform_pairwise.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_gpquadform_matrixy.c -o /tmp/oct-VfICcd.o /usr/bin/mkoctfile --verbose --mex --output __stk_paretofind_mex__.mex stk_paretofind_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_isdominated_mex.c -o /tmp/oct-fooOS7.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_mindist_mex.c -o /tmp/oct-uRVWfl.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_dist_matrixx.c -o /tmp/oct-Aw8BWJ.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_gpquadform_matrixx.c -o /tmp/oct-JuQvw9.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_gpquadform_pairwise.c -o /tmp/oct-6bJSlA.o /usr/bin/mkoctfile --verbose --mex --output __stk_sampling_vdc_rr2__.mex stk_sampling_vdc_rr2.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_paretofind_mex.c -o /tmp/oct-abSEj3.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_sampling_vdc_rr2.c -o /tmp/oct-xa80AE.o g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_dist_matrixx__.mex /tmp/oct-Aw8BWJ.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_dist_pairwise__.mex /tmp/oct-KnO9D4.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_dist_matrixy__.mex /tmp/oct-AURd3e.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_gpquadform_pairwise__.mex /tmp/oct-6bJSlA.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_gpquadform_matrixx__.mex /tmp/oct-JuQvw9.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_filldist_discr_mex__.mex /tmp/oct-BJBEvv.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_gpquadform_matrixy__.mex /tmp/oct-VfICcd.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_mindist_mex__.mex /tmp/oct-uRVWfl.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro /usr/bin/mkoctfile --verbose --mex --output __stk_sampling_sobol_mex__.mex stk_sampling_sobol_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_sampling_sobol_mex.c -o /tmp/oct-6Ost3D.o /usr/bin/mkoctfile --verbose --mex --output __stk_distrib_bivnorm0_cdf__.mex stk_distrib_bivnorm0_cdf.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_distrib_bivnorm0_cdf.c -o /tmp/oct-zG2zTm.o g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __get_column_number__.mex /tmp/oct-A0qNnQ.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro /usr/bin/mkoctfile --verbose --mex --output __stk_dominatedhv_mex__.mex stk_dominatedhv_mex.c wfg.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG stk_dominatedhv_mex.c -o /tmp/oct-oQ2NNo.o g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_isdominated_mex__.mex /tmp/oct-fooOS7.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_sampling_vdc_rr2__.mex /tmp/oct-xa80AE.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_paretofind_mex__.mex /tmp/oct-abSEj3.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_distrib_bivnorm0_cdf__.mex /tmp/oct-zG2zTm.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_sampling_sobol_mex__.mex /tmp/oct-6Ost3D.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I. -DMEX_DEBUG wfg.c -o /tmp/oct-WBO9Oy.o g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -o __stk_dominatedhv_mex__.mex /tmp/oct-oQ2NNo.o /tmp/oct-WBO9Oy.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/aarch64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro make[1]: Leaving directory '/build/reproducible-path/octave-stk-2.8.1/src' copyfile /build/reproducible-path/octave-stk-2.8.1/./src/__get_column_number__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_dist_matrixx__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_dist_matrixy__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_dist_pairwise__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_distrib_bivnorm0_cdf__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_dominatedhv_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_filldist_discr_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_gpquadform_matrixx__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_gpquadform_matrixy__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_gpquadform_pairwise__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_isdominated_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_mindist_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_paretofind_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_sampling_sobol_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_sampling_vdc_rr2__.mex /build/reproducible-path/octave-stk-2.8.1/./inst/aarch64-unknown-linux-gnu-api-v58 For information about changes from previous versions of the stk package, run 'news stk'. rm: cannot remove '/build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/doc': Is a directory dh_octave_check -O--buildsystem=octave Checking package... Run the unit tests... Checking m files ... [inst/utils/stk_generate_samplepaths.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/utils/stk_generate_samplepaths.m ***** shared model, xi, zi, xt, n, nb_paths dim = 1; n = 50; nb_paths = 5; model = stk_model (@stk_materncov32_iso, dim); model.param = log ([1.0; 2.9]); xt = stk_sampling_regulargrid (n, dim, [-1.0; 1.0]); xi = [xt(1, :); xt(end, :)]; zi = [0; 0]; ***** error zsim = stk_generate_samplepaths (); ***** error zsim = stk_generate_samplepaths (model); ***** test zsim = stk_generate_samplepaths (model, xt); ***** test zsim = stk_generate_samplepaths (model, xt, nb_paths); ***** test zsim = stk_generate_samplepaths (model, xi, zi, xt); ***** test zsim = stk_generate_samplepaths (model, xi, zi, xt, nb_paths); ***** test zsim = stk_generate_samplepaths (model, xt); assert (isequal (size (zsim), [n, 1])); ***** test zsim = stk_generate_samplepaths (model, xt, nb_paths); assert (isequal (size (zsim), [n, nb_paths])); ***** test % duplicate simulation points zsim = stk_generate_samplepaths (model, [xt; xt], nb_paths); assert (isequal (size (zsim), [2 * n, nb_paths])); assert (isequal (zsim(1:n, :), zsim((n + 1):end, :))); ***** test % simulation points equal to observation points (noiseless model) % https://sourceforge.net/p/kriging/tickets/14/ zsim = stk_generate_samplepaths (model, xt, zeros (n, 1), xt); assert (isequal (zsim, zeros (n, 1))); 10 tests, 10 passed, 0 known failure, 0 skipped [inst/utils/stk_conditioning.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/utils/stk_conditioning.m ***** shared n, m, ni, xi_ind, lambda, zsim, zi n = 50; m = 5; ni = 10; xi_ind = 1:ni; lambda = 1/ni * ones (ni, n); % prediction == averaging zsim = ones (n, m); % const unconditioned samplepaths zi = zeros (ni, 1); % conditioning by zeros ***** error zsimc = stk_conditioning (); ***** error zsimc = stk_conditioning (lambda); ***** error zsimc = stk_conditioning (lambda, zi); ***** test zsimc = stk_conditioning (lambda, zi, zsim); ***** test zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); ***** test zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); assert (stk_isequal_tolabs (double (zsimc), zeros (n, m))); ***** test zi = 2 * ones (ni, 1); % conditioning by twos zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); assert (stk_isequal_tolabs (double (zsimc), 2 * ones (n, m))); ***** test DIM = 1; nt = 400; xt = stk_sampling_regulargrid (nt, DIM, [-1.0; 1.0]); NI = 6; xi_ind = [1 20 90 200 300 350]; xi = xt(xi_ind, 1); zi = (1:NI)'; % linear response ;-) % Carry out the kriging prediction at points xt model = stk_model (@stk_materncov52_iso); model.param = log ([1.0; 2.9]); [ignore_zp, lambda] = stk_predict (model, xi, [], xt); % Generate (unconditional) sample paths according to the model NB_PATHS = 10; zsim = stk_generate_samplepaths (model, xt, NB_PATHS); zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_vdc_rr2.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_vdc_rr2.m ***** error __stk_sampling_vdc_rr2__() % two inputs required ***** error __stk_sampling_vdc_rr2__(10) % two inputs required ***** error __stk_sampling_vdc_rr2__(10, 3, -1) % two inputs required ***** test n = 300; j = 25; x = __stk_sampling_vdc_rr2__(n, j); assert(isequal(size(x), [n 1])) ***** test x = __stk_sampling_vdc_rr2__(2000, 7); y = double (x(1998:2000, :)); yref = [0.849786281294525; 0.085080398941584; 0.555668634235701]; assert(stk_isequal_tolrel(y, yref, 1e-13)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_regulargrid.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_regulargrid.m ***** shared x, n, dim, box n = 9; dim = 2; box = [0, 0; 1, 1]; ***** error x = stk_sampling_regulargrid (); ***** test x = stk_sampling_regulargrid (n); ***** test x = stk_sampling_regulargrid (n, dim); ***** test x = stk_sampling_regulargrid (n, dim, box); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isa (x, 'stk_factorialdesign')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_regulargrid (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:3, n = 3^dim; x = stk_sampling_regulargrid(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end ***** test nn = [3 4 5]; for dim = 1:3, x = stk_sampling_regulargrid(nn(1:dim), dim); assert(isequal(size(x), [prod(nn(1:dim)) dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_randunif.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_randunif.m ***** shared x, n, dim, box n = 10; dim = 2; box = [0, 0; 2, 2]; ***** error x = stk_sampling_randunif (); ***** test x = stk_sampling_randunif (n); ***** test x = stk_sampling_randunif (n, dim); ***** test x = stk_sampling_randunif (n, dim, box); ***** assert (isa(x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_randunif (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randunif(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end 8 tests, 8 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_randomlhs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_randomlhs.m ***** shared x, n, dim, box n = 10; dim = 2; box = [0, 0; 1, 1]; ***** error x = stk_sampling_randomlhs (); ***** test x = stk_sampling_randomlhs (n); ***** test x = stk_sampling_randomlhs (n, dim); ***** test x = stk_sampling_randomlhs (n, dim, box); ***** assert (isa(x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_randomlhs (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randomlhs(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); assert(stk_is_lhs(x, n, dim)); end 8 tests, 8 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_olhs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_olhs.m ***** shared x, n, d, box, permut n = 5; d = 2; box = [0 0; 1, 1]; permut = 1:2; ***** error x = stk_sampling_olhs(); ***** test x = stk_sampling_olhs(n); ***** test x = stk_sampling_olhs(n, d); ***** test x = stk_sampling_olhs(n, d, box); ***** test x = stk_sampling_olhs(n, d, box, permut); ***** error x = stk_sampling_olhs(n, d, box, permut, pi); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_olhs (n, d, box); assert (isequal (x.colnames, cn)); ***** test for r = 1:5 n = 2 ^ (r + 1) + 1; d = 2 * r; x = stk_sampling_olhs (n, d); assert (isequal (size (x), [n d])); box = repmat ([-1; 1], 1, d); assert (stk_is_lhs (x, n, d, box)); x = double (x); w = x' * x; assert (stk_isequal_tolabs (w / w(1,1), eye (d))); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_nestedlhs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_nestedlhs.m ***** shared x, n, dim, box, niter, levels n = [48; 12; 4; 2]; dim = 2; box = [0, 0; 4, 4]; niter = 10; levels = [10.1; 15.2; -9.3; 2.4; 17.5]; ***** error x = stk_sampling_nestedlhs (); ***** test x = stk_sampling_nestedlhs (n); ***** test x = stk_sampling_nestedlhs (n, dim); ***** test x = stk_sampling_nestedlhs (n, dim, box); ***** test x = stk_sampling_nestedlhs (n, dim, box, niter); ***** test x = stk_sampling_nestedlhs (n, dim, box, niter, levels); ***** assert ( isequal(size(x), [sum(n), dim + 1]) ); ***** assert ( isa(x, 'stk_dataframe') ); cn = [0; cumsum(n)]; for lev = 1:length(n), y = x( (cn(lev) + 1):(cn(lev + 1)), 1:dim ); assert (isequal (size (y), [n(lev) dim])); assert (stk_is_lhs (y, n(lev), dim, box)); if lev > 1 assert ( isequal(z((end - n(lev) + 1):end, :), y) ); end z = y; end ***** assert (isequal (x.colnames{dim + 1}, 'Level')); levels = stk_dataframe(levels, {'t'}); box = stk_hrect(box, {'x1', 'x2', 'x3', 'x4'}); ***** test x = stk_sampling_nestedlhs (n, [], box, [], levels); ***** assert (isequal(x.colnames, {'x1', 'x2', 'x3', 'x4', 't'}) ); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_nesteddesign.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_nesteddesign.m ***** shared x, n, dim, box, niter, levels n = [23; 14; 5; 2]; dim = 2; box = [0, 0; 4, 4]; niter = 10; levels = [10.1; 15.2; -9.3; 2.4; 17.5]; ***** error x = stk_sampling_nesteddesign (); ***** test x = stk_sampling_nesteddesign (n); ***** test x = stk_sampling_nesteddesign (n, dim); ***** test x = stk_sampling_nesteddesign (n, dim, box); ***** test x = stk_sampling_nesteddesign (n, dim, box, niter); ***** test x = stk_sampling_nesteddesign (n, dim, box, niter, levels); ***** assert ( isequal(size(x), [sum(n), dim + 1]) ); ***** assert ( isa(x, 'stk_dataframe') ); cn = [0; cumsum(n)]; for lev = 1:length(n), y = x( (cn(lev) + 1):(cn(lev + 1)), 1:dim ); assert (isequal (size (y), [n(lev) dim])); if lev > 1 assert ( isequal(z((end - n(lev) + 1):end, :), y) ); end if lev == length(n) assert (stk_is_lhs (y, n(lev), dim, box)); end z = y; end ***** assert (isequal (x.colnames{dim + 1}, 'Level')); levels = stk_dataframe(levels, {'t'}); box = stk_hrect(box, {'x1', 'x2', 'x3', 'x4'}); ***** test x = stk_sampling_nesteddesign (n, [], box, [], levels); ***** assert (isequal(x.colnames, {'x1', 'x2', 'x3', 'x4', 't'}) ); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_maximinlhs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_maximinlhs.m ***** shared x, n, dim, box, niter n = 20; dim = 2; box = [0, 0; 1, 1]; niter = 1; ***** error x = stk_sampling_maximinlhs (); ***** test x = stk_sampling_maximinlhs (n); ***** test x = stk_sampling_maximinlhs (n, dim); ***** test x = stk_sampling_maximinlhs (n, dim, box); ***** test x = stk_sampling_maximinlhs (n, dim, box, niter); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_maximinlhs (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randomlhs (n, dim); assert (isequal (size (x), [n dim])); u = double (x); u = u(:); assert (~ any (isnan (u) | isinf (u))); assert ((min (u) >= 0) && (max (u) <= 1)); assert (stk_is_lhs (x, n, dim)); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_halton_rr2.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_halton_rr2.m ***** error stk_sampling_halton_rr2 () % nargin < 1 ***** test n = 300; d = 25; x = stk_sampling_halton_rr2 (n, d); assert (isequal (size (x), [n d])) ***** test x = stk_sampling_halton_rr2 (1000, 3); y = double (x(end, :)); yref = [0.9052734375 0.028349336991312 0.74848]; assert (stk_isequal_tolrel (y, yref, 1e-13)); ***** test dim = 2; box = stk_hrect (dim); x = stk_sampling_halton_rr2 (5, dim, box); assert (isequal (x.colnames, {})); ***** test dim = 2; cn = {'W', 'H'}; box = stk_hrect (dim, cn); x = stk_sampling_halton_rr2 (5, dim, box); assert (isequal (x.colnames, cn)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_ei_eval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampcrit_ei_eval.m ***** error EI = stk_sampcrit_ei_eval () % not enough args ***** error EI = stk_sampcrit_ei_eval (0) % not enough args ***** shared xi, zi, M_prior, xt, zp, EIref, EI1, EI2, EI3 xi = [0; 0.2; 0.7; 0.9]; zi = [1; 0.9; 0.6; 0.1]; M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); xt = stk_sampling_regulargrid (20, 1, [0; 1]); zp = stk_predict (M_prior, xi, zi, xt); EIref = stk_distrib_normal_ei (min (zi), zp.mean, sqrt (zp.var), true); ***** test % Current syntax (STK 2.4.1 and later) EI1 = stk_sampcrit_ei_eval (zp.mean, sqrt (zp.var), min (zi)); ***** assert (isequal (EI1, EIref)) 4 tests, 4 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_ehvi_eval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampcrit_ehvi_eval.m ***** shared zr, zi zr = [1 1]; zi = [0.25 0.75; 0.5 0.5; 0.75 0.25]; ***** test % no improvement (1 computation) zp_mean = [0.6 0.6]; zp_std = [0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, 0, 1e-12)); ***** test % guaranteed improvement (1 computation) zp_mean = [0 0]; zp_std = [0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, 10 * 0.25 ^ 2)); ***** test % no improvement again (2 computations) zp_mean = [0.5 0.5; 0.6 0.6]; zp_std = [0 0; 0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, [0; 0], 1e-12)); ***** test % no observation -> EHVI wrt zr zp_mean = [0.6 0.6]; zp_std = 0.01 * [1 1]; zi = []; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, (1 - 0.6)^2, 1e-12)); ***** test % no observation below zr -> EHVI wrt zr zp_mean = [0.6 0.6]; zp_std = 0.01 * [1 1]; zi = [2 2]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, (1 - 0.6)^2, 1e-12)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_akg_eval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampcrit_akg_eval.m ***** shared zc_mean, zc_std, zr_mean, zr_std, zcr_cov, AKG, nc xi = [0; 0.2; 0.7; 0.9]; zi = [1; 0.9; 0.6; 0.1] - 10; ni = 4; M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_prior.lognoisevariance = 0.678; nc = 20; xc = stk_sampling_regulargrid (nc, 1, [0; 1]); [zp, ~, ~, K] = stk_predict (M_prior, xi, zi, [xi; xc]); ir = 1:ni; ic = ni + (1:nc); zc_mean = zp.mean(ic); zc_std = sqrt (zp.var(ic)); % reference grid: current evaluation points ("KGCP") zr_mean = zp.mean(ir); zr_std = sqrt (zp.var(ir)); zcr_cov = K(ic, ir); ***** test AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std, zcr_cov); ***** assert (isequal (size (AKG), [nc 1])) ***** assert (all (AKG >= 0)) ***** error AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/sampling/stk_halfpintl.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_halfpintl.m ***** test % case #1 a = 1; b = 1; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 1) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #2: two lines, slopes not equal, already sorted a = [1; -1]; b = [0; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #3: same as #2, but not sorted a = [-1; 1]; b = [ 2; 0]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #4: two lines, equal slopes, already sorted a = [0; 0]; b = [1; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 0) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #5: same as #4, but not sorted a = [0; 0]; b = [2; 1]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 0) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #6: add a dominated line to #2 (the result does not change) a = [1; -1; 0]; b = [0; 2; 1]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #7: permutation of #6 a = [1; 0; -1]; b = [0; 1; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #8: another permutation of #6 a = [0; 1; -1]; b = [1; 0; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #9: same as #8, with some duplicated lines added a = [0; 1; 0; -1; 0; -1; 1]; b = [1; 0; 1; 2; 1; 2; 0]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_eqi/stk_sampcrit_eqi.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/@stk_sampcrit_eqi/stk_sampcrit_eqi.m ***** shared F, M, EQI M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** test F = stk_sampcrit_eqi () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | quantile_order: 0.5 | point_batch_size: 1 | current_minimum: Inf | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (F.quantile_order == 0.5) ***** assert (get (F, 'quantile_order') == 0.5) ***** assert (F.current_minimum == +inf) ***** assert (get (F, 'current_minimum') == +inf) ***** error F.toto ***** error get (F, 'toto') ***** error F.current_min = 1.234; % read-only ***** error F = set (F, 'current_min', 1.234); % read-only ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** test F = set (F, 'quantile_order', 0.8); assert (F.quantile_order == 0.8) ***** error F.quantile_order = 1.1; ***** error F.quantile_order = -0.1; ***** error F.quantile_order = [1 2]; ***** error F.current_minimum = 3.333; % read-only ***** error F.quantile_value = 2.222; % read-only ***** error EQI = feval (F, 1.0); ***** test F = stk_sampcrit_eqi (); F.model = M; assert (~ isempty (F.model)); ***** test F = stk_sampcrit_eqi (); F = set (F, 'model', M); assert (~ isempty (F.model)); ***** test F.model = []; % remove model assert (isempty (F.model)); assert (F.current_minimum == +inf); ***** test F = stk_sampcrit_eqi (M) % ending ";" omitted on purpose, to test disp F = | | model: | quantile_order: 0.5 | point_batch_size: 1 | current_minimum: 1.234 | ***** assert (isequal (F.model, M)) ***** assert (stk_isequal_tolrel (F.current_minimum, 1.234, 10 * eps)); ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EQI), [3 1])) ***** assert (all (EQI >= 0)) ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** shared F, M, EQI prior_model = stk_model (); prior_model.lognoisevariance = 0.678; M = stk_model_gpposterior (prior_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_eqi (M); ***** assert (isequal (F.model, M)) ***** assert (stk_isequal_tolrel (F.current_minimum, 2.077997, 1e-5)); ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EQI), [3 1])) ***** assert (all (EQI >= 0)) ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** shared F ***** test F = stk_sampcrit_eqi (stk_model ()); ***** assert (F.current_minimum == +inf); ***** error feval (F, 1.0); ***** shared F, M M = stk_model_gpposterior (stk_model (), [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** error F = stk_sampcrit_eqi (M, [], 0); ***** error F = stk_sampcrit_eqi (M, [], 1.5); ***** error F = stk_sampcrit_eqi (M, [], nan); ***** error F = stk_sampcrit_eqi (M, [], [10 20]); ***** test F = stk_sampcrit_eqi (M, [], 10); ***** assert (isequal (F.quantile_order, 0.5)); ***** assert (isequal (F.point_batch_size, 10)); ***** error F = stk_sampcrit_eqi (M, 0.8, 0); ***** error F = stk_sampcrit_eqi (M, 0.8, 1.5); ***** error F = stk_sampcrit_eqi (M, 0.8, nan); ***** error F = stk_sampcrit_eqi (M, 0.8, [10 20]); ***** test F = stk_sampcrit_eqi (M, 0.8, 5); ***** assert (isequal (F.quantile_order, 0.8)); ***** assert (isequal (F.point_batch_size, 5)); ***** shared F, M, EQI prior_model = stk_model (); prior_model.lognoisevariance = 0.678; M = stk_model_gpposterior (prior_model, [1 2 3]', [1.234 3 2]'); F = stk_sampcrit_eqi (M); ***** test F.point_batch_size = 10; % numeric ***** assert (isequal (F.point_batch_size, 10)) ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** test F.point_batch_size = @(x, n) 100 - n; % function handle ***** assert (isa (F.point_batch_size, 'function_handle')) ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** test F.point_batch_size = 'sin'; % char ***** assert (isa (F.point_batch_size, 'function_handle')) 63 tests, 63 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_ei/stk_sampcrit_ei.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/@stk_sampcrit_ei/stk_sampcrit_ei.m ***** shared F, M, EI M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** test F = stk_sampcrit_ei () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | current_minimum: Inf | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (F.current_minimum == +inf) ***** assert (get (F, 'current_minimum') == +inf) ***** error F.toto ***** error get (F, 'toto') ***** error F.current_min = 1.234; % read-only ***** error F = set (F, 'current_min', 1.234); % read-only ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** error EI = feval (F, 1.0); ***** test F = stk_sampcrit_ei (); F.model = M; assert (~ isempty (F.model)); ***** test F = stk_sampcrit_ei (); F = set (F, 'model', M); assert (~ isempty (F.model)); ***** test F.model = []; % remove model assert (isempty (F.model)); assert (F.current_minimum == +inf); ***** test F = stk_sampcrit_ei (M) % ending ";" omitted on purpose, to test disp F = | | model: | current_minimum: 1.234 | ***** assert (isequal (F.model, M)) ***** assert (F.current_minimum == 1.234); ***** test EI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EI), [3 1])) ***** assert (all (EI >= 0)) ***** shared F ***** test F = stk_sampcrit_ei (stk_model ()); ***** assert (F.current_minimum == +inf); ***** error feval (F, 1.0); 24 tests, 24 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_akg/stk_sampcrit_akg.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/@stk_sampcrit_akg/stk_sampcrit_akg.m ***** shared F, M, AKG M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** test F = stk_sampcrit_akg () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | reference_grid: -- (use current evaluation points) | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (isempty (F.reference_grid)) ***** assert (isempty (get (F, 'reference_grid'))) ***** error F.toto ***** error get (F, 'toto') ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** error AKG = feval (F, 1.0); ***** test F = stk_sampcrit_akg (); F.model = M; assert (isequal (F.model, M)); ***** test F = stk_sampcrit_akg (); F = set (F, 'model', M); assert (isequal (F.model, M)); assert (isequal (size (F.zr_mean), [3 1])) % n x 1 assert (isequal (size (F.zr_std), [3 1])) % n x 1 assert (isequal (size (F.zr_lambdamu), [4 3])) % (n+1) x n (constant mean) ***** test F.model = []; % remove model assert (isempty (F.model)); assert (isempty (F.zr_mean)) assert (isempty (F.zr_std)) assert (isempty (F.zr_lambdamu)) ***** test xr = [1 1.5 2 2.5 3]'; F.reference_grid = xr % ending ";" omitted on purpose, to test disp assert (isequal (F.reference_grid, xr)) assert (isempty (F.zr_mean)) assert (isempty (F.zr_std)) assert (isempty (F.zr_lambdamu)) F = | | model: -- (not instantiated) | reference_grid: <5x1 double array> | ***** test F.reference_grid = []; assert (isempty (F.reference_grid)) ***** test F = stk_sampcrit_akg (); F.model = M; assert (isequal (F.model, M)); xr = [1 1.5 2 2.5 3]'; F.reference_grid = xr % ending ";" omitted on purpose, to test disp assert (isequal (F.reference_grid, xr)) assert (isequal (size (F.zr_mean), [5 1])) % nr x 1 assert (isequal (size (F.zr_std), [5 1])) % nr x 1 assert (isequal (size (F.zr_lambdamu), [4 5])) % (n+1) x nr (constant mean) F = | | model: | reference_grid: <5x1 double array> | ***** test F.reference_grid = []; assert (isempty (F.reference_grid)) ***** test F = stk_sampcrit_akg (M) % ending ";" omitted on purpose, to test disp F = | | model: | reference_grid: -- (use current evaluation points) | ***** assert (isequal (F.model, M)) ***** test AKG = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (AKG), [3 1])) ***** assert (all (AKG >= 0)) ***** test [AKG2, zp] = feval (F, [1.0; 1.1; 1.2]); assert (isequal (AKG2, AKG)); assert (isa (zp, 'stk_dataframe') && isequal (size (zp), [3 2])) ***** shared F, xr xr = [1 1.5 2 2.5 3]'; ***** test F = stk_sampcrit_akg (stk_model ()); ***** assert (isempty (F.reference_grid)) ***** test F.reference_grid = xr; ***** assert (isequal (F.reference_grid, xr)) ***** assert (isempty (F.zr_mean)) ***** assert (isempty (F.zr_std)) ***** assert (isempty (F.zr_lambdamu)) ***** error AKG = feval (F, 1.0); ***** shared F, M, xr xr = [1 1.5 2 2.5 3]'; M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** test F = stk_sampcrit_akg (M, xr); ***** assert (isequal (F.model, M)) ***** assert (isequal (F.reference_grid, xr)) ***** assert (isequal (size (F.zr_mean), [5 1])) % nr x 1 ***** assert (isequal (size (F.zr_std), [5 1])) % nr x 1 ***** assert (isequal (size (F.zr_lambdamu), [4 5])) % (n+1) x nr (constant mean) 37 tests, 37 passed, 0 known failure, 0 skipped [inst/sampling/@stk_function/stk_function.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/@stk_function/stk_function.m ***** shared F ***** test F = stk_function () % ending ";" omitted on purpose, to test disp F = ***** error [F F]; % arrays of sampling criterion objects are not supported ***** error [F; F]; % idem ***** error get (F, 'toto'); % field does not exist ***** error y = feval (F, 1.0); % not implemented for "pure" function objects ***** error dummy = F{2}; % illegal indexing ***** error dummy = F(1.0); % feval not implemented ***** error dummy = F.toto; % field does not exist ***** error F{2} = 1.234; % illegal indexing ***** error F(5) = 1.234; % illegal indexing ***** error F.toto = 1.234; % field does not exist 11 tests, 11 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_init.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_init.m ***** test xi = (1:10)'; zi = sin (xi); model = stk_model (@stk_materncov52_iso); model.param = stk_param_init (model, xi, zi, [1; 10], false); xt = (1:9)' + 0.5; zt = sin (xt); zp = stk_predict (model, xi, zi, xt); assert (sum ((zt - zp.mean) .^ 2) < 1e-3); ***** test % check equivariance of parameter estimates f = @(x) sin (x); xi = stk_sampling_regulargrid (10, 1); zi = stk_feval (f, xi); shift = 1000; scale = 0.01; model = stk_model (@stk_materncov32_iso); p1 = stk_param_init (model, xi, zi); p2 = stk_param_init (model, xi, shift + scale .* zi); assert (stk_isequal_tolabs (p2(1), p1(1) + log (scale^2), 1e-10)) assert (stk_isequal_tolabs (p2(2), p1(2), eps)) ***** shared xi, zi, BOX, xt, zt f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); DIM = 1; % Dimension of the factor space BOX = [-1.0; 1.0]; % Factor space xi = stk_sampling_regulargrid (20, DIM, BOX); % Evaluation points zi = stk_feval (f, xi); % Evaluation results NT = 400; % Number of points in the grid xt = stk_sampling_regulargrid (NT, DIM, BOX); % Generate a regular grid zt = stk_feval (f, xt); % Values of f on the grid ***** xtest % This test is known to fail in Debian buster i386 % because of a known problem in Octave's sqp/qp functions % http://savannah.gnu.org/bugs/?38875 model = stk_model (@stk_materncov_iso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 7 column 14 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 166 column 31 ***** test model = stk_model (@stk_materncov_aniso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 5 column 14 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 166 column 31 ***** test model = stk_model (@stk_materncov32_iso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model (@stk_materncov32_aniso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model (@stk_materncov52_iso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model (@stk_materncov52_aniso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model (@stk_gausscov_iso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: matrix singular to machine precision, rcond = 1.3924e-17 warning: called from linsolve at line 113 column 7 linsolve at line 42 column 3 stk_set_righthandside at line 44 column 16 stk_make_kreq at line 35 column 6 stk_predict_ at line 112 column 10 stk_predict at line 104 column 16 __test__ at line 6 column 5 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 166 column 31 ***** test model = stk_model (@stk_gausscov_aniso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: matrix singular to machine precision, rcond = 1.8903e-18 warning: called from linsolve at line 113 column 7 linsolve at line 42 column 3 stk_set_righthandside at line 44 column 16 stk_make_kreq at line 35 column 6 stk_predict_ at line 112 column 10 stk_predict at line 104 column 16 __test__ at line 6 column 5 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 166 column 31 ***** test % Homoscedastic case / do_estim_lnv = true model = stk_model (@stk_materncov32_iso); [model.param, model.lognoisevariance] = ... stk_param_init (model, xi, zi, BOX, true); [model.param, model.lognoisevariance] = ... stk_param_estim (model, xi, zi); zp = stk_predict (model, xi, zi, xt); assert (model.lognoisevariance > -inf); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: This way of setting do_estim_lnv is deprecated warning: called from stk_param_init>stk_param_init_ at line 250 column 5 stk_param_init at line 87 column 18 __test__ at line 4 column 40 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 166 column 31 ***** error % Homoscedastic case / do_estim_lnv = false / model.lnv = nan model = stk_model (@stk_materncov32_iso); model.lognoisevariance = nan; % not compatible with do_estim_lnv == false [model.param, model.lognoisevariance] = ... stk_param_init (model, xi, zi, BOX, false); ***** test % Heteroscedastic case / known noise variance model = stk_model (@stk_materncov32_iso); lnv = log ((100 + rand (size (zi))) / 1e6); model.lognoisevariance = lnv; % here we say that lnv is known [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (isequal (model.lognoisevariance, lnv)); % should be untouched assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** shared model, x, z model = stk_model (@stk_materncov52_iso); n = 10; x = stk_sampling_regulargrid (n, 1, [0; 1]); z = ones (size (x)); ***** test % Constant response, noiseless model [param, lnv] = stk_param_init (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); assert (isequal (lnv, -inf)); warning: Parameter estimation is impossible with constant-response data. warning: called from stk_param_init>paraminit_ at line 351 column 5 stk_param_init>stk_param_init_ at line 323 column 14 stk_param_init at line 87 column 18 __test__ at line 3 column 15 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 166 column 31 ***** test % Constant response, noisy model model.lognoisevariance = nan; [param, lnv] = stk_param_init (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); assert (isscalar (lnv) && isfinite (lnv)); warning: Parameter estimation is impossible with constant-response data. warning: called from stk_param_init>paraminit_ at line 351 column 5 stk_param_init>stk_param_init_ at line 323 column 14 stk_param_init at line 87 column 18 __test__ at line 4 column 15 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 166 column 31 15 tests, 15 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_relik.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_relik.m ***** shared f, xi, zi, NI, model, C, dC1, dC2 f = @(x)(- (0.8 * x(:, 1) + sin (5 * x(:, 2) + 1) ... + 0.1 * sin (10 * x(:, 3)))); DIM = 3; NI = 20; box = repmat ([-1.0; 1.0], 1, DIM); xi = stk_sampling_halton_rr2 (NI, DIM, box); zi = stk_feval (f, xi); SIGMA2 = 1.0; % variance parameter NU = 4.0; % regularity parameter RHO1 = 0.4; % scale (range) parameter model = stk_model (@stk_materncov_aniso); model.param = log ([SIGMA2; NU; 1/RHO1 * ones(DIM, 1)]); ***** error [C, dC1, dC2] = stk_param_relik (); ***** error [C, dC1, dC2] = stk_param_relik (model); ***** error [C, dC1, dC2] = stk_param_relik (model, xi); ***** test [C, dC1, dC2] = stk_param_relik (model, xi, zi); ***** test TOL_REL = 0.01; assert (stk_isequal_tolrel (C, 21.6, TOL_REL)); assert (stk_isequal_tolrel (dC1, [4.387 -0.1803 0.7917 0.1392 2.580]', TOL_REL)); assert (isequal (dC2, [])); ***** shared xi, zi, model, TOL_REL xi = [-1 -.6 -.2 .2 .6 1]'; zi = [-0.11 1.30 0.23 -1.14 0.36 -0.37]'; model = stk_model (@stk_materncov_iso); model.param = log ([1.0 4.0 2.5]); model.lognoisevariance = log (0.01); TOL_REL = 0.01; ***** test % Another simple 1D check [C, dC1, dC2] = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (C, 6.327, TOL_REL)); assert (stk_isequal_tolrel (dC1, [0.268 0.0149 -0.636]', TOL_REL)); assert (stk_isequal_tolrel (dC2, -1.581e-04, TOL_REL)); ***** test % Same 1D test with simple kriging model.lm = stk_lm_null; [C, dC1, dC2] = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (C, 7.475, TOL_REL)); assert (stk_isequal_tolrel (dC1, [0.765 0.0238 -1.019]', TOL_REL)); assert (stk_isequal_tolrel (dC2, 3.0517e-03, TOL_REL)); ***** test % Check the gradient on a 2D test case f = @stk_testfun_braninhoo; DIM = 2; BOX = [[-5; 10], [0; 15]]; NI = 20; TOL_REL = 1e-2; DELTA = 1e-6; model = stk_model (@stk_materncov52_iso, DIM); model.param = [1 1]; xi = stk_sampling_halton_rr2 (NI, DIM, BOX); zi = stk_feval (f, xi); for range = [0.3 2 10] model.param(2) = - log (range); for diff = 1:2 assert (stk_test_critgrad ... (@stk_param_relik, model, xi, zi, diff, 1e-6)); end end 8 tests, 8 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_init_lnv.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_init_lnv.m ***** test f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); ni = 20; xi = (linspace (-1, 1, ni))' + 0.2 * (randn (ni, 1)); zi = stk_feval (f, xi); model = stk_model (@stk_materncov_iso); model.param = log ([1; 5/2; 1/0.4]); model.lognoisevariance = nan; lnv = stk_param_init_lnv (model, xi, zi); assert ((isscalar (lnv)) && (lnv > -30) && (lnv < 30)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_gls.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_gls.m ***** shared xi, zi, model, beta, sigma2 xi = (1:10)'; zi = sin (xi); model = stk_model (@stk_materncov52_iso); model.param = [0.0 0.0]; ***** test model.lm = stk_lm_constant (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (stk_isequal_tolabs (beta, 0.1346064, 1e-6)) ***** assert (stk_isequal_tolabs (sigma2, 0.4295288, 1e-6)) ***** test model.lm = stk_lm_affine (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (stk_isequal_tolabs (beta, [0.4728342; -0.0614960], 1e-6)) ***** assert (stk_isequal_tolabs (sigma2, 0.4559431, 1e-6)) ***** test model.lm = stk_lm_null (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (isequal (beta, zeros (0, 1))) ***** assert (stk_isequal_tolabs (sigma2, 0.3977993, 1e-6)) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_estim.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_estim.m ***** shared f, xi, zi, NI, param0, param1, model f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x)) ); DIM = 1; NI = 20; box = [-1.0; 1.0]; xi = stk_sampling_regulargrid (NI, DIM, box); SIGMA2 = 1.0; % variance parameter NU = 4.0; % regularity parameter RHO1 = 0.4; % scale (range) parameter param0 = log ([SIGMA2; NU; 1/RHO1]); model = stk_model (@stk_materncov_iso); ***** test % noiseless zi = stk_feval (f, xi); param1 = stk_param_estim (model, xi, zi, param0); assert (isequal (size (param1), size (param0))) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 4 column 9 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 198 column 31 ***** test % same thing, with empty lnv0 (ok) param2 = stk_param_estim (model, xi, zi, param0, []); assert (stk_isequal_tolrel (param2, param1, 1e-2)) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 3 column 9 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 198 column 31 ***** error % same thing, with lnv0 == NaN (not ok as a starting point) param2 = stk_param_estim (model, xi, zi, param0, nan); ***** error % same thing, with lnv0 == -inf (not ok as a starting point) param2 = stk_param_estim (model, xi, zi, param0, -inf); ***** test % same thing, with explicit value for 'criterion' param2 = stk_param_estim (model, xi, zi, param0, [], @stk_param_relik); assert (stk_isequal_tolrel (param1, param2, 1e-2)) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 3 column 9 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 198 column 31 ***** test % noiseless zi = stk_feval (f, xi); param1 = stk_param_estim (model, xi, zi, param0); param2 = stk_param_estim (model, xi, zi, param0, [], @stk_param_relik); % We cannot assume a DETERMINISTIC optimization algorithm % (for some reason, Octave's sqp is not exactly deterministic) assert (stk_isequal_tolrel (param1, param2, 1e-2)) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 4 column 9 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 198 column 31 warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 5 column 9 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 198 column 31 ***** test % noisy NOISE_STD_TRUE = 0.1; NOISE_STD_INIT = 1e-5; zi = zi + NOISE_STD_TRUE * randn(NI, 1); model.lognoisevariance = 2 * log(NOISE_STD_INIT); [param, lnv] = stk_param_estim ... (model, xi, zi, param0, model.lognoisevariance); ***** error param = stk_param_estim () ***** error param = stk_param_estim (model); ***** error param = stk_param_estim (model, xi); ***** test % Constant response model = stk_model (@stk_materncov52_iso); n = 10; x = stk_sampling_regulargrid (n, 1, [0; 1]); z = ones (size (x)); param = stk_param_estim (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); warning: Constant-response data: the output of stk_param_estim is likely to be unreliable. warning: called from stk_param_estim at line 95 column 5 __test__ at line 5 column 8 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 198 column 31 warning: Parameter estimation is impossible with constant-response data. warning: called from stk_param_init>paraminit_ at line 351 column 5 stk_param_init>stk_param_init_ at line 323 column 14 stk_param_init at line 87 column 18 stk_param_estim>provide_starting_point at line 205 column 20 stk_param_estim at line 110 column 30 __test__ at line 5 column 8 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 198 column 31 11 tests, 11 passed, 0 known failure, 0 skipped [inst/model/prior_struct/stk_ortho_func.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/prior_struct/stk_ortho_func.m ***** shared model, x, n, d n = 15; d = 4; model = stk_model (@stk_materncov_aniso, d); x = stk_sampling_randunif (n, d); model = rmfield (model, 'lm'); % Test the old .order approach ***** error P = stk_ortho_func (); ***** error P = stk_ortho_func (model); ***** test P = stk_ortho_func (model, x); ***** test model.order = -1; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 0])); ***** test model.order = 0; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1])); ***** test model.order = 1; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, d + 1])); ***** test model.order = 2; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1 + d * (d + 3) / 2])); ***** test model.order = 3; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1 + d * (11 + d * (6 + d)) / 6])); ***** error model.order = 4; P = stk_ortho_func (model, x); % model.order > 3 is not allowed 9 tests, 9 passed, 0 known failure, 0 skipped [inst/model/prior_struct/stk_model.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/prior_struct/stk_model.m ***** test model = stk_model (); ***** test model = stk_model (@stk_expcov_iso); ***** test model = stk_model (@stk_expcov_iso, 1); ***** test model = stk_model (@stk_expcov_iso, 3); ***** test model = stk_model (@stk_expcov_aniso); ***** test model = stk_model (@stk_expcov_aniso, 1); ***** test model = stk_model (@stk_expcov_aniso, 3); ***** test model = stk_model (@stk_materncov_iso); ***** test model = stk_model (@stk_materncov_iso, 1); ***** test model = stk_model (@stk_materncov_iso, 3); ***** test model = stk_model (@stk_materncov_aniso); ***** test model = stk_model (@stk_materncov_aniso, 1); ***** test model = stk_model (@stk_materncov_aniso, 3); ***** test model = stk_model (@stk_materncov32_iso); ***** test model = stk_model (@stk_materncov32_iso, 1); ***** test model = stk_model (@stk_materncov32_iso, 3); ***** test model = stk_model (@stk_materncov32_aniso); ***** test model = stk_model (@stk_materncov32_aniso, 1); ***** test model = stk_model (@stk_materncov32_aniso, 3); ***** test model = stk_model (@stk_materncov52_iso); ***** test model = stk_model (@stk_materncov52_iso, 1); ***** test model = stk_model (@stk_materncov52_iso, 3); ***** test model = stk_model (@stk_materncov52_aniso); ***** test model = stk_model (@stk_materncov52_aniso, 1); ***** test model = stk_model (@stk_materncov52_aniso, 3); ***** test model = stk_model (@stk_gausscov_iso); ***** test model = stk_model (@stk_gausscov_iso, 1); ***** test model = stk_model (@stk_gausscov_iso, 3); ***** test model = stk_model (@stk_gausscov_aniso); ***** test model = stk_model (@stk_gausscov_aniso, 1); ***** test model = stk_model (@stk_gausscov_aniso, 3); ***** test model = stk_model (@stk_sphcov_iso); ***** test model = stk_model (@stk_sphcov_iso, 1); ***** test model = stk_model (@stk_sphcov_iso, 3); ***** test model = stk_model (@stk_sphcov_aniso); ***** test model = stk_model (@stk_sphcov_aniso, 1); ***** test model = stk_model (@stk_sphcov_aniso, 3); 37 tests, 37 passed, 0 known failure, 0 skipped [inst/model/prior_struct/stk_covmat_noise.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/prior_struct/stk_covmat_noise.m ***** shared model, model2, x1, x2, n1, n2, d, Ka, Kb, Kc, Pa, Pb, Pc, P1, P2, P3, K1, K2, K3 n1 = 20; n2 = 10; d = 4; model = stk_model (@stk_materncov52_aniso, d); model.lm = stk_lm_affine; model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); model2 = model; model2.lognoisevariance = log(0.01); x1 = stk_sampling_randunif (n1, d); x2 = stk_sampling_randunif (n2, d); ***** error [KK, PP] = stk_covmat_noise (); ***** error [KK, PP] = stk_covmat_noise (model); ***** test [Ka, Pa] = stk_covmat_noise (model, x1); % (1) ***** test [K1, P1] = stk_covmat_noise (model, x1, []); ***** test [K2, P2] = stk_covmat_noise (model, x1, [], -1); ***** test [K3, P3] = stk_covmat_noise (model, x1, [], -1, false); ***** assert (isequal (size (Ka), [n1 n1])); ***** assert (isequal (size (Pa), [n1 0])); ***** assert (isequal (P1, Pa) && (isequal (K1, Ka))) ***** assert (isequal (P2, Pa) && (isequal (K2, Ka))) ***** assert (isequal (P3, Pa) && (isequal (K3, Ka))) ***** test [Kb, Pb] = stk_covmat_noise (model, x1, x1); % (2) ***** test [K1, P1] = stk_covmat_noise (model, x1, x1, -1); ***** test [K2, P2] = stk_covmat_noise (model, x1, x1, -1, false); ***** assert (isequal (size (Kb), [n1 n1])); ***** assert (isequal (size (Pb), [n1 0])); ***** assert (isequal (P1, Pb) && (isequal (K1, Kb))) ***** assert (isequal (P2, Pb) && (isequal (K2, Kb))) ***** test [Kc, Pc] = stk_covmat_noise (model, x1, x2); % (3) ***** test [K1, P1] = stk_covmat_noise (model, x1, x2, -1); ***** test [K2, P2] = stk_covmat_noise (model, x1, x2, -1, false); ***** assert (isequal (size (Kc), [n1 n2])); ***** assert (isequal (size (Pc), [n1 0])); ***** assert (isequal (P1, Pc) && (isequal (K1, Kc))) ***** assert (isequal (P2, Pc) && (isequal (K2, Kc))) ***** assert (isequal (Kb, Ka)); ***** test [Ka, Pa] = stk_covmat_noise (model2, x1); % (1') ***** test [Kb, Pb] = stk_covmat_noise (model2, x1, x1); % (2') ***** error assert (isequal (Kb, Ka)); ***** assert (isequal (Pa, Pb)); ***** assert (isequal (Pa, Pc)); 31 tests, 31 passed, 0 known failure, 0 skipped [inst/model/noise/@stk_gaussiannoise_het0/set.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/noise/@stk_gaussiannoise_het0/set.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/stk_predict_leaveoneout.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/stk_predict_leaveoneout.m ***** test % Check virtual Leave-One-Out formula n = 20; d = 1; x_obs = stk_sampling_regulargrid (n, d, [0; 2*pi]); z_obs = stk_feval (@sin, x_obs); lm_list = {stk_lm_null, stk_lm_constant, stk_lm_affine}; for j = 0:2 for k = 1:(length (lm_list)) model = stk_model (@stk_materncov32_iso, d); model.lm = lm_list{k}; model.param = log ([1; 5]); switch j % test various scenarios for lognoisevariance case 0 model.lognoisevariance = -inf; case 1 model.lognoisevariance = 0; case 2 model.lognoisevariance = (1 + rand (n, 1)) * 1e-3; end M_post = stk_model_gpposterior (model, x_obs, z_obs); [loo_pred, loo_res] = stk_predict_leaveoneout (M_post); [direct_pred, direct_res] = stk_predict_leaveoneout_direct (M_post); assert (stk_isequal_tolrel (loo_pred, direct_pred)); assert (stk_isequal_tolrel (loo_res, direct_res)); end end 1 test, 1 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/stk_predict_.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/stk_predict_.m ***** shared n, m, M_post, M_prior, x0, x_obs, z_obs, x_prd, y_prd, idx_obs, idx_prd n = 10; % number of observations m = n + 1; % number of predictions d = 1; % dimension of the input space x0 = (linspace (0, pi, n + m))'; idx_obs = (2:2:(n+m-1))'; idx_prd = (1:2:(n+m))'; x_obs = x0(idx_obs); z_obs = sin (x_obs); x_prd = x0(idx_prd); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error y_prd = stk_predict (M_post); ***** test y_prd = stk_predict (M_post, x_prd); ***** error y_prd = stk_predict (M_post, [x_prd x_prd]); ***** test % nargout = 2 [y_prd1, lambda] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); ***** test % nargout = 3 [y_prd1, lambda, mu] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging ***** test % nargout = 4 [y_prd1, lambda, mu, K] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging assert (isequal (size (K), [m m])); ***** test % nargout = 2, compute only variances M_post1 = stk_model_gpposterior (M_prior, x_obs, []); [y_prd_nan, lambda] = stk_predict (M_post1, x_prd); assert (isequal (size (lambda), [n m])); assert (all (isnan (y_prd_nan.mean))); ***** test % discrete model (prediction indices provided) M_prior1 = stk_model (@stk_discretecov, M_prior, x0); M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); y_prd1 = stk_predict (M_post1, idx_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); ***** test % discrete model (prediction indices *not* provided) M_prior1 = stk_model (@stk_discretecov, M_prior, x0); M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); y_prd1 = stk_predict (M_post1, []); % predict them all! assert (stk_isequal_tolrel (y_prd, y_prd1(idx_prd, :))); 9 tests, 9 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/stk_model_update.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/stk_model_update.m ***** shared x_obs, z_obs, ref, M_prior, x_new, z_new, lnv_new [x_obs, z_obs, ref] = stk_dataset_twobumps ('noisy2'); M_prior = stk_model (@stk_materncov52_iso); M_prior.param = [-0.15; 0.38]; M_prior.lognoisevariance = 2 * log (ref.noise_std); x_new = [-0.79; -0.79]; z_new = [-0.69; -0.85]; lnv_new = ref.noise_std_func (x_new); ***** test % heteroscedastic M_prior.lognoisevariance = 2 * log (ref.noise_std); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new, lnv_new); ***** error % using lnv_new / homoscedastic M_prior.lognoisevariance = 0; M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK ***** error % using lnv_new / noiseless M_prior.lognoisevariance = -inf; M_post = stk_model_gpposterior (M_prior, x_obs, z_obs) M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK ***** error % not using lnv_new / heteroscedastic M_prior.lognoisevariance = 2 * log (ref.noise_std); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/stk_model_gpposterior.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/stk_model_gpposterior.m ***** test stk_test_class ('stk_model_gpposterior') ***** shared M_prior, x_obs, z_obs x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); ***** test M_post = stk_model_gpposterior (); ***** test M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs]); ***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs], 3.441); ***** test % hidden feature kreq = stk_kreq_qr (M_prior, x_obs); M_post = stk_model_gpposterior (M_prior, {x_obs, kreq}, z_obs); ***** test % NaNs in prior_model.param DIM = 1; M = stk_model (@stk_materncov52_aniso, DIM); M.param = nan (2, 1); % this is currently the default x = stk_sampling_regulargrid (20, DIM, [0; 1]); y = sin (double (x)); zp = stk_predict (M, x, y, x); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/set.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/set.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/get.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/get.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect_scientific.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/text/stk_sprintf_colvect_scientific.m ***** shared x, s x = [1.2; -34567]; ***** test s = stk_sprintf_colvect_scientific(x, 1); ***** assert (isequal(s, ['#'; '#'])) ***** test s = stk_sprintf_colvect_scientific(x, 3); ***** assert (isequal(s, ['###'; '###'])) ***** test s = stk_sprintf_colvect_scientific(x, 5); ***** assert (isequal(s, ['#####'; '#####'])) ***** test s = stk_sprintf_colvect_scientific(x, 6); ***** assert (isequal(s, [' 1e+00'; '-3e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 7); ***** assert (isequal(s, [' 1e+00'; '-3e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 8); ***** assert (isequal(s, [' 1.2e+00'; '-3.5e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 9); ***** assert (isequal(s, [' 1.20e+00'; '-3.46e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 10); ***** assert (isequal(s, [' 1.200e+00'; '-3.457e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 11); ***** assert (isequal(s, [' 1.2000e+00'; '-3.4567e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 12); ***** assert (isequal(s, [' 1.2000e+00'; '-3.4567e+04'])) ***** shared x, s x = [0.9; 0.91; 0.99; 0.999]; ***** test s = stk_sprintf_colvect_scientific (x, 4); ***** assert (isequal(s, ['####'; '####'; '####'; '####'])) ***** test s = stk_sprintf_colvect_scientific (x, 5); ***** assert (isequal(s, ['9e-01'; '9e-01'; '1e+00'; '1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 6); ***** assert (isequal(s, ['9e-01'; '9e-01'; '1e+00'; '1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 7); ***** assert (isequal(s, ['9.0e-01'; '9.1e-01'; '9.9e-01'; '1.0e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 8); ***** assert (isequal(s, ['9.00e-01'; '9.10e-01'; '9.90e-01'; '9.99e-01'])) ***** shared x, s x = [0.9; -0.91; 0.99; 0.999]; ***** test s = stk_sprintf_colvect_scientific (x, 4); ***** assert (isequal(s, ['####'; '####'; '####'; '####'])) ***** test s = stk_sprintf_colvect_scientific (x, 5); ***** assert (isequal(s, ['#####'; '#####'; '#####'; '#####'])) ***** test s = stk_sprintf_colvect_scientific (x, 6); ***** assert (isequal(s, [' 9e-01'; '-9e-01'; ' 1e+00'; ' 1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 7); ***** assert (isequal(s, [' 9e-01'; '-9e-01'; ' 1e+00'; ' 1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 8); ***** assert (isequal(s, [' 9.0e-01'; '-9.1e-01'; ' 9.9e-01'; ' 1.0e+00'])) ***** test x = [1e6; -1e10; 1e-221]; s = stk_sprintf_colvect_scientific(x, 10); assert(isequal(s, [' 1e+006'; '-1e+010'; ' 1e-221'])); 41 tests, 41 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect_fixedpoint.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/text/stk_sprintf_colvect_fixedpoint.m ***** shared x, s x = [1.2; 3.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['1'; '3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, ['1'; '3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, ['1.2'; '3.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, ['1.20'; '3.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, ['1.20'; '3.48'])) ***** shared x, s x = [1.2; -3.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['#'; '#'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, [' 1'; '-3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, [' 1'; '-3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, [' 1.2'; '-3.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, [' 1.20'; '-3.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 6); ***** assert (isequal(s, [' 1.20'; '-3.48'])) ***** shared x, s x = [0.2; 0.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['0'; '0'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, ['0'; '0'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, ['0.2'; '0.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, ['0.20'; '0.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, ['0.20'; '0.48'])) 32 tests, 32 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/text/stk_sprintf_colvect.m ***** shared s ***** test s = stk_sprintf_colvect ([1 1e1], 6); ***** assert (isequal (s, [' 1'; '10'])) ***** test s = stk_sprintf_colvect ([1 1e3], 6); ***** assert (isequal (s, [' 1'; '1000'])) ***** test s = stk_sprintf_colvect ([1 1e5], 6); ***** assert (isequal (s, [' 1'; '100000'])) ***** test s = stk_sprintf_colvect ([1 1e6], 6); ***** assert (isequal (s, ['1e+00'; '1e+06'])) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/misc/text/stk_disp_progress.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/text/stk_disp_progress.m ***** error stk_disp_progress ('toto ', 0, 1); ***** test stk_disp_progress ('toto ', 1, 1); warning: implicit conversion from numeric to char warning: called from stk_disp_progress at line 53 column 1 __test__ at line 2 column 3 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 310 column 31 toto ***** error stk_disp_progress ('toto ', 2, 1); ***** test stk_disp_progress ('toto ', 1, 2); stk_disp_progress ('toto ', 2, 2); warning: implicit conversion from numeric to char warning: called from stk_disp_progress at line 53 column 1 __test__ at line 3 column 2 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 310 column 31 toto toto 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/test/stk_test.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/test/stk_test.m ***** assert(isempty([])) % support for test assert shorthand ***** assert((1 + 1) == 2) ***** test a=1; ***** test assert(~exist('a')); ***** shared a % create a shared variable ***** test a = 3; % assign to a shared variable ***** test assert(a == 3); % variable should equal 3 in this second 'test' block ***** shared b, c % replace shared variables {'a'} --> {'b', 'c'} ***** test assert(~exist('a')); % a no longer exists ***** test assert(isempty(b)); % variables start off empty ***** shared a % recreate a shared variable that had been deleted ***** test assert (isempty(a)); % it is empty, even though it was equal to 3 before ***** shared a, b, c % creates three shared variables a = 1; b = 2; c = 3; % give values to all variables, in the same block ***** assert(isequal([a, b, c], [1, 2, 3])); % test all of them together ***** test c=6; % update a value ***** test % show that the update sticks between blocks assert(isequal([a, b, c], [1, 2, 6])); ***** shared % clear all shared variables ***** assert(~exist('a')) % show that they are cleared ***** error test % not enough input arguments ***** error test(1, 2, 3, 4) % too many input args ***** error garbage % usage on nonexistent function should be ***** error stt_test('test', 'bogus'); % undefined function error ***** error stk_test('test', 'bogus'); % error raised by stk_test itself ***** error stk_test(); ***** error stk_test('disp', 'verbose', [], 'extra arg !!!'); ***** error stk_test([]) ***** error stk_test(0.0) ***** error stk_test('stk_mindist', 0.0) ***** error stk_test('stk_mindist', 'dudule') 24 tests, 24 passed, 0 known failure, 0 skipped [inst/misc/test/stk_isequal_tolrel.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/test/stk_isequal_tolrel.m ***** shared r1, r2, r3, a, b, tolrel a = 1.01; b = 1.02; tolrel = 0.1; ***** error rr = stk_isequal_tolrel(); ***** error rr = stk_isequal_tolrel(a); ***** test r1 = stk_isequal_tolrel(a, b); ***** test r2 = stk_isequal_tolrel(a, b, tolrel); ***** test r3 = stk_isequal_tolrel(a, [b b]); ***** test assert (isequal (r1, false)); ***** test assert (isequal (r2, true)); ***** test assert (isequal (r3, false)); ***** test a = struct('u', []); b = struct('v', []); assert(~ stk_isequal_tolrel(a, b)) ***** test a = struct('u', 1.01); b = struct('u', 1.02); assert(stk_isequal_tolrel(a, b, tolrel)) 10 tests, 10 passed, 0 known failure, 0 skipped [inst/misc/test/stk_isequal_tolabs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/test/stk_isequal_tolabs.m ***** shared r1, r2, a, b, tolabs a = 1.01; b = 1.02; tolabs = 0.1; ***** error rr = stk_isequal_tolabs(); ***** error rr = stk_isequal_tolabs(a); ***** test r1 = stk_isequal_tolabs(a, b); ***** test r2 = stk_isequal_tolabs(a, b, tolabs); ***** test assert(~r1); ***** test assert(r2); ***** test a = struct('u', []); b = struct('v', []); assert(~ stk_isequal_tolabs(a, b)) ***** test a = struct('u', 1.01); b = struct('u', 1.02); assert(stk_isequal_tolabs(a, b, tolabs)) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_paretofind.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/pareto/stk_paretofind.m ***** shared x, ndpos, drank x = [ ... 0 2; ... 2 2; ... ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, 1)); ***** assert (isequal (drank, [0; 1])); ***** shared x, ndpos, drank x = [ ... 3 2; ... 2 2; ... ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, 2)); ***** assert (isequal (drank, [1; 0])); ***** shared x, ndpos, drank x = [ ... 1 0; ... 2 0; ... 0 2; ... 2 2; ... -1 3 ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, [5; 3; 1])); ***** assert (isequal (drank, [0; 3; 0; 2; 0])); ***** shared x, ndpos, drank x = [ ... 1 0; ... 2 0; ... 0 2; ... 2 2; ... -1 3; ... -1 4; ... 2 2 ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, [5; 3; 1])); ***** assert (isequal (drank, [0; 3; 0; 2; 0; 1; 2])); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_isdominated.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/pareto/stk_isdominated.m ***** test A = [1 3 2]; B = [0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 1); ***** test A = [1 3 2]; B = [0 0 3]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 0); assert (dpos == 0); ***** test A = [1 3 2]; B = [0 0 0; 0 0 3]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 1); ***** test A = [1 3 2]; B = [0 0 3; 0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 2); ***** test A = [1 3 2; 1 0 1; -1 0 0; 1 3 2]; B = [1 0 0; 0 0 3; 0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isequal (isdom, logical ([1; 1; 0; 1]))); assert (isequal (dpos, [3; 3; 0; 3])); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_dominatedhv.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/pareto/stk_dominatedhv.m ***** error hv = stk_dominatedhv (); ***** error hv = stk_dominatedhv (-y, 'incorrect ref type'); ***** error hv = stk_dominatedhv (-y, [0 0]); ***** error hv = stk_dominatedhv (-y, [0 0 0 0 0], 0, 'too many input args'); ***** shared y, hv0 % Example from README.TXT in WFG 1.10 y = [ ... 0.598 0.737 0.131 0.916 6.745; ... 0.263 0.740 0.449 0.753 6.964; ... 0.109 8.483 0.199 0.302 8.872 ]; hv0 = 1.1452351120; ***** test hv = stk_dominatedhv (-y); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test yy = stk_dataframe (- y); % Check that @stk_dataframe inputs are accepted hv = stk_dominatedhv (yy); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (-y, [], 0); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (-y, [0 0 0 0 0]); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (1 - y, [1 1 1 1 1]); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test r = stk_dominatedhv (-y, [], 1); hv = sum (r.sign .* prod (r.xmax - r.xmin, 2)); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** shared y1, y2, y0, S, S1 y0 = [1.00 1.00]; % Reference point y1 = [1.50 1.50]; % Above the reference point y2 = [0.50 0.50]; % Below the reference point ***** assert (isequal (0.00, stk_dominatedhv (y1, y0))); ***** assert (isequal (0.25, stk_dominatedhv (y2, y0))); ***** assert (isequal (0.25, stk_dominatedhv ([y1; y2], y0))); ***** assert (isequal (0.25, stk_dominatedhv ([y2; y1; y2], y0))); ***** test S = stk_dominatedhv (y1, y0, 1); % empty decomposition ***** assert (isequal (size (S.xmin, 1), 0)); ***** test S = stk_dominatedhv (y2, y0, 1); % trivial decomposition ***** assert (isequal (S.sign, 1)); ***** assert (isequal (S.xmin, y2)); ***** assert (isequal (S.xmax, y0)); ***** test S1 = stk_dominatedhv ([y2; y0], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test S1 = stk_dominatedhv ([y2; y1], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test S1 = stk_dominatedhv ([y2; y2], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test for d = 1:10, y = - 0.5 * ones (1, d); hv = stk_dominatedhv (y); assert (isequal (stk_dominatedhv (y), 0.5 ^ d)); end ***** test for d = 1:10, y = - 0.5 * ones (1, d); r = stk_dominatedhv (y, [], 1); hv = sum (r.sign .* prod (r.xmax - r.xmin, 2)); assert (isequal (stk_dominatedhv (y), 0.5 ^ d)); end ***** shared y, y_ref, dv, hv0 y1 = [0.25 0.75]; y2 = [0.50 0.50]; y3 = [0.75 0.25]; y_ref = [1 1]; y = {[], y1, y2, y3; [y1; y2], [y1; y3], [y2; y3], [y1; y2; y3]}; dv = 0.25 ^ 2; hv0 = [0 3 4 3; 5 5 5 6] * dv; ***** test hv1 = stk_dominatedhv (y, y_ref); assert (isequal (hv0, hv1)); ***** test r = stk_dominatedhv (y, y_ref, 1); % Check the first decomposition, which should be empty assert (isempty (r(1).sign)); assert (isempty (r(1).xmin)); assert (isempty (r(1).xmax)); % Check the other decompositions for i = 2:6, hv2 = sum (r(i).sign .* prod (r(i).xmax - r(i).xmin, 2)); assert (isequal (hv0(i), hv2)); end ***** test y = (0.3:0.1:0.8)'; hv0 = 0.7; hv1 = stk_dominatedhv (y, 1); r = stk_dominatedhv (y, 1, true); hv2 = sum (r.sign .* prod (r.xmax - r.xmin, 2)); ***** test % four non-dominated points (hypervolume) zr = [1 1]; zi = [0.2 0.8; 0.4 0.6; 0.6 0.4; 0.8 0.2] P = perms (1:4); for i = 1:24 HV = stk_dominatedhv (zi(P(i, :), :), zr, 0); assert (stk_isequal_tolrel (HV, 0.4, 1e-15)); end zi = 0.2000 0.8000 0.4000 0.6000 0.6000 0.4000 0.8000 0.2000 ***** test % four non-dominated points (decomposition) zr = [1 1]; zi = [0.2 0.8; 0.4 0.6; 0.6 0.4; 0.8 0.2] P = perms (1:4); for i = 1:24 S = stk_dominatedhv (zi(P(i, :), :), zr, 1); HV = sum (S.sign .* prod (S.xmax - S.xmin, 2)); assert (stk_isequal_tolrel (HV, 0.4, 1e-15)); end zi = 0.2000 0.8000 0.4000 0.6000 0.6000 0.4000 0.8000 0.2000 ***** test % a case with 8 points and 5 objectives % http://sourceforge.net/p/kriging/tickets/33 yr = [1.03 0.91 0.96 1.99 16.2]; y = [ ... 0.8180 0.5600 0.1264 1.0755 1.2462; ... 0.8861 0.6928 0.2994 0.7228 0.9848; ... 0.9021 0.8829 0.6060 0.1642 0.4282; ... 0.9116 0.3097 0.8601 0.0468 0.2813; ... 0.9306 0.1429 0.6688 0.1462 1.3661; ... 0.9604 0.3406 0.4046 0.7239 1.8741; ... 0.9648 0.7764 0.5199 0.4098 1.3436; ... 0.9891 0.4518 0.7956 0.1164 1.2025]; hv1 = stk_dominatedhv (y, yr, 0); S = stk_dominatedhv (y, yr, 1); hv2 = sum (S.sign .* prod (S.xmax - S.xmin, 2)); assert (isequal (size (S.sign), [87 1])); assert (isequal (size (S.xmin), [87 5])); assert (isequal (size (S.xmax), [87 5])); assert (stk_isequal_tolrel (hv1, 1.538677420906463, 2 * eps)); assert (stk_isequal_tolrel (hv1, hv2, eps)); ***** test % with random data NREP = 5; for p = 1:5 for n = 1:10 for i = 1:NREP % Draw random data y = rand (n, p); y = - y ./ (norm (y)); % Compute hypervolume directly hv1 = stk_dominatedhv (y, [], 0); % Compute decomposition, then hypervolume R = stk_dominatedhv (y, [], 1); hv2 = sum (R.sign .* prod (R.xmax - R.xmin, 2)); % Compare results assert (stk_isequal_tolabs (hv1, hv2, eps)); end end end 35 tests, 35 passed, 0 known failure, 0 skipped [inst/misc/parallel/@stk_parallel_engine_none/stk_parallel_engine_none.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/parallel/@stk_parallel_engine_none/stk_parallel_engine_none.m ***** test stk_test_class ('stk_parallel_engine_none') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_optim_testmin_unc.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/stk_optim_testmin_unc.m ***** shared algo algo = stk_options_get ('stk_param_estim', 'minimize_unc'); ***** error b = stk_optim_testmin_unc (); ***** assert (stk_optim_testmin_unc (algo)); ***** assert (~ stk_optim_testmin_unc ('dudule')); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_optim_testmin_box.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/stk_optim_testmin_box.m ***** shared algo algo = stk_options_get ('stk_param_estim', 'minimize_box'); ***** error b = stk_optim_testmin_box (); ***** assert (stk_optim_testmin_box (algo)); ***** assert (~ stk_optim_testmin_box ('dudule')); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_minimize_unconstrained.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/stk_minimize_unconstrained.m ***** test % Call fminsearch using function name if stk_optim_isavailable ('fminsearch') assert (stk_optim_testmin_unc ('fminsearch')); end ***** test % Call fminsearch directly, using algorithm object if stk_optim_isavailable ('fminsearch') algo = stk_optim_fminsearch ('TolX', 1e-12, 'TolFun', 1e-12); assert (stk_optim_testmin_unc (algo)); end ***** test % Call sqp using function name if stk_optim_isavailable ('octavesqp') assert (stk_optim_testmin_unc ('octavesqp')); end ***** test % Call sqp directly, using algorithm object if stk_optim_isavailable ('octavesqp') algo = stk_optim_octavesqp (); assert (stk_optim_testmin_unc (algo)); end ***** error assert (stk_optim_testmin_unc ('InexistentOptimizer')); ***** error assert (stk_optim_testmin_unc (100)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_minimize_boxconstrained.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/stk_minimize_boxconstrained.m ***** test % Call fmincon using function name if stk_optim_isavailable ('fmincon') assert (stk_optim_testmin_box ('fmincon')); end ***** test % Call fmincon directly, using algorithm object if stk_optim_isavailable ('fmincon') algo = stk_optim_fmincon ('TolX', 1e-12, 'TolFun', 1e-12); assert (stk_optim_testmin_box (algo)); end ***** test % Call sqp using function name if stk_optim_isavailable ('octavesqp') assert (stk_optim_testmin_box ('octavesqp')); end ***** test % Call sqp directly, using algorithm object if stk_optim_isavailable ('octavesqp') algo = stk_optim_octavesqp (); assert (stk_optim_testmin_box (algo)); end ***** error assert (stk_optim_testmin_box ('InexistentOptimizer')); ***** error assert (stk_optim_testmin_box (100)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_optimizer_/stk_optim_optimizer_.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/@stk_optim_optimizer_/stk_optim_optimizer_.m ***** test stk_test_class ('stk_optim_optimizer_') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_octavesqp/stk_optim_octavesqp.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/@stk_optim_octavesqp/stk_optim_octavesqp.m ***** test stk_test_class ('stk_optim_octavesqp') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_fminsearch/stk_optim_fminsearch.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/@stk_optim_fminsearch/stk_optim_fminsearch.m ***** test stk_test_class ('stk_optim_fminsearch') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_fmincon/stk_optim_fmincon.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/@stk_optim_fmincon/stk_optim_fmincon.m ***** test stk_test_class ('stk_optim_fmincon') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/error/stk_error.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/error/stk_error.m ***** shared errmsg, mnemonic, badstack errmsg = 'Go ahead, make my day.'; mnemonic = 'ClintEastwood'; badstack = 0; % not a valid stack structure ***** error stk_error(errmsg, mnemonic); ***** error stk_error (errmsg, mnemonic, badstack); ***** error id=STK:stk_error:InvalidArgument stk_error (errmsg, mnemonic, badstack); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_pdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_student_pdf.m ***** assert (stk_isequal_tolrel ( ... stk_distrib_student_pdf ([1; 3], [1; 2], [0 1], [1 10]), ... [0.50 / pi ... % tpdf ((1 - 1) / 10, 1) 0.10 / pi; ... % tpdf ((1 - 1) / 10, 1) / 10 1 / (11 * sqrt(11)) ... % tpdf ((3 - 0) / 1, 2) / 1 3.4320590294804165e-02 ... % tpdf ((3 - 1) / 10, 2) / 10 ], eps)); ***** assert (isequal (stk_distrib_student_pdf ( inf, 1.0), 0.0)); ***** assert (isequal (stk_distrib_student_pdf (-inf, 1.0), 0.0)); ***** assert (isnan (stk_distrib_student_pdf ( nan, 1.0))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_ei.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_student_ei.m ***** assert (stk_isequal_tolrel (stk_distrib_student_ei (0, 2), 1 / sqrt (2), eps)) ***** test % Decreasing as a function of z ei = stk_distrib_student_ei (linspace (-10, 10, 200), 3.33); assert (all (diff (ei) < 0)) ***** shared M, mu, sigma, ei, nu M = randn (1, 10); mu = randn (5, 1); sigma = 1 + rand (1, 1, 7); nu = 2; ei = stk_distrib_student_ei (M, nu, mu, sigma); ***** assert (isequal (size (ei), [5, 10, 7])) ***** assert (all (ei(:) >= 0)) ***** assert (isequal (ei, stk_distrib_student_ei (M, nu, mu, sigma, false))); ***** assert (isequal (ei, stk_distrib_student_ei (-M, nu, -mu, sigma, true))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_cdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_student_cdf.m ***** assert (stk_isequal_tolrel ( ... stk_distrib_student_cdf ([-1; 0; 1], [1 2], 0, [1 10]), ... [0.25, ... % tcdf ((-1 - 0)/1, 1) 4.6473271920707004e-01; ... % tcdf ((-1 - 0)/10, 2) 0.50, ... % tcdf (( 0 - 0)/1, 1) 0.50; ... % tcdf (( 0 - 0)/10, 2) 0.75, ... % tcdf (( 1 - 0)/1, 1) 5.3526728079292996e-01 ... % tcdf (( 1 - 0)/10, 2) ], 4 * eps)) ***** test [p, q] = stk_distrib_student_cdf (1e10, 2); assert (isequal (p, 1.0)); assert (stk_isequal_tolrel (q, 4.999999999999999999925e-21, 10 * eps)); ***** assert (isequal (stk_distrib_student_cdf (0.0, 1), 0.5)); ***** assert (isequal (stk_distrib_student_cdf (inf, 1), 1.0)); ***** assert (isequal (stk_distrib_student_cdf (-inf, 1), 0.0)); ***** assert (isnan (stk_distrib_student_cdf (nan, 1))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_pdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_normal_pdf.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_pdf ([1; 3], 1, [1 10]), ... [1 / sqrt(2 * pi) ... % normpdf ((1 - 1) / 1) 0.1 / sqrt(2 * pi); ... % normpdf ((1 - 1) / 10) / 10 exp(-2) / sqrt(2 * pi) ... % normpdf ((3 - 1) / 1) 3.910426939754558780e-2 ... % normpdf ((3 - 1) / 10) / 10 ], eps)); ***** assert (isequal (stk_distrib_normal_pdf (inf), 0.0)); ***** assert (isequal (stk_distrib_normal_pdf (-inf), 0.0)); ***** assert (isnan (stk_distrib_normal_pdf (nan))); ***** assert (isnan (stk_distrib_normal_pdf (0, 0, -1))); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_ei.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_normal_ei.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_ei (0.0), 1 / sqrt (2 * pi), eps)) ***** test % Decreasing as a function of z ei = stk_distrib_normal_ei (linspace (-10, 10, 200)); assert (all (diff (ei) < 0)) ***** shared M, mu, sigma, ei M = randn (1, 10); mu = randn (5, 1); sigma = 1 + rand (1, 1, 7); ei = stk_distrib_normal_ei (M, mu, sigma); ***** assert (isequal (size (ei), [5, 10, 7])) ***** assert (all (ei(:) >= 0)) ***** assert (isequal (ei, stk_distrib_normal_ei (M, mu, sigma, false))); ***** assert (isequal (ei, stk_distrib_normal_ei (-M, -mu, sigma, true))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_crps.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_normal_crps.m ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (0.0, 0.0, 0.0), 0.0)) ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (0.0, 0.0, 1.0), (sqrt(2) - 1)/sqrt(pi))) ***** shared n, x_obs, mu, sigma, crps, crps_exp x_obs = [ 1.78; -2.29; -1.62; -5.89; 2.88; 0.65; 2.74; -3.42]; % observations mu = [-0.31; -0.59; 1.48; -1.57; -0.05; -0.27; 1.05; 1.27]; % predictions sigma = [ 2.76; 6.80; 1.63; 1.19; 4.98; 9.60; 5.85; 2.24]; % standard dev n = size(x_obs, 1); crps = stk_distrib_normal_crps (x_obs, mu, sigma); ***** assert (isequal (size (crps), [n, 1])) ***** assert (all (crps >= 0)) ***** assert (stk_isequal_tolabs (crps, stk_distrib_normal_crps(mu, x_obs, sigma))) ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (x_obs, mu, 0), abs (x_obs - mu))) crps_ref = [ ... 1.247856605928301 ... 1.757798727719891 ... 2.216236225997414 ... 3.648696666764968 ... 1.832355265287495 ... 2.278618297947438 ... 1.560544734359158 ... 3.455697443411153 ]; assert (stk_isequal_tolabs (crps, crps_ref, 1e-10)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_cdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_normal_cdf.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_cdf ([1; 3], 1, [1 10]), ... [0.5, ... % normcdf ((1 - 1) / 1) 0.5; ... % normcdf ((1 - 1) / 10) 0.5 * erfc(-sqrt(2)), ... % normcdf ((3 - 1) / 1) 0.5 * erfc(-0.1*sqrt(2)) ... % normcdf ((3 - 1) / 10) ], eps)); ***** test [p, q] = stk_distrib_normal_cdf (10); assert (isequal (p, 1.0)); assert (stk_isequal_tolrel (q, 7.6198530241604975e-24, eps)); ***** assert (isequal (stk_distrib_normal_cdf ( 0.0), 0.5)); ***** assert (isequal (stk_distrib_normal_cdf ( inf), 1.0)); ***** assert (isequal (stk_distrib_normal_cdf (-inf), 0.0)); ***** assert (isnan (stk_distrib_normal_cdf ( nan))); ***** assert (isnan (stk_distrib_normal_cdf (0, 0, -1))); ***** assert (isequal (stk_distrib_normal_cdf (0, 0, 0), 1.0)); ***** assert (isequal (stk_distrib_normal_cdf (0, 1, 0), 0.0)); ***** assert (isequal (stk_distrib_normal_cdf (1, 0, 0), 1.0)); 10 tests, 10 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_bivnorm_cdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_bivnorm_cdf.m ***** test z1 = [0 1; -1 2]; z2 = [0 1; 1 -2]; z = cat (3, z1, z2); % 2 x 2 x 2 mu1 = 0; % 1 x 1 x 1 mu2 = [0 1]; % 1 x 2 x 1 sigma1 = [1 3]; % 1 x 2 x 1 sigma2 = [1; 2]; % 2 x 1 x 1 rho = [0; 0.5]; % 2 x 1 x 1 %% BROADCASTING => the result will be a 2 x 2 matrix p = stk_distrib_bivnorm_cdf (z, mu1, mu2, sigma1, sigma2, rho); p11 = 0.25; % mvncdf ([ 0 0], [0 0], [1 0; 0 1]); p12 = 0.315279329909118; % mvncdf ([ 1 1], [0 1], [9 0; 0 1]); p21 = 0.146208349559646; % mvncdf ([-1 1], [0 0], [1 1; 1 4]); p22 = 0.064656239880040; % mvncdf ([ 2 -2], [0 1], [9 3; 3 4]); assert (stk_isequal_tolabs (p, [p11 p12; p21 p22], 1e-14)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf -inf], 0, 0, 1, 1, 0); assert ((p == 0.0) && (q == 1.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf -10], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 7.619853024160489e-24, 1e-12)) assert (q == 1.0) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf 0], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 0.5, 1e-12)) assert (stk_isequal_tolrel (q, 0.5, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf 10], 0, 0, 1, 1, 0); assert (p == 1.0); assert (stk_isequal_tolrel (q, 7.619853024160489e-24, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf inf], 0, 0, 1, 1, 0); assert ((p == 1.0) && (q == 0.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([-inf inf], 0, 0, 1, 1, 0); assert ((p == 0.0) && (q == 1.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([-10 inf], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 7.619853024160489e-24, 1e-12)) assert (q == 1.0) ***** test [p, q] = stk_distrib_bivnorm_cdf ([0 inf], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 0.5, 1e-12)) assert (stk_isequal_tolrel (q, 0.5, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([10 inf], 0, 0, 1, 1, 0); assert (p == 1.0); assert (stk_isequal_tolrel (q, 7.619853024160489e-24, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf inf], 0, 0, 1, 1, 0); assert ((p == 1.0) && (q == 0.0)) ***** test % A mixture of singular and non-singular cases p = stk_distrib_bivnorm_cdf ([0 0], 0, 0, [1; 0], 1, 0); assert (isequal (p, [0.25; 0.5])); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_mindist.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_mindist.m ***** test d = 3; x = rand(7, d); md1 = stk_mindist(x); md2 = stk_mindist(stk_dataframe(x)); assert(stk_isequal_tolabs(md1, md2)); ***** test for nc = [0 5 10], x = zeros(0, nc); d = stk_mindist(x); assert(isempty(d)); end ***** test for nc = [0 5 10], x = rand(1, nc); d = stk_mindist(x); assert(isempty(d)); end ***** test for nr = [2 5 10], x = zeros(nr, 0); d = stk_mindist(x); assert(isequal(d, 0.0)); end ***** test nrep = 20; TOL_REL = 1e-15; for irep = 1:nrep, n = 2 + floor(rand * 10); d = 1 + floor(rand * 10); x = rand(n, d); z = stk_mindist(x); assert(isequal(size(d), [1, 1])); assert(~isnan(d)); assert(~isinf(d)); % check the result mindist = Inf; for i = 1:(n-1), for j = (i+1):n, mindist = min(mindist, norm(x(i,:) - x(j,:))); end end assert(abs(z - mindist) <= TOL_REL * mindist); end 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_gpquadform.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_gpquadform.m ***** shared x, y, z, rx, ry, rz x = rand(5, 2); rx = rand(5, 2) + 1; y = rand(6, 2); ry = rand(6, 2) + 1; z = rand(5, 3); rz = rand(5, 3) + 1; ***** error Q = stk_gpquadform(x, ry, y, ry) ***** error Q = stk_gpquadform(x, rz, y, ry) ***** error Q = stk_gpquadform(x, rx, y, rx) ***** error Q = stk_gpquadform(x, rx, y, rz) ***** error Q = stk_gpquadform(x, rx, z, ry) ***** shared x, y, z, rx, ry, rz x = zeros (11, 5); rx = 1/sqrt(2) * ones (11, 5); y = zeros (13, 5); ry = 1/sqrt(2) * ones (13, 5); z = ones ( 7, 5); rz = 1/sqrt(2) * ones ( 7, 5); ***** test Qx = stk_gpquadform(x, [], rx); assert(isequal(Qx, zeros(11))); ***** test Qxx = stk_gpquadform(x, x, rx, rx); assert(isequal(Qxx, zeros(11))); ***** test Qxy = stk_gpquadform(x, y, rx, ry); assert(isequal(Qxy, zeros(11, 13))); ***** test Qzz = stk_gpquadform(z, [], rz); assert(isequal(Qzz, zeros(7))); ***** test Qxz = stk_gpquadform(x, z, rx, rz); assert(stk_isequal_tolabs(Qxz, 5 * ones(11, 7))); ***** test x = randn(5, 3); rx = 1 + rand(5, 3); y = randn(5, 3); ry = 1 + rand(5, 3); Q1 = stk_gpquadform(x, y, rx, ry, true); % pairwise Q2 = stk_gpquadform(x, y, rx, ry, false); assert(isequal(size(Q1), [5 1])); assert(isequal(size(Q2), [5 5])); assert(stk_isequal_tolabs(Q1, diag(Q2))); ***** test x = randn(5, 3); rx = 1 + rand(5, 3); Q1 = stk_gpquadform(x, [], rx, [], true); % pairwise assert(stk_isequal_tolabs(Q1, zeros(5, 1))); Q1 = stk_gpquadform(x, x, rx, rx, true); % pairwise assert(stk_isequal_tolabs(Q1, zeros(5, 1))); ***** shared x, y, z, rx, ry, rz x = zeros (11, 5); rx = 2 * ones (11, 5); y = zeros (13, 5); ry = 2 * ones (13, 5); z = ones ( 7, 5); rz = 2 * ones ( 7, 5); ***** test Qx = stk_gpquadform(x, [], rx); assert(isequal(Qx, zeros(11))); ***** test Qxx = stk_gpquadform(x, x, rx, rx); assert(isequal(Qxx, zeros(11))); ***** test Qxy = stk_gpquadform(x, y, rx, ry); assert(isequal(Qxy, zeros(11, 13))); ***** test Qzz = stk_gpquadform(z, [], rz); assert(isequal(Qzz, zeros(7))); ***** test Qxz = stk_gpquadform(x, z, rx, rz); assert(stk_isequal_tolabs(Qxz, 5/8 * ones(11, 7))); 17 tests, 17 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist_exact.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_filldist_exact.m ***** test d = 3; x = rand(7, d); box = repmat([0; 1], 1, d); fd1 = stk_filldist_exact(x, box); fd2 = stk_filldist_exact(stk_dataframe(x), stk_dataframe(box)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test for dim = 1:6, x = 0.5 * ones(1, dim); fd = stk_filldist_exact(x); % [0; 1]^d is the default box assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], box = repmat([1; 2], 1, dim); x = 1 + 0.5 * ones(1, dim); fd = stk_filldist_exact(x, box); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], x = zeros(1, dim); [fd, ymax] = stk_filldist_exact(x); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist_discretized.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_filldist_discretized.m ***** error stk_filldist_discretized(0.0) % incorrect nb of arguments ***** error stk_filldist_discretized(0.0, []) % second arg is empty ***** error stk_filldist_discretized([], 0.0) % first arg is empty ***** test d = 3; x = rand(7, d); y = rand(20, d); fd1 = stk_filldist_discretized(x, y); fd2 = stk_filldist_discretized(stk_dataframe(x), stk_dataframe(y)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test n = 5; for dim = 1:10, x = rand(n, dim); fd = stk_filldist_discretized(x, x); assert(stk_isequal_tolabs(fd, 0.0)); end ***** test for dim = 1:10, x = rand(1, dim); y = rand(1, dim); fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, norm(x - y))); end ***** test n = 4; for dim = 2:10, x = zeros(n, dim); y = rand(1, dim); fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, max(stk_dist(x, y)))); end ***** test for dim = [1 3 6], x = 0.5 * ones(1, dim); y = stk_sampling_regulargrid(2^dim, dim); % [0; 1]^d is the default box fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], x = zeros(1, dim); y = stk_sampling_regulargrid(3^dim, dim); [fd, ymax] = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_filldist.m ***** test %%% exact d = 3; x = rand(7, d); box = repmat([0; 1], 1, d); fd1 = stk_filldist(x, box); fd2 = stk_filldist(stk_dataframe(x), stk_dataframe(box)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test %%% discretized d = 3; x = rand(7, d); y = rand(20, d); fd1 = stk_filldist(x, y); fd2 = stk_filldist(stk_dataframe(x), stk_dataframe(y)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test n = 5; % must be bigger than 2 for dim = 1:10, x = rand(n, dim); fd = stk_filldist(x, x); assert(stk_isequal_tolabs(fd, 0.0)); end ***** test %%% exact for dim = 1:6, x = 0.5 * ones(1, dim); fd = stk_filldist(x); % [0; 1]^d is the default box assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test %%% discretized for dim = 1:6, x = 0.5 * ones(1, dim); y = stk_sampling_regulargrid(2^dim, dim); % [0; 1]^d is the default box fd = stk_filldist(x, y); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], box = repmat([1; 2], 1, dim); x = 1 + 0.5 * ones(1, dim); fd = stk_filldist(x, box); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test dim = 3; box = repmat([-1; 1], 1, dim); x = stk_sampling_randunif(20, dim, box); y = stk_sampling_regulargrid(3^dim, dim, box); fd1 = stk_filldist(x, box); fd2 = stk_filldist(x, y); assert(fd1 >= fd2 - 10 * eps); ***** test %%% exact for dim = [1 3 7], x = zeros(1, dim); [fd, ymax] = stk_filldist_exact(x); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end ***** test %%% discretized for dim = [1 3 7], x = zeros(1, dim); y = stk_sampling_regulargrid(3^dim, dim); [fd, ymax] = stk_filldist(x, y); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_dist.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_dist.m ***** error stk_dist(); ***** error stk_dist(0, 0, 0); ***** error stk_dist(0, 0, 0, 0); ***** error stk_dist(0, ones(1, 2)); ***** error stk_dist(eye(3), ones(1, 2)); ***** error stk_dist(ones(2, 1), zeros(2)); ***** shared x, y, z x = zeros(11, 5); y = zeros(13, 5); z = ones(7, 5); ***** test Dx = stk_dist(x); assert(isequal(Dx, zeros(11))); ***** test Dxx = stk_dist(x, x); assert(isequal(Dxx, zeros(11))); ***** test Dxy = stk_dist(x, y); assert(isequal(Dxy, zeros(11, 13))); ***** test Dzz = stk_dist(z, z); assert(isequal(Dzz, zeros(7))); ***** test Dxz = stk_dist(x, z); assert(stk_isequal_tolabs(Dxz, sqrt(5)*ones(11, 7))); ***** test x = randn(5,3); y = randn(5,3); D1 = stk_dist(x, y, true); % pairwise D2 = stk_dist(x, y); assert(stk_isequal_tolabs(D1, diag(D2))); ***** test x = randn(5,3); D1 = stk_dist(x, [], true); % pairwise assert(stk_isequal_tolabs(D1, zeros(5, 1))); D1 = stk_dist(x, x, true); % pairwise assert(stk_isequal_tolabs(D1, zeros(5, 1))); 13 tests, 13 passed, 0 known failure, 0 skipped [inst/misc/design/stk_phipcrit.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/design/stk_phipcrit.m ***** shared x x = [0, 0.2, 0.4, 0.6, 0.8, 1.0; 0, 0.6, 0.8, 1.0, 0.2, 0.4]'; ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 10), 3.946317664423303, 1e-15)) ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 50), 3.614077252813102, 1e-15)); ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 100), 3.574589859827413, 1e-15)); ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 1e9), 1 / stk_mindist (x), 1e-8)); ***** assert (isequal (stk_phipcrit (ones (2)), Inf)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/design/stk_maxabscorr.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/design/stk_maxabscorr.m ***** assert (stk_isequal_tolabs (0.0, ... % Test on an OLHS(5) stk_maxabscorr ([0.4 0.8 0 -0.4 -0.8; -0.8 0.4 0 0.8 -0.4]'))); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/stk_lm_polynomial.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/stk_lm_polynomial.m ***** error lm = stk_lm_polynomial (); ***** test lm = stk_lm_polynomial (-1); assert (isa (lm, 'stk_lm_null')); ***** test lm = stk_lm_polynomial (0); assert (isa (lm, 'stk_lm_constant')); ***** test lm = stk_lm_polynomial (1); assert (isa (lm, 'stk_lm_affine')); ***** test lm = stk_lm_polynomial (2); assert (isa (lm, 'stk_lm_quadratic')); ***** test lm = stk_lm_polynomial (3); assert (isa (lm, 'stk_lm_cubic')); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m ***** test stk_test_class ('stk_lm_quadratic') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_quadratic/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_quadratic/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_quadratic (), x); assert (isequal (size (P), [n, 1 + d * (d + 3) / 2])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_null/stk_lm_null.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_null/stk_lm_null.m ***** test stk_test_class ('stk_lm_null') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_null/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_null/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_null (), x); assert (isequal (size (P), [n, 0])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_matrix/stk_lm_matrix.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_matrix/stk_lm_matrix.m ***** test stk_test_class ('stk_lm_matrix') ***** test %%% dim 1 data = rand (10, 1); idx = 3:7; lm = stk_lm_matrix (data); assert (isa (lm, 'stk_lm_matrix')); assert (isequal (data(idx, :), feval (lm, idx))); ***** test %%% dim 3 data = rand (10, 3); idx = 3:7; lm = stk_lm_matrix (data); assert (isa (lm, 'stk_lm_matrix')); assert (isequal (data(idx, :), feval (lm, idx))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_cubic/stk_lm_cubic.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_cubic/stk_lm_cubic.m ***** test stk_test_class ('stk_lm_cubic') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_cubic/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_cubic/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_cubic (), x); assert (isequal (size (P), [n, 1 + d * (11 + d * (6 + d)) / 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_constant/stk_lm_constant.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_constant/stk_lm_constant.m ***** test stk_test_class ('stk_lm_constant') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_constant/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_constant/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_constant (), x); assert (isequal (size (P), [n, 1])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_affine/stk_lm_affine.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_affine/stk_lm_affine.m ***** test stk_test_class ('stk_lm_affine') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_affine/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_affine/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_affine (), x); assert (isequal (size (P), [n, d + 1])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_hartman6.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testfun_hartman6.m ***** test x1 = [0.20169 0.150011 0.476874 0.275332 0.311652 0.657300]; y1 = -3.322368011391339; x2 = [0.20168952 0.15001069 0.47687398 0.27533243 0.31165162 0.65730054]; y2 = -3.322368011415512; y = stk_testfun_hartman6 ([x1; x2]); assert (stk_isequal_tolabs (y, [y1; y2], 1e-15)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_hartman4.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testfun_hartman4.m ***** test x = [0.1873 0.1906 0.5566 0.2647 ; 0.18744768 0.19414868 0.558005333 0.26476409]; y = stk_testfun_hartman4 (x); assert (stk_isequal_tolabs (y, ... [-3.729722308557300; -3.729840440436292], 1e-15)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_hartman3.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testfun_hartman3.m ***** test x1 = [0.1, 0.55592003, 0.85218259]; y1 = -3.862634748621772; x2 = [0.114614 0.554649 0.852547]; y2 = -3.862747199255087; y = stk_testfun_hartman3 ([x1; x2]); assert (stk_isequal_tolabs (y, [y1; y2], 1e-15)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_goldsteinprice.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testfun_goldsteinprice.m ***** test % Use with nargin == 0 for visualisation stk_testfun_goldsteinprice (); close all; warning: using the gnuplot graphics toolkit is discouraged The gnuplot graphics toolkit is not actively maintained and has a number of limitations that are unlikely to be fixed. Communication with gnuplot uses a one-directional pipe and limited information is passed back to the Octave interpreter so most changes made interactively in the plot window will not be reflected in the graphics properties managed by Octave. For example, if the plot window is closed with a mouse click, Octave will not be notified and will not update its internal list of open figure windows. The qt toolkit is recommended instead. ***** assert (stk_isequal_tolabs ... (stk_testfun_goldsteinprice ([0, -1]), 3.0, 1e-12)) 2 tests, 2 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testcase_truss3.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testcase_truss3.m ***** shared tc, xd, n tc = stk_testcase_truss3 (); n = 5; xd = stk_sampling_randunif (n, [], tc.search_domain); ***** test v = stk_testfun_truss3_vol (xd, tc.constants); z = stk_testfun_truss3_bb (xd, tc.constants); assert (isequal (size (v), [n 1])); assert (isequal (size (z), [n 5])); ***** test F = stk_dataframe (zeros (n, 2), {'F1' 'F2'}); F(:, 1) = tc.constants.F1_mean + tc.constants.F1_std * randn (n, 1); F(:, 2) = tc.constants.F2_mean + tc.constants.F2_std * randn (n, 1); x = [xd F]; v = stk_testfun_truss3_vol (x, tc.constants); z = stk_testfun_truss3_bb (x, tc.constants); assert (isequal (size (v), [n 1])); assert (isequal (size (z), [n 5])); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc05.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc05.m ***** test stk_example_misc05; close all; assert (isa (model.lognoisevariance, 'stk_gaussiannoise_het0')); #==========================# # stk_example_misc05 # #==========================# 'stk_example_misc05' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc05.m STK_EXAMPLE_MISC05 Parameter estimation for heteroscedastic noise variance DESCRIPTION We consider a 1d prediction problem with noisy data, where the variance of the noise depends on the input location. A simple heteroscedastic model is used, where the only parameter to be estimated is a dispersion parameter (the square of a scale parameter). More preciesely, the variance of the noise is assumed to be of the form tau^2(x) = phi * (x + 1) ^ 2, and the dispersion parameter phi is estimated together with the parameters of the covariance function. EXPERIMENTAL FEATURE WARNING This script demonstrates an experimental feature of STK (namely, gaussian noise model objects). STK users that wish to experiment with it are welcome to do so, but should be aware that API-breaking changes are likely to happen in future releases. We invite them to direct any questions, remarks or comments about this experimental feature to the STK mailing list. See also: stk_example_kb09 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = dim = 1 param = 0.066833 0.707310 lognoisevariance = gn = | | Heteroscedastic variance model: tau^2(x) = dispersion * variance_function(x) | | dispersion: 2.4169 [log_dispersion = 0.8825] | variance_function: @(x) (x + 1) .^ 2 | 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc04.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc04.m ***** test stk_example_misc04; close all; #==========================# # stk_example_misc04 # #==========================# 'stk_example_misc04' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc04.m STK_EXAMPLE_MISC04 Pareto front simulation DESCRIPTION We consider a bi-objective optimization problem, where the objective functions are modeled as a pair of independent stationary Gaussian processes with a Matern 5/2 anisotropic covariance function. Figure (a): represent unconditional realizations of the Pareto front and and estimate of the probability of being non-dominated at each point of the objective space. Figure (b): represent conditional realizations of the Pareto front and and estimate of the posteriorior probability of being non-dominated at each point of the objective space. EXPERIMENTAL FUNCTION WARNING This script uses the stk_plot_probdom2d function, which is currently considered an experimental function. Read the help for more information. REFERENCE [1] Michael Binois, David Ginsbourger and Olivier Roustant, Quantifying uncertainty on Pareto fronts with Gaussian Process conditional simu- lations, European J. of Operational Research, 2043(2):386-394, 2015. See also: stk_plot_probdom2d Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign multiplot> set style increment default; ^ line 0: warning: deprecated command Proba. of being dominated simulated Pareto fronts--| || |+#$ %@&%% *#= *#+*$ + | 1000 +---++--+--+--++---+ ++||00% 600 +|+#$ %@&%% *#= *#+*$ +-+| |||##|##|##|##|##|#| || #|##$#%@&%%#*#=#*##*$### | +|+##+##+##+##+##+#+ || #|##$#%@&%%#*#=#*##*$### | |#################| || 400 +|+#$#%@&%%#*#=#*##*$$#+-+| |#################| || #|##$#%@&%%#*#=#*$$$$$$$$$| 500 +---+##########+---+ ++||5% #|##$$%$$$$$$$$$$$$$$$$$$$| |#################| || 200 +|+###%@&%%#*#=#*##*###+-+| |#################| || #|####%@&%%%*%=%%%%%%%%%%%| |#################| || #|##**%**************second objective|#################| ++||0% 0 +|+###%@&#%#*#=#*######+-+| +---+##########+---+ || #|####%###################| |#################| || #|####%%%%%%%%%%%%%%%%%%%%| |#################| || -200 +|+###&@##%#*#############| -500 |#################| || #|####&@&&&&**************| +---+##########+---+ ++||5% -400 +|+####@@@@@@@@@@@@@@@@@@@| |#################| || #|########%%%%%%%%%%%%%%%%| |#################| || #|###################### | +|+##+##+##+##+##+#+ || -600 +|------------------------| -1000 |+|--|--|--|--|--|-| || ##+###+###+###+###+####+ -+---+100+100200+---+0++-0% -200-1000 0 10002000 3000 first objective first objective 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc03.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc03.m ***** test stk_example_misc03; close all; #==========================# # stk_example_misc03 # #==========================# 'stk_example_misc03' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc03.m STK_EXAMPLE_MISC03 How to deal with (known) seasonality Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = dim = 1 param = 2.8092 -2.0715 lognoisevariance = -4.7161 model2 = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = @(t) [ones(length (t), 1), sin(2 * pi * t / T0), cos(2 * pi * t / T0)] dim = 1 param = -9.7177 -1.9531 lognoisevariance = -4.7133 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc02.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc02.m ***** test stk_example_misc02; close all; #==========================# # stk_example_misc02 # #==========================# 'stk_example_misc02' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc02.m STK_EXAMPLE_MISC02 How to use priors on the covariance parameters A Matern covariance in dimension one is considered as an example. A Gaussian prior is used for all three parameters: log-variance, log-regularity and log- inverse-range. The corresponding parameter estimates are Maximum A Posteriori (MAP) estimates or, more precisely, Restricted MAP (ReMAP) estimates. Several values for the variance of the prior are successively considered, to illustrate the effect of this prior variance on the parameter estimates. When the variance is small, the MAP estimate is close to the mode of the prior. On the other hand, when the variance is large, the prior becomes "flat" and the MAP estimate is close to the ReML estimate (see figure b). Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign | prior std = 10.00 | prior std = 1.00 3 +|+ 4 +|+ #### %|%## ####%%%% 3 +|+# ##%%%%% 2 +|+&&&%&&&%######%&&&&&&&& 2 +|+&&%##%%%######%%&&&&&&& 1 +|+#==GG==&&%###&&&######& 1 +|+#&&GG==&&%###&&&&#####& =|===&&&&====G=G=====predicted outpu| z===&&====G=G========== 0 +|+&&&##%&&&&&&&&&&######& 0 +|+&&&##%&&&&&&&&&&######& -1 +|+%#############%&&&&&&&& -1 +|+%#############%&&&&&&&& +|------------------------- -2 +|------------------------- -2 +-+##+####+####+####+### + -3 +-+##+####+####+####+####+ 0 0.2 0.4 0.6 0.8 1 0 0.2 0.4 0.6 0.8 1 | prior std = 0.20 | prior std = 0.01 6 +|+ 6 +|+ | ### | # 4 +|+#################%%%%%% 4 +|+##################%%%%% 2 +|+%####&&%######%&&&&&&&& 2 +|+#####%%########&&&&&&&& &|&&==GG=====&&======predicted outpu| z&=GG=====#%=========== 0 +|+==&###%&&=G=G&&&&#####& 0 +|+===####%&=G=G&&&&&&###& -2 +|+&%#############%&&&&&&& -2 +|+&###############%%&&&&& +|------------------------- +|------------------------- -4 +-+##+####+####+####+### + -4 +-+##+####+####+####+### + 0 0.2 0.4 0.6 0.8 1 0 0.2 0.4 0.6 0.8 1 input x input x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc01.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc01.m ***** test stk_example_misc01; close all; #==========================# # stk_example_misc01 # #==========================# 'stk_example_misc01' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc01.m STK_EXAMPLE_MISC01 Several correlation functions from the Matern family The Matern 1/2 correlation function is also known as the "exponential correla- tion function". This is the correlation function of an Ornstein-Ulhenbeck pro- cess. The Matern covariance function tends to the Gaussian correlation function when its regularity (smoothness) parameter tends to infinity. See also: stk_materncov_iso, stk_materncov_aniso Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe06.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe06.m ***** test stk_example_doe06; close all; #=========================# # stk_example_doe06 # #=========================# 'stk_example_doe06' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe06.m STK_EXAMPLE_DOE06 Sequential design for the estimation of an excursion set In this example, we consider the problem of estimating the set Gamma = { x in X | f(x) > z_crit }, where z_crit is a given value, and/or its volume. In a typical "structural reliability analysis" problem, Gamma would represent the failure region of a certain system, and its volume would correspond to the probability of failure (assuming a uniform distribution for the input). A Matern 5/2 prior with known parameters is used for the function f, and the evaluations points are chosen sequentially using any of the sampling criterion described in [1] (see also [2], section 4.3). REFERENCE [1] B. Echard, N. Gayton and M. Lemaire (2011). AK-MCS: an active learning reliability method combining Kriging and Monte Carlo simulation. Structural Safety, 33(2), 145-154. [2] J. Bect, D. Ginsbourger, L. Li, V. Picheny and E. Vazquez (2012). Sequential design of computer experiments for the estimation of a probability of failure. Statistics and Computing, 22(3), 773-793. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. Volume (reference value): 20.51% data_init = <4x2 stk_dataframe array> : x z initial design #1 : 0.000000 0.00000 initial design #2 : 0.333333 -0.43063 initial design #3 : 0.666667 -0.66886 initial design #4 : 1.000000 -1.20558 line 0: warning: iconv failed to convert degree sign |-------------------------Groung truth----------------------------| 1 +|+ + + + + +-+| +| + + + + +| #|############################################################### | 0.5 +|+#############################################################+-+| #|############################################################### | #|############################################################### | $|$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$| 0 *|*****##***####***#######**#######**##########**########**#####+-+| #|####****########**#####**#########*##########*##########*###### | z #|#################***#***###########*########**##########**##### | -0.5 +|+##################***#############**######**############*####+-+| #|####################################**####**#############**#### | #|#####################################******###############**### | #|----------------------------+##############################**## | -1 +|***?***z = f(x), below zcrit|###############################*#+-+| #|###?###z = f(x), above zcrit|###############################*****| +|-----------------------------------------------------------------| -1.5 +-+##########+############+#############+############+##########+-+ 0 0.2 0.4 0.6 0.8 1 x Iteration #1 | Current sample size: n = 4 | Volume estimate (plugin): 0.00000 [ref: 0.20510] | Upper-bound on posterior std: 4.0977e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 4 +|+ ### | #%%%%%%%%%## ###%%%### ######## 2 +|+&&&&&&&&&&&&&&%#####%%&&&&&&&&&&&%#######%%&&&&&&&&%%### 0 +|+###F###################################################### z #|&&&&##########&***G*******************G*******************G -2 +|+%%&&&&&&&&&&&&%#####%&&&&&&&&&&&&&&%###%&&&&&&#####&&&&&& -4 +|+#####%%%%%##############%%%%%%%###########%%%&&&&&&&%%## +|------------------------------------------------------------ -6 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.4 +|+***F**** + + + + +-+| +|** **** + + + +| 0.3 +|*##########***##########################################+-+| #|#############**#########********######################### | criterion +|+#############**#######**######***######################+-+| #|###############*#####***#########**#########********##### | 0.1 +|+##############**####*############**######***######***##+-+| *|-----------------------------------------------------------| 0 *-+#########+#####*****#+###########+#******####+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #2 | Current sample size: n = 5 | Volume estimate (plugin): 0.00000 [ref: 0.20510] | Upper-bound on posterior std: 3.0166e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 4 +|+ | ######## ######## 2 +|+##########%%#########%&&&&&&&&&&&%#######%%&&&&&&&&%%### 0 +|+########################################################## z #|%%%##%&&&&&&&&&***G*********F*********G*******************G -2 +|+####################%&&&&&&&&&&&&&&####%&&&&&&#####&&&&&& -4 +|+#########################%%%%%%###########%%%&&&&&&&%%## +|------------------------------------------------------------ -6 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.25 +|+ + + **F* + + +-+| +| + + *** *** + + +| 0.2 +|+######################**######**#######################+-+| 0.15 +|+########*****########**#########*###########*****######+-+| #|########**###**#######*##########**########***###***##### | 0.1 +|**#####**#####*######**###########**######**#######**###+-+| 0.05 +|***####*######**#####*#############*#####**#########**##+-+| +|-----------------------------------------------------------| 0 **+#*****###+#####*****#+###########+#******####+########**** 0 0.2 0.4 0.6 0.8 1 x Iteration #3 | Current sample size: n = 6 | Volume estimate (plugin): 0.10240 [ref: 0.20510] | Upper-bound on posterior std: 2.8048e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 2 +|+ ####### 1 +|+ ###### #%%%# %%%%# ##%%%%%%%%%%# 0 +|+##############################F########################### -1 +|+&&&&*************G***&&&&%###&===****G****########====&&&& z #|########%&&&&&&&%######################&&&****************G -2 +|+########################################%&&&&#######&&&&% -3 +|+##########################################%%&&&&&&&&&%%# -4 +|------------------------------------------------------------ -5 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + * F + + +-+| +| + + ** *** + + +| 0.4 +|+#######################***###*#*#######################+-+| 0.3 +|+######################**#*###*#**######################+-+| criterion #|######################**##*##**##*####################### | 0.2 +|+#####################*###**#*###**#####################+-+| 0.1 +|**###################**####*#*####*#####################+-+| +|-----------------------------------------------------------| 0 **+#******##+##*********+####***####+**********#+######****** 0 0.2 0.4 0.6 0.8 1 x Iteration #4 | Current sample size: n = 7 | Volume estimate (plugin): 0.11520 [ref: 0.20510] | Upper-bound on posterior std: 2.2806e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+###########################################%%&&&&&&%%### 0 +|+#####################F#################################### z &|&&=*G*************G***=&%#####*G******G**************==&&&# -1 +|+######%&&&&&&&&&######################%&&&&&#######******G -2 +|+##########################################%&&&&&&&&&&&&&# -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + F * + + +-+| +| + * * + + +| 0.4 +|+####################***#####*##########################+-+| 0.3 +|+####################*#*#####*##########################+-+| criterion #|#####################*#*#####*########################### | 0.2 +|+####################*#**####*#################**#######+-+| 0.1 +|***##################*##*####*##############*********###+-+| +|-----------------------------------------------------------| 0 **+#*******************#+##******************###+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #5 | Current sample size: n = 8 | Volume estimate (plugin): 0.08270 [ref: 0.20510] | Upper-bound on posterior std: 2.0770e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+##########################################%%&&&&&&&&%### 0 +|+#######################F################################## z &|&&**G*************G***G%######*G******G***************=&&&# -1 +|+#######%&&&&&&%###################%%##%&&&&&########*****G -2 +|+##########################################%&&&&&&&&&&&&&# -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + F * + + +-+| +| + + * * + + +| 0.4 +|+#######################*####*##########################+-+| 0.3 +|+#######################*####*##########################+-+| criterion #|########################*####*########################### | 0.2 +|+#######################*####*###############******#####+-+| 0.1 +|+######################***###*#############***####***###+-+| +|-----------------------------------------------------------| 0 **+#******##+#************#******************###+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #6 | Current sample size: n = 9 | Volume estimate (plugin): 0.08540 [ref: 0.20510] | Upper-bound on posterior std: 1.8974e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+##########################################%%&&&&&&&%%### 0 +|+############################F############################# z &|&&**G*************G***G#######*G******G***************=&&&# -1 +|+#######%%&&&&%%#######################%&&&&&########*****G -2 +|+##########################################%&&&&&&&&&&&&&# -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + F + + +-+| +| + + * + + +| 0.4 +|+#######################*####*##########################+-+| 0.3 +|+#######################*####*##########################+-+| criterion #|########################*####*########################### | 0.2 +|+#######################*####*################*****#####+-+| 0.1 +|+#######################*####*#############***####***###+-+| +|-----------------------------------------------------------| 0 **+#******##+#*******************************###+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #7 | Current sample size: n = 10 | Volume estimate (plugin): 0.08580 [ref: 0.20510] | Upper-bound on posterior std: 1.9671e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+##########################################%%&&&&&&&&%### 0 +|+#######################F################################## z &|&&**G*************G***G#######*G******G****************&&&# -1 +|+#######%%&&&&%#########################&&&&&&########****G -2 +|+##########################################%%&&&&&&&&&&&&# -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + F + + +-+| +| + + * + + +| 0.4 +|+#######################*###############################+-+| 0.3 +|+#######################*###############################+-+| criterion #|########################*################################ | 0.2 +|+#######################*####################*******####+-+| 0.1 +|+#######################*##################***#####***##+-+| +|-----------------------------------------------------------| 0 **+#******##+##******************************###+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #8 | Current sample size: n = 11 | Volume estimate (plugin): 0.08590 [ref: 0.20510] | Upper-bound on posterior std: 1.9580e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+##########################################%%&&&&&&&&%### 0 +|+########################################################## z &|&***G*************G***G#######*G******G********F*******&&&# -1 +|+#######%%&&&&%#########################&&&&&&########****G -2 +|+##########################################%%&&&&&&&&&&&&# -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.2 +|+ + + + *F** +-+| +| + + + ** ** +| 0.15 +|+###########################################**####**####+-+| #|############################################*######**#### | 0.1 +|+##########################################*########**##+-+| #|**######****###############################*#########*### | 0.05 +|***####**##**#############################**#########**#+-+| +|-----------------------------------------------------------| 0 **+#*****###+##*****************************####+########**** 0 0.2 0.4 0.6 0.8 1 x Iteration #9 | Current sample size: n = 12 | Volume estimate (plugin): 0.21550 [ref: 0.20510] | Upper-bound on posterior std: 2.1084e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1.5 +|+ 1 +|+ #### #|###########################################%&&&%&&&&&&%## 0.5 +|+&&###%&&&&&&%%#########****G*###########%==***G****#&&%# z 0 +|+###########################################F############## -0.5 +|+&&&&&************G***#########G**&&%#%****&&%####%==***&& #|######%&&&&##&&&&&###############*****G*&&%#########===***# -1 +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+###########+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + F + ** +-+| +| + + + ** + ** +| 0.4 +|+##########################################**######**###+-+| 0.3 +|+##########################################***#####***##+-+| criterion #|###########################################*#*####**#*### | 0.2 +|+##########################################*#*####*##*##+-+| 0.1 +|+#########################################*##*####*##**#+-+| +|-----------------------------------------------------------| 0 **+#******##+##******************************###****####***** 0 0.2 0.4 0.6 0.8 1 x Iteration #10 | Current sample size: n = 13 | Volume estimate (plugin): 0.21710 [ref: 0.20510] | Upper-bound on posterior std: 1.5588e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ 0.5 +|+ #%%%%%# ***G*&%%%# #|##########################################F################ 0 +|+***G******#=====%#%**G*#####**G*######%***######&=***&&% z -0.5 +|+&&%#&&&&#********G**%#########&***&&%G**&########%==***&% -1 +|+######%&&&&&&&&&################&*****#############&==***& #|#########%%%%%#######################################%===*G -1.5 +|------------------------------------------------------------ -2 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + F + * +-+| +| + + + * + * +| 0.4 +|+#########################################*#######*#####+-+| 0.3 +|+#########################################*#######**####+-+| criterion #|##########################################*######***##### | 0.2 +|+#########################################*######*#*####+-+| 0.1 +|+#########################################*######*#**###+-+| +|-----------------------------------------------------------| 0 **+#******##+##*************************************###****** 0 0.2 0.4 0.6 0.8 1 x Iteration #11 | Current sample size: n = 14 | Volume estimate (plugin): 0.21460 [ref: 0.20510] | Upper-bound on posterior std: 1.3986e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ 0.5 +|+ #%%%%%# ***G*%%### #|##################################################F######## 0 +|+***G******#=====%#%**G*#####**G*#######***######&****&&% z -0.5 +|+&&%#&&&&#********G**%#########&***&&#G**#########%==***&% -1 +|+######%&&&&&&&&&################&*****#############&==***& #|#########%%%%%#######################################%===*G -1.5 +|------------------------------------------------------------ -2 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + + F +-+| +| + + + + * +| 0.4 +|+#########################################*#######*#####+-+| 0.3 +|+#########################################*#######*#####+-+| criterion #|##########################################*######***##### | 0.2 +|+#########################################*######*#*####+-+| 0.1 +|+#########################################*######*#*####+-+| +|-----------------------------------------------------------| 0 **+#******##+##*************************************##******* 0 0.2 0.4 0.6 0.8 1 x Iteration #12 | Current sample size: n = 15 | Volume estimate (plugin): 0.20490 [ref: 0.20510] | Upper-bound on posterior std: 9.9805e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | ###### *** 0.5 +|+%%###%&&&&&&%##########****G##############*G*&G**####### 0 +|+################################################F######### z %|&&&*G*********====&****#######*G*%#####&**########***&### -0.5 +|+#####&&&#####****G*&###########***&&&G**##########&**&&% -1 +|+######%&&&&&&&&%################&*****#############&****& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + + F +-+| +| + + + + * +| 0.4 +|+################################################*######+-+| 0.3 +|+#########################################*######*######+-+| criterion #|##########################################*######*####### | 0.2 +|+#########################################*######*######+-+| 0.1 +|+#########################################*######*######+-+| +|-----------------------------------------------------------| 0 **+#******##+##********************************************** 0 0.2 0.4 0.6 0.8 1 x Iteration #13 | Current sample size: n = 16 | Volume estimate (plugin): 0.20510 [ref: 0.20510] | Upper-bound on posterior std: 9.6734e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | ###### *** 0.5 +|+%%###%&&&&&&%##########****G##############*G*&G**####### 0 +|+#########################################F################ z %|&&&*G*********====&****#######*G*%#####&**########***#### -0.5 +|+#####&&&#####****G*&###########***&&&G**##########&**&%# -1 +|+######%&&&&&&&&%################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.35 +|+ + + + + +-+| 0.3 +|+ + + + F + +-+| 0.25 +|+#########################################*#############+-+| 0.2 +|+#########################################*#############+-+| #|##########################################*############## | 0.15 +|+#########################################*#############+-+| 0.1 +|**######****##############################*#############+-+| 0.05 +|-----------------------------------------------------------| 0 **+#******##+##********************************************** 0 0.2 0.4 0.6 0.8 1 x Iteration #14 | Current sample size: n = 17 | Volume estimate (plugin): 0.20510 [ref: 0.20510] | Upper-bound on posterior std: 9.6359e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | ###### *** 0.5 +|+%%###%&&&&&&%##########****G##############*G*&G**####### 0 +|+########################################################## z %|&&&*G****F****====&****#######*G*%#####&**########***#### -0.5 +|+#####&&&#####****G*&###########***&&&G**##########&**&%# -1 +|+######%&&&&&&&&%################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.1 +|+ + + + + +-+| +| + + + + +| 0.08 +|**######*F**############################################+-+| 0.06 +|**######*##**###########################################+-+| #|***####**###*############################################ | 0.04 +|+#*####*####**##########################################+-+| 0.02 +|+#*####*#####*##########################################+-+| +|-----------------------------------------------------------| 0 **+##****###+###********************************************* 0 0.2 0.4 0.6 0.8 1 x Iteration #15 | Current sample size: n = 18 | Volume estimate (plugin): 0.20510 [ref: 0.20510] | Upper-bound on posterior std: 9.5173e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | *** 0.5 +|+######%%##%%%##########****G##############*G*&G**####### 0 +|+##########F############################################### z &|****G*=&###&&*****&****#######*G*%#####&**########***#### -0.5 +|+%%##########%&&&*G*&###########***&&&G**##########&**&%# -1 +|+################################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.2 +|+ + + + + +-+| +| + + + + +| 0.15 +|+#######***F############################################+-+| #|########*****############################################ | 0.1 +|+######****#*###########################################+-+| #|#######*#**#*############################################ | 0.05 +|+######*#**#**##########################################+-+| +|-----------------------------------------------------------| 0 **********#**##********************************************** 0 0.2 0.4 0.6 0.8 1 x Iteration #16 | Current sample size: n = 19 | Volume estimate (plugin): 0.20510 [ref: 0.20510] | Upper-bound on posterior std: 2.7410e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | *** 0.5 +|+#######################****G##############*G*&G**####### 0 +|+##########F############################################### z %|****G*=&#####&****&****#######*G*%#####&**########***#### -0.5 +|+##############%&*G*&###########***&&&G**##########&**&%# -1 +|+################################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.04 +|+ + + + + +-+| 0.035 +|+ + + + + +-+| 0.03 +|+##########F*###########################################+-+| 0.025 +|+##########**###########################################+-+| 0.02 +|+##########**###########################################+-+| 0.015 +|+##########**################*##########################+-+| 0.01 +|+##########***###############*##########################+-+| 0.005 +|-----------------------------------------------------------| 0 **+***********#********************************************** 0 0.2 0.4 0.6 0.8 1 x Iteration #17 | Current sample size: n = 20 | Volume estimate (plugin): 0.20510 [ref: 0.20510] | Upper-bound on posterior std: 1.1166e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | *** 0.5 +|+#######################****G##############*G*&G**####### 0 +|+############################F############################# z %|****G*=&#####&****&****#######*G*%#####&**########***#### -0.5 +|+###############&*G*&###########***&&&G**##########&**&%# -1 +|+################################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.014 +|+ + + + + +-+| 0.012 +|+ + + F + + +-+| 0.01 +|+############################*##########################+-+| 0.008 +|+############################*##########################+-+| #|#############################*########################### | 0.006 +|*############################*##########################+-+| 0.004 +|**###########################*##########################+-+| 0.002 +|-----------------------------------------------------------| 0 **+********************************************************** 0 0.2 0.4 0.6 0.8 1 x Iteration #18 | Current sample size: n = 21 | Volume estimate (plugin): 0.20510 [ref: 0.20510] | Upper-bound on posterior std: 1.1053e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | *** 0.5 +|+#######################****G##############*G*&G**####### 0 +|+########################################################## z %|F***G*=&#####&****&****#######*G*######&**########***#### -0.5 +|+###############&*G*&###########***&&&G**##########&**&%# -1 +|+################################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.005 +|+ + + + + +-+| +|F + + + + +| 0.004 +|**######################################################+-+| 0.003 +|**######################################################+-+| #|#*####################################################### | 0.002 +|+*######################################################+-+| 0.001 +|+*######################################################+-+| +|-----------------------------------------------------------| 0 **+#********************************************************* 0 0.2 0.4 0.6 0.8 1 x Iteration #19 | Current sample size: n = 22 | Volume estimate (plugin): 0.20510 [ref: 0.20510] | Upper-bound on posterior std: 5.0335e-05 [target: 5.000e-04] history = <22x5 stk_dataframe array> : x z vol_estim vol_err nmisclass initial design #1 : 0.000000 0.00000 NaN NaN NaN initial design #2 : 0.333333 -0.43063 NaN NaN NaN initial design #3 : 0.666667 -0.66886 NaN NaN NaN initial design #4 : 1.000000 -1.20558 0.0000 -0.2051 2051 MC point #07450 : 0.104144 -0.13300 0.0000 -0.2051 2051 MC point #03420 : 0.497592 0.26510 0.1024 -0.1027 1711 MC point #07896 : 0.548732 -0.19728 0.1152 -0.0899 1519 MC point #09281 : 0.400411 -0.08813 0.0827 -0.1224 1224 MC point #05659 : 0.431706 0.16916 0.0854 -0.1197 1197 MC point #06569 : 0.513498 0.15922 0.0858 -0.1193 1193 MC point #06840 : 0.429104 0.15024 0.0859 -0.1192 1192 MC point #04572 : 0.823977 0.46049 0.2155 0.0104 662 MC point #02257 : 0.763472 0.42112 0.2171 0.0120 120 MC point #00601 : 0.735358 0.13451 0.2146 0.0095 95 MC point #08674 : 0.864427 0.01099 0.2049 -0.0002 2 MC point #07746 : 0.853848 0.15624 0.2051 0.0000 0 MC point #05636 : 0.736609 0.14951 0.2051 0.0000 0 MC point #03877 : 0.191471 0.12499 0.2051 0.0000 0 MC point #02544 : 0.210845 0.14260 0.2051 0.0000 0 MC point #08093 : 0.224540 0.12026 0.2051 0.0000 0 MC point #09740 : 0.514531 0.15084 0.2051 0.0000 0 MC point #08759 : 0.035155 0.01558 0.2051 0.0000 0 Final result: | Number of evaluations: 4 + 18 = 22. | Volume estimate (plugin): 20.5100% [ref: 20.5100%] 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe05.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe05.m ***** test stk_example_doe05; close all; #=========================# # stk_example_doe05 # #=========================# 'stk_example_doe05' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe05.m STK_EXAMPLE_DOE05 A simple illustration of 1D Bayesian optimization Our goal here is to minimize the one-dimensional function x |--> x * sin (x) over the interval [0; 4 * pi], using noisy evaluations. Evaluations points are chosen sequentially using either AKG criterion (default) or the EQI criterion (set SAMPCRIT_NAME to 'EQI'); Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,11" textcolor rgb " ^ line 0: invalid command | n = 5 + 0 = 5. 15 +|+ ## 10 +|+ ### ### ##%%%%&&%%%###### #|%%%%%&&%%%%#####%%%%%&&%%%%%%%&&&&========&&&&&&&%%###### 5 +|+&&&&#&&&&&&&&&&&&&&&&&&&&&&&&&************G***#&&&&&%### z 0 +|+************G**************G***#####&&&&&&&==*****#&&&&%## -5 +|+&&&&###&&&&&&&&=============&&&&&&&&&%%%###%&===#*****&&&& #|#%%%&&&&&%%%###%%%&&&&&%%%#####################%===&&#****G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+#########+ 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.025 +|+ + + + + + +-+| +| + + + + + *F +| 0.02 +|+####################################################***+-+| 0.015 +|+###################################################**#*+-+| AKG #|####################################################*##*# | 0.01 +|+##################################################**###*-+| 0.005 +|+##################################################*####*-+| +|-----------------------------------------------------------| 0 ******####***********###*****************************#####*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 5 = 10. 15 +|+ ###### 10 +|+ ### ### #%%&&&&&&%%# #|%%%%&&&%%%%#####%%%%%%%%%%%%%&&&&&========&&%############ 5 +|+&&&&#&&&&&&&&&&&&&&&&&&&&&&&&*************G*&&%######### z 0 +|+************G**************G*==##&&&&&&&&&&****&%####### -5 +|+&&&&###&&&&&&&&=============&&&&&&%%%%%####&&=**G&&#####%G #|#%%%&&&&&%%%###%%%&&&&&%%%#####################&=**G******G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.014 +|+ + + + + + F +-+| 0.012 +|+ + + + + + **+-*| 0.01 +|+#####################################################**+-*| 0.008 +|+#####################################################****+| AKG #|######################################################*## | 0.006 +|+#####################################################*#+-+| 0.004 +|+###############################################***#*#*#+-+| 0.002 +|-----------------------------------------------------------| 0 **************************************************+####**#+-+ 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 10 = 15. 20 +|+ 15 +|+ ## ### ##%%%%%%## 10 +|+#%%%%%%%#########%%%%%%%######%&&&&&&&&&&%############## 5 +|+&&&&&&&&&&&%#%&&&&&&&&&&&&&&&&&&======***=G&&########### z &|&=============&&########****G**********##*****&&######### 0 +|+************G***********======&#####&&&&&&&&=***&########% -5 +|+&&&&&&&&&&&&&&&&&&&======&%#%%&&&&&&%%%######&=*GG&&&&&*GG -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.12 +|+ + + + + + +-+| 0.1 +|+ + + + + + F*-+| #|######################################################*** | 0.08 +|+#################################################**##*#**+| AKG0.06 +|+#################################################**##*#+*+| 0.04 +|+################################################*#*##*#+*+| #|#################################################*##*#*##* | 0.02 +|-----------------------------------------------------------| 0 ******####***********####*************************+####*##+-* 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 15 = 20. 20 +|+ 15 +|+ ## ### ##%%%%%%## 10 +|+#%%%%%%%#########%%%%%%%######%&&&&&&&&&&%############## 5 +|+&&&&&&&&&&&%#%&&&&&&&&&&&&&&&&&&=====****=G&&########### z &|&=============&&#########***G**********##*****&&######### 0 +|+************G***********======&####&&&&&&&&&=**&&####### % -5 +|+&&&&&&&&&&&&&&&&&&&======&%#%%&&&&&&%%%#####%&=*GG&%#%G*GG -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######G# + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.1 +|+ + + + + + +-+| +| + + + + + * F* +| 0.08 +|+#################################################**##*#*-+| 0.06 +|+#################################################**##*#*-+| AKG #|#################################################*##*#*##* | 0.04 +|+################################################*##*#*#+*+| 0.02 +|+################################################*##***#+*+| +|-----------------------------------------------------------| 0 *******###************##***************************####*##+-* 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 20 = 25. 20 +|+ 15 +|+ ### ### ##%%%%%%## 10 +|+#%%%%%%%#########%%%%%%%######%&&&&&&&&&&%############## 5 +|+&&&&&&&&&&&%#%&&&&&&&&&&&&&&&&&&=====****=G&&########### z &|&=============&&#########***G*********###*****&&######### 0 +|+************G***********======&####&&&&&&&&&=***&####### # -5 +|+&&&&&&&&&&&&&&&&&&&======&%#%%%&&&&&%%#######&=*GGG%##G&GG -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######G# + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.03 +|+ + + + + + +-+| 0.025 +|+ + + + + + * *F-+| #|###################################################**##** | 0.02 +|+#################################################*#*##**-+| AKG0.015 +|+#################################################*#*##**-+| 0.01 +|+####**#############**############################*#*#*#+*+| #|####****###########*#**###########################*##**##* | 0.005 +|-----------------------------------------------------------| 0 *****#####+*********+#####**************************###**#+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 25 = 30. 20 +|+ 15 +|+ ### ### ##%%%%%%## 10 +|+#%%%%%%%#########%%%%%%%######%&&&&&&&&&&%############## 5 +|+&&&&&&&&&&&%#%&&&&&&&&&&&&&&&&&&=====****=G&&########### z &|&=============&&#########***G*********####****&&######### 0 +|+************G***********======&####&&&&&&&&&=***&####### # -5 +|+&&&&&&&&&&&&&&&&&&&======&%#%%&&&&&&%%#######&=*GGG###G&GG -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######G# + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.03 +|+ + + + + + F **-+| 0.025 +|+ + + + + + ** **-+| #|##################################################*#*##** | 0.02 +|+#################################################*#*##**-+| AKG0.015 +|+#################################################*#*#*#*-+| 0.01 +|+#################################################*#***#*-+| #|####****###########****###########################*##**##* | 0.005 +|-----------------------------------------------------------| 0 ******####+*********+####***************************###*##+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 30 = 35. 20 +|+ ### 15 +|+ ##### #### ##%%%%%%## 10 +|+#%%%%%%%%#######%%%%%%%%######%&&&&&&&&&&%############## 5 +|+&&&&&&&&&&&%#%&&&&&&&&&&&&&&&&&&=====****=G&&########### z &|#=============&&########****G**********###****&&######### 0 +|+************G***********======&#####&&&&&&&&=***&####### # -5 +|+&&&&##&&&&&&&&&&&&&======&%#%%&&&&&&%%%######&=*GGG###G&GG -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######GG + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.02 +|+ + + + + + F +-+| +| + + + + + ** +| 0.015 +|+###################################################**##+-+| #|###################################################*#*##* | AKG 0.01 +|+####**#############**#############################*#*##**+| #|####**#*###########*#**############################*#*#*#* | 0.005 +|+##**###*#########**##**###########################*##**+*+| +|-----------------------------------------------------------| 0 *****#####+*********+#####***************************###*#+-* 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 35 = 40. 20 +|+ ### 15 +|+ ### ##%%%%%%## 10 +|+#################%%%%%%%######%&&&&&&&&&&%############## 5 +|+&&&&&&&&&&%%#%&&&&&&&&&&&&&&&&&#=====****=G&&%########## z *|******G*****==&&#########***G**********###****&&######### 0 +|+=&&&&&&&&&&*G************=====&#####&&&&&&&&=***&####### # -5 +|+%%#####%%%%%&&&&&&#======&%%%%&&&&&&%%%######&=*GGG###G&GG -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+###G##GG + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.01 +|+ + + + + + +-+| +| + +*F* + + + +| 0.008 +|+##################*##*#################################+-+| 0.006 +|+##################*##*################################**-+| AKG #|##################*###*################################** | 0.004 +|+#################*####*###########################****#*-+| 0.002 +|+################**####*###########################*#**#**+| +|-----------------------------------------------------------| 0 *******************#+#####***************************##**#+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 40 = 45. 20 +|+ ##### 15 +|+ ##%%%%%%%%# 10 +|+#############################%&&&&&&&&&&&&############## 5 +|+&&&&&&&&&&&%##############%&&&&#==********G&&########### z *|******G*****==&&&&%###%&&&&&G*******#####&****&&######### 0 +|+=&&&&&&&&&&*G****===&&******==&&&&&&&&&&&%&&=***&####### # -5 +|+%%######%%%%&&&&***G***==&&%#%%%%%%%%%#######&=*GGG###G&GG -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+###G##GG + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.005 +|+ + + + + + F+-+| +| + + + + + ** ** +| 0.004 +|+##################################################**##**-+| 0.003 +|+##################################################**##**-+| AKG #|###################################################*#**#* | 0.002 +|+##################################################*#**#*-+| 0.001 +|+#################################################*##**#*-+| +|-----------------------------------------------------------| 0 ********************+#**#****************************###*#+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 45 = 50. 20 +|+ ##### 15 +|+ ##%%%%%%%%# 10 +|+#############################%&&&&&&&&&&&&############## 5 +|+&&&&&&&&&&&%##############%&&&&#==********G&&########### z *|******G*****==&&&&%###%&&&&&G*******#####&****&&######### 0 +|+=&&&&&&&&&&*G****===&&******==&&&&&&&&&&&%&&=***&####### # -5 +|+%%######%%%%&&&&***G***==&&%#%%%%%%%%%#######&=*GGG###G&GG -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+###G##GG + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.02 +|+ + + + + + +-+| +| + + + + + F * +| 0.015 +|+##################################################*#*#**-+| #|###################################################*#*#** | AKG 0.01 +|+##################################################*#*#*+*+| #|##################################################*##**##* | 0.005 +|+#################################################*##**#+*+| +|-----------------------------------------------------------| 0 ************************************************##***###*#+-* 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 50 = 55. 20 +|+ ##### 15 +|+ ##%%%%%%%%# 10 +|+#############################%&&&&&&&&&&&&%############# 5 +|+&&&&&&&&&&&%##############%&&&&#==********G&&########### z *|******G*****==&&&&%###%&&&&&G*******#####&****&&######### 0 +|+=&&&&&&&&&&*G****===&&******==&&&&&&&&&&&%&&=***&####### # -5 +|+%%######%%%%&&&&***G***==&&%%%%%%%%%%%#######%=*GGG###G&GG -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+###G##GG + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.008 +|+ + + + + + +-+| +| + + + + + F +| 0.006 +|+##################################################**##**-+| #|###################################################**##** | AKG0.004 +|+##################################################*#**#*-+| #|###################################################*#**#* | 0.002 +|+##################################################*#**#*-+| +|-----------------------------------------------------------| 0 *****************************************************##*##+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 55 = 60. 20 +|+ ##### | #%%&&&&&%%# 10 +|+#############################&&&&&#====&&&&%############ &|&&&&&&&&&&&&&&%%########%%&&&&&************G*&&%######### z 0 +|+*****G******G**==&&&&&&&***G**=#####&&&&&&&****&######## &|&&&&%%%%%&&&&&&*****G*****==&&&&&&&&&&%%%####&&**GGG###G#GG -10 +|+##############%&&&&&&&&&%######################%=GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.008 +|+ + + + + + F+-+| +| + + + + + * ** +| 0.006 +|+##################################################*#*#**-+| #|###################################################*#*#** | AKG0.004 +|+##################################################*#**#*-+| #|###################################################*#**#* | 0.002 +|+##################################################*#**#+*+| +|-----------------------------------------------------------| 0 *****************************************************##**#+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 60 = 65. 20 +|+ ##### | #%%&&&&&&%# 10 +|+#############################&&&&&#====&&&&%############ &|&&&&&&&&&&&&&&%%########%%&&&&&************G*&&%######### z 0 +|+*****G******G**==&&&&&&&***G***######&&&&&&****&######## &|&&&&%%%%%&&&&&&*****G*****==&&&&&&&&&&%%%####&&**GGG###G#GG -10 +|+##############%&&&&&&&&&%######################%=GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 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n = 5 + 70 = 75. 20 +|+ ##### | #%%&&&&&&%# 10 +|+#############################&&&&&#====&&&&%############ &|&&&&&&&&&&&&&&%%########%%&&&&&************G*&&%######### z 0 +|+*****G******G**==&&&&&&&***G**=######&&&&&&****&######## &|&&&&%%%%%&&&&&&*****G*****==&&&&&&&&&&%%%####&&**GGGG##G#GG -10 +|+##############%&&&&&&&&&%######################%=GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.006 +|+ + + + + + * F+-+| 0.005 +|+ + + + + + ** **-+| #|####################################################**#** | 0.004 +|+##################################################*#*#**-+| AKG0.003 +|+##################################################*#**#*-+| 0.002 +|+##################################################*#**#*-+| #|###################################################*#**#* | 0.001 +|-----------------------------------------------------------| 0 *****************************************************##**#+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 75 = 80. 20 +|+ ##### | #%%&&&&&&%# 10 +|+#############################&&&&&#====&&&&%############ &|&&&&&&&&&&&&&&%%########%%&&&&&************G*&&%######### z 0 +|+*****G******G**==&&&&&&&***G**=######&&&&&&****&######## &|&&&&%%%%%&&&&&&*****G*****==&&&&&&&&&&%%%####&&**GGGG##G#GG -10 +|+##############%&&&&&&&&&%######################%=GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.0035 +|+ + + + + + F+-+| 0.003 +|+ + + + + + * *+-+| 0.0025 +|+##################################################**#**+-+| 0.002 +|+##################################################**#**+-+| AKG #|###################################################*#**#* | 0.0015 +|+##################################################*#**#*-+| 0.001 +|+##################################################*#**#*-+| 0.0005 +|-----------------------------------------------------------| 0 ********************+#**#****************************##*##*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 80 = 85. 20 +|+ ##### | #%%&&&&&%%# 10 +|+#############################&&&&&#====&&&&%############ &|&&&&&&&&&&&&&&%%########%%&&&&&************G*&&%######### z 0 +|+*****G******G**==&&&&&&&***G**=#####&&&&&&&****&######## &|&&&&%%%%%&&&&&&*****G*****==&&&&&&&&&&%%%####&&**GGGG##G#GG -10 +|+##############%&&&&&&&&&%######################%=GGGGGGG*G +|------------------------------------------------------------ -20 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multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 90 = 95. 20 +|+ ##### | #%%&&&&&%%# 10 +|+#############################&&&&&#====&&&&%############ &|&&&&&&&&&&&&&&%%########%%&&&&&************G*&&%######### z 0 +|+*****G******G**==&&&&&&&***G***######&&&&&&****&######## &|&&&&%%%%%&&&&&&*****G*****==&&&&&&&&&&%%%####&&**GGGG##G#GG -10 +|+##############%&&&&&&&&&%######################%=GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.004 +|+ + + + + + +-+| +| + + + + + * *F +| 0.003 +|+##################################################**#**+-+| #|###################################################**#**# | AKG0.002 +|+##################################################**#**+-+| #|###################################################**#**# | 0.001 +|+##################################################*****+-+| +|-----------------------------------------------------------| 0 ********************+********************************##*##*** 0 2 4 6 8 10 12 x : x z init001 : 0.00000 0.3068 init002 : 3.00000 -0.4455 init003 : 6.00000 1.1228 init004 : 9.00000 4.6978 init005 : 12.00000 -9.2197 xg(186) : 11.15578 -10.4531 xg(178) : 10.67337 -9.0194 xg(200) : 12.00000 -4.9113 xg(180) : 10.79397 -10.8920 xg(170) : 10.19095 -4.3906 xg(188) : 11.27638 -9.9213 xg(200) : 12.00000 -5.1111 xg(173) : 10.37186 -7.4754 xg(196) : 11.75879 -6.8863 xg(173) : 10.37186 -9.3994 xg(191) : 11.45729 -9.1937 xg(191) : 11.45729 -12.9255 xg(176) : 10.55276 -9.7509 xg(191) : 11.45729 -8.0498 xg(175) : 10.49246 -11.7129 xg(191) : 11.45729 -12.3055 xg(182) : 10.91457 -9.5855 xg(177) : 10.61307 -7.2338 xg(192) : 11.51759 -10.2767 xg(177) : 10.61307 -8.2089 xg(192) : 11.51759 -12.5406 xg(178) : 10.67337 -11.1091 xg(192) : 11.51759 -9.0684 xg(178) : 10.67337 -11.5291 xg(191) : 11.45729 -9.0813 xg(177) : 10.61307 -4.2236 xg(179) : 10.73367 -11.1514 xg(192) : 11.51759 -11.5090 xg(179) : 10.73367 -10.1271 xg(192) : 11.51759 -13.8340 xg(181) : 10.85427 -10.0958 xg(181) : 10.85427 -10.1424 xg(181) : 10.85427 -12.9712 xg(181) : 10.85427 -13.3361 xg(026) : 1.50754 2.4567 xg(075) : 4.46231 -6.2406 xg(191) : 11.45729 -6.4986 xg(190) : 11.39698 -11.7427 xg(190) : 11.39698 -10.2809 xg(190) : 11.39698 -12.1749 xg(190) : 11.39698 -10.9440 xg(179) : 10.73367 -10.1191 xg(190) : 11.39698 -11.2781 xg(185) : 11.09548 -10.0113 xg(180) : 10.79397 -11.1130 xg(180) : 10.79397 -9.7051 xg(180) : 10.79397 -13.1041 xg(191) : 11.45729 -10.5133 xg(180) : 10.79397 -13.0767 xg(191) : 11.45729 -8.0809 xg(190) : 11.39698 -15.0238 xg(180) : 10.79397 -9.7129 xg(180) : 10.79397 -10.8031 xg(180) : 10.79397 -11.7489 xg(191) : 11.45729 -9.0286 xg(191) : 11.45729 -11.3695 xg(180) : 10.79397 -10.0588 xg(180) : 10.79397 -13.3438 xg(190) : 11.39698 -9.5987 xg(190) : 11.39698 -8.8791 xg(190) : 11.39698 -11.3904 xg(190) : 11.39698 -9.0396 xg(190) : 11.39698 -9.9988 xg(190) : 11.39698 -15.0988 xg(180) : 10.79397 -10.6449 xg(180) : 10.79397 -8.4483 xg(180) : 10.79397 -10.6549 xg(180) : 10.79397 -7.4939 xg(181) : 10.85427 -12.2901 xg(180) : 10.79397 -13.3133 xg(191) : 11.45729 -7.3262 xg(190) : 11.39698 -5.1834 xg(189) : 11.33668 -13.9498 xg(190) : 11.39698 -11.4331 xg(190) : 11.39698 -9.1033 xg(189) : 11.33668 -9.7237 xg(189) : 11.33668 -11.1848 xg(189) : 11.33668 -11.8205 xg(179) : 10.73367 -8.5566 xg(180) : 10.79397 -10.4140 xg(180) : 10.79397 -14.3315 xg(189) : 11.33668 -9.1715 xg(189) : 11.33668 -6.6991 xg(189) : 11.33668 -11.3831 xg(189) : 11.33668 -13.7969 xg(189) : 11.33668 -11.7819 xg(179) : 10.73367 -10.1471 xg(189) : 11.33668 -11.4145 xg(179) : 10.73367 -12.7195 xg(189) : 11.33668 -9.3363 xg(189) : 11.33668 -9.5874 xg(189) : 11.33668 -9.2492 xg(178) : 10.67337 -6.5637 xg(189) : 11.33668 -10.8666 xg(179) : 10.73367 -8.1356 Number of evaluations: 5 + 95 = 100. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe04.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe04.m ***** test stk_example_doe04; close all; #=========================# # stk_example_doe04 # #=========================# 'stk_example_doe04' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe04.m STK_EXAMPLE_DOE04 Probability of misclassification The upper panel shows posterior means and variances as usual, and the threshold of interest, which is at T = 0.85 (dashed line). The lower panel shows the probability of misclassification as a function of x (blue curve), i.e., the probability that the actual value of the function is not on the same side of the threshold as the prediction (posterior mean). We also plot the expected future probability of misclassification (magenta curve), should a new evaluation be made at x = 3. Note that both probabilities are obtained using stk_pmisclass. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe03.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe03.m ***** test stk_example_doe03; close all; #=========================# # stk_example_doe03 # #=========================# 'stk_example_doe03' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe03.m STK_EXAMPLE_DOE03 A simple illustration of 1D Bayesian optimization Our goal here is to optimize (maximize) the one-dimensional function x |--> x * sin (x) over the interval [0; 4 * pi]. A Matern 5/2 prior with known parameters is used. Evaluations points are chosen sequentially using the Expected Improvement (EI) criterion, starting from an initial design of N0 = 3 points. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. 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+|+*****G******G**&&%####%%%%%&***&&##########****###&&&&%# z #|&&&&&%########&*****G&&&****G*&%#############&=******#&&&% -5 +|+###############&&&&*****=&&##################%===##******G -10 +|+#####################%%%%######################%====&&==== +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.00014 +|+ + + + + + +-+| 0.00012 +|+ + + + F + + +-+| 0.0001 +|+################################**#####################+-+| 8e-05 +|+################################**#####################+-+| #|#################################*#*##################### | 6e-05 +|+################################*#*####################+-+| 4e-05 +|+################################*#*#############***####+-+| 2e-05 +|-----------------------------------------------------------| 0 ***********************************##**************###******* 0 2 4 6 8 10 12 x : x z x0(001) : 0.00000 0.00000 x0(002) : 6.00000 -1.67649 x0(003) : 12.00000 -6.43888 xg(057) : 1.68421 1.67339 xg(099) : 2.94737 0.56886 xg(282) : 8.45113 6.98861 xg(299) : 8.96241 3.99788 xg(268) : 8.03008 7.90589 xg(258) : 7.72932 7.66935 xg(265) : 7.93985 7.91060 xg(266) : 7.96992 7.91642 xg(145) : 4.33083 -4.01937 Number of evaluations: 3 + 9 = 12. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe02.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe02.m ***** test stk_example_doe02; close all; #=========================# # stk_example_doe02 # #=========================# 'stk_example_doe02' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe02.m STK_EXAMPLE_DOE02 "Sequential Maximin" design In this example, a two-dimensional space-filling design is progressively enriched with new points using a "sequential maximin" approach. More precisely, the k-th point X(k, :) is selected to maximize the distance to the set of all previously selected points X(1, :), X(2, :), ..., X(k-1, :). NOTES: * The resulting design is NOT optimal with respect to the maximin criterion (separation distance). * This procedure is not truly a *sequential* design procedure, since the choice of the k-th point X(k, :) does NOT depend on the response at the previously selected locations X(i, :), i < k. REFERENCE [1] Emmanuel Vazquez and Julien Bect, "Sequential search based on kriging: convergence analysis of some algorithms", In: ISI - 58th World Statistics Congress of the International Statistical Institute (ISI'11), Dublin, Ireland, August 21-26, 2011. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign gnuplot> " font ":Bold,10" textcolor rgb " ^ line 0: invalid command |----------------------n = 10, fd = 3.32e-01-------------------------| 1 F|+ + + + F + +-+| +| + + + + +| #|######################F############################################ | #|################################################################### | 0.8 +|+#################################################################+-+| #|############################################################F###### | #|#######F########################################################### | 0.6 +|+#################################################################+-+| #|####################################F############################## | #|################################################################### | 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failed to convert degree sign gnuplot> " font ":Bold,10" textcolor rgb " ^ line 0: invalid command |----------------------n = 19, fd = 2.17e-01-------------------------| 1 F|+ + + + F + +-F| +| + + + + +| #|######################F############################################ | #|################################################################### | 0.8 +|+############################################F####################+-+| #|############################################################F###### | #|#######F##############F############################################ | 0.6 +|+#################################################################+-+| #|####################################F############################## | F|##############F#################################################### | #|################################################################### | 0.4 +|+##########################F####################F#################F-+| #|################################################################### | #|################################################################### | 0.2 +|+#F###############################################################+-+| #|################################################################### | #|##################################################F################ | +|---------------------------------------------------------------------| 0 F-+###########+#############+#######F#####+#############+###########+-F 0 0.2 0.4 0.6 0.8 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe01.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe01.m ***** test stk_example_doe01; close all; #=========================# # stk_example_doe01 # #=========================# 'stk_example_doe01' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe01.m STK_EXAMPLE_DOE01 Examples of two-dimensional designs All designs are constructed on the hyper-rectangle BOX = [0; 2] x [0; 4]. Examples of the following designs are shown: a) Regular grid --> stk_sampling_regulargrid, b) "Maximin" latin hypercube sample --> stk_sampling_maximinlhs, c) RR2-scrambled Halton sequence --> stk_sampling_halton_rr2, d) Uniformly distributed random sample --> stk_sampling_randunif. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb09.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb09.m ***** test stk_example_kb09; close all; #========================# # stk_example_kb09 # #========================# 'stk_example_kb09' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb09.m STK_EXAMPLE_KB09 Generation of sample paths conditioned on noisy observations A Matern Gaussian process model is used, with constant but unknown mean (ordinary kriging) and known covariance parameters. Given noisy observations from the unknown function, a batch of conditioned sample paths is drawn using the "conditioning by kriging" technique (stk_generate_samplepaths function). See also: stk_generate_samplepaths, stk_conditioning, stk_example_kb05 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb08.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb08.m ***** test stk_example_kb08; close all; #========================# # stk_example_kb08 # #========================# 'stk_example_kb08' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb08.m STK_EXAMPLE_KB08 Generation of conditioned sample paths made easy It has been demonstrated, in stk_example_kb05, how to generate conditioned sample paths using unconditioned sample paths and conditioning by kriging. This example shows how to do the same in a more concise way, letting STK take care of the details. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb07.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb07.m ***** test stk_example_kb07; close all; #========================# # stk_example_kb07 # #========================# 'stk_example_kb07' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb07.m STK_EXAMPLE_KB07 Simulation of sample paths from a Matern process Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign |--Matern, nu = 0.5------| |--Matern, nu = 1.5------| 3 +|+ + + + +-+| 4 *|+ + + + +-+| 2 &|+*&*#&& % + + *+==| 3 *|* + + ******+-+| #|******&#%%%#$===&##****=| 2 $|***###########**####**$+| 1 #|**###*&**#%##=#=&######*| 1 #|****#####**#######===$$$| response z*|*###############*######response z#|#####*###&###***%=**==##| -1 *|###%=####*#**####*****&#| 0 +|@@@&&&**#######*#######*| %|@@%%##=##*****%%********| -1 =|========****&&###**#***@| -2 +|------------------------| -2 @|------------------------| -3 +-+###+######+#####+###+%% -3 &&&###+#%%%%%+#@#$$$###+-+ -1 -0.5 0 0.5 1 -1 -0.5 0 0.5 1 |--Matern, nu = 2.5------| |--Matern, nu = 10.0-----| 3 +|+ + + + +-+| 4 +|+ + + + +-+| 2 *|*$$$$$$ + +$$$+-+| 3 +|+ + + $$ +==| #|######$$#####===$$$#*** | #|###############$$$$====*| 1 =|*##***####*******=***#**| 2 +|+#############******$*-*| response z@|**####***####********##response z*|***$#===$*#%%**===%#####| -1 *|*&&&###***&&###***&=##*&| 0 @|@@*****=====*===*###*&%%| *|###&&&&&&###&&########**| #|&###&**######***##*@@&&&| -2 +|------------------------| -1 #|------------------------| -3 +-+###+######+#####+###+-+ -2 +-+###+#****#+##@@@+###+-+ -1 -0.5 0 0.5 1 -1 -0.5 0 0.5 1 input variable x input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb06.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb06.m ***** test stk_example_kb06; close all; #========================# # stk_example_kb06 # #========================# 'stk_example_kb06' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb06.m STK_EXAMPLE_KB06 Ordinary kriging VS kriging with a linear trend The same dataset is analyzed using two variants of kriging. The left panel shows the result of ordinary kriging, in other words, Gaussian process interpolation assuming a constant (but unknown) mean. The right panel shows the result of adding a linear trend in the mean of the Gaussian process. The difference with the left plot is clear in extrapolation: the first predic- tor exhibits a "mean reverting" behaviour, while the second one captures an increasing trend in the data. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb05.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb05.m ***** test stk_example_kb05; close all; #========================# # stk_example_kb05 # #========================# 'stk_example_kb05' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb05.m STK_EXAMPLE_KB05 Generation of conditioned sample paths A Matern Gaussian process model is used, with constant but unknown mean (ordinary kriging) and known covariance parameters. Given noiseless observations from the unknown function, a batch of conditioned sample paths is drawn using the "conditioning by kriging" technique. In short, this means that unconditioned sample path are simulated first (using stk_generate_samplepaths), and then conditioned on the observations by kriging (using stk_conditioning). Note: in this example, for pedagogical purposes, conditioned samplepaths are simulated in two steps: first, unconditioned samplepaths are simulated; second, conditioned samplepaths are obtained using conditioning by kriging. In practice, these two steps can be carried out all at once using stk_generate_samplepath (see, e.g., stk_example_kb09). See also: stk_generate_samplepaths, stk_conditioning, stk_example_kb09 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb03.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb03.m ***** test stk_example_kb03; close all; #========================# # stk_example_kb03 # #========================# 'stk_example_kb03' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb03.m STK_EXAMPLE_KB03 Ordinary kriging in 2D An anisotropic Matern covariance function is used for the Gaussian Process (GP) prior. The parameters of this covariance function (variance, regularity and ranges) are estimated using the Restricted Maximum Likelihood (ReML) method. The mean function of the GP prior is assumed to be constant and unknown. This default choice can be overridden by means of the model.lm property. The function is sampled on a space-filling Latin Hypercube design, and the data is assumed to be noiseless. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. BOX = 2-dimensional hyper-rectangle (stk_hrect object): : x_1 x_2 lower_bounds : -5 0 upper_bounds : 10 15 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb02n.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb02n.m ***** test stk_example_kb02n; close all; #=========================# # stk_example_kb02n # #=========================# 'stk_example_kb02n' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb02n.m STK_EXAMPLE_KB02N Noisy ordinary kriging in 1D with parameter estimation This example shows how to estimate covariance parameters and compute ordinary kriging predictions on a one-dimensional noisy dataset. The model and data are the same as in stk_example_kb02, but this time the parameters of the covariance function and the variance of the noise are jointly estimated using the Restricted Maximum Likelihood (ReML) method. See also: stk_example_kb01n, stk_example_kb02 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.098610 2.302585 0.613435 lognoisevariance = -3.0915 True noise variance = 0.0400 Estimated noise variance = 0.0454 line 0: warning: iconv failed to convert degree sign | True function and noisy observed data 1.5 +|+ | G ***** +--------------------+ #|#######***##G##G**########################|***?***True function| 1 +|+####G**#########**G######################+---G---Observations-+ #|####**#############***######################################### #|###**################**######################################## 0.5 +|+#**##################G*##########################G#***######## G|#**####################**########################****#G**G*##G# #|*G######################**#####################***########***## F1 0 *|+########################**###################**############*** *|##########################**#################**G##############**G #|###########################**G##############**#################** -0.5 +|+#########################G#**#############**################## #|#############################**###########*G################### #|##############################***G######**##################### -1 +|+###############################**#####*G###################### #|#################################***G**######################## +|------------------------------------------------------------------ -1.5 +-+##############+###############+################+############## + -1 -0.5 0 0.5 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb02.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb02.m ***** test stk_example_kb02; close all; #========================# # stk_example_kb02 # #========================# 'stk_example_kb02' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb02.m STK_EXAMPLE_KB02 Ordinary kriging in 1D with parameter estimation This example shows how to estimate covariance parameters and compute ordinary kriging predictions on a one-dimensional noiseless dataset. The model and data are the same as in stk_example_kb01, but this time the parameters of the covariance function are estimated using the Restricted Maximum Likelihood (ReML) method. See also: stk_example_kb01, stk_example_kb02n Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.2108 2.3026 0.7562 lognoisevariance = -Inf line 0: warning: iconv failed to convert degree sign | True function and observed data 1.5 +|+ | ***G* +--------------------+ #|#######***#####***########################|***?***True function| 1 +|+#####**#########***######################+---G---Observations-+ #|####**#############***######################################### #|###**################**######################################## 0.5 +|+#**##################**############################***######## #|#G*####################**########################****##*G**#### #|**######################**#####################G**########***## F1 0 *|+########################**###################**############*** G|##########################**#################**###############** #|###########################**###############**#################** -0.5 +|+###########################**#############**################## #|#############################**###########*#################### #|##############################*G*#######**##################### -1 +|+###############################**#####**###################### #|#################################******######################## +|------------------------------------------------------------------ -1.5 +-+##############+###############+################+############## + -1 -0.5 0 0.5 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb01n.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb01n.m ***** test stk_example_kb01n; close all; #=========================# # stk_example_kb01n # #=========================# 'stk_example_kb01n' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb01n.m STK_EXAMPLE_KB01N Ordinary kriging in 1D, with noisy data This example shows how to compute ordinary kriging predictions on a one-dimensional noisy dataset. The Gaussian Process (GP) prior is the same as in stk_example_kb01. The observation noise is Gaussian and homoscedastic (constant variance). Its variance is assumed to be known. Note that the kriging predictor, which is the posterior mean of the GP, does NOT interpolate the data in this noisy example. See also: stk_example_kb01, stk_example_kb02n Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.6931 1.3863 0.9163 lognoisevariance = -3.2189 line 0: warning: iconv failed to convert degree sign | True function and observed data 1.5 +|+ | G******* +--------------------+ #|#######***##G##G***#######################|***?***True function| 1 +|+####G**##########*G*#####################+---G---Observations-+ #|####**##############**######################################### #|###**################*G###########################G############ 0.5 G|+#**##################**###########################******G###G# #|*G######################**######################***###G##***### 0 +|*########################**####################**##########***# *|##########################**#################**G#############*** #|###########################**###############**#################*G -0.5 +|+#########################G#*G#############**################## * #|#############################**###########*G################### #|##############################**#G#######**#################### -1 +|+##############################***#####*G###################### #|#################################***G***####################### +|------------------------------------------------------------------ -1.5 +-+##############+###############+################+############## + -1 -0.5 0 0.5 1 input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb01.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb01.m ***** test stk_example_kb01; close all; #========================# # stk_example_kb01 # #========================# 'stk_example_kb01' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb01.m STK_EXAMPLE_KB01 Ordinary kriging in 1D, with noiseless data This example shows how to compute ordinary kriging predictions on a one-dimensional noiseless dataset. The word 'ordinary' indicates that the mean function of the GP prior is assumed to be constant and unknown. A Matern covariance function is used for the Gaussian Process (GP) prior. The parameters of this covariance function are assumed to be known (i.e., no parameter estimation is performed here). Note that the kriging predictor, which is the posterior mean of the GP, interpolates the data in this noiseless example. See also: stk_example_kb01n, stk_example_kb02 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.6931 1.3863 0.9163 lognoisevariance = -Inf line 0: warning: iconv failed to convert degree sign | True function and observed data 1.5 +|+ | ****G** +--------------------+ #|#######***#####****#######################|***?***True function| 1 +|+####***##########***#####################+---G---Observations-+ #|####**##############**######################################### #|###**################**######################################## 0.5 +|+#**##################**###########################*****G###### #|*G######################**######################***######***### 0 +|*########################**####################G*##########***# G|##########################**#################***#############*** #|###########################**###############**#################** -0.5 +|+###########################**#############**################## * #|#############################**###########**################### #|##############################*G#########**#################### -1 +|+##############################***#####**###################### #|#################################*******####################### +|------------------------------------------------------------------ -1.5 +-+##############+###############+################+############## + -1 -0.5 0 0.5 1 input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/covfcs/stk_sphcov_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_sphcov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_sphcov_iso ([param; 1.234], x, y); ***** error stk_sphcov_iso (); ***** error stk_sphcov_iso (param); ***** error stk_sphcov_iso (param, x); ***** test stk_sphcov_iso (param, x, y); ***** test stk_sphcov_iso (param, x, y, -1); ***** test stk_sphcov_iso (param, x, y, -1, false); ***** error stk_sphcov_iso (param, x, y, -2); ***** test stk_sphcov_iso (param, x, y, -1); ***** error stk_sphcov_iso (param, x, y, 0); ***** test stk_sphcov_iso (param, x, y, 1); ***** test stk_sphcov_iso (param, x, y, 2); ***** error stk_sphcov_iso (param, x, y, 3); ***** error stk_sphcov_iso (param, x, y, nan); ***** error stk_sphcov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_sphcov_iso (param, x, y); K2 = stk_sphcov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_sphcov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_sphcov_iso (param, x, y); K2 = stk_sphcov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_sphcov_iso (param, x, y, i); dK2 = stk_sphcov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_sphcov_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_sphcov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_sphcov_aniso (); ***** error K0 = stk_sphcov_aniso (param); ***** error K0 = stk_sphcov_aniso (param, x); ***** test K1 = stk_sphcov_aniso (param, x, y); ***** test K2 = stk_sphcov_aniso (param, x, y, -1); ***** test K3 = stk_sphcov_aniso (param, x, y, -1, false); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_sphcov_aniso (param, u, v, -1); K2 = stk_sphcov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); assert (isequal (K1, K2)); ***** error stk_sphcov_aniso (param, x, y, -2); ***** test stk_sphcov_aniso (param, x, y, -1); ***** error stk_sphcov_aniso (param, x, y, 0); ***** test stk_sphcov_aniso (param, x, y, 1); ***** test stk_sphcov_aniso (param, x, y, 2); ***** error stk_sphcov_aniso (param, x, y, 3); ***** error stk_sphcov_aniso (param, x, y, nan); ***** error stk_sphcov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_sphcov_aniso (param, x, y); K2 = stk_sphcov_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_sphcov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_sphcov_aniso (param, x, y); K2 = stk_sphcov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_sphcov_aniso (param, x, y, i); dK2 = stk_sphcov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 20 tests, 20 passed, 0 known failure, 0 skipped [inst/covfcs/stk_noisecov.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_noisecov.m ***** shared ni, lognoisevariance, diff ni = 5; lognoisevariance = 0.0; diff = -1; ***** error K = stk_noisecov (); ***** error K = stk_noisecov (ni); ***** test K = stk_noisecov (ni, lognoisevariance); ***** test K = stk_noisecov (ni, lognoisevariance, diff); ***** test K = stk_noisecov (ni, lognoisevariance, diff, true); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 1.5; 2.9]); x = stk_sampling_randunif(5, dim); y = stk_sampling_randunif(5, dim); ***** error K = stk_materncov_iso ([param; 1.234], x, y); ***** error stk_materncov_iso(); ***** error stk_materncov_iso(param); ***** error stk_materncov_iso(param, x); ***** test stk_materncov_iso(param, x, y); ***** test stk_materncov_iso(param, x, y, -1); ***** test stk_materncov_iso(param, x, y, -1, false); ***** error stk_materncov_iso(param, x, y, -2); ***** test stk_materncov_iso(param, x, y, -1); ***** error stk_materncov_iso(param, x, y, 0); ***** test stk_materncov_iso(param, x, y, 1); ***** test stk_materncov_iso(param, x, y, 2); ***** test stk_materncov_iso(param, x, y, 3); ***** error stk_materncov_iso(param, x, y, 4); ***** error stk_materncov_iso(param, x, y, nan); ***** error stk_materncov_iso(param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 1.5; 2.9]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov_iso (param, x, y); K2 = stk_materncov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:3, dK = stk_materncov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif(n, dim); y = stk_sampling_randunif(n, dim); K1 = stk_materncov_iso(param, x, y); K2 = stk_materncov_iso(param, x, y, -1, true); assert(isequal(size(K1), [n n])); assert(stk_isequal_tolabs(K2, diag(K1))); for i = 1:3, dK1 = stk_materncov_iso(param, x, y, i); dK2 = stk_materncov_iso(param, x, y, i, true); assert(isequal(size(dK1), [n n])); assert(stk_isequal_tolabs(dK2, diag(dK1))); end 19 tests, 19 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov_aniso.m ***** shared param, x, y dim = 1; param = log ([1.0; 1.5; 2.8]); x = stk_sampling_randunif(5, dim); y = stk_sampling_randunif(5, dim); ***** error stk_materncov_aniso(); ***** error stk_materncov_aniso(param); ***** error stk_materncov_aniso(param, x); ***** test stk_materncov_aniso(param, x, y); ***** test stk_materncov_aniso(param, x, y, -1); ***** test stk_materncov_aniso(param, x, y, -1, false); ***** error stk_materncov_aniso(param, x, y, -2); ***** test stk_materncov_aniso(param, x, y, -1); ***** error stk_materncov_aniso(param, x, y, 0); ***** test stk_materncov_aniso(param, x, y, 1); ***** test stk_materncov_aniso(param, x, y, 2); ***** test stk_materncov_aniso(param, x, y, 3); ***** error stk_materncov_aniso(param, x, y, 4); ***** error stk_materncov_aniso(param, x, y, nan); ***** error stk_materncov_aniso(param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 1.5; 2.8; 2.7; 2.9]); nx = 4; ny = 10; x = stk_sampling_randunif(nx, dim); y = stk_sampling_randunif(ny, dim); ***** test K1 = stk_materncov_aniso(param, x, y); K2 = stk_materncov_aniso(param, x, y, -1); assert(isequal(size(K1), [nx ny])); assert(stk_isequal_tolabs(K1, K2)); ***** test for i = 1:(dim+2), dK = stk_materncov_aniso(param, x, y, i); assert(isequal(size(dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif(n, dim); y = stk_sampling_randunif(n, dim); K1 = stk_materncov_aniso(param, x, y); K2 = stk_materncov_aniso(param, x, y, -1, true); assert(isequal(size(K1), [n n])); assert(stk_isequal_tolabs(K2, diag(K1))); for i = 1:(dim+2), dK1 = stk_materncov_aniso(param, x, y, i); dK2 = stk_materncov_aniso(param, x, y, i, true); assert(isequal(size(dK1), [n n])); assert(stk_isequal_tolabs(dK2, diag(dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov52_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov52_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_materncov52_iso ([param; 1.234], x, y); ***** error stk_materncov52_iso (); ***** error stk_materncov52_iso (param); ***** error stk_materncov52_iso (param, x); ***** test stk_materncov52_iso (param, x, y); ***** test stk_materncov52_iso (param, x, y, -1); ***** test stk_materncov52_iso (param, x, y, -1, false); ***** error stk_materncov52_iso (param, x, y, -2); ***** test stk_materncov52_iso (param, x, y, -1); ***** error stk_materncov52_iso (param, x, y, 0); ***** test stk_materncov52_iso (param, x, y, 1); ***** test stk_materncov52_iso (param, x, y, 2); ***** error stk_materncov52_iso (param, x, y, 3); ***** error stk_materncov52_iso (param, x, y, nan); ***** error stk_materncov52_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov52_iso (param, x, y); K2 = stk_materncov52_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_materncov52_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov52_iso (param, x, y); K2 = stk_materncov52_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_materncov52_iso (param, x, y, i); dK2 = stk_materncov52_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov52_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov52_aniso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_materncov52_aniso (); ***** error stk_materncov52_aniso (param); ***** error stk_materncov52_aniso (param, x); ***** test stk_materncov52_aniso (param, x, y); ***** test stk_materncov52_aniso (param, x, y, -1); ***** test stk_materncov52_aniso (param, x, y, -1, false); ***** error stk_materncov52_aniso (param, x, y, -2); ***** test stk_materncov52_aniso (param, x, y, -1); ***** error stk_materncov52_aniso (param, x, y, 0); ***** test stk_materncov52_aniso (param, x, y, 1); ***** test stk_materncov52_aniso (param, x, y, 2); ***** error stk_materncov52_aniso (param, x, y, 3); ***** error stk_materncov52_aniso (param, x, y, nan); ***** error stk_materncov52_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov52_aniso (param, x, y); K2 = stk_materncov52_aniso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_materncov52_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov52_aniso (param, x, y); K2 = stk_materncov52_aniso(param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_materncov52_aniso (param, x, y, i); dK2 = stk_materncov52_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 17 tests, 17 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov32_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov32_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_materncov32_iso ([param; 1.234], x, y); ***** error stk_materncov32_iso (); ***** error stk_materncov32_iso (param); ***** error stk_materncov32_iso (param, x); ***** test stk_materncov32_iso (param, x, y); ***** test stk_materncov32_iso (param, x, y, -1); ***** test stk_materncov32_iso (param, x, y, -1, false); ***** error stk_materncov32_iso (param, x, y, -2); ***** test stk_materncov32_iso (param, x, y, -1); ***** error stk_materncov32_iso (param, x, y, 0); ***** test stk_materncov32_iso (param, x, y, 1); ***** test stk_materncov32_iso (param, x, y, 2); ***** error stk_materncov32_iso (param, x, y, 3); ***** error stk_materncov32_iso (param, x, y, nan); ***** error stk_materncov32_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov32_iso (param, x, y); K2 = stk_materncov32_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_materncov32_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov32_iso (param, x, y); K2 = stk_materncov32_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_materncov32_iso (param, x, y, i); dK2 = stk_materncov32_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov32_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov32_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_materncov32_aniso (); ***** error K0 = stk_materncov32_aniso (param); ***** error K0 = stk_materncov32_aniso (param, x); ***** test K1 = stk_materncov32_aniso (param, x, y); ***** test K2 = stk_materncov32_aniso (param, x, y, -1); ***** test K3 = stk_materncov32_aniso (param, x, y, -1, false); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_materncov32_aniso (param, u, v, -1); K2 = stk_materncov32_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); assert (isequal (K1, K2)); ***** error stk_materncov32_aniso (param, x, y, -2); ***** test stk_materncov32_aniso (param, x, y, -1); ***** error stk_materncov32_aniso (param, x, y, 0); ***** test stk_materncov32_aniso (param, x, y, 1); ***** test stk_materncov32_aniso (param, x, y, 2); ***** error stk_materncov32_aniso (param, x, y, 3); ***** error stk_materncov32_aniso (param, x, y, nan); ***** error stk_materncov32_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov32_aniso (param, x, y); K2 = stk_materncov32_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_materncov32_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov32_aniso (param, x, y); K2 = stk_materncov32_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_materncov32_aniso (param, x, y, i); dK2 = stk_materncov32_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 20 tests, 20 passed, 0 known failure, 0 skipped [inst/covfcs/stk_gausscov_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_gausscov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_gausscov_iso ([param; 1.234], x, y); ***** error stk_gausscov_iso (); ***** error stk_gausscov_iso (param); ***** error stk_gausscov_iso (param, x); ***** test stk_gausscov_iso (param, x, y); ***** test stk_gausscov_iso (param, x, y, -1); ***** test stk_gausscov_iso (param, x, y, -1, false); ***** error stk_gausscov_iso (param, x, y, -2); ***** test stk_gausscov_iso (param, x, y, -1); ***** error stk_gausscov_iso (param, x, y, 0); ***** test stk_gausscov_iso (param, x, y, 1); ***** test stk_gausscov_iso (param, x, y, 2); ***** error stk_gausscov_iso (param, x, y, 3); ***** error stk_gausscov_iso (param, x, y, nan); ***** error stk_gausscov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_gausscov_iso (param, x, y); K2 = stk_gausscov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_gausscov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_gausscov_iso (param, x, y); K2 = stk_gausscov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_gausscov_iso (param, x, y, i); dK2 = stk_gausscov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_gausscov_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_gausscov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_gausscov_aniso (); ***** error K0 = stk_gausscov_aniso (param); ***** error K0 = stk_gausscov_aniso (param, x); ***** test K1 = stk_gausscov_aniso (param, x, y); ***** test K2 = stk_gausscov_aniso (param, x, y, -1); ***** test K3 = stk_gausscov_aniso (param, x, y, -1, false); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_gausscov_aniso (param, u, v, -1); K2 = stk_gausscov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); ***** error stk_gausscov_aniso (param, x, y, -2); ***** test stk_gausscov_aniso (param, x, y, -1); ***** error stk_gausscov_aniso (param, x, y, 0); ***** test stk_gausscov_aniso (param, x, y, 1); ***** test stk_gausscov_aniso (param, x, y, 2); ***** error stk_gausscov_aniso (param, x, y, 3); ***** error stk_gausscov_aniso (param, x, y, nan); ***** error stk_gausscov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_gausscov_aniso (param, x, y); K2 = stk_gausscov_aniso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_gausscov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_gausscov_aniso (param, x, y); K2 = stk_gausscov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_gausscov_aniso (param, x, y, i); dK2 = stk_gausscov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 20 tests, 20 passed, 0 known failure, 0 skipped [inst/covfcs/stk_expcov_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_expcov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_expcov_iso ([param; 1.234], x, y); ***** error stk_expcov_iso (); ***** error stk_expcov_iso (param); ***** error stk_expcov_iso (param, x); ***** test stk_expcov_iso (param, x, y); ***** test stk_expcov_iso (param, x, y, -1); ***** test stk_expcov_iso (param, x, y, -1, false); ***** error stk_expcov_iso (param, x, y, -2); ***** test stk_expcov_iso (param, x, y, -1); ***** error stk_expcov_iso (param, x, y, 0); ***** test stk_expcov_iso (param, x, y, 1); ***** test stk_expcov_iso (param, x, y, 2); ***** error stk_expcov_iso (param, x, y, 3); ***** error stk_expcov_iso (param, x, y, nan); ***** error stk_expcov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_expcov_iso (param, x, y); K2 = stk_expcov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_expcov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_expcov_iso (param, x, y); K2 = stk_expcov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_expcov_iso (param, x, y, i); dK2 = stk_expcov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_expcov_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_expcov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_expcov_aniso (); ***** error K0 = stk_expcov_aniso (param); ***** error K0 = stk_expcov_aniso (param, x); ***** test K1 = stk_expcov_aniso (param, x, y); ***** test K2 = stk_expcov_aniso (param, x, y, -1); ***** test K3 = stk_expcov_aniso (param, x, y, -1, false); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_expcov_aniso (param, u, v, -1); K2 = stk_expcov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); ***** error stk_expcov_aniso (param, x, y, -2); ***** test stk_expcov_aniso (param, x, y, -1); ***** error stk_expcov_aniso (param, x, y, 0); ***** test stk_expcov_aniso (param, x, y, 1); ***** test stk_expcov_aniso (param, x, y, 2); ***** error stk_expcov_aniso (param, x, y, 3); ***** error stk_expcov_aniso (param, x, y, nan); ***** error stk_expcov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_expcov_aniso (param, x, y); K2 = stk_expcov_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_expcov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_expcov_aniso (param, x, y); K2 = stk_expcov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_expcov_aniso (param, x, y, i); dK2 = stk_expcov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 20 tests, 20 passed, 0 known failure, 0 skipped [inst/covfcs/stk_discretecov.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_discretecov.m ***** shared model, model2, x0 n0 = 20; n1 = 10; dim = 4; x0 = stk_sampling_randunif (n0, dim); x1 = stk_sampling_randunif (n1, dim); model = stk_model (@stk_materncov52_aniso, dim); model.lm = stk_lm_affine (); model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); ***** test % without noise, pairwise = false model.lognoisevariance = - inf; model2 = stk_model (@stk_discretecov, model, x0); idx = [1 4 9]; [K1, P1] = stk_make_matcov (model, x0(idx, :)); [K2, P2] = stk_make_matcov (model2, idx'); assert (stk_isequal_tolrel (K1, K2)); assert (stk_isequal_tolrel (P1, P2)); ***** test % without noise, pairwise = true K1 = stk_make_matcov (model, x0([2 5 6], :), [], true); K2 = stk_make_matcov (model2, [2 5 6]', [], true); assert (stk_isequal_tolrel (K1, K2)); ***** test % with noise, pairwise = false model.lognoisevariance = log (0.01); model2 = stk_model (@stk_discretecov, model, x0); idx = [1 4 9]; [K1, P1] = stk_make_matcov (model, x0(idx, :)); [K2, P2] = stk_make_matcov (model2, idx'); assert (stk_isequal_tolrel (K1, K2)); assert (stk_isequal_tolrel (P1, P2)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_spherical.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_spherical.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_spherical (); ***** test stk_rbf_spherical (h); ***** test stk_rbf_spherical (h, diff); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_spherical (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% check derivative numerically h = [-1 -0.5 -0.1 0.1 0.5 1]; delta = 1e-9; d1 = (stk_rbf_spherical (h + delta) - stk_rbf_spherical (h)) / delta; d2 = stk_rbf_spherical (h, 1); assert (stk_isequal_tolabs (d1, d2, 1e-4)); ***** assert (stk_rbf_spherical (inf) == 0) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern52.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_matern52.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_matern52 (); ***** test stk_rbf_matern52 (h); ***** test stk_rbf_matern52 (h, diff); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_matern52 (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (5/2, h); y = stk_rbf_matern52 (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (5/2, h, 2); y = stk_rbf_matern52 (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_matern52 (inf) == 0) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern32.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_matern32.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_matern32 (); ***** test stk_rbf_matern32 (h); ***** test stk_rbf_matern32 (h, diff); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_matern32 (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (3/2, h); y = stk_rbf_matern32 (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (3/2, h, 2); y = stk_rbf_matern32 (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_matern32 (inf) == 0) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_matern.m ***** shared nu, h, diff nu = 1.0; h = 1.0; diff = -1; ***** error stk_rbf_matern (); ***** error stk_rbf_matern (nu); ***** test stk_rbf_matern (nu, h); ***** test stk_rbf_matern (nu, h, diff); ***** test %% h = 0.0 => correlation = 1.0 for nu = 0.1:0.2:5.0, x = stk_rbf_matern (nu, 0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); end 5 tests, 5 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_gauss.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_gauss.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_gauss (); ***** test stk_rbf_gauss (h); ***** test stk_rbf_gauss (h, diff); ***** test % h = 0.0 => correlation = 1.0 x = stk_rbf_gauss (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_exponential.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_exponential.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_exponential (); ***** test stk_rbf_exponential (h); ***** test stk_rbf_exponential (h, diff); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_exponential (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% check derivative numerically h = [-1 -0.5 -0.1 0.1 0.5 1]; delta = 1e-9; d1 = (stk_rbf_exponential (h + delta) - stk_rbf_exponential (h)) / delta; d2 = stk_rbf_exponential (h, 1); assert (stk_isequal_tolabs (d1, d2, 1e-4)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (1/2, h); y = stk_rbf_exponential (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (1/2, h, 2); y = stk_rbf_exponential (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_exponential (inf) == 0) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/core/stk_predict_leaveoneout.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_predict_leaveoneout.m ***** shared n, x_obs, z_obs, model n = 20; x_obs = stk_sampling_regulargrid (n, 1, [0; 2*pi]); z_obs = stk_feval (@sin, x_obs); model = stk_model (@stk_materncov32_iso); model.param = log ([1; 5]); ***** test % one output loo_pred = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); ***** test % two outputs [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); assert (isequal (size (loo_res), [n 2])); assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); assert (all (isfinite (loo_res(:)))); ***** test % heteroscedastic noise case model.lognoisevariance = (1 + rand (n, 1)) * 1e-6; [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); assert (isequal (size (loo_res), [n 2])); assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); assert (all (isfinite (loo_res(:)))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/core/stk_predict.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_predict.m ***** shared n, m, model, x0, x_obs, z_obs, x_prd, y_prd1, idx_obs, idx_prd n = 10; % number of observations m = n + 1; % number of predictions d = 1; % dimension of the input space x0 = stk_sampling_regulargrid(n+m, d, [0; pi]); idx_obs = (2:2:(n+m-1))'; idx_prd = (1:2:(n+m))'; x_obs = x0(idx_obs); z_obs = sin (double (x_obs)); x_prd = x0(idx_prd); model = stk_model (@stk_materncov32_iso); model.param = log ([1.0; 2.1]); ***** error y_prd1 = stk_predict (); ***** error y_prd1 = stk_predict (model); ***** test y_prd1 = stk_predict (model, x_prd); ***** error y_prd1 = stk_predict (model, data, x_prd); ***** test y_prd1 = stk_predict (model, x_obs, z_obs, x_prd); ***** error y_prd1 = stk_predict (model, [x_obs; x_obs], [z_obs; z_obs], x_prd); ***** test % nargout = 2 [y_prd1, lambda] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); ***** test % nargout = 2, compute only variances [y_prd1, lambda] = stk_predict (model, x_obs, [], x_prd); assert (isequal (size (lambda), [n m])); assert (all (isnan (y_prd1.mean))); ***** test % nargout = 3 [y_prd1, lambda, mu] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging ***** test % nargout = 4 [y_prd1, lambda, mu, K] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging assert (isequal (size (K), [m m])); ***** test % predict on large set of locations x_prd = stk_sampling_regulargrid (1e5, 1, [0; pi]); y_prd = stk_predict (model, x_obs, z_obs, x_prd); ***** test % predict on an observation point % https://sourceforge.net/p/kriging/tickets/49/ [zp, lambda] = stk_predict (model, x_obs, z_obs, x_obs(4)); assert (isequal (z_obs(4), zp.mean)) assert (isequal (zp.var, 0)) lambda_ref = zeros (n, 1); lambda_ref(4) = 1; assert (isequal (lambda, lambda_ref)) 12 tests, 12 passed, 0 known failure, 0 skipped [inst/core/stk_model_update.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_model_update.m ***** test x1 = (linspace (0, 1, 15))'; z1 = sin (x1); x2 = (linspace (2, 3, 15))'; z2 = sin (x2); xt = (linspace (1, 2, 15))'; zt = sin (xt); % Prior model M0 = stk_model (@stk_materncov32_iso); M0.param = log ([1.0; 2.1]); M1 = stk_model_update (M0, x1, z1); M1 = stk_model_update (M1, x2, z2); % this calls @stk_model_gpposterior/... zp1 = stk_predict (M1, xt); M2 = stk_model_gpposterior (M0, [x1; x2], [z1; z2]); zp2 = stk_predict (M2, xt); assert (stk_isequal_tolabs (double (zp2 - zp1), zeros (15, 2), 1e-10)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/core/stk_make_matcov.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_make_matcov.m ***** shared model, model2, x0, x1, n0, n1, d, Ka, Kb, Kc, Pa, Pb, Pc n0 = 20; n1 = 10; d = 4; model = stk_model (@stk_materncov52_aniso, d); model.lm = stk_lm_affine; model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); model2 = model; model2.lognoisevariance = log(0.01); x0 = stk_sampling_randunif (n0, d); x1 = stk_sampling_randunif (n1, d); ***** error [KK, PP] = stk_make_matcov (); ***** error [KK, PP] = stk_make_matcov (model); ***** test [Ka, Pa] = stk_make_matcov (model, x0); % (1) ***** test [Kb, Pb] = stk_make_matcov (model, x0, x0); % (2) ***** test [Kc, Pc] = stk_make_matcov (model, x0, x1); % (3) ***** error [KK, PP] = stk_make_matcov (model, x0, x1, pi); ***** assert (isequal (size (Ka), [n0 n0])); ***** assert (isequal (size (Kb), [n0 n0])); ***** assert (isequal (size (Kc), [n0 n1])); ***** assert (isequal (size (Pa), [n0 d + 1])); ***** assert (isequal (size (Pb), [n0 d + 1])); ***** assert (isequal (size (Pc), [n0 d + 1])); ***** assert (isequal (Kb, Ka)); ***** test [Ka, Pa] = stk_make_matcov (model2, x0); % (1') ***** test [Kb, Pb] = stk_make_matcov (model2, x0, x0); % (2') ***** error assert (isequal (Kb, Ka)); ***** assert (isequal (Pa, Pb)); ***** assert (isequal (Pa, Pc)); 18 tests, 18 passed, 0 known failure, 0 skipped [inst/core/stk_cholcov.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_cholcov.m ***** shared Q, K, L, U, epsi Q = 0.25 * hadamard(4); ***** test K = Q * diag ([1, 0.1, 0.01, 1e-7]) * Q'; [U, epsi] = stk_cholcov (K); ***** assert (istriu (U)) ***** assert (epsi == 0) ***** test K = Q * diag ([1, 0.1, 0.01, 1e-7]) * Q'; [L, epsi] = stk_cholcov (K, 'lower'); ***** assert (istril (L)) ***** assert (epsi == 0) ***** test K = Q * diag ([1, 0.1, 0.01, -1e-7]) * Q'; [U, epsi] = stk_cholcov (K); ***** assert (istriu (U)) ***** assert (epsi > 0) ***** test K = Q * diag ([1, 0.1, 0.01, -1e-7]) * Q'; [L, epsi] = stk_cholcov (K, 'lower'); ***** assert (istril (L)) ***** assert (epsi > 0) 12 tests, 12 passed, 0 known failure, 0 skipped [inst/core/@stk_kreq_qr/stk_kreq_qr.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/@stk_kreq_qr/stk_kreq_qr.m ***** test stk_test_class ('stk_kreq_qr') 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_rescale.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_rescale.m ***** shared x x = rand (10, 4); y = stk_rescale (x, [], []); assert (stk_isequal_tolabs (x, y)); ***** test y = stk_rescale(0.5, [], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 1], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 2], []); assert (stk_isequal_tolabs (y, 0.25)); ***** test y = stk_rescale (0.5, [0; 2], [0; 1]); assert (stk_isequal_tolabs (y, 0.25)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_normalize.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_normalize.m ***** shared x, box, y1, y2, y3, y4 n = 5; box = [2; 3]; x = box(1) + diff (box) * rand (n, 1); ***** error y1 = stk_normalize (); ***** test y2 = stk_normalize (x); ***** test y3 = stk_normalize (x, box); ***** test assert (~ any ((y2 < -10 * eps) | (y2 > 1 + 10 * eps))); ***** test assert (~ any ((y3 < -10 * eps) | (y3 > 1 + 10 * eps))); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_length.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_length.m ***** assert (isequal (stk_length ([1 2; 3 4; 5 6]), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_get_sample_size.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_get_sample_size.m ***** assert (stk_get_sample_size ([1 2; 3 4; 5 6]) == 3); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_feval.m ***** shared f, xt f = @(x)(- (0.7 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); xt = stk_sampling_regulargrid (20, 1, [0; 1]); ***** error yt = stk_feval (); ***** error yt = stk_feval (f); ***** test yt = stk_feval (f, xt); ***** test yt = stk_feval (f, xt, false); ***** test yt = stk_feval (f, xt, false, false); ***** test yt = stk_feval (f, xt, false, false, false); ***** test N = 15; xt = stk_sampling_regulargrid (N, 1, [0; 1]); yt = stk_feval (f, xt); assert (isequal (size (yt), [N 1])); ***** test x = stk_dataframe ([1; 2; 3], {'x'}, {'a'; 'b'; 'c'}); y = stk_feval (@(u)(2 * u), x); assert (isequal (y.data, [2; 4; 6])); assert (isequal (y.rownames, {'a'; 'b'; 'c'})); ***** shared t, z_ref, n n = 20; t = stk_sampling_regulargrid (n, 1, [0; 2*pi]); z_ref = [sin(t.data) cos(t.data)]; ***** test t.colnames = {'time'}; z = stk_feval ({@sin, @cos}, t); assert (isa (z, 'stk_dataframe')); assert (isequal (z.data, z_ref)); ***** test F = @(x)([sin(x) cos(x)]); z = stk_feval (F, t); assert (isequal (z.data, z_ref)); ***** test t = stk_sampling_regulargrid (n, 1, [0; 2*pi]); F = {'sin', 'cos'}; z = stk_feval (F, t); assert (isequal (z.data, [sin(t.data) cos(t.data)])); assert (isequal (z.colnames, {'sin' 'cos'})); ***** test % vectorized F = @(t)([sin(t) cos(t)]); G = @(t)(0.365 * t.^2 + (cos ((t - 1).*(t - 2) + 0.579033))); z = stk_feval ({@sin, @cos, G, F, 'tan'}, t); assert (isequal (z.colnames, {'sin' 'cos' 'F3' 'F4_1' 'F4_2' 'tan'})); ***** test % not vectorized F = @(t)([sin(t) cos(t)]); G = @(t)(0.365 * t^2 + (cos ((t - 1)*(t - 2) + 0.579033))); z = stk_feval ({@sin, @cos, G, F, 'tan'}, t, [], [], false); assert (isequal (z.colnames, {'sin' 'cos' 'F3' 'F4_1' 'F4_2' 'tan'})); 13 tests, 13 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_boundingbox.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = [0 3 2; 1 4 1; 7 0 2]; ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** assert (isequal (y.data, [0 0 1; 7 4 2])); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/vertcat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/vertcat.m ***** shared d, x, y d = 10; x = stk_hrect (d); y = double (x); ***** test z = vertcat (x, x); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); ***** test z = vertcat (x, y); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); ***** test z = vertcat (y, x); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/subsref.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/subsref.m ***** test B = stk_hrect ([0 0 0 0; 1 2 3 4]); B = B(:, [1 3 4]); assert (strcmp (class (B), 'stk_hrect')); assert (isequal (double (B), [0 0 0; 1 3 4])); ***** test B = stk_hrect ([0 0 0 0; 1 2 3 4]); B = B(1, :); assert (strcmp (class (B), 'stk_dataframe')); assert (isequal (double (B), [0 0 0 0])); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_rescale.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_rescale.m ***** shared x x = rand (10, 4); y = stk_rescale (x, [], []); assert (stk_isequal_tolabs (x, y)); ***** test y = stk_rescale(0.5, [], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 1], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 2], []); assert (stk_isequal_tolabs (y, 0.25)); ***** test y = stk_rescale (0.5, [0; 2], [0; 1]); assert (stk_isequal_tolabs (y, 0.25)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_normalize.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_normalize.m ***** shared x, box, y1, y2, y3, y4 n = 5; box = stk_hrect ([2; 3]); x = 2 + rand (n, 1); ***** error y1 = stk_normalize (); ***** test y2 = stk_normalize (x); ***** test y3 = stk_normalize (x, box); ***** test assert (~ any ((y2 < -10 * eps) | (y2 > 1 + 10 * eps))); ***** test assert (~ any ((y3 < -10 * eps) | (y3 > 1 + 10 * eps))); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_hrect.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_hrect.m ***** test stk_test_class ('stk_hrect') ***** shared dom ***** test dom = stk_hrect ([-1; 1], {'x'}); ***** assert (isequal (dom.colnames, {'x'})) ***** assert (isequal (dom.rownames, {'lower_bounds'; 'upper_bounds'})) ***** assert (isequal (dom.data, [-1; 1])) 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_dataframe.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_dataframe.m ***** shared x, cn, rn, y, cn2, rn2 cn = {'x' 'y'}; rn = {'lower_bounds'; 'upper_bounds'}; x = stk_hrect ([0 0; 1 1], cn); cn2 = {'xx' 'yy'}; rn2 = {'aa'; 'bb'}; ***** test y = stk_dataframe (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, [], rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, {}, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, {})) ***** assert (isequal (y.rownames, rn2)) 20 tests, 20 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_boundingbox.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_boundingbox.m ***** shared x, y lb = rand (1, 5); ub = lb + 1; cn = {'a', 'b', 'c', 'd', 'e'}; x = stk_hrect ([lb; ub], cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** assert (isequal (y, x)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/ismember.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/ismember.m ***** shared n, box n = 5; box = stk_hrect (n); ***** assert (ismember (box(1, :), box)) ***** assert (ismember (box(2, :), box)) ***** assert (ismember (.5 * ones (1, 5), box)) ***** assert (~ ismember (box(1, :) - 1, box)) ***** assert (~ ismember (box(2, :) + 1, box)) ***** test y = double (box); y = [y; y + 2]; assert (isequal (ismember (y, box), [1; 1; 0; 0])) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/horzcat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/horzcat.m ***** shared d, x1, x2, x3 d = 10; x1 = stk_hrect (d); x2 = double (x1); x3 = [1:d; 0:(d-1)]; % illegal bounds ***** test y1 = horzcat (x1, x1); assert (isequal (size (y1), [2 2*d])); assert (strcmp (class (y1), 'stk_hrect')); ***** test y2 = horzcat (x1, x2); assert (isequal (size (y2), [2 2*d])); assert (strcmp (class (y2), 'stk_hrect')); ***** test y3 = horzcat (x2, x1); assert (isequal (size (y3), [2 2*d])); assert (strcmp (class (y3), 'stk_hrect')); ***** test lastwarn ('') y4 = horzcat (x1, x3); assert (isequal (size (y4), [2 2*d])); assert (strcmp (class (y4), 'stk_dataframe')); [warn_msg, warn_id] = lastwarn (); assert (strcmp (warn_id, 'STK:stk_hrect:horzcat:IllegalBounds')) warning: Illegal bounds, the result is not an stk_hrect object. warning: called from horzcat at line 47 column 9 __test__ at line 4 column 5 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 1198 column 31 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/uminus.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/uminus.m ***** test x = stk_factorialdesign ({1:3, 1:2}); y = stk_factorialdesign ({-(1:3), -(1:2)}); assert (isequal (-x, y)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_rescale.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_rescale.m ***** test x = stk_factorialdesign ({[1 2], [5 6]}); y = stk_factorialdesign ({[0 3], [0 3]}); z = stk_rescale (x, [1 5; 2 6], [0 0; 3 3]); assert (stk_isequal_tolabs (y, z)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_normalize.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_normalize.m ***** test x = stk_factorialdesign ({[1 2], [5 6]}); y = stk_factorialdesign ({[0 1], [0 1]}); assert (stk_isequal_tolabs (stk_normalize (x), y)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_factorialdesign.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_factorialdesign.m ***** test stk_test_class ('stk_factorialdesign') ***** test % constructor with two factors + column names x = stk_factorialdesign ({[0 1], [1 2 3]}, {'a', 'b'}); assert (isequal(x.colnames, {'a', 'b'})); assert (isequal(get (x, 'colnames'), {'a', 'b'})); ***** error stk_factorialdesign ('bouh'); ***** error stk_factorialdesign ({{'a' 'b'}}); ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_sampling_regulargrid (3^2, 2); ***** test format rat; disp (x); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test format long; disp (x); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test format short; disp (x); format (fmt); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test disp (stk_sampling_regulargrid (0^1, 1)); Empty data frame with 0 rows and 0 columns ***** test disp (stk_sampling_regulargrid (0^2, 2)); Empty data frame with 0 rows and 0 columns ***** test display (x); x = <9x2 stk_factorialdesign array> : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** error length (stk_sampling_regulargrid (7^2, 2)) % not defined ***** shared x x = stk_factorialdesign ({[0 1], [0 1]}); ***** assert (isequal (x(2:end, :), x(2:4, :))) ***** assert (isequal (x(2, 1:end), x(2, :))) ***** assert (isequal (x(2:end, 2:end), x(2:4, 2))) ***** error x(1:end, 1:end, 1:end) ***** shared x, y x = stk_sampling_regulargrid (3^2, 2); y = x; ***** test %%%% vercat z = vertcat (x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x); double(y)])); ***** test %%%% same thing, using cat(1, ...) z = cat (1, x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x); double(y)])); ***** test %%%% horzcat y.colnames = {'y1' 'y2'}; z = horzcat (x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x) double(y)])); ***** test %%%% same thing, using cat (2, ...) z = cat (2, x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x) double(y)])); ***** error cat (3, x, y) ***** shared x, t x = stk_sampling_regulargrid (3^2, 2); t = double (x); ***** assert (isequal (apply (x, 1, @sum), sum (t, 1))) ***** assert (isequal (apply (x, 2, @sum), sum (t, 2))) ***** error u = apply (x, 3, @sum); ***** assert (isequal (apply (x, 1, @min, []), min (t, [], 1))) ***** assert (isequal (apply (x, 2, @min, []), min (t, [], 2))) ***** error u = apply (x, 3, @min, []); ***** assert (isequal (min (x), min (t))) ***** assert (isequal (max (x), max (t))) ***** assert (isequal (std (x), std (t))) ***** assert (isequal (var (x), var (t))) ***** assert (isequal (sum (x), sum (t))) ***** assert (isequal (mean (x), mean (t))) ***** assert (isequal (mode (x), mode (t))) ***** assert (isequal (prod (x), prod (t))) ***** assert (isequal (median (x), median (t))) ***** shared x1, x2, x3, u1, u2, u3 x1 = stk_sampling_regulargrid ([4 3], 2); u1 = double (x1); x2 = stk_sampling_regulargrid ([3 4], 2); u2 = double (x2); x3 = x1 + 1; u3 = u1 + 1; ***** test z = bsxfun (@plus, x1, u2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = bsxfun (@plus, u1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = bsxfun (@plus, x1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = min (x1, x2); assert (isequal (double (z), min (u1, u2))); ***** test z = max (x1, x2); assert (isequal (double (z), max (u1, u2))); ***** error z = min (x1, x2, 1); ***** error z = max (x1, x2, 1); ***** test z = x1 + x2; assert (isequal (double (z), u1 + u2)); ***** test z = x1 - x2; assert (isequal (double (z), u1 - u2)); ***** test z = x1 .* x2; assert (isequal (double (z), u1 .* u2)); ***** test z = x3 .\ x2; assert (isequal (double (z), u3 .\ u2)); ***** test z = x2 ./ x3; assert (isequal (double (z), u2 ./ u3)); ***** test z = x3 .^ x2; assert (isequal (double (z), u3 .^ u2)); ***** test z = realpow (x3, x2); assert (isequal (double (z), realpow (u3, u2))); ***** test z = (x1 == x2); assert (isequal (double (z), (u1 == u2))); ***** test z = (x1 ~= x2); assert (isequal (double (z), (u1 ~= u2))); ***** test z = (x1 <= x2); assert (isequal (double (z), (u1 <= u2))); ***** test z = (x1 >= x2); assert (isequal (double (z), (u1 >= u2))); ***** test z = (x1 < x2); assert (isequal (double (z), (u1 < u2))); ***** test z = (x1 > x2); assert (isequal (double (z), (u1 > u2))); ***** test z = x1 & x2; assert (isequal (double (z), u1 & u2)); ***** test z = x1 | x2; assert (isequal (double (z), u1 | u2)); ***** test z = xor (x1, x2); assert (isequal (double (z), xor (u1, u2))); ***** shared x x = stk_factorialdesign ({[0 1], [0 1 2]}); ***** assert (strcmp (class (x'), 'stk_dataframe')) ***** assert (strcmp (class (x.'), 'stk_dataframe')) 60 tests, 60 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_dataframe.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_dataframe.m ***** shared x, cn, rn, y, cn2, rn2 cn = {'x' 'y'}; rn = {'a'; 'b'; 'c'; 'd'}; x = stk_factorialdesign ({1:2, 1:2}, cn, rn); cn2 = {'xx' 'yy'}; rn2 = {'aa'; 'bb'; 'cc'; 'dd'}; ***** test y = stk_dataframe (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, [], rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, {}, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, {})) ***** assert (isequal (y.rownames, rn2)) 20 tests, 20 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_boundingbox.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = stk_factorialdesign ({[1 2], [3 4 5], [0 2 8]}, cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** assert (isequal (y, stk_hrect ([1 3 0; 2 5 8], cn))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/ndgrid.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/ndgrid.m ***** shared data data = stk_factorialdesign ({[0 1], [5 6 7]}); ***** test % nargout = 0 ndgrid (data); assert (isequal (ans, [0 0 0; 1 1 1])); ***** test % nargout = 1 x = ndgrid (data); assert (isequal (x, [0 0 0; 1 1 1])); ***** test % nargout = 2 [x, y] = ndgrid (data); assert (isequal ({x, y}, {[0 0 0; 1 1 1], [5 6 7; 5 6 7]})); ***** error % nargout = 3 [x, y, z] = ndgrid (data); ***** test data = stk_factorialdesign ({[], []}); [x, y] = ndgrid (data); assert (isequal ({x, y}, {[], []})); ***** test data = stk_factorialdesign ({[1:3]}); x = ndgrid (data); assert (isequal (x, [1; 2; 3])); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/ismember.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/ismember.m ***** shared A, B, BB, b i_max = 10; n = 100; d = 5; A = randi (i_max, n, d); levels = repmat ({1:i_max}, 1, d); levels{4} = 1:2:i_max; B = stk_factorialdesign (levels); BB = double (B); ***** test b = ismember (A, B); ***** assert (isequal (b, ismember (A, BB))); ***** test b = ismember (A, B, 'rows'); ***** assert (isequal (b, ismember (A, BB, 'rows'))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/fieldnames.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/fieldnames.m ***** test x = stk_factorialdesign ({0:1, 3:5}, {'u' 'v'}); fn1 = sort (fieldnames (x)); fn2 = {'colnames'; 'data'; 'info'; 'levels'; ... 'rownames'; 'sample_size'; 'stk_dataframe'; 'u'; 'v'}; assert (isequal (fn1, fn2)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/vertcat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/vertcat.m ***** shared u, v u = rand (3, 2); v = rand (3, 2); ***** test x = stk_dataframe (u); y = stk_dataframe (v); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % the same, with row names this time x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); y = stk_dataframe (v, {}, {'d'; 'e'; 'f'}); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); assert (all (strcmp (z.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'}))); ***** test % the same, with row names only for the first argument x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); y = stk_dataframe (v); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % incompatible variable names u = rand (3, 1); x = stk_dataframe (u, {'x'}); v = rand (3, 1); y = stk_dataframe (v, {'y'}); z = vertcat (x, y); assert (isequal (z.colnames, {})); warning: Incompatible column names ! The output of vertcat will have no column names. warning: called from vertcat at line 82 column 9 __test__ at line 5 column 4 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 1278 column 31 ***** test x = stk_dataframe (u); z = vertcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % the same, with row names for the first argument x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); z = vertcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test y = stk_dataframe (v); z = vertcat (u, y); assert (isa (z, 'stk_dataframe') && (isequal (double (z), [u; v]))); ***** test x = stk_dataframe (u); y = stk_dataframe (v); z = vertcat (x, y, u, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v; u; v])); ***** shared x, y x = stk_dataframe (rand (2, 3), {'a', 'b', 'c'}); y = stk_dataframe (rand (3, 2), {'a', 'b'}); y = horzcat (y, rand(3, 1)); % last column name is missing ***** test z = vertcat (x, y); assert (isequal (z.colnames, {'a' 'b' 'c'})) ***** test z = vertcat (y, x); assert (isequal (z.colnames, {'a' 'b' 'c'})) 10 tests, 10 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/var.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/var.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (var(df1), var(x1))) ***** assert (isequal (var(df1, 0, 1), var(x1))) ***** assert (isequal (var(df1, 0, 2), var(x1, 0, 2))) ***** assert (isequal (var(df1, 1), var(x1, 1))) ***** assert (isequal (var(df1, 1, 1), var(x1, 1))) ***** assert (isequal (var(df1, 1, 2), var(x1, 1, 2))) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/unique.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/unique.m ***** test cn = {'u' 'v' 'w'}; x = stk_dataframe (rand (4, 3), cn); y = [x; x]; z = unique (y, 'rows'); assert (isequal (z.colnames, cn)); assert (isequal (z.data, unique (x.data, 'rows'))); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/transpose.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/transpose.m ***** test u = rand(3, 2) + 1i * rand(3, 2); data = stk_dataframe(u, {'x' 'y'}, {'obs1'; 'obs2'; 'obs3'}); data = data.'; assert (isa(data, 'stk_dataframe') && isequal(double(data), u.')); assert (isequal(data.rownames, {'x'; 'y'})); assert (isequal(data.colnames, {'obs1' 'obs2' 'obs3'})); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/times.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/times.m ***** test stk_test_dfbinaryop(@times, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@times, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@times, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tanh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/tanh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tanh (x); assert (strcmp (class (v), class (u)) && isequal (v, tanh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tand.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/tand.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tand (x); assert (strcmp (class (v), class (u)) && isequal (v, tand (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tan.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/tan.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tan (x); assert (strcmp (class (v), class (u)) && isequal (v, tan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sum.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sum.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (sum(df1), sum(x1))) ***** assert (isequal (sum(df1, 1), sum(x1))) ***** assert (isequal (sum(df1, 2), sum(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/subsref.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/subsref.m ***** shared x, s, t, data x = stk_dataframe(rand(3, 2)); s = {'a'; 'b'; 'c'}; t = {'xx' 'yy'}; ***** test x = set(x, 'rownames', s); assert (isequal (x.rownames, s)) assert (isequal (x.rownames{2}, 'b')) ***** test x = set(x, 'colnames', t); assert (isequal (x.rownames, s)) assert (isequal (x.colnames, t)) assert (isequal (x.colnames{2}, 'yy')) ***** shared u, data u = rand(3, 2); data = stk_dataframe(u, {'x1', 'x2'}); ***** assert (isequal (data.x2, u(:, 2))) ***** assert (data.x2(3) == u(3, 2)) ***** error t = data.toto; ***** error t = data(1, 1).zzz; % illegal multilevel indexing ***** error t = data(1, 1, 1); % too many indices ***** error t = data{1}; % curly braces not allowed ***** test % select rows and columns x = stk_dataframe (reshape (1:15, 5, 3), {'u' 'v' 'w'}); assert (isequal (x([3 5], 2), stk_dataframe ([8; 10], {'v'}))); ***** shared u, data u = rand(3, 1); data = stk_dataframe(u, {'x'}); ***** assert (isequal (data.x, u)) ***** assert (isequal (double (data), u)) ***** assert (isequal (double (data(2)), u(2))) ***** assert (isequal (double (data(3, 1)), u(3))) ***** error t = data(1, 1, 1); % too many indices ***** test x = stk_dataframe (randn (2, 2), {'u' 'v'}); y = x ([], :); assert (isa (y, 'stk_dataframe')); assert (isequal (size (y), [0 2])); assert (isequal (y.colnames, {'u' 'v'})); ***** test x = stk_dataframe (randn (2, 2), [], {'a' 'b'}); y = x (:, []); assert (isa (y, 'stk_dataframe')); assert (isequal (size (y), [2 0])); assert (isequal (y.rownames, {'a'; 'b'})); 16 tests, 16 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/subsasgn.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/subsasgn.m ***** shared x, s, t, data x = stk_dataframe (rand (3, 2)); s = {'a'; 'b'; 'c'}; t = {'xx' 'yy'}; ***** test x.rownames = s; assert (isequal (get (x, 'rownames'), s)) ***** test x.colnames = t; assert (isequal (get (x, 'rownames'), s)) assert (isequal (get (x, 'colnames'), t)) ***** test x.rownames{2} = 'dudule'; assert (isequal (get (x, 'rownames'), {'a'; 'dudule'; 'c'})) assert (isequal (get (x, 'colnames'), t)) ***** test x.colnames{1} = 'martha'; assert (isequal (get (x, 'rownames'), {'a'; 'dudule'; 'c'})) assert (isequal (get (x, 'colnames'), {'martha' 'yy'})) ***** test data = stk_dataframe (zeros(3, 2), {'x1' 'x2'}); u = rand(3, 1); data.x2 = u; assert (isequal (double (data), [zeros(3, 1) u])) ***** test data = stk_dataframe (zeros (3, 2), {'x1' 'x2'}); data.x2(3) = 27; assert (isequal (double (data), [0 0; 0 0; 0 27])) ***** error data.toto = rand (3, 1); ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), {'u' 'v' 'w'}); ***** test x(:, 2) = []; assert (isequal (size (x), [4 2])) assert (isequal (double (x), [1 9; 2 10; 3 11; 4 12])) assert (isequal (get (x, 'colnames'), {'u' 'w'})) assert (isempty (get (x, 'rownames'))) ***** test x(2, :) = []; assert (isequal (size (x), [3 2])) assert (isequal (double (x), [1 9; 3 11; 4 12])) assert (isempty (get (x, 'rownames'))) ***** test x.rownames = {'a'; 'b'; 'c'}; x(2, :) = []; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 9; 4 12])) assert (isequal (x.rownames, {'a'; 'c'})) ***** test % change one value with matrix-style indexing x(1, 2) = 11; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 11; 4 12])) ***** test % change one value with linear indexing x(3) = 13; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 13; 4 12])) ***** assert (isequal (double (x(:, :)), [1 13; 4 12])); ***** test % assignment to a variable that doesn't exist A = stk_dataframe (7.1); clear B; B(2) = A; assert (strcmp (class (B), 'stk_dataframe')) assert (isequal (B.data, [0 7.1])); ***** test % repmat x = stk_dataframe (1); y = repmat (x, 2, 3); assert (isa (y, 'stk_dataframe')); assert (isequal (y.data, ones (2, 3))); ***** test x(:, :) = []; assert (isempty (x)); ***** test % Delete the only row of a one-row dataframe y1 = stk_dataframe ([1.2 3.33], {'mean', 'var'}); y1(1, :) = []; % Remove the only row of data assert (isequal (size (y1), [0 2])) assert (isequal (y1.colnames, {'mean', 'var'})) y11 = get (y1, 'mean'); assert (isempty (y11)); ***** error x{1} = 2; ***** error x(1, 2) = []; ***** error x(1, 2).a = 3; ***** shared x x = stk_dataframe((1:5)'); ***** test x(2) = 0; assert (isequal (double (x), [1; 0; 3; 4; 5])); ***** test x(3) = []; assert (isequal (double (x), [1; 0; 4; 5])); ***** test x(3, 1) = 0; assert (isequal(double(x), [1; 0; 0; 5])); ***** error x(3, 1, 1) = 297; ***** test % create a new row and a new column through subsasgn() x = stk_dataframe (rand (5, 2)); x(6, 3) = 7; assert(isequal(size(x), [6, 3])); ***** test x = stk_dataframe ([]); x.colnames{2} = 'v'; x.rownames{2} = 'b'; assert (isequal (x.rownames, {''; 'b'})); assert (isequal (x.colnames, {'' 'v'})); assert (isequal (size (x.data), [2 2]) && (all (isnan (x.data(:))))) ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), {'u' 'v' 'w'}); ***** test % change one column using ':', plain numeric argument y = [0; 9; 0; 9]; z = x; z(:, 2) = y; assert (isequal (z(:, 1), x(:, 1))); assert (isequal (z(:, 2).data, y)); ***** test % change one column using ':', skt_dataframe argument y = stk_dataframe ([0; 9; 0; 9], {'y'}); z = x; z(:, 2) = y; assert (isequal (z(:, 1), x(:, 1))); assert (isequal (z(:, 2), y)); ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), [], {'a'; 'b'; 'c'; 'd'}); ***** test % change one row using ':', plain numeric argument y = [7 7 7]; z = x; z(3, :) = y; assert (isequal (z(1, :), x(1, :))); assert (isequal (z(3, :).data, y)); ***** test % change one row using ':', skt_dataframe argument y = stk_dataframe ([7 7 7], [], {'y'}); z = x; z(3, :) = y; assert (isequal (z(1, :), x(1, :))); assert (isequal (z(3, :), y)); ***** shared x x = stk_dataframe (zeros (2), {'u' 'v'}); ***** test % first column x(1:2) = 1; y = stk_dataframe ([1 0; 1 0], {'u' 'v'}); assert (isequal (x, y)); ***** test % one more element x(1:3) = 2; y = stk_dataframe ([2 2; 2 0], {'u' 'v'}); assert (isequal (x, y)); ***** error % too many elements x(1:5) = 3; ***** shared x x = stk_dataframe (randn (3, 3)); ***** test x.colnames{2} = 'y'; ***** assert (isequal (x.colnames, {'' 'y' ''})); ***** test x.rownames{2} = 'b'; ***** assert (isequal (x.rownames, {''; 'b'; ''})); 37 tests, 37 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_sprintf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_sprintf.m ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_dataframe (rand (3, 2)); ***** test format rat; disp (x); : -------- -------- * : 0.311970 0.544860 * : 0.383066 0.400589 * : 0.361101 0.024344 ***** test format long; disp (x); : ---------------- ---------------- * : 0.31196956613135 0.54485951200147 * : 0.38306633109961 0.40058878558200 * : 0.36110082662564 0.02434409023347 ***** test format short; disp (x); format (fmt); : -------- -------- * : 0.311970 0.544860 * : 0.383066 0.400589 * : 0.361101 0.024344 ***** test disp (stk_dataframe (zeros (0, 1))) Empty data frame with 0 rows and 0 columns ***** test disp (stk_dataframe (zeros (0, 2))) Empty data frame with 0 rows and 0 columns 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_rescale.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_rescale.m ***** test u = rand(5, 1) * 2; x = stk_dataframe(u); y = stk_rescale(x, [0; 2], [0; 3]); assert (isa (y, 'stk_dataframe') && isequal(double(y), u * 3/2)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_normalize.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_normalize.m ***** test u = rand (6, 2) * 2; x = stk_dataframe (u); y = stk_normalize (x); assert (isa (y, 'stk_dataframe') ... && stk_isequal_tolabs (double (y), stk_normalize (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_length.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_length.m ***** test x = stk_dataframe ([1 2; 3 4; 5 6]); assert (isequal (stk_length (x), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_get_sample_size.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_get_sample_size.m ***** test x = stk_dataframe ([1 2; 3 4; 5 6]); assert (isequal (stk_get_sample_size (x), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_dataframe.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_dataframe.m ***** test stk_test_class ('stk_dataframe') ***** test % default constructor x = stk_dataframe (); assert (isa (x, 'stk_dataframe') && isequal (size (x), [0 0])) ***** test y = stk_dataframe (rand (3, 2)); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) ***** test y = stk_dataframe (rand (3, 2), {'x', 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) ***** test y = stk_dataframe (rand (3, 2), {'x', 'y'}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) ***** error x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, pi); ***** error x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {}, pi); ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {'x' 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {'x' 'y'}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2), {'x' 'y'}); y = stk_dataframe (x, [], {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2), {'x' 'y'}); y = stk_dataframe (x, {}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {'x' 'y'}); y = stk_dataframe (x, [], {'a' 'b' 'c' 'd' 'e' 'f'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x, {'x' 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x, {'x' 'y'}, []); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {'x' 'y'}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** error x = stk_factorialdesign ({1:3, 1:2}); y = stk_dataframe (x, pi); ***** error x = stk_factorialdesign ({1:3, 1:2}); y = stk_dataframe (x, {}, pi); ***** test x = stk_dataframe ([], {'a', 'b'}); assert (isequal (size (x), [0 2])) assert (isequal (x.colnames, {'a' 'b'})); assert (isequal (x.rownames, {})); ***** test x = stk_dataframe ([], {'a', 'b'}, {'toto'}); assert (isequal (size (x), [1 2])) assert (isequal (x.colnames, {'a' 'b'})); assert (isequal (x.rownames, {'toto'})); ***** shared x ***** test x = stk_dataframe (randn (10, 1), 'NOx'); assert (isequal (x.colnames, {'NOx'})); ***** test y = stk_dataframe (x, 'toto'); assert (isequal (y.colnames, {'toto'})); ***** test x = stk_dataframe (randn (1, 2), {}, 'aaa'); assert (isequal (x.rownames, {'aaa'})); ***** test y = stk_dataframe (x, {}, 'tata'); assert (isequal (y.rownames, {'tata'})); 24 tests, 24 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_boundingbox.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = stk_dataframe ([0 3 2; 1 4 1; 7 0 2], cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** assert (isequal (y, stk_hrect ([0 0 1; 7 4 2], cn))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/std.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/std.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (std(df1), std(x1))) ***** assert (isequal (std(df1, 0, 1), std(x1))) ***** assert (isequal (std(df1, 0, 2), std(x1, 0, 2))) ***** assert (isequal (std(df1, 1), std(x1, 1))) ***** assert (isequal (std(df1, 1, 1), std(x1, 1))) ***** assert (isequal (std(df1, 1, 2), std(x1, 1, 2))) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sqrt.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sqrt.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sqrt (x); assert (strcmp (class (v), class (u)) && isequal (v, sqrt (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sort.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sort.m ***** shared x, y x = stk_dataframe ([3; 2; 1], {}, {'a', 'b', 'c'}); y = sort (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.data, [1; 2; 3])) ***** assert (isequal (y.rownames, {'c'; 'b'; 'a'})) ***** error y = sort (x, []); ***** assert (isequal (sort (x, 1), y)) ***** assert (isequal (sort (x, 2), x)) ***** error sort (x, 3) ***** error y = sort (x, [], 'ascend'); ***** assert (isequal (sort (x, 1, 'ascend'), y)) ***** assert (isequal (sort (x, 2, 'ascend'), x)) ***** error y = sort (x, 3, 'ascend'); ***** error y = sort (x, [], 'descend'); ***** assert (isequal (sort (x, 1, 'descend'), x)) ***** assert (isequal (sort (x, 2, 'descend'), x)) ***** error sort (x, 3, 'descend') 15 tests, 15 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/size.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/size.m ***** shared x x = stk_dataframe([1 2; 3 4; 5 6]); ***** assert (isequal (size(x), [3 2])) ***** assert (numel(x) == 1) ***** assert (ndims(x) == 2) ***** test size(x); % force exploration of branch nargout == 0 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sinh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sinh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sinh (x); assert (strcmp (class (v), class (u)) && isequal (v, sinh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sind.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sind.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sind (x); assert (strcmp (class (v), class (u)) && isequal (v, sind (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sin.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sin.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sin (x); assert (strcmp (class (v), class (u)) && isequal (v, sin (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/reshape.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/reshape.m ***** test x = stk_dataframe (randn (10, 3)); y = reshape (x, 5, 6); assert (isa (y, 'stk_dataframe') && isequal (size (y), [5 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/realpow.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/realpow.m ***** test stk_test_dfbinaryop(@realpow, rand(7, 2), .1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@realpow, rand(7, 2), .1); ***** error stk_test_dfbinaryop(@realpow, rand(7, 2), .1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/rdivide.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/rdivide.m ***** test stk_test_dfbinaryop(@rdivide, rand(7, 2), 1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@rdivide, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@rdivide, rand(7, 2), 1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/quantile.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/quantile.m ***** shared x1, df1, p x1 = rand (9, 3); df1 = stk_dataframe (x1, {'a', 'b', 'c'}); p = 0.95; ***** assert (isequal (quantile (df1, p), quantile (x1, p))) ***** assert (isequal (quantile (df1, p, 1), quantile (x1, p))) ***** assert (isequal (quantile (df1, p, 2), quantile (x1, p, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/prod.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/prod.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (prod(df1), prod(x1))) ***** assert (isequal (prod(df1, 1), prod(x1))) ***** assert (isequal (prod(df1, 2), prod(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/power.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/power.m ***** test stk_test_dfbinaryop(@power, rand(7, 2), .1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@power, rand(7, 2), .1); ***** error stk_test_dfbinaryop(@power, rand(7, 2), .1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/plus.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/plus.m ***** test stk_test_dfbinaryop(@plus, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@plus, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@plus, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/plot.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/plot.m ***** test % plot with x as a vector and z as a (univariate) dataframe x = linspace(0, 2*pi, 30)'; z = stk_dataframe(sin(x)); figure; plot(x, z); close(gcf); ***** test % plot with x as a vector and z as a (multivariate) dataframe x = linspace(0, 2*pi, 30)'; z = stk_dataframe([sin(x) cos(x)], {'sin' 'cos'}); figure; plot(x, z); close(gcf); ***** test % plot with x as a dataframe and z as a vector x = stk_dataframe(linspace(0, 2*pi, 30)'); z = sin(double(x)); figure; plot(x, z); close(gcf); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mtimes.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mtimes.m ***** shared x, y, z, w u = [1 3 4; 2 7 6]; % 2 x 3 v = [6 2; 1 7; 9 4]; % 3 x 2 w = [45 39; 73 77]; % u * v x = stk_dataframe (u, {}, {'a'; 'b'}); y = stk_dataframe (v, {'c' 'd'}); z = x * y; ***** assert (isa (z, 'stk_dataframe')); ***** assert (isequal (z.data, w)); ***** assert (isequal (z.rownames, x.rownames)); ***** assert (isequal (z.colnames, y.colnames)); ***** shared x, y x = stk_dataframe (rand (3, 2), {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = 3 * x; ***** assert (isequal (y, stk_dataframe (3 * x.data, {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** test y = x * 3; ***** assert (isequal (y, stk_dataframe (3 * x.data, {'x' 'y'}, {'a'; 'b'; 'c'}))); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mrdivide.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mrdivide.m ***** test x1_data = [8 7; 58 49]; x1 = stk_dataframe (x1_data, {'x' 'y'}, {'a'; 'b'}); x2_data = [8 7; 2 0]; x2 = stk_dataframe (x2_data, {'x' 'y'}, {'u'; 'v'}); y = x1 / x2; assert (stk_isequal_tolabs (y, ... stk_dataframe ([1 0; 7 1], {'u'; 'v'}, {'a'; 'b'}))); ***** shared x_data, x, y_data, y x_data = [3 3; 6 3; 9 12]; y_data = [1 1; 2 1; 3 4]; x = stk_dataframe (x_data, {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = x / 3; ***** assert (isequal (y, stk_dataframe ([1 1; 2 1; 3 4], {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** error y = 3 / x; 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mode.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mode.m ***** shared x1, df1 x1 = floor(3 * rand(9, 3)); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (mode(df1), mode(x1))) ***** assert (isequal (mode(df1, 1), mode(x1))) ***** assert (isequal (mode(df1, 2), mode(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mldivide.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mldivide.m ***** test x1_data = [57 7; 2 0]; x1 = stk_dataframe (x1_data, {'x' 'y'}, {'a'; 'b'}); x2_data = [8 7; 2 0]; x2 = stk_dataframe (x2_data, {'w' 'z'}, {'a'; 'b'}); y = x2 \ x1; assert (stk_isequal_tolabs (y, ... stk_dataframe ([1 0; 7 1], {'x'; 'y'}, {'w'; 'z'}))); ***** shared x_data, x, y_data, y x_data = [3 3; 6 3; 9 12]; y_data = [1 1; 2 1; 3 4]; x = stk_dataframe (x_data, {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = 3 \ x; ***** assert (isequal (y, stk_dataframe (y_data, {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** error y = x \ 3; 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/minus.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/minus.m ***** test stk_test_dfbinaryop(@minus, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@minus, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@minus, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/min.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/min.m ***** test stk_test_dfbinaryop ('min', rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop ('min', rand(7, 2), pi); ***** error stk_test_dfbinaryop ('min', rand(7, 2), rand(7, 3)); ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (min(df1), min(x1))) ***** assert (isequal (min(df1, [], 1), min(x1))) ***** assert (isequal (min(df1, [], 2), min(x1, [], 2))) ***** error (min(df1, df1, 2)) ***** test x = stk_dataframe ([5; 2; 4]); [M, k] = min (x); assert ((M == 2) && (k == 2)); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/median.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/median.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (median(df1), median(x1))) ***** assert (isequal (median(df1, 1), median(x1))) ***** assert (isequal (median(df1, 2), median(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mean.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mean.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (mean(df1), mean(x1))) ***** assert (isequal (mean(df1, 1), mean(x1))) ***** assert (isequal (mean(df1, 2), mean(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/max.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/max.m ***** test stk_test_dfbinaryop ('max', rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop ('max', rand(7, 2), pi); ***** error stk_test_dfbinaryop ('max', rand(7, 2), rand(7, 3)); ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (max(df1), max(x1))) ***** assert (isequal (max(df1, [], 1), max(x1))) ***** assert (isequal (max(df1, [], 2), max(x1, [], 2))) ***** error (max(df1, df1, 2)) ***** test x = stk_dataframe ([1; 3; 2]); [M, k] = max (x); assert ((M == 3) && (k == 2)); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/logical.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/logical.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = logical (x); assert (strcmp (class(v), 'logical') && isequal (v, logical (u))) ***** test u = (rand (4, 3) < 0.5); x = stk_dataframe (u); v = logical (x); assert (strcmp (class (v), 'logical') && isequal (v, u)) ***** test u = uint8 (rand (4, 3) * 5); x = stk_dataframe (u); v = logical (x); assert (strcmp (class (v), 'logical') && isequal (v, logical (u))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log2.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/log2.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log2 (x); assert (strcmp (class (v), class (u)) && isequal (v, log2 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log1p.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/log1p.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log1p (x); assert (strcmp (class (v), class (u)) && isequal (v, log1p (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log10.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/log10.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log10 (x); assert (strcmp (class (v), class (u)) && isequal (v, log10 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/log.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log (x); assert (strcmp (class (v), class (u)) && isequal (v, log (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/length.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/length.m ***** error length (stk_dataframe ([1 2; 3 4; 5 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ldivide.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/ldivide.m ***** test stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), pi); ***** error stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isnan.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/isnan.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isnan (x); assert (islogical (v) && isequal (v, isnan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ismember.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/ismember.m ***** shared u, x, u1, x1, u2, x2 u = rand (10, 4); x = stk_dataframe (u); x1 = x(1, :); u1 = double (x1); u2 = - ones (1, 4); x2 = stk_dataframe (u2); ***** assert (ismember (u1, x, 'rows')) ***** assert (ismember (x1, u, 'rows')) ***** assert (ismember (x1, x, 'rows')) ***** assert (~ ismember (u2, x, 'rows')) ***** assert (~ ismember (x2, u, 'rows')) ***** assert (~ ismember (x2, x, 'rows')) ***** test [b, idx] = ismember ([x2; x1; x1], x, 'rows'); assert (isequal (b, [false; true; true])); assert (isequal (idx, [0; 1; 1])) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isinf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/isinf.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isinf (x); assert (islogical (v) && isequal (v, isinf (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isfinite.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/isfinite.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isfinite (x); assert (islogical (v) && isequal (v, isfinite (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/horzcat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/horzcat.m ***** shared u, v u = rand(3, 2); v = rand(3, 2); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); ***** test x = stk_dataframe(u, {'x1' 'x2'}, {'a'; 'b'; 'c'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); assert(all(strcmp(z.rownames, {'a'; 'b'; 'c'}))); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}, {'a'; 'b'; 'c'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); assert(all(strcmp(z.rownames, {'a'; 'b'; 'c'}))); ***** test % incompatible row names x = stk_dataframe (u, {'x1' 'x2'}, {'a'; 'b'; 'c'}); y = stk_dataframe (v, {'y1' 'y2'}, {'a'; 'b'; 'd'}); z = horzcat (x, y); assert (isequal (z.rownames, {})); warning: Incompatible row names ! The output of horzcat will have no row names. warning: called from horzcat at line 73 column 9 __test__ at line 5 column 4 test at line 682 column 11 /tmp/tmp.NQSMr4DKEL at line 1702 column 31 ***** test x = stk_dataframe (u); z = horzcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u v])); ***** test y = stk_dataframe (v); z = horzcat (u, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u v])); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y, u, v); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v u v])); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/fieldnames.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/fieldnames.m ***** test x = stk_dataframe (rand (3, 2), {'u' 'v'}); assert (isequal (sort (fieldnames (x)), ... {'colnames'; 'data'; 'info'; 'rownames'; 'sample_size'; 'u'; 'v'})); ***** test x = stk_dataframe (rand (3, 2)); x.rownames(2:3) = {'aa', 'bb'}; x.colnames{2} = 'toto'; assert (isequal (fieldnames (x), ... {'toto'; 'aa'; 'bb'; 'data'; 'info'; ... 'rownames'; 'colnames'; 'sample_size'})); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/expm1.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/expm1.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = expm1 (x); assert (strcmp (class (v), class (u)) && isequal (v, expm1 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/exp.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/exp.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = exp (x); assert (strcmp (class (v), class (u)) && isequal (v, exp (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/end.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/end.m ***** shared x x = stk_dataframe ([1; 2; 3]); ***** assert (isequal (double (x(2:end, :)), [2; 3])) ***** assert (isequal (double (x(2:end)), [2; 3])) ***** assert (isequal (double (x(2, 1:end)), 2)) ***** assert (isequal (double (x(end)), 3)) ***** shared x x = stk_dataframe ([1 2; 3 4; 5 6]); ***** assert (isequal (x(2:end, :), x(2:3, :))) ***** assert (isequal (x(2, 1:end), x(2, :))) ***** assert (isequal (x(2:end, 2:end), x(2:3, 2))) ***** error x(1:end, 1:end, 1:end) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/double.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/double.m ***** test u = rand(4, 3); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, u)) ***** test u = (rand(4, 3) < 0.5); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, double(u))) ***** test u = uint8 (rand (4, 3) * 5); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, double(u))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/display.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/display.m ***** test display (stk_dataframe (rand (3, 2))); = <3x2 stk_dataframe array> : -------- -------- * : 0.006180 0.529261 * : 0.343639 0.330580 * : 0.738640 0.304657 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/disp.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/disp.m ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_dataframe (rand (3, 2)); ***** test format rat; disp (x); : -------- -------- * : 0.201258 0.947414 * : 0.361473 0.040496 * : 0.840764 0.147279 ***** test format long; disp (x); : ---------------- ---------------- * : 0.20125799691335 0.94741446071997 * : 0.36147278153637 0.04049614115718 * : 0.84076426196789 0.14727886941459 ***** test format short; disp (x); format (fmt); : -------- -------- * : 0.201258 0.947414 * : 0.361473 0.040496 * : 0.840764 0.147279 ***** test disp (stk_dataframe (zeros (0, 1))) Empty data frame with 0 rows and 0 columns ***** test disp (stk_dataframe (zeros (0, 2))) Empty data frame with 0 rows and 0 columns 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ctranspose.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/ctranspose.m ***** test u = rand(3, 2) + 1i * rand(3, 2); data = stk_dataframe(u, {'x' 'y'}, {'obs1'; 'obs2'; 'obs3'}); data = data'; assert (isa(data, 'stk_dataframe') && isequal(double(data), u')); assert (isequal(data.rownames, {'x'; 'y'})); assert (isequal(data.colnames, {'obs1' 'obs2' 'obs3'})); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cosh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/cosh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cosh (x); assert (strcmp (class (v), class (u)) && isequal (v, cosh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cosd.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/cosd.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cosd (x); assert (strcmp (class (v), class (u)) && isequal (v, cosd (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cos.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/cos.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cos (x); assert (strcmp (class (v), class (u)) && isequal (v, cos (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/cat.m ***** shared u, v, x, y u = rand(3, 2); v = rand(3, 2); x = stk_dataframe(u); y = stk_dataframe(v); ***** test % vertical z = cat(1, x, y); assert(isa(z, 'stk_dataframe')); assert(isequal(double(z), [u; v])); ***** error z = cat(3, x, y); ***** test % horizontal y = stk_dataframe(v, {'y1' 'y2'}); z = cat(2, x, y); assert(isa(z, 'stk_dataframe')); assert(isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'' '' 'y1' 'y2'}))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/bsxfun.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/bsxfun.m ***** shared x1, x2, data1, data2 x1 = rand (3, 2); data1 = stk_dataframe (x1); x2 = rand (3, 2); data2 = stk_dataframe (x2); ***** test z = bsxfun (@plus, data1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** test z = bsxfun (@plus, x1, data2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** test z = bsxfun (@plus, data1, data2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** shared x, y x = stk_dataframe (randn (2), {'x1', 'x2'}, {'a'; 'b'}); y = stk_dataframe (randn (2), {'y1', 'y2'}, {'c'; 'd'}); ***** test z = x + y; assert (isequal (z.colnames, x.colnames)); assert (isequal (z.rownames, x.rownames)); ***** test z = y + x; assert (isequal (z.colnames, y.colnames)); assert (isequal (z.rownames, y.rownames)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atanh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/atanh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atanh (x); assert (strcmp (class (v), class (u)) && isequal (v, atanh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atand.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/atand.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atand (x); assert (strcmp (class (v), class (u)) && isequal (v, atand (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atan.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/atan.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atan (x); assert (strcmp (class (v), class (u)) && isequal (v, atan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asinh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/asinh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asinh (x); assert (strcmp (class (v), class (u)) && isequal (v, asinh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asind.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/asind.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asind (x); assert (strcmp (class (v), class (u)) && isequal (v, asind (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asin.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/asin.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asin (x); assert (strcmp (class (v), class (u)) && isequal (v, asin (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/apply.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/apply.m ***** shared x, t, u t = rand (3, 2); x = stk_dataframe (t); ***** test u = apply (x, 1, @sum); ***** assert (isequal (u, sum (t, 1))) ***** test u = apply (x, 2, @sum); ***** assert (isequal (u, sum (t, 2))) ***** error u = apply (x, 3, @sum); ***** test u = apply (x, 1, @min, []); ***** assert (isequal (u, min (t, [], 1))) ***** test u = apply (x, 2, @min, []); ***** assert (isequal (u, min (t, [], 2))) ***** error u = apply (x, 3, @min, []); ***** test t = [1; 3; 2]; x = stk_dataframe (t); [M, k] = apply (x, 1, @max, []); assert ((M == 3) && (k == 2)); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acosh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/acosh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acosh (x); assert (strcmp (class (v), class (u)) && isequal (v, acosh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acosd.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/acosd.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acosd (x); assert (strcmp (class (v), class (u)) && isequal (v, acosd (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acos.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/acos.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acos (x); assert (strcmp (class (v), class (u)) && isequal (v, acos (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/abs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/abs.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = abs (x); assert (strcmp (class (v), class (u)) && isequal (v, abs (u))) 1 test, 1 passed, 0 known failure, 0 skipped Checking C++ files ... Done running the unit tests. Summary: 1558 tests, 1558 passed, 0 known failures, 0 skipped dh_installdocs -O--buildsystem=octave dh_installchangelogs -O--buildsystem=octave dh_octave_changelogs -O--buildsystem=octave dh_octave_examples -O--buildsystem=octave dh_installsystemduser -O--buildsystem=octave dh_lintian -O--buildsystem=octave dh_perl -O--buildsystem=octave dh_link -O--buildsystem=octave dh_strip_nondeterminism -O--buildsystem=octave dh_compress -O--buildsystem=octave dh_fixperms -O--buildsystem=octave dh_missing -O--buildsystem=octave dh_dwz -a -O--buildsystem=octave dh_strip -a -O--buildsystem=octave dh_makeshlibs -a -O--buildsystem=octave dh_shlibdeps -a -O--buildsystem=octave dh_octave_substvar -O--buildsystem=octave dh_installdeb -O--buildsystem=octave dh_gencontrol -O--buildsystem=octave dpkg-gencontrol: warning: package octave-stk: substitution variable ${octave:Upstream-Description} unused, but is defined dh_md5sums -O--buildsystem=octave dh_builddeb -O--buildsystem=octave dpkg-deb: building package 'octave-stk-dbgsym' in '../octave-stk-dbgsym_2.8.1-1_arm64.deb'. dpkg-deb: building package 'octave-stk' in '../octave-stk_2.8.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../octave-stk_2.8.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../octave-stk_2.8.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/290050/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/290050/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/290050 and its subdirectories I: Current time: Sat Jun 21 02:30:22 +14 2025 I: pbuilder-time-stamp: 1750422622