I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 14 04:15:58 +14 2025 I: pbuilder-time-stamp: 1749824158 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mash_2.3+dfsg-6.dsc] I: copying [./mash_2.3+dfsg.orig.tar.xz] I: copying [./mash_2.3+dfsg-6.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 18 21:52:17 2023 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mash_2.3+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting mash in mash-2.3+dfsg dpkg-source: info: unpacking mash_2.3+dfsg.orig.tar.xz dpkg-source: info: unpacking mash_2.3+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying use_debian_mathjax.patch dpkg-source: info: applying drop_memcpy_wrapper.patch dpkg-source: info: applying link_dynamically_against_capnp.patch dpkg-source: info: applying parallel.patch dpkg-source: info: applying use_debian_packaged_libmurmurhash.patch dpkg-source: info: applying use-CXX-from-configure.patch dpkg-source: info: applying gcc-11.patch dpkg-source: info: applying gcc-13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2006678/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 13 14:16 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2006678/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2006678/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=bc570b1ae6b543b7933a66c2cb2e5dd7 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2006678 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SytsUcOZ/pbuilderrc_C03X --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SytsUcOZ/b2 --logfile b2/build.log mash_2.3+dfsg-6.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2006678/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 13), debhelper-compat (= 13), capnproto, libcapnp-dev, libgsl-dev, zlib1g-dev, libmurmurhash-dev, pkg-config, python3-sphinx, libjs-mathjax, dh-sequence-sphinxdoc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 13); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on capnproto; however: Package capnproto is not installed. pbuilder-satisfydepends-dummy depends on libcapnp-dev; however: Package libcapnp-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libmurmurhash-dev; however: Package libmurmurhash-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} capnproto{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcapnp-1.0.1{a} libcapnp-dev{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libicu72{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libmagic-mgc{a} libmagic1t64{a} libmurmurhash-dev{a} libmurmurhash2{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libssl-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-urllib3{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 53.2 MB of archives. After unpacking 250 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.2.1-3 [1324 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libcapnp-1.0.1 arm64 1.0.1-4 [1268 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 capnproto arm64 1.0.1-4 [220 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 41 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.2.1-3 [3089 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libcapnp-dev arm64 1.0.1-4 [1859 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.7.1+dfsg-6+b1 [72.7 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libgsl27 arm64 2.7.1+dfsg-6+b1 [822 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.7.1+dfsg-6+b1 [1039 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libmurmurhash2 arm64 1.6-1 [6232 B] Get: 63 http://deb.debian.org/debian trixie/main arm64 libmurmurhash-dev arm64 1.6-1 [10.2 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-1+b2 [35.3 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-1+b2 [29.3 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-1+b2 [26.2 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-1+b2 [14.0 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 python3-babel all 2.14.0-1 [111 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2023.11.17-1 [155 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-roman all 3.3-3 [9880 B] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.6-2 [37.0 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1 [14.6 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.0-1 [45.5 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-six all 1.16.0-6 [16.3 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 sphinx-common all 7.2.6-6 [702 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-sphinx all 7.2.6-6 [552 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Fetched 53.2 MB in 0s (129 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20060 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... 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Setting up libcapnp-1.0.1:arm64 (1.0.1-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up libgsl27:arm64 (2.7.1+dfsg-6+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jun 13 14:16:18 UTC 2025. Universal Time is now: Fri Jun 13 14:16:18 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up capnproto (1.0.1-4) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:arm64 (1.8.1-1+b2) ... Setting up libssl-dev:arm64 (3.2.1-3) ... Setting up autopoint (0.21-14) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libjson-perl (4.10000-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libmurmurhash-dev:arm64 (1.6-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.2.1-3) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libcapnp-dev:arm64 (1.0.1-4) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libgsl-dev (2.7.1+dfsg-6+b1) ... Setting up libtool (2.4.7-7) ... Setting up pkgconf:arm64 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up pkg-config:arm64 (1.8.1-1+b2) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up xml-core (0.19) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sphinx-common (7.2.6-6) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-six (1.16.0-6) ... Setting up python3-roman (3.3-3) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-idna (3.6-2) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Processing triggers for libc-bin (2.38-7) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-6) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2006678/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2006678/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/mash-2.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mash_2.3+dfsg-6_source.changes dpkg-buildpackage: info: source package mash dpkg-buildpackage: info: source version 2.3+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mash-2.3+dfsg' dh_auto_clean rm -rf /build/reproducible-path/mash-2.3+dfsg/debian/sphinxdoc /build/reproducible-path/mash-2.3+dfsg/debian/man /build/reproducible-path/mash-2.3+dfsg/test/*.msh \ /build/reproducible-path/mash-2.3+dfsg/test/*.dist /build/reproducible-path/mash-2.3+dfsg/test/*.json /build/reproducible-path/mash-2.3+dfsg/Makefile \ /build/reproducible-path/mash-2.3+dfsg/config.log /build/reproducible-path/mash-2.3+dfsg/config.status /build/reproducible-path/mash-2.3+dfsg/test/screen make[1]: Leaving directory '/build/reproducible-path/mash-2.3+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:89: warning: AC_OUTPUT should be used without arguments. configure.ac:89: You should run autoupdate. debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mash-2.3+dfsg' dh_auto_configure -- --with-capnp=/usr --with-gsl=/usr --prefix=/build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-capnp=/usr --with-gsl=/usr --prefix=/build/reproducible-path/mash-2.3\+dfsg/debian/tmp/usr checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes checking for capnp... yes checking for capnp/common.h... yes checking for gsl/gsl_cdf.h... yes configure: creating ./config.status config.status: creating Makefile make[1]: Leaving directory '/build/reproducible-path/mash-2.3+dfsg' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/mash-2.3+dfsg' cd src/mash/capnp;export PATH=/usr/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path;capnp compile -I /usr/include -oc++ MinHash.capnp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Command.o src/mash/Command.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandBounds.o src/mash/CommandBounds.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandContain.o src/mash/CommandContain.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandDistance.o src/mash/CommandDistance.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandTaxScreen.o src/mash/CommandTaxScreen.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandScreen.o src/mash/CommandScreen.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandTriangle.o src/mash/CommandTriangle.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandFind.o src/mash/CommandFind.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandInfo.o src/mash/CommandInfo.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandPaste.o src/mash/CommandPaste.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandSketch.o src/mash/CommandSketch.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandList.o src/mash/CommandList.cpp In file included from src/mash/CommandTaxScreen.cpp:11: src/mash/taxdb.hpp: In member function ‘void mash::TaxDB::writeReport(FILE*, const std::unordered_map&, long unsigned int, long unsigned int, mash::TaxID, int)’: src/mash/taxdb.hpp:218:59: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 9 has type ‘mash::TaxID’ {aka ‘long unsigned int’} [-Wformat=] 218 | fprintf(FP, "%.4f\t%i\t%i\t%i\t%i\t%s\t%llu\t%s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 224 | taxon->rank.c_str(), taxID, std::string(2*depth, ' ').c_str(), taxon->name.c_str()); | ~~~~~ | | | mash::TaxID {aka long unsigned int} g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/hash.o src/mash/hash.cpp src/mash/hash.cpp: In function ‘hash_u getHash(const char*, int, uint32_t, bool)’: src/mash/hash.cpp:23:24: warning: ‘void MurmurHash3_x64_128(const void*, int, uint32_t, void*)’ is deprecated [-Wdeprecated-declarations] 23 | MurmurHash3_x64_128(seq, length, seed, data); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/mash/hash.cpp:8: /usr/include/murmurhash.h:36:1: note: declared here 36 | MurmurHash3_x64_128(const void *data, int len, uint32_t seed, void *out); | ^~~~~~~~~~~~~~~~~~~ g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashList.o src/mash/HashList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashPriorityQueue.o src/mash/HashPriorityQueue.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashSet.o src/mash/HashSet.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MinHashHeap.o src/mash/MinHashHeap.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/mash.o src/mash/mash.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Sketch.o src/mash/Sketch.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/sketchParameterSetup.o src/mash/sketchParameterSetup.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/capnp/MinHash.capnp.o src/mash/capnp/MinHash.capnp.c++ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mash-2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o mash src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandTaxScreen.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o -lkj -lcapnp -L/usr/lib -lgsl -lgslcblas -lstdc++ -lz -lm -lpthread -lmurmurhash -Wl,-z,relro -Wl,-z,now ar -cr libmash.a src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandTaxScreen.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o ranlib libmash.a make[1]: Leaving directory '/build/reproducible-path/mash-2.3+dfsg' debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/mash-2.3+dfsg' sphinx-build doc/sphinx /build/reproducible-path/mash-2.3+dfsg/debian/sphinxdoc Running Sphinx v7.2.6 making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 5 source files that are out of date updating environment: [new config] 5 added, 0 changed, 0 removed reading sources... [ 20%] data reading sources... [ 40%] distances reading sources... [ 60%] index reading sources... [ 80%] sketches reading sources... [100%] tutorials /build/reproducible-path/mash-2.3+dfsg/doc/sphinx/tutorials.rst:9: ERROR: Unknown directive type "download". .. download:: /build/reproducible-path/mash-2.3+dfsg/doc/sphinx/tutorials.rst:10: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/mash-2.3+dfsg/doc/sphinx/tutorials.rst:66: ERROR: Unknown directive type "download". .. download:: /build/reproducible-path/mash-2.3+dfsg/doc/sphinx/tutorials.rst:72: ERROR: Unknown directive type "download". .. download:: looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 20%] data writing output... [ 40%] distances writing output... [ 60%] index writing output... [ 80%] sketches writing output... [100%] tutorials generating indices... genindex done writing additional pages... search done copying images... [100%] logo_med.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in debian/sphinxdoc. make[1]: Leaving directory '/build/reproducible-path/mash-2.3+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/mash-2.3+dfsg' dh_auto_test --no-parallel make -j1 test "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mash-2.3+dfsg' cd test ; ../mash sketch -o genomes.msh genome1.fna genome2.fna genome3.fna Sketching genome1.fna... Sketching genome2.fna... Sketching genome3.fna... Writing to genomes.msh... cd test ; ../mash sketch -r -I reads reads1.fastq reads2.fastq -o reads.msh Estimated genome size: 502360 Estimated coverage: 1.115 Writing to reads.msh... ./mash info -d test/genomes.msh > test/genomes.json ./mash info -d test/reads.msh > test/reads.json diff test/genomes.json test/ref/genomes.json diff test/reads.json test/ref/reads.json ./mash dist test/genomes.msh test/reads.msh > test/genomes.dist diff test/genomes.dist test/ref/genomes.dist cd test ; ../mash screen genomes.msh reads1.fastq reads2.fastq > screen Loading genomes.msh... 1419 distinct hashes. Streaming from 2 inputs... Estimated distinct k-mers in mixture: 502359 Summing shared... Computing coverage medians... Writing output... diff test/screen test/ref/screen make[2]: Leaving directory '/build/reproducible-path/mash-2.3+dfsg' make[1]: Leaving directory '/build/reproducible-path/mash-2.3+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/mash-2.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/mash-2.3+dfsg' mkdir -p /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/share/man/man1 cp `pwd`/doc/man/*.1 /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/share/man/man1 mkdir -p /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/bin/ mkdir -p /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/lib/ mkdir -p /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/include/ mkdir -p /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/include/mash mkdir -p /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/include/mash/capnp cp `pwd`/mash /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/bin/ cp `pwd`/libmash.a /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/lib/ cp `pwd`/src/mash/*.h /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/include/mash/ cp `pwd`/src/mash/capnp/MinHash.capnp.h /build/reproducible-path/mash-2.3+dfsg/debian/tmp/usr/include/mash/capnp/ make[1]: Leaving directory '/build/reproducible-path/mash-2.3+dfsg' dh_install dh_installdocs dh_sphinxdoc -i dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package mash-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: Depends field of package libmash-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'mash' in '../mash_2.3+dfsg-6_arm64.deb'. dpkg-deb: building package 'mash-dbgsym' in '../mash-dbgsym_2.3+dfsg-6_arm64.deb'. dpkg-deb: building package 'libmash-dev' in '../libmash-dev_2.3+dfsg-6_arm64.deb'. dpkg-deb: building package 'mash-doc' in '../mash-doc_2.3+dfsg-6_all.deb'. dpkg-genbuildinfo --build=binary -O../mash_2.3+dfsg-6_arm64.buildinfo dpkg-genchanges --build=binary -O../mash_2.3+dfsg-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2006678/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2006678/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2006678 and its subdirectories I: Current time: Sat Jun 14 04:17:07 +14 2025 I: pbuilder-time-stamp: 1749824227