I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 29 02:32:06 +14 2024 I: pbuilder-time-stamp: 1714307526 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.dsc] I: copying [./kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz] I: copying [./kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 21 14:37:16 2022 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting kineticstools in kineticstools-0.6.1+git20220223.1326a4d+dfsg dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying man-pages.patch dpkg-source: info: applying tests-import.patch dpkg-source: info: applying verbose-testing.patch dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying tests2to3.patch dpkg-source: info: applying man-align-cols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2119148/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 28 12:32 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2119148/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2119148/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=30dd0ed55fd0478e9a0814bb4d33393b LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2119148 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tykw7SgY/pbuilderrc_j2yH --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tykw7SgY/b2 --logfile b2/build.log kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 23 11:23 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2119148/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19940 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcore; however: Package python3-pbcore is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcommand; however: Package python3-pbcommand is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-uritools; however: Package python3-uritools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-execnet{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-pytest-runner{a} python3-pytest-xdist{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-uritools{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 63.3 MB of archives. After unpacking 291 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: python3-pbcore but it is not installable Depends: python3-pbcommand but it is not installable Depends: python3-h5py but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libssl3 [3.1.5-1 (now)] Install the following packages: 2) ca-certificates [20240203 (testing)] 3) fontconfig-config [2.15.0-1.1 (testing)] 4) fonts-urw-base35 [20200910-8 (testing)] 5) ibverbs-providers [48.0-1.1 (testing)] 6) libaec0 [1.1.3-1 (testing)] 7) libcairo2 [1.18.0-1+b1 (testing)] 8) libcbor0.10 [0.10.2-1.1 (testing)] 9) libcurl3t64-gnutls [8.7.1-3 (testing)] 10) libcurl4t64 [8.7.1-3 (testing)] 11) libedit2 [3.1-20230828-1+b1 (testing)] 12) libevent-core-2.1-7t64 [2.1.12-stable-8.1+b3 (testing)] 13) libevent-pthreads-2.1-7t64 [2.1.12-stable-8.1+b3 (testing)] 14) libfabric1 [1.17.0-3 (testing)] 15) libfido2-1 [1.14.0-1+b2 (testing)] 16) libfontconfig1 [2.15.0-1.1 (testing)] 17) libfontenc1 [1:1.1.8-1 (testing)] 18) libhdf5-openmpi-103-1 [1.10.10+repack-3+b1 (testing)] 19) libhdf5-openmpi-hl-100 [1.10.10+repack-3+b1 (testing)] 20) libhts3 [1.19+ds-1 (testing)] 21) libhtscodecs2 [1.6.0-1+b1 (testing)] 22) libhwloc-plugins [2.10.0-1+b1 (testing)] 23) libhwloc15 [2.10.0-1+b1 (testing)] 24) libibverbs1 [48.0-1.1 (testing)] 25) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] 26) liblzf1 [3.6-4+b1 (testing)] 27) libmunge2 [0.5.15-4 (testing)] 28) libnghttp2-14 [1.59.0-1 (testing)] 29) libnl-3-200 [3.7.0-0.3 (testing)] 30) libnl-route-3-200 [3.7.0-0.3 (testing)] 31) libopenmpi3 [4.1.6-5 (testing)] 32) libpciaccess0 [0.17-3+b1 (testing)] 33) libpixman-1-0 [0.42.2-1+b1 (testing)] 34) libpmix2 [5.0.1-4+b1 (testing)] 35) libpsl5t64 [0.21.2-1.1 (testing)] 36) librdmacm1 [48.0-1.1 (testing)] 37) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] 38) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] 39) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] 40) libssh2-1t64 [1.11.0-4.1+b2 (testing)] 41) libssl3t64 [3.2.1-3 (testing)] 42) libsz2 [1.1.3-1 (testing)] 43) libucx0 [1.15.0-1 (testing)] 44) libx11-6 [2:1.8.7-1+b1 (testing)] 45) libx11-data [2:1.8.7-1 (testing)] 46) libxcb-render0 [1.15-1 (testing)] 47) libxcb-shm0 [1.15-1 (testing)] 48) libxext6 [2:1.3.4-1+b1 (testing)] 49) libxnvctrl0 [535.171.04-1 (testing)] 50) libxrender1 [1:0.9.10-1.1+b1 (testing)] 51) mpi-default-bin [1.15 (testing)] 52) ocl-icd-libopencl1 [2.3.2-1+b1 (testing)] 53) openmpi-bin [4.1.6-5 (testing)] 54) openmpi-common [4.1.6-5 (testing)] 55) openssh-client [1:9.6p1-4 (testing)] 56) openssl [3.2.1-3 (testing)] 57) python3-avro [1.11.1+dfsg-2 (testing)] 58) python3-biopython [1.81+dfsg-3 (testing)] 59) python3-cairo [1.26.0-1 (testing)] 60) python3-certifi [2023.11.17-1 (testing)] 61) python3-chardet [5.2.0+dfsg-1 (testing)] 62) python3-charset-normalizer [3.3.2-1 (testing)] 63) python3-freetype [2.4.0-1 (testing)] 64) python3-h5py [3.10.0-1 (testing)] 65) python3-h5py-mpi [3.10.0-1 (testing)] 66) python3-idna [3.6-2 (testing)] 67) python3-iso8601 [1.0.2-1 (testing)] 68) python3-mpi4py [3.1.5-5 (testing)] 69) python3-pbcommand [2.1.1+git20220616.3f2e6c2-3 (testing)] 70) python3-pbcore [2.1.2+dfsg-7 (testing)] 71) python3-pysam [0.22.0+ds-1+b1 (testing)] 72) python3-reportlab [4.1.0-4 (testing)] 73) python3-requests [2.31.0+dfsg-1 (testing)] 74) python3-rlpycairo [0.3.0-3 (testing)] 75) python3-six [1.16.0-6 (testing)] 76) python3-tz [2024.1-2 (testing)] 77) python3-urllib3 [1.26.18-2 (testing)] 78) w3c-sgml-lib [1.3-3 (testing)] 79) x11-common [1:7.7+23 (testing)] 80) xfonts-encodings [1:1.0.4-2.2 (testing)] 81) xfonts-utils [1:7.7+6 (testing)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcbor0.10{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-openmpi-103-1{a} libhdf5-openmpi-hl-100{a} libhts3{a} libhtscodecs2{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-route-3-200{a} libopenjp2-7{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpixman-1-0{a} libpmix2{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} librdmacm1{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libssl3t64{a} libsub-override-perl{a} libsz2{a} libtiff6{a} libtool{a} libuchardet0{a} libucx0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} libxrender1{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} po-debconf{a} python3{a} python3-avro{a} python3-biopython{a} python3-cairo{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-execnet{a} python3-freetype{a} python3-h5py{a} python3-h5py-mpi{a} python3-idna{a} python3-iniconfig{a} python3-iso8601{a} python3-lib2to3{a} python3-minimal{a} python3-mpi4py{a} python3-numpy{a} python3-packaging{a} python3-pbcommand{a} python3-pbcore{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-pytest-runner{a} python3-pytest-xdist{a} python3-reportlab{a} python3-requests{a} python3-rlpycairo{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3-uritools{a} python3-urllib3{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages will be REMOVED: libssl3{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-core fonts-dejavu-extra javascript-common libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 180 newly installed, 1 to remove and 0 not upgraded. Need to get 104 MB of archives. After unpacking 442 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libssl3t64 arm64 3.2.1-3 [2537 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.11-minimal arm64 3.11.8-1 [811 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3.11-minimal arm64 3.11.8-1 [1848 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.11.6-1 [26.2 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1781 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.11 arm64 3.11.8-1 [597 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.11.6-1 [9224 B] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.11.6-1 [26.2 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.2-1 [800 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.2-1 [1983 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.2.1-3 [1324 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-2+b1 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libmagic1 arm64 1:5.45-2+b1 [100 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-2+b1 [43.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.39.3-6 [90.0 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20230828-1+b1 [89.1 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libcbor0.10 arm64 0.10.2-1.1 [27.0 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libfido2-1 arm64 1.14.0-1+b2 [73.4 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 openssh-client arm64 1:9.6p1-4 [913 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 47 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-distutils all 3.12.3-1 [131 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20240422 [107 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1 [22.2 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.2+dfsg-1+b4 [408 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+6 [85.6 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 70 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libnl-3-200 arm64 3.7.0-0.3 [56.5 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libnl-route-3-200 arm64 3.7.0-0.3 [165 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libibverbs1 arm64 48.0-1.1 [57.7 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 ibverbs-providers arm64 48.0-1.1 [313 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.0-1+b1 [478 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-4+b1 [20.2 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-4+b1 [55.5 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5+b3 [172 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.59.0-1 [70.2 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b2 [207 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.7.1-3 [405 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.7.1-3 [412 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-8.1+b3 [125 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-8.1+b3 [54.3 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 librdmacm1 arm64 48.0-1.1 [66.0 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libfabric1 arm64 1.17.0-3 [476 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.13-3+b1 [71.3 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.78.4-7 [1364 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 8.3.0-2+b1 [2178 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libhwloc15 arm64 2.10.0-1+b1 [140 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libmunge2 arm64 0.5.15-4 [19.2 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libpciaccess0 arm64 0.17-3+b1 [51.1 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libxnvctrl0 arm64 535.171.04-1 [13.8 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b1 [39.3 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libhwloc-plugins arm64 2.10.0-1+b1 [18.0 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libpmix2 arm64 5.0.1-4+b1 [573 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libucx0 arm64 1.15.0-1 [806 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libopenmpi3 arm64 4.1.6-5 [2166 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Get: 118 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-103-1 arm64 1.10.10+repack-3+b1 [1083 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-hl-100 arm64 1.10.10+repack-3+b1 [59.9 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.0-1+b1 [71.6 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libhts3 arm64 1.19+ds-1 [412 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-2+b2 [172 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.14-2+b1 [144 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 liblzf1 arm64 3.6-4+b1 [10.3 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.2-1 [1872 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.3.2-0.4+b1 [107 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.3.2-0.4+b1 [263 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-4 [307 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.3.2-0.4+b1 [107 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.3.2-0.4+b1 [119 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 openmpi-common all 4.1.6-5 [168 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 openmpi-bin arm64 4.1.6-5 [224 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 mpi-default-bin arm64 1.15 [2408 B] Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-avro all 1.11.1+dfsg-2 [70.5 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.2-1 [653 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.24.2-2 [4122 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.3.0-2 [552 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 python3-cairo arm64 1.26.0-1 [139 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 python3-freetype all 2.4.0-1 [80.3 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 152 http://deb.debian.org/debian trixie/main arm64 python3-reportlab all 4.1.0-4 [1113 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 python3-biopython arm64 1.81+dfsg-3 [1611 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2023.11.17-1 [155 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 python3-roman all 3.3-3 [9880 B] Get: 159 http://deb.debian.org/debian trixie/main arm64 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 python3-execnet all 2.1.1-1 [40.2 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 python3-mpi4py arm64 3.1.5-5 [663 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 python3-h5py-mpi arm64 3.10.0-1 [1253 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 python3-h5py all 3.10.0-1 [14.4 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.6-2 [37.0 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 python3-iso8601 all 1.0.2-1 [15.7 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.0-1 [45.5 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 python3-six all 1.16.0-6 [16.3 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 python3-pbcommand all 2.1.1+git20220616.3f2e6c2-3 [90.5 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.22.0+ds-1+b1 [3765 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 python3-pbcore all 2.1.2+dfsg-7 [2831 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 7.4.4-3 [239 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 python3-pytest-runner all 2.11.1-4 [8432 B] Get: 178 http://deb.debian.org/debian trixie/main arm64 python3-pytest-xdist all 3.5.0-1 [42.1 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.11.4-6 [17.5 MB] Get: 180 http://deb.debian.org/debian trixie/main arm64 python3-uritools all 4.0.1-1 [25.1 kB] Fetched 104 MB in 1s (190 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19940 files and directories currently installed.) Removing libssl3:arm64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19927 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_arm64.deb ... Unpacking libssl3t64:arm64 (3.2.1-3) ... Setting up libssl3t64:arm64 (3.2.1-3) ... Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... 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Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-4+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Apr 28 12:32:37 UTC 2024. Universal Time is now: Sun Apr 28 12:32:37 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:arm64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.78.4-7) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libmunge2:arm64 (0.5.15-4) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:arm64 (3.6-4+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... 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Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:arm64 (1.14.0-1+b2) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:arm64 (1.3.2-0.4+b1) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libsz2:arm64 (1.1.3-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-8.1+b3) ... Setting up libwebpdemux2:arm64 (1.3.2-0.4+b1) ... Setting up libedit2:arm64 (3.1-20230828-1+b1) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.3) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up xml-core (0.19) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2+b1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libibverbs1:arm64 (48.0-1.1) ... Setting up libpython3.12-stdlib:arm64 (3.12.2-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up libcurl4t64:arm64 (8.7.1-3) ... Setting up ibverbs-providers:arm64 (48.0-1.1) ... Setting up openssh-client (1:9.6p1-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libcurl3t64-gnutls:arm64 (8.7.1-3) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:arm64 (535.171.04-1) ... Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up libpython3-stdlib:arm64 (3.11.6-1) ... Setting up librdmacm1:arm64 (48.0-1.1) ... Setting up python3.11 (3.11.8-1) ... Setting up libucx0:arm64 (1.15.0-1) ... Setting up libhts3:arm64 (1.19+ds-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up libhwloc-plugins:arm64 (2.10.0-1+b1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:arm64 (10.3.0-2) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-iso8601 (1.0.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-avro (1.11.1+dfsg-2) ... Setting up python3-idna (3.6-2) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-execnet (2.1.1-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-uritools (4.0.1-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up libfabric1:arm64 (1.17.0-3) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pysam (0.22.0+ds-1+b1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libpmix2:arm64 (5.0.1-4+b1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up python3-pytest (7.4.4-3) ... Setting up libopenmpi3:arm64 (4.1.6-5) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-pytest-runner (2.11.1-4) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up openmpi-bin (4.1.6-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-103-1:arm64 (1.10.10+repack-3+b1) ... Setting up dh-python (6.20240422) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-pytest-xdist (3.5.0-1) ... Setting up mpi-default-bin (1.15) ... Setting up python3-mpi4py (3.1.5-5) ... Setting up libcairo2:arm64 (1.18.0-1+b1) ... Setting up python3-pbcommand (2.1.1+git20220616.3f2e6c2-3) ... Setting up libhdf5-openmpi-hl-100:arm64 (1.10.10+repack-3+b1) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-h5py-mpi (3.10.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-h5py (3.10.0-1) ... Setting up python3-reportlab (4.1.0-4) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-3) ... Setting up python3-pbcore (2.1.2+dfsg-7) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2119148/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2119148/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_source.changes dpkg-buildpackage: info: source package kineticstools dpkg-buildpackage: info: source version 0.6.1+git20220223.1326a4d+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_auto_clean I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pytest_cache rm -rf kineticsTools.egg-info rm -f nosetests.xml rm -f bin/ipdSummary make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/summarizeModifications.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/pipelineTools.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/loader.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/ipdSummary.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/ResultWriter.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/ReferenceUtils.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/PositiveControlEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/MixtureEstimationMethods.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools copying kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/gather_bigwig.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal copying kineticsTools/internal/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal running egg_info creating kineticsTools.egg-info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt writing manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'kineticsTools.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kineticsTools.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kineticsTools.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kineticsTools.resources' to be distributed and are already explicitly excluding 'kineticsTools.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/P6-C4.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP2-C2.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP3-C3.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/unknown.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources running build_ext building 'kineticsTools/tree_predict' extension creating build creating build/temp.linux-aarch64-cpython-311 creating build/temp.linux-aarch64-cpython-311/kineticsTools aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c kineticsTools/tree_predict.c -o build/temp.linux-aarch64-cpython-311/kineticsTools/tree_predict.o -O3 -shared -std=c99 aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/kineticsTools/tree_predict.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tree_predict.cpython-311-aarch64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' cp kineticsTools/ipdSummary.py bin/ipdSummary chmod +x bin/ipdSummary PYTHONPATH=/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg PATH=$PATH:/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/bin dh_auto_test I: pybuild base:311: cd /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build; python3.11 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build configfile: pytest.ini plugins: xdist-3.5.0 created: 12/12 workers 12 workers [19 items] scheduling tests via LoadScopeScheduling test/test_summarize_modifications.py::TestSummarizeModifications::test_integration test/test_outputs.py::TestOutputs::test_csv_output [gw5] [ 5%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output test/test_ReferenceUtils.py::TestReferenceUtils::test_bam [gw0] [ 10%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam [gw6] [ 15%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration test/test_ipdModel.py::TestIpdModel::test_refLength [gw2] [ 21%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig [gw3] [ 26%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli [gw3] [ 31%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli test/test_loader.py::test_basic [gw1] [ 36%] PASSED test/test_loader.py::test_basic test/test_loader.py::test_path [gw1] [ 42%] PASSED test/test_loader.py::test_path test/test_loader.py::test_path_with_prefixed_chem [gw1] [ 47%] PASSED test/test_loader.py::test_path_with_prefixed_chem test/test_loader.py::test_getResourcePathSpec [gw1] [ 52%] PASSED test/test_loader.py::test_getResourcePathSpec test/test_ipdModel.py::TestIpdModel::test_snippetFunc [gw2] [ 57%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow [gw2] [ 63%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow test/test_integration.py::TestKineticsTools::test_help test/test_outputs.py::TestOutputs::test_bigwig [gw5] [ 68%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset [gw0] [ 73%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow [gw0] [ 78%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw0] [ 84%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw0] [ 89%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw4] [ 94%] PASSED test/test_integration.py::TestKineticsTools::test_help test/test_integration.py::TestKineticsTools::test_ecoli_first_50k [gw4] [100%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pbcore/__init__.py:1: 12 warnings /usr/lib/python3/dist-packages/pbcore/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/nosetests.xml - ============================= slowest 20 durations ============================= 0.78s call test/test_integration.py::TestKineticsTools::test_help (19 durations < 0.005s hidden. Use -vv to show these durations.) ================== 5 passed, 14 skipped, 12 warnings in 2.52s ================== make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'kineticsTools.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kineticsTools.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kineticsTools.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kineticsTools.resources' to be distributed and are already explicitly excluding 'kineticsTools.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11 creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/.pytest_cache/.gitignore -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/.pytest_cache/README.md -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/.pytest_cache creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/.pytest_cache/v creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/nosetests.xml -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/loader.cpython-311.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-311.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-311.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-311.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tree_predict.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-311.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ReferenceUtils.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ResultWriter.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ipdSummary.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/loader.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/pipelineTools.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/summarizeModifications.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/loader.py to loader.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-311.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-311.pyc running install_egg_info Copying kineticsTools.egg-info to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing ipdSummary script to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin Installing summarizeModifications script to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin mkdir -p /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin mv debian/python3-kineticstools/usr/bin/* /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin mkdir -p /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1 rst2man doc/manual.rst > /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1 doc/manual.rst:53: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported mkdir -p debian/kineticstools-data/usr/share/kineticstools # There is probably a simpler way, but that should do for the moment. set -e \ ; for libdir in debian/python3-kineticstools/usr/lib/python3.* \ ; do rm -rf /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; mv ${libdir}/dist-packages/kineticsTools/resources /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; done rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'kineticstools' in '../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_all.deb'. dpkg-deb: building package 'kineticstools-data' in '../kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-2_all.deb'. dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_arm64.deb'. dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2119148/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2119148/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2119148 and its subdirectories I: Current time: Mon Apr 29 02:34:47 +14 2024 I: pbuilder-time-stamp: 1714307687