I: pbuilder: network access will be disabled during build I: Current time: Sat May 11 20:15:14 +14 2024 I: pbuilder-time-stamp: 1715408114 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [htseq_2.0.5-1.dsc] I: copying [./htseq_2.0.5.orig.tar.gz] I: copying [./htseq_2.0.5-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jan 12 05:59:53 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./htseq_2.0.5-1.dsc: no acceptable signature found dpkg-source: info: extracting htseq in htseq-2.0.5 dpkg-source: info: unpacking htseq_2.0.5.orig.tar.gz dpkg-source: info: unpacking htseq_2.0.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1078730/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 11 06:15 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1078730/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1078730/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=924ea8ab86964f4d974cf4f46c5763b2 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1078730 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3dnkJlw2/pbuilderrc_1hJ4 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3dnkJlw2/b2 --logfile b2/build.log htseq_2.0.5-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 8 11:23 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1078730/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: 2to3, debhelper-compat (= 13), dh-sequence-python3, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on 2to3; however: Package 2to3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-debian; however: Package python3-debian is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: 2to3{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-brotli{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-debian{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pyparsing{a} python3-pysam{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} swig{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-apt python3-bs4 python3-cssselect python3-html5lib python3-olefile shared-mime-info wget xdg-user-dirs zstd 0 packages upgraded, 164 newly installed, 0 to remove and 0 not upgraded. Need to get 123 MB of archives. After unpacking 584 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.3-1 [802 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.3-1 [1931 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 2to3 all 3.11.8-1 [10.3 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1 [975 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.2+dfsg-1+b4 [408 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.14-1 [732 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.10+dfsg-5 [3120 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 63 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 python3-distutils all 3.12.3-1 [131 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20240422 [107 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1~rc2-1 [22.5 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 81 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b2 [207 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.7.1-5 [405 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.2-1 [278 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.13-3+b1 [71.3 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.80.1-1 [1393 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 8.3.0-2+b1 [2178 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.0-1+b1 [71.6 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.19+ds-1.1+b1 [413 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.14-2+b1 [144 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libpython3.11t64 arm64 3.11.9-1 [1814 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libpython3.11-dev arm64 3.11.9-1 [4358 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.11.8-1 [9564 B] Get: 116 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.3-1 [1889 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.3-1 [1948 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.3-1 [4745 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.11.8-1 [1072 B] Get: 120 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.3.2-0.4+b1 [107 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.3.2-0.4+b1 [263 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-4 [307 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.3.2-0.4+b1 [107 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.3.2-0.4+b1 [119 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1+b1 [221 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.3-1 [659 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.11.8-1 [1056 B] Get: 131 http://deb.debian.org/debian trixie/main arm64 python3.11-dev arm64 3.11.9-1 [501 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.11.8-1 [26.1 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.3-1 [499 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.11.8-1 [1072 B] Get: 135 http://deb.debian.org/debian trixie/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 python3-attr all 23.2.0-2 [65.5 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 python3-brotli arm64 1.1.0-2+b3 [316 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-8 [4219 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 python3-contourpy arm64 1.0.7-3 [247 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 142 http://deb.debian.org/debian trixie/main arm64 python3-six all 1.16.0-6 [16.3 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-debian all 0.1.49 [115 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.11.4-6 [17.5 MB] Get: 147 http://deb.debian.org/debian trixie/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 python3-sympy all 1.12-7 [3869 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.1.0-1 [1810 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b3 [26.6 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 python3-fonttools arm64 4.46.0-1 [1510 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 python3-kiwisolver arm64 1.4.5-1 [75.0 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.3.0-2 [552 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 python3-tk arm64 3.12.3-1 [110 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 python3-pil.imagetk arm64 10.3.0-2 [80.0 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.0-1 [45.5 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.6.3-2 [7978 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.22.0+ds-1+b2 [4209 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 swig arm64 4.2.1-1 [1350 kB] Fetched 123 MB in 1s (232 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20060 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21052 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_arm64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_arm64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../013-python3-lib2to3_3.12.3-1_all.deb ... Unpacking python3-lib2to3 (3.12.3-1) ... Selecting previously unselected package 2to3. Preparing to unpack .../014-2to3_3.11.8-1_all.deb ... Unpacking 2to3 (3.11.8-1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../020-libtcl8.6_8.6.14+dfsg-1_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../021-libbrotli1_1.1.0-2+b3_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../022-libpng16-16t64_1.6.43-5_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.43-5) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../023-libfreetype6_2.13.2+dfsg-1+b4_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../026-fontconfig-config_2.15.0-1.1_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../027-libfontconfig1_2.15.0-1.1_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../028-libxau6_1%3a1.0.9-1+b1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1+b1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../029-libbsd0_0.12.2-1_arm64.deb ... Unpacking libbsd0:arm64 (0.12.2-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../030-libxdmcp6_1%3a1.1.2-3+b1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../031-libxcb1_1.15-1_arm64.deb ... Unpacking libxcb1:arm64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../032-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../033-libx11-6_2%3a1.8.7-1+b1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.7-1+b1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../034-libxrender1_1%3a0.9.10-1.1+b1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../035-libxft2_2.3.6-1+b1_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../036-libxext6_2%3a1.3.4-1+b1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../037-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../038-libxss1_1%3a1.2.3-1+b1_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../039-libtk8.6_8.6.14-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.14-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../040-tk8.6-blt2.5_2.5.3+dfsg-7_arm64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... Selecting previously unselected package blt. Preparing to unpack .../041-blt_2.5.3+dfsg-7_arm64.deb ... Unpacking blt (2.5.3+dfsg-7) ... Selecting previously unselected package cython3. Preparing to unpack .../042-cython3_3.0.10+dfsg-5_arm64.deb ... Unpacking cython3 (3.0.10+dfsg-5) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../043-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../044-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../045-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../046-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../047-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../048-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../049-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../050-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../051-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../052-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../053-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../054-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../055-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../057-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../058-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../059-python3-distutils_3.12.3-1_all.deb ... Unpacking python3-distutils (3.12.3-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../060-python3-setuptools_68.1.2-2_all.deb ... Unpacking python3-setuptools (68.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../061-dh-python_6.20240422_all.deb ... Unpacking dh-python (6.20240422) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../062-fonts-lyx_2.4.0~RC4-1_all.deb ... Unpacking fonts-lyx (2.4.0~RC4-1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../063-libblas3_3.12.0-3_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../064-libcom-err2_1.47.1~rc2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1~rc2-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../065-libkrb5support0_1.20.1-6+b1_arm64.deb ... Unpacking libkrb5support0:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../066-libk5crypto3_1.20.1-6+b1_arm64.deb ... Unpacking libk5crypto3:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../067-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../068-libkrb5-3_1.20.1-6+b1_arm64.deb ... Unpacking libkrb5-3:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../069-libgssapi-krb5-2_1.20.1-6+b1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../070-libsasl2-modules-db_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../071-libsasl2-2_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../072-libldap-2.5-0_2.5.17+dfsg-1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.17+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../073-libnghttp2-14_1.61.0-1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../074-libpsl5t64_0.21.2-1.1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../075-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../076-libssh2-1t64_1.11.0-4.1+b2_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../077-libcurl3t64-gnutls_8.7.1-5_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.7.1-5) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../078-libdeflate0_1.20-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.20-1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../079-libexpat1-dev_2.6.2-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.6.2-1) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../080-libfribidi0_1.0.13-3+b1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.13-3+b1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../081-libgfortran5_14-20240330-1_arm64.deb ... Unpacking libgfortran5:arm64 (14-20240330-1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../082-libglib2.0-0t64_2.80.1-1_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.80.1-1) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../083-libgraphite2-3_1.3.14-2_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-2) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../084-libharfbuzz0b_8.3.0-2+b1_arm64.deb ... Unpacking libharfbuzz0b:arm64 (8.3.0-2+b1) ... Selecting previously unselected package libhtscodecs2:arm64. Preparing to unpack .../085-libhtscodecs2_1.6.0-1+b1_arm64.deb ... Unpacking libhtscodecs2:arm64 (1.6.0-1+b1) ... Selecting previously unselected package libhts3t64:arm64. Preparing to unpack .../086-libhts3t64_1.19+ds-1.1+b1_arm64.deb ... Unpacking libhts3t64:arm64 (1.19+ds-1.1+b1) ... Selecting previously unselected package libimagequant0:arm64. Preparing to unpack .../087-libimagequant0_2.18.0-1+b1_arm64.deb ... Unpacking libimagequant0:arm64 (2.18.0-1+b1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../088-libjbig0_2.1-6.1+b1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../089-libjpeg62-turbo_1%3a2.1.5-3_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../090-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../091-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../092-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../093-libjs-sphinxdoc_7.2.6-6_all.deb ... Unpacking libjs-sphinxdoc (7.2.6-6) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... Unpacking liblapack3:arm64 (3.12.0-3) ... Selecting previously unselected package liblbfgsb0:arm64. Preparing to unpack .../095-liblbfgsb0_3.0+dfsg.4-1+b1_arm64.deb ... Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../096-liblcms2-2_2.14-2+b1_arm64.deb ... Unpacking liblcms2-2:arm64 (2.14-2+b1) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../097-liblerc4_4.0.0+ds-4+b1_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-4+b1) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../098-libopenjp2-7_2.5.0-2+b3_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.0-2+b3) ... Selecting previously unselected package libpython3.11t64:arm64. Preparing to unpack .../099-libpython3.11t64_3.11.9-1_arm64.deb ... Unpacking libpython3.11t64:arm64 (3.11.9-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../100-zlib1g-dev_1%3a1.3.dfsg-3.1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1) ... Selecting previously unselected package libpython3.11-dev:arm64. Preparing to unpack .../101-libpython3.11-dev_3.11.9-1_arm64.deb ... Unpacking libpython3.11-dev:arm64 (3.11.9-1) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../102-libpython3-dev_3.11.8-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.11.8-1) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../103-libpython3.12-stdlib_3.12.3-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.3-1) ... Selecting previously unselected package libpython3.12t64:arm64. Preparing to unpack .../104-libpython3.12t64_3.12.3-1_arm64.deb ... Unpacking libpython3.12t64:arm64 (3.12.3-1) ... Selecting previously unselected package libpython3.12-dev:arm64. Preparing to unpack .../105-libpython3.12-dev_3.12.3-1_arm64.deb ... Unpacking libpython3.12-dev:arm64 (3.12.3-1) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../106-libpython3-all-dev_3.11.8-1_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.11.8-1) ... Selecting previously unselected package libqhull-r8.0:arm64. Preparing to unpack .../107-libqhull-r8.0_2020.2-6+b1_arm64.deb ... Unpacking libqhull-r8.0:arm64 (2020.2-6+b1) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../108-libraqm0_0.10.1-1+b1_arm64.deb ... Unpacking libraqm0:arm64 (0.10.1-1+b1) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../109-libsharpyuv0_1.3.2-0.4+b1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.3.2-0.4+b1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../110-libwebp7_1.3.2-0.4+b1_arm64.deb ... Unpacking libwebp7:arm64 (1.3.2-0.4+b1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../111-libtiff6_4.5.1+git230720-4_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-4) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../112-libwebpdemux2_1.3.2-0.4+b1_arm64.deb ... Unpacking libwebpdemux2:arm64 (1.3.2-0.4+b1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../113-libwebpmux3_1.3.2-0.4+b1_arm64.deb ... Unpacking libwebpmux3:arm64 (1.3.2-0.4+b1) ... Selecting previously unselected package libxslt1.1:arm64. Preparing to unpack .../114-libxslt1.1_1.1.35-1+b1_arm64.deb ... Unpacking libxslt1.1:arm64 (1.1.35-1+b1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../115-python-matplotlib-data_3.6.3-2_all.deb ... Unpacking python-matplotlib-data (3.6.3-2) ... Selecting previously unselected package python3.12. Preparing to unpack .../116-python3.12_3.12.3-1_arm64.deb ... Unpacking python3.12 (3.12.3-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../117-python3-all_3.11.8-1_arm64.deb ... Unpacking python3-all (3.11.8-1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../118-python3.11-dev_3.11.9-1_arm64.deb ... Unpacking python3.11-dev (3.11.9-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../119-python3-dev_3.11.8-1_arm64.deb ... Unpacking python3-dev (3.11.8-1) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../120-python3.12-dev_3.12.3-1_arm64.deb ... Unpacking python3.12-dev (3.12.3-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../121-python3-all-dev_3.11.8-1_arm64.deb ... Unpacking python3-all-dev (3.11.8-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../122-python3-appdirs_1.4.4-4_all.deb ... Unpacking python3-appdirs (1.4.4-4) ... Selecting previously unselected package python3-attr. Preparing to unpack .../123-python3-attr_23.2.0-2_all.deb ... Unpacking python3-attr (23.2.0-2) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../124-python3-brotli_1.1.0-2+b3_arm64.deb ... Unpacking python3-brotli (1.1.0-2+b3) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../125-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../126-python3-numpy_1%3a1.26.4+ds-8_arm64.deb ... Unpacking python3-numpy (1:1.26.4+ds-8) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../127-python3-contourpy_1.0.7-3_arm64.deb ... Unpacking python3-contourpy (1.0.7-3) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../128-python3-cycler_0.12.1-1_all.deb ... Unpacking python3-cycler (0.12.1-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../129-python3-six_1.16.0-6_all.deb ... Unpacking python3-six (1.16.0-6) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../130-python3-dateutil_2.9.0-2_all.deb ... Unpacking python3-dateutil (2.9.0-2) ... Selecting previously unselected package python3-debian. Preparing to unpack .../131-python3-debian_0.1.49_all.deb ... Unpacking python3-debian (0.1.49) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../132-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../133-python3-scipy_1.11.4-6_arm64.deb ... Unpacking python3-scipy (1.11.4-6) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../134-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../135-python3-mpmath_1.3.0-1_all.deb ... Unpacking python3-mpmath (1.3.0-1) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../136-python3-sympy_1.12-7_all.deb ... Unpacking python3-sympy (1.12-7) ... Selecting previously unselected package python3-tz. Preparing to unpack .../137-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) ... Selecting previously unselected package python3-fs. Preparing to unpack .../138-python3-fs_2.4.16-4_all.deb ... Unpacking python3-fs (2.4.16-4) ... Selecting previously unselected package python3-lxml:arm64. Preparing to unpack .../139-python3-lxml_5.1.0-1_arm64.deb ... Unpacking python3-lxml:arm64 (5.1.0-1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../140-python3-lz4_4.0.2+dfsg-1+b3_arm64.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b3) ... Selecting previously unselected package unicode-data. Preparing to unpack .../141-unicode-data_15.1.0-1_all.deb ... Unpacking unicode-data (15.1.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../142-python3-fonttools_4.46.0-1_arm64.deb ... Unpacking python3-fonttools (4.46.0-1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../143-python3-kiwisolver_1.4.5-1_arm64.deb ... Unpacking python3-kiwisolver (1.4.5-1) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../144-python3-pil_10.3.0-2_arm64.deb ... Unpacking python3-pil:arm64 (10.3.0-2) ... Selecting previously unselected package python3-tk:arm64. Preparing to unpack .../145-python3-tk_3.12.3-1_arm64.deb ... Unpacking python3-tk:arm64 (3.12.3-1) ... Selecting previously unselected package python3-pil.imagetk:arm64. Preparing to unpack .../146-python3-pil.imagetk_10.3.0-2_arm64.deb ... Unpacking python3-pil.imagetk:arm64 (10.3.0-2) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../147-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../148-python3-packaging_24.0-1_all.deb ... Unpacking python3-packaging (24.0-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../149-python3-matplotlib_3.6.3-2_arm64.deb ... Unpacking python3-matplotlib (3.6.3-2) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../150-python3-pysam_0.22.0+ds-1+b2_arm64.deb ... Unpacking python3-pysam (0.22.0+ds-1+b2) ... Selecting previously unselected package swig. Preparing to unpack .../151-swig_4.2.1-1_arm64.deb ... Unpacking swig (4.2.1-1) ... Setting up libhtscodecs2:arm64 (1.6.0-1+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libgraphite2-3:arm64 (1.3.14-2) ... Setting up liblcms2-2:arm64 (2.14-2+b1) ... Setting up libsharpyuv0:arm64 (1.3.2-0.4+b1) ... Setting up libxau6:arm64 (1:1.0.9-1+b1) ... Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up swig (4.2.1-1) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libpython3.12-minimal:arm64 (3.12.3-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.61.0-1+b1) ... Setting up libdeflate0:arm64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b1) ... Setting up libcom-err2:arm64 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up libkrb5support0:arm64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sat May 11 06:15:42 UTC 2024. Universal Time is now: Sat May 11 06:15:42 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.80.1-1) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.2-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libfribidi0:arm64 (1.0.13-3+b1) ... Setting up libimagequant0:arm64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.43-5) ... Setting up libtcl8.6:arm64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.20.1-6+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:arm64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.3.2-0.4+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:arm64 (4.5.1+git230720-4) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.20.1-6+b1) ... Setting up libssh2-1t64:arm64 (1.11.0-4.1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up libwebpmux3:arm64 (1.3.2-0.4+b1) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:arm64 (1.3.2-0.4+b1) ... Setting up libldap-2.5-0:arm64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:arm64 (1.1.35-1+b1) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:arm64 (3.12.3-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libpython3.11t64:arm64 (3.11.9-1) ... Setting up libcurl3t64-gnutls:arm64 (8.7.1-5) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12t64:arm64 (3.12.3-1) ... Setting up libpython3.11-dev:arm64 (3.11.9-1) ... Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up libhts3t64:arm64 (1.19+ds-1.1+b1) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libpython3-dev:arm64 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libtk8.6:arm64 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:arm64 (3.12.3-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:arm64 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up libpython3-all-dev:arm64 (3.11.8-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3.12-dev (3.12.3-1) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-lxml:arm64 (5.1.0-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-pysam (0.22.0+ds-1+b2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-all (3.11.8-1) ... Setting up python3-tk:arm64 (3.12.3-1) ... Setting up 2to3 (3.11.8-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:arm64 (10.3.0-2) ... Setting up python3-debian (0.1.49) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-contourpy (1.0.7-3) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-matplotlib (3.6.3-2) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1078730/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1078730/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/htseq-2.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htseq_2.0.5-1_source.changes dpkg-buildpackage: info: source package htseq dpkg-buildpackage: info: source version 2.0.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/htseq-2.0.5' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /bin/sh: line 1: git: command not found /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running clean removing '/build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean /bin/sh: line 1: git: command not found /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running clean removing '/build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it # setup.py creates some symlinks in clean target # remove these links to keep source tree clean for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \ if [ -L ${link} ] ; then rm ${link} ; fi \ done make[1]: Leaving directory '/build/reproducible-path/htseq-2.0.5' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /bin/sh: line 1: git: command not found /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running config I: pybuild base:311: python3.11 setup.py config /bin/sh: line 1: git: command not found /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /bin/sh: line 1: git: command not found /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running build running build_py running preprocess Cython version 3.0.10 Deprecated command line option: -py3. Ignored, this option is no longer supported. creating /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/__init__.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/_HTSeq_internal.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/StretchVector.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq creating /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/__init__.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/qa.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/count.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/count_with_barcodes.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/utils.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/utils.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/features.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq creating /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/__init__.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/count_features_per_file.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_io_processor.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_stats.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features running build_ext building 'HTSeq._HTSeq' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/src aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/_HTSeq.c -o build/temp.linux-aarch64-cpython-312/src/_HTSeq.o -w aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/_HTSeq.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-aarch64-linux-gnu.so building 'HTSeq._StepVector' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/StepVector_wrap.cxx -o build/temp.linux-aarch64-cpython-312/src/StepVector_wrap.o -w cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/StepVector_wrap.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/htseq-qa -> build/scripts-3.12 copying and adjusting scripts/htseq-count -> build/scripts-3.12 copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.12 changing mode of build/scripts-3.12/htseq-qa from 644 to 755 changing mode of build/scripts-3.12/htseq-count from 644 to 755 changing mode of build/scripts-3.12/htseq-count-barcodes from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /bin/sh: line 1: git: command not found /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running build running build_py running preprocess Cython version 3.0.10 Deprecated command line option: -py3. Ignored, this option is no longer supported. creating /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/__init__.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/_HTSeq_internal.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/StretchVector.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq creating /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/__init__.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/qa.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/count.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/count_with_barcodes.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/utils.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/utils.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/features.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq creating /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/__init__.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/count_features_per_file.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_io_processor.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_stats.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features running build_ext building 'HTSeq._HTSeq' extension creating build/temp.linux-aarch64-cpython-311 creating build/temp.linux-aarch64-cpython-311/src aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/_HTSeq.c -o build/temp.linux-aarch64-cpython-311/src/_HTSeq.o -w aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/src/_HTSeq.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/_HTSeq.cpython-311-aarch64-linux-gnu.so building 'HTSeq._StepVector' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/StepVector_wrap.cxx -o build/temp.linux-aarch64-cpython-311/src/StepVector_wrap.o -w cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/src/StepVector_wrap.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/_StepVector.cpython-311-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting scripts/htseq-qa -> build/scripts-3.11 copying and adjusting scripts/htseq-count -> build/scripts-3.11 copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.11 changing mode of build/scripts-3.11/htseq-qa from 644 to 755 changing mode of build/scripts-3.11/htseq-count from 644 to 755 changing mode of build/scripts-3.11/htseq-count-barcodes from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build; python3.12 -m unittest discover -v /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__init__.py:583: SyntaxWarning: invalid escape sequence '\=' _re_vcf_meta_comment = re.compile("^##([a-zA-Z]+)\=(.*)$") /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py:14: SyntaxWarning: invalid escape sequence '\s' _re_attr_main = re.compile("\s*([^\s\=]+)[\s=]+(.*)") /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py:15: SyntaxWarning: invalid escape sequence '\s' _re_attr_empty = re.compile("^\s*$") /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py:16: SyntaxWarning: invalid escape sequence '\s' _re_gff_meta_comment = re.compile("##\s*(\S+)\s+(\S*)") ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-htseq/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/htseq-2.0.5/debian/python3-htseq /bin/sh: line 1: git: command not found /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running preprocess Cython version 3.0.10 Deprecated command line option: -py3. Ignored, this option is no longer supported. copying HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq running build_ext building 'HTSeq._HTSeq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/_HTSeq.c -o build/temp.linux-aarch64-cpython-312/src/_HTSeq.o -w aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/_HTSeq.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-aarch64-linux-gnu.so building 'HTSeq._StepVector' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/StepVector_wrap.cxx -o build/temp.linux-aarch64-cpython-312/src/StepVector_wrap.o -w cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/StepVector_wrap.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-aarch64-linux-gnu.so running build_scripts running install_lib creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12 creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/features.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/StretchVector.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/StepVector.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/utils.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__pycache__ creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/__init__.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/utils.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/qa.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/__init__.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/StretchVector.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq_internal.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__init__.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/StepVector.py to StepVector.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/features.py to features.cpython-312.pyc /usr/lib/python3.12/dist-packages/HTSeq/features.py:14: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/HTSeq/features.py:15: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/HTSeq/features.py:16: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count.py to count.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/qa.py to qa.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/HTSeq/__init__.py:583: SyntaxWarning: invalid escape sequence '\=' running install_egg_info running egg_info creating HTSeq.egg-info writing HTSeq.egg-info/PKG-INFO writing dependency_links to HTSeq.egg-info/dependency_links.txt writing requirements to HTSeq.egg-info/requires.txt writing top-level names to HTSeq.egg-info/top_level.txt writing manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'todo.txt' adding license file 'LICENSE' writing manifest file 'HTSeq.egg-info/SOURCES.txt' Copying HTSeq.egg-info to /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq-2.0.5.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin copying build/scripts-3.12/htseq-count-barcodes -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin copying build/scripts-3.12/htseq-count -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin copying build/scripts-3.12/htseq-qa -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin changing mode of /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755 changing mode of /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin/htseq-count to 755 changing mode of /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin/htseq-qa to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/htseq-2.0.5/debian/python3-htseq /bin/sh: line 1: git: command not found /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running preprocess Cython version 3.0.10 Deprecated command line option: -py3. Ignored, this option is no longer supported. copying HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq running build_ext building 'HTSeq._HTSeq' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/_HTSeq.c -o build/temp.linux-aarch64-cpython-311/src/_HTSeq.o -w aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/src/_HTSeq.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/_HTSeq.cpython-311-aarch64-linux-gnu.so building 'HTSeq._StepVector' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/StepVector_wrap.cxx -o build/temp.linux-aarch64-cpython-311/src/StepVector_wrap.o -w cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/src/StepVector_wrap.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/_StepVector.cpython-311-aarch64-linux-gnu.so running build_scripts running install_lib creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11 creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/_StepVector.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/_HTSeq.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/features.cpython-311.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/_version.cpython-311.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/utils.cpython-311.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-311.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/StretchVector.cpython-311.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/StepVector.cpython-311.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/features.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/utils.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/__pycache__ creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/__init__.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/utils.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/qa.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/__init__.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/StretchVector.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/_HTSeq_internal.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.11_htseq/build/HTSeq/__init__.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/_version.py to _version.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/StepVector.py to StepVector.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/features.py to features.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count.py to count.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/qa.py to qa.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-311.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing HTSeq.egg-info/PKG-INFO writing dependency_links to HTSeq.egg-info/dependency_links.txt writing requirements to HTSeq.egg-info/requires.txt writing top-level names to HTSeq.egg-info/top_level.txt reading manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'todo.txt' adding license file 'LICENSE' writing manifest file 'HTSeq.egg-info/SOURCES.txt' Copying HTSeq.egg-info to /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq-2.0.5.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.11/htseq-count-barcodes -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin copying build/scripts-3.11/htseq-count -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin copying build/scripts-3.11/htseq-qa -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin changing mode of /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755 changing mode of /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin/htseq-count to 755 changing mode of /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin/htseq-qa to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/htseq-2.0.5' dh_python3 dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/htseq-2.0.5' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-htseq' in '../python3-htseq_2.0.5-1_arm64.deb'. dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_2.0.5-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../htseq_2.0.5-1_arm64.buildinfo dpkg-genchanges --build=binary -O../htseq_2.0.5-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1078730/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1078730/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1078730 and its subdirectories I: Current time: Sat May 11 20:21:04 +14 2024 I: pbuilder-time-stamp: 1715408464