I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 3 20:28:34 +14 2024 I: pbuilder-time-stamp: 1719988114 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.8.0-1.dsc] I: copying [./fenicsx-performance-tests_0.8.0.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.8.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat May 4 12:08:06 2024 gpgv: using RSA key 1B5D04B1E507BBF03669E2B801F35FC33E73AF8C gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.8.0-1.dsc: no acceptable signature found dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.8.0 dpkg-source: info: unpacking fenicsx-performance-tests_0.8.0.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.8.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3155023/tmp/hooks/D01_modify_environment starting debug: Running on codethink02-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jul 3 06:28 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3155023/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3155023/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=1f4eb2d98f664d5588a9609e3727c9fc LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3155023 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Yxj0NunS/pbuilderrc_TgFs --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Yxj0NunS/b2 --logfile b2/build.log fenicsx-performance-tests_0.8.0-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-22-cloud-arm64 #1 SMP Debian 6.1.94-1 (2024-06-21) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3155023/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.8~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 1:0.8~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-real-dev; however: Package libdolfinx-real-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2{a} libadios2-mpi-auxiliary-dev{a} libadios2-mpi-c++11-2{a} libadios2-mpi-c++11-dev{a} libadios2-mpi-core-2{a} libadios2-mpi-core-dev{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libbasix-dev{a} libbasix0.8{a} libblas-dev{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.8{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-13-dev{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1t64{a} libhdf5-openmpi-cpp-103-1t64{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102t64{a} libhdf5-openmpi-hl-100t64{a} libhdf5-openmpi-hl-cpp-100t64{a} libhdf5-openmpi-hl-fortran-100t64{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.29.0{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmumps-5.6t64{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3t64{a} libparpack2-dev{a} libparpack2t64{a} libparu0{a} libpciaccess0{a} libpetsc-real3.20{a} libpetsc-real3.20-dev{a} libpetsc3.20-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.20{a} libslepc-real3.20-dev{a} libsodium23{a} libspex3{a} libspqr4{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu6{a} libsz2{a} libtool{a} libtrilinos-amesos-13.2{a} libtrilinos-aztecoo-13.2{a} libtrilinos-aztecoo-dev{a} libtrilinos-epetra-13.2{a} libtrilinos-epetraext-13.2{a} libtrilinos-galeri-13.2{a} libtrilinos-ifpack-13.2{a} libtrilinos-kokkos-13.2{a} libtrilinos-ml-13.2{a} libtrilinos-ml-dev{a} libtrilinos-teuchos-13.2{a} libtrilinos-trilinosss-13.2{a} libtrilinos-trilinosss-dev{a} libtrilinos-triutils-13.2{a} libtrilinos-zoltan-13.2{a} libtrilinos-zoltan-dev{a} libuchardet0{a} libucx0{a} libumfpack6{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libz3-4{a} libzmq5{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-distutils{a} python3-ffcx{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3-ufl{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} trilinos-dev{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb gdb-minimal javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.20-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix wget xauth zsh 0 packages upgraded, 318 newly installed, 0 to remove and 0 not upgraded. Need to get 243 MB of archives. After unpacking 1231 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-1 [197 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.1-9 [95.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-2 [1394 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20240517-1 [88.9 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libcbor0.10 arm64 0.10.2-1.1 [27.0 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libfido2-1 arm64 1.15.0-1 [74.1 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.2-1 [31.8 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.2-1 [80.4 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 33 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.2-1 [307 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.2-1 [125 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 openssh-client arm64 1:9.7p1-7 [901 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-1 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.2-2.1 [320 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-1 [173 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.62.1-1 [71.2 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-5 [207 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.8.0-1 [411 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-5 [142 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.29.6-1 [2168 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.29.6-1 [9060 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.16 [88.6 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 64 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-1 [1526 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.16 [891 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libgfortran-13-dev arm64 13.3.0-1 [401 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.3.0-1 [8830 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 gfortran-13 arm64 13.3.0-1 [13.2 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7 [1288 B] Get: 76 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:13.2.0-7 [1428 B] Get: 77 http://deb.debian.org/debian trixie/main arm64 libnl-3-200 arm64 3.7.0-0.3 [56.5 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libnl-route-3-200 arm64 3.7.0-0.3 [165 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libibverbs1 arm64 50.0-2+b1 [58.2 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 ibverbs-providers arm64 50.0-2+b1 [315 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-4+b1 [194 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libadios2-common-c++11-dev all 2.9.2+dfsg1-13 [23.0 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libadios2-common-core-dev arm64 2.9.2+dfsg1-13+b1 [114 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 librdmacm1t64 arm64 50.0-2+b1 [66.6 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libfabric1 arm64 1.17.0-3+b1 [479 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libadios2-mpi-auxiliary-2 arm64 2.9.2+dfsg1-13+b1 [375 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libadios2-mpi-auxiliary-dev arm64 2.9.2+dfsg1-13+b1 [21.1 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10 [125 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [54.1 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libhwloc15 arm64 2.11.0-1 [140 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libmunge2 arm64 0.5.15-4 [19.2 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libpciaccess0 arm64 0.17-3+b1 [51.1 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libxnvctrl0 arm64 535.171.04-1 [13.8 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b1 [39.3 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libhwloc-plugins arm64 2.11.0-1 [17.8 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libpmix2t64 arm64 5.0.2-3 [580 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.8.12-3.1+b2 [6508 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libllvm17t64 arm64 1:17.0.6-12+b1 [21.3 MB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b1 [12.1 MB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libdrm-common all 2.4.121-2 [7972 B] Get: 107 http://deb.debian.org/debian trixie/main arm64 libdrm2 arm64 2.4.121-2 [37.6 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libdrm-amdgpu1 arm64 2.4.121-2 [21.6 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libnuma1 arm64 2.0.18-1 [21.4 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libhsakmt1 arm64 5.7.0-1 [57.6 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libhsa-runtime64-1 arm64 5.7.1-2 [276 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libamdhip64-5 arm64 5.7.1-3 [8698 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libucx0 arm64 1.16.0+ds-5 [938 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libopenmpi3t64 arm64 4.1.6-13.3 [2170 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Get: 117 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-103-1t64 arm64 1.10.10+repack-3.3 [1081 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpugixml1v5 arm64 1.14-0.1+b1 [78.6 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libsodium23 arm64 1.0.18-1+b1 [118 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libyaml-cpp0.8 arm64 0.8.0+dfsg-6+b1 [119 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1 [204 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1 [151 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libzmq5 arm64 4.3.5-1+b2 [251 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libadios2-mpi-core-2 arm64 2.9.2+dfsg1-13+b1 [1447 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libadios2-mpi-c++11-2 arm64 2.9.2+dfsg1-13+b1 [178 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libadios2-mpi-core-dev arm64 2.9.2+dfsg1-13+b1 [78.2 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libadios2-mpi-c++11-dev arm64 2.9.2+dfsg1-13+b1 [9212 B] Get: 129 http://deb.debian.org/debian trixie/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libsuitesparseconfig7 arm64 1:7.7.0+dfsg-2 [22.3 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libamd3 arm64 1:7.7.0+dfsg-2 [36.5 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libarpack2t64 arm64 3.9.1-1.1+b1 [81.4 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-3 [98.2 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-3 [3584 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libarpack2-dev arm64 3.9.1-1.1+b1 [98.2 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libbasix0.8 arm64 0.8.0-7 [332 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-3 [26.0 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-3 [13.9 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libbasix-dev arm64 0.8.0-7 [62.4 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3 [10.6 MB] Get: 146 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83.0 arm64 1.83.0-3 [233 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83-dev arm64 1.83.0-3 [234 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-3 [239 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libboost-chrono1.83-dev arm64 1.83.0-3 [244 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libboost-chrono-dev arm64 1.83.0.2+b2 [4212 B] Get: 151 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83.0 arm64 1.83.0-3 [230 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83.0 arm64 1.83.0-3 [324 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83-dev arm64 1.83.0-3 [372 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83-dev arm64 1.83.0-3 [239 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 156 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3 [273 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-3 [230 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-3 [231 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-3 [291 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 161 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-3 [311 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-4+b1 [10.2 MB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-3 [333 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-3 [260 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 libboost-math1.83.0 arm64 1.83.0-3 [463 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libboost-math1.83-dev arm64 1.83.0-3 [518 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libboost-math-dev arm64 1.83.0.2+b2 [3784 B] Get: 169 http://deb.debian.org/debian trixie/main arm64 libboost-mpi1.83.0 arm64 1.83.0-3 [267 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 openmpi-common all 4.1.6-13.3 [169 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 libnl-3-dev arm64 3.7.0-0.3 [101 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libnl-route-3-dev arm64 3.7.0-0.3 [197 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libibverbs-dev arm64 50.0-2+b1 [626 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libnuma-dev arm64 2.0.18-1 [37.4 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libltdl7 arm64 2.4.7-7+b1 [393 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libltdl-dev arm64 2.4.7-7+b1 [165 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libhwloc-dev arm64 2.11.0-1 [235 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10 [102 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10 [60.0 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libevent-dev arm64 2.1.12-stable-10 [303 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libpmix-dev arm64 5.0.2-3 [3921 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 openmpi-bin arm64 4.1.6-13.3 [225 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 libopenmpi-dev arm64 4.1.6-13.3 [972 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 mpi-default-dev arm64 1.15 [3152 B] Get: 189 http://deb.debian.org/debian trixie/main arm64 libboost-mpi1.83-dev arm64 1.83.0-3 [290 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 libboost-mpi-dev arm64 1.83.0.2+b2 [3668 B] Get: 191 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3 [332 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83-dev arm64 1.83.0-3 [369 kB] Get: 193 http://deb.debian.org/debian trixie/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 194 http://deb.debian.org/debian trixie/main arm64 libboost-serialization-dev arm64 1.83.0.2+b2 [3816 B] Get: 195 http://deb.debian.org/debian trixie/main arm64 libboost-thread1.83.0 arm64 1.83.0-3 [265 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 libboost-thread1.83-dev arm64 1.83.0-3 [276 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B] Get: 198 http://deb.debian.org/debian trixie/main arm64 libboost-timer1.83.0 arm64 1.83.0-3 [234 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 libboost-timer1.83-dev arm64 1.83.0-3 [236 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 libboost-timer-dev arm64 1.83.0.2+b2 [3712 B] Get: 201 http://deb.debian.org/debian trixie/main arm64 libbtf2 arm64 1:7.7.0+dfsg-2 [23.0 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 libc6-dbg arm64 2.38-13 [6166 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 libcamd3 arm64 1:7.7.0+dfsg-2 [33.3 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 libccolamd3 arm64 1:7.7.0+dfsg-2 [36.1 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 libcolamd3 arm64 1:7.7.0+dfsg-2 [29.9 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 libcholmod5 arm64 1:7.7.0+dfsg-2 [507 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 libcombblas2.0.0t64 arm64 2.0.0-3.1+b1 [277 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 libcurl4-openssl-dev arm64 8.8.0-1 [532 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 libcxsparse4 arm64 1:7.7.0+dfsg-2 [73.7 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 libfftw3-double3 arm64 3.3.10-1+b2 [329 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 libfftw3-long3 arm64 3.3.10-1+b2 [532 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 libfftw3-single3 arm64 3.3.10-1+b2 [497 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 libfftw3-mpi3 arm64 3.3.10-1+b2 [55.0 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 libmetis5 arm64 5.1.0.dfsg-7+b1 [158 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 libptscotch-7.0 arm64 7.0.4-2 [605 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 libsuperlu-dist8 arm64 8.2.1+dfsg1-1+b2 [511 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 libhypre-2.29.0 arm64 2.29.0-2 [1422 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 libklu2 arm64 1:7.7.0+dfsg-2 [76.3 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 mpi-default-bin arm64 1.15 [2408 B] Get: 220 http://deb.debian.org/debian trixie/main arm64 libscalapack-openmpi2.2 arm64 2.2.1-3.1 [1186 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 libmumps-5.6t64 arm64 5.6.2-2.1+b1 [1610 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 libspqr4 arm64 1:7.7.0+dfsg-2 [122 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 libsuperlu6 arm64 6.0.1+dfsg1-1+b1 [141 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 libscotch-7.0 arm64 7.0.4-2 [362 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 libtrilinos-kokkos-13.2 arm64 13.2.0-6 [98.5 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 libtrilinos-teuchos-13.2 arm64 13.2.0-6 [1133 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 libtrilinos-epetra-13.2 arm64 13.2.0-6 [375 kB] Get: 228 http://deb.debian.org/debian trixie/main arm64 libtrilinos-triutils-13.2 arm64 13.2.0-6 [111 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 libtrilinos-epetraext-13.2 arm64 13.2.0-6 [388 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 libtrilinos-trilinosss-13.2 arm64 13.2.0-6 [76.5 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 libtrilinos-amesos-13.2 arm64 13.2.0-6 [107 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 libtrilinos-aztecoo-13.2 arm64 13.2.0-6 [187 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 libtrilinos-galeri-13.2 arm64 13.2.0-6 [84.6 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 libtrilinos-ifpack-13.2 arm64 13.2.0-6 [430 kB] Get: 235 http://deb.debian.org/debian trixie/main arm64 libtrilinos-zoltan-13.2 arm64 13.2.0-6 [327 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 libtrilinos-ml-13.2 arm64 13.2.0-6 [857 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 libumfpack6 arm64 1:7.7.0+dfsg-2 [214 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 libpetsc-real3.20 arm64 3.20.6+dfsg1-1 [4999 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 libparpack2t64 arm64 3.9.1-1.1+b1 [75.9 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 libslepc-real3.20 arm64 3.20.2+dfsg1-2 [869 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 libdolfinx-real0.8 arm64 1:0.8.0-9 [509 kB] Get: 243 http://deb.debian.org/debian trixie/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 libldl3 arm64 1:7.7.0+dfsg-2 [22.7 kB] Get: 245 http://deb.debian.org/debian trixie/main arm64 libsuitesparse-mongoose3 arm64 1:7.7.0+dfsg-2 [42.1 kB] Get: 246 http://deb.debian.org/debian trixie/main arm64 librbio4 arm64 1:7.7.0+dfsg-2 [36.5 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 libspex3 arm64 1:7.7.0+dfsg-2 [51.7 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 libparu0 arm64 1:7.7.0+dfsg-2 [56.5 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 libsuitesparse-dev arm64 1:7.7.0+dfsg-2 [1253 kB] Get: 250 http://deb.debian.org/debian trixie/main arm64 libscotch-dev arm64 7.0.4-2 [1519 kB] Get: 251 http://deb.debian.org/debian trixie/main arm64 libptscotch-dev arm64 7.0.4-2 [1272 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 libscalapack-openmpi-dev arm64 2.2.1-3.1 [9772 B] Get: 253 http://deb.debian.org/debian trixie/main arm64 libscalapack-mpi-dev arm64 2.2.1-3.1 [4916 B] Get: 254 http://deb.debian.org/debian trixie/main arm64 libfftw3-bin arm64 3.3.10-1+b2 [43.2 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 libfftw3-dev arm64 3.3.10-1+b2 [1213 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 libfftw3-mpi-dev arm64 3.3.10-1+b2 [59.7 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.2.2-1 [3090 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 opencl-c-headers all 3.0~2024.05.08-1 [46.1 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 opencl-clhpp-headers all 3.0~2024.05.08-1 [49.8 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 ocl-icd-opencl-dev arm64 2.3.2-1+b1 [8656 B] Get: 261 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-fortran-102t64 arm64 1.10.10+repack-3.3 [88.1 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-hl-100t64 arm64 1.10.10+repack-3.3 [60.0 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-hl-fortran-100t64 arm64 1.10.10+repack-3.3 [38.4 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-cpp-103-1t64 arm64 1.10.10+repack-3.3 [118 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-hl-cpp-100t64 arm64 1.10.10+repack-3.3 [21.3 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 267 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB] Get: 268 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 libhdf5-openmpi-dev arm64 1.10.10+repack-3.3 [2766 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 libhdf5-mpi-dev arm64 1.10.10+repack-3.3 [15.5 kB] Get: 271 http://deb.debian.org/debian trixie/main arm64 libsuperlu-dev arm64 6.0.1+dfsg1-1+b1 [21.8 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 libsuperlu-dist-dev arm64 8.2.1+dfsg1-1+b2 [844 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 274 http://deb.debian.org/debian trixie/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get: 275 http://deb.debian.org/debian trixie/main arm64 libxau-dev arm64 1:1.0.9-1+b1 [21.5 kB] Get: 276 http://deb.debian.org/debian trixie/main arm64 libxdmcp-dev arm64 1:1.1.2-3+b1 [40.6 kB] Get: 277 http://deb.debian.org/debian trixie/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 278 http://deb.debian.org/debian trixie/main arm64 libxcb1-dev arm64 1.17.0-2 [183 kB] Get: 279 http://deb.debian.org/debian trixie/main arm64 libx11-dev arm64 2:1.8.7-1+b1 [861 kB] Get: 280 http://deb.debian.org/debian trixie/main arm64 libyaml-dev arm64 0.2.5-1+b1 [61.1 kB] Get: 281 http://deb.debian.org/debian trixie/main arm64 libpetsc3.20-dev-common all 3.20.6+dfsg1-1 [297 kB] Get: 282 http://deb.debian.org/debian trixie/main arm64 libhypre-dev arm64 2.29.0-2 [1741 kB] Get: 283 http://deb.debian.org/debian trixie/main arm64 libmumps-headers-dev all 5.6.2-2.1 [34.7 kB] Get: 284 http://deb.debian.org/debian trixie/main arm64 libmumps-dev arm64 5.6.2-2.1+b1 [1615 kB] Get: 285 http://deb.debian.org/debian trixie/main arm64 trilinos-dev arm64 13.2.0-6 [12.5 kB] Get: 286 http://deb.debian.org/debian trixie/main arm64 libtrilinos-aztecoo-dev arm64 13.2.0-6 [50.8 kB] Get: 287 http://deb.debian.org/debian trixie/main arm64 libtrilinos-trilinosss-dev arm64 13.2.0-6 [33.4 kB] Get: 288 http://deb.debian.org/debian trixie/main arm64 libtrilinos-ml-dev arm64 13.2.0-6 [117 kB] Get: 289 http://deb.debian.org/debian trixie/main arm64 libtrilinos-zoltan-dev arm64 13.2.0-6 [33.8 kB] Get: 290 http://deb.debian.org/debian trixie/main arm64 valgrind arm64 1:3.20.0-2.1 [7947 kB] Get: 291 http://deb.debian.org/debian trixie/main arm64 valgrind-mpi arm64 1:3.20.0-2.1 [121 kB] Get: 292 http://deb.debian.org/debian trixie/main arm64 libpetsc-real3.20-dev arm64 3.20.6+dfsg1-1 [6651 kB] Get: 293 http://deb.debian.org/debian trixie/main arm64 libparpack2-dev arm64 3.9.1-1.1+b1 [90.2 kB] Get: 294 http://deb.debian.org/debian trixie/main arm64 libslepc-real3.20-dev arm64 3.20.2+dfsg1-2 [5674 kB] Get: 295 http://deb.debian.org/debian trixie/main arm64 libdolfinx-real-dev arm64 1:0.8.0-9 [46.5 kB] Get: 296 http://deb.debian.org/debian trixie/main arm64 libpugixml-dev arm64 1.14-0.1+b1 [101 kB] Get: 297 http://deb.debian.org/debian trixie/main arm64 libxml2-dev arm64 2.9.14+dfsg-1.3+b3 [745 kB] Get: 298 http://deb.debian.org/debian trixie/main arm64 python3-cffi-backend arm64 1.16.0-2+b2 [109 kB] Get: 299 http://deb.debian.org/debian trixie/main arm64 python3-ply all 3.11-6 [63.7 kB] Get: 300 http://deb.debian.org/debian trixie/main arm64 python3-pycparser all 2.22-1 [78.0 kB] Get: 301 http://deb.debian.org/debian trixie/main arm64 python3-cffi all 1.16.0-2 [88.5 kB] Get: 302 http://deb.debian.org/debian trixie/main arm64 libpython3.11t64 arm64 3.11.9-1 [1814 kB] Get: 303 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.2-1 [278 kB] Get: 304 http://deb.debian.org/debian trixie/main arm64 libpython3.11-dev arm64 3.11.9-1 [4358 kB] Get: 305 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.11.8-1 [9564 B] Get: 306 http://deb.debian.org/debian trixie/main arm64 python3.11-dev arm64 3.11.9-1 [501 kB] Get: 307 http://deb.debian.org/debian trixie/main arm64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 308 http://deb.debian.org/debian trixie/main arm64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 309 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 310 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.2.6-9 [150 kB] Get: 311 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.11.8-1 [26.1 kB] Get: 312 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 313 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [4221 kB] Get: 314 http://deb.debian.org/debian trixie/main arm64 python3-ufl all 2024.1.0-1 [149 kB] Get: 315 http://deb.debian.org/debian trixie/main arm64 python3-basix arm64 0.8.0-7 [134 kB] Get: 316 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 317 http://deb.debian.org/debian trixie/main arm64 python3-ffcx all 1:0.8.0-1 [100 kB] Get: 318 http://deb.debian.org/debian trixie/main arm64 libdolfinx-dev arm64 1:0.8.0-9 [208 kB] Fetched 243 MB in 5s (52.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20118 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21110 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_arm64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-4_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-4_arm64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-1_arm64.deb ... Unpacking gettext-base (0.22.5-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.1-9_arm64.deb ... Unpacking bsdextrautils (2.40.1-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.12.1-2_arm64.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../013-libedit2_3.1-20240517-1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20240517-1) ... Selecting previously unselected package libcbor0.10:arm64. Preparing to unpack .../014-libcbor0.10_0.10.2-1.1_arm64.deb ... Unpacking libcbor0.10:arm64 (0.10.2-1.1) ... Selecting previously unselected package libfido2-1:arm64. Preparing to unpack .../015-libfido2-1_1.15.0-1_arm64.deb ... Unpacking libfido2-1:arm64 (1.15.0-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../016-libkrb5support0_1.21.2-1_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.2-1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../017-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../018-libk5crypto3_1.21.2-1_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.2-1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../019-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../020-libkrb5-3_1.21.2-1_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.2-1) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../021-libgssapi-krb5-2_1.21.2-1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.2-1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../022-openssh-client_1%3a9.7p1-7_arm64.deb ... Unpacking openssh-client (1:9.7p1-7) ... Selecting previously unselected package m4. Preparing to unpack .../023-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../024-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. 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Setting up libkrb5support0:arm64 (1.21.2-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jul 3 06:31:25 UTC 2024. Universal Time is now: Wed Jul 3 06:31:25 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:arm64 (1.83.0-3) ... Setting up libtrilinos-trilinosss-13.2:arm64 (13.2.0-6) ... Setting up libboost-serialization1.83.0:arm64 (1.83.0-3) ... Setting up libbtf2:arm64 (1:7.7.0+dfsg-2) ... Setting up libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:arm64 (4.8.12-3.1+b2) ... Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libpkgconf3:arm64 (1.8.1-3) ... Setting up libmunge2:arm64 (0.5.15-4) ... Setting up libexpat1-dev:arm64 (2.6.2-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libboost-program-options-dev:arm64 (1.83.0.2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3) ... Setting up libboost-chrono1.83.0t64:arm64 (1.83.0-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:arm64 (2:4.0.4-4) ... Setting up libssl-dev:arm64 (3.2.2-1) ... Setting up libpng16-16t64:arm64 (1.6.43-5) ... Setting up libhwloc15:arm64 (2.11.0-1) ... Setting up autopoint (0.22.5-1) ... Setting up libjsoncpp25:arm64 (1.9.5-6+b2) ... Setting up icu-devtools (72.1-4+b1) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up libk5crypto3:arm64 (1.21.2-1) ... Setting up libltdl7:arm64 (2.4.7-7+b1) ... Setting up opencl-c-headers (3.0~2024.05.08-1) ... Setting up libfftw3-double3:arm64 (3.3.10-1+b2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:arm64 (14-20240330-1) ... Setting up libboost-atomic1.83-dev:arm64 (1.83.0-3) ... Setting up autoconf (2.71-3) ... Setting up libmumps-headers-dev (5.6.2-2.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libnuma1:arm64 (2.0.18-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:arm64 (2.3.2-1+b1) ... Setting up librhash0:arm64 (1.4.3-3+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libnl-3-200:arm64 (3.7.0-0.3) ... Setting up openmpi-common (4.1.6-13.3) ... Setting up libsuitesparseconfig7:arm64 (1:7.7.0+dfsg-2) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up cmake-data (3.29.6-1) ... Setting up libkrb5-3:arm64 (1.21.2-1) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libboost-system1.83-dev:arm64 (1.83.0-3) ... Setting up libssh2-1t64:arm64 (1.11.0-5) ... Setting up libboost-math1.83.0:arm64 (1.83.0-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:arm64 (1.15.0-1) ... Setting up valgrind (1:3.20.0-2.1) ... Setting up libgfortran-13-dev:arm64 (13.3.0-1) ... Setting up libdrm-common (2.4.121-2) ... Setting up valgrind-mpi (1:3.20.0-2.1) ... Setting up readline-common (8.2-4) ... Setting up libicu-dev:arm64 (72.1-4+b1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libtrilinos-trilinosss-dev:arm64 (13.2.0-6) ... Setting up libblas-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libsz2:arm64 (1.1.3-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-1) ... Setting up libarpack2t64:arm64 (3.9.1-1.1+b1) ... Setting up libamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libxau-dev:arm64 (1:1.0.9-1+b1) ... Setting up libboost-chrono1.83-dev:arm64 (1.83.0-3) ... Setting up libyaml-dev:arm64 (0.2.5-1+b1) ... Setting up libboost-math1.83-dev:arm64 (1.83.0-3) ... Setting up libtool (2.4.7-7) ... Setting up libcolamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libspex3:arm64 (1:7.7.0+dfsg-2) ... Setting up libboost-chrono-dev:arm64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-1+b2) ... Setting up libsuitesparse-mongoose3:arm64 (1:7.7.0+dfsg-2) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libboost-math-dev:arm64 (1.83.0.2+b2) ... Setting up libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libpugixml-dev:arm64 (1.14-0.1+b1) ... Setting up libaec-dev:arm64 (1.1.3-1) ... Setting up libcxsparse4:arm64 (1:7.7.0+dfsg-2) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-3) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up gfortran-13-aarch64-linux-gnu (13.3.0-1) ... Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-3) ... Setting up libsuperlu6:arm64 (6.0.1+dfsg1-1+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-1) ... Setting up libcamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up pkgconf:arm64 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:arm64 (2.0.18-1) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.3) ... Setting up libxnvctrl0:arm64 (535.171.04-1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:arm64 (2.4.7-7+b1) ... Setting up libxdmcp-dev:arm64 (1:1.1.2-3+b1) ... Setting up libxml2-dev:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:arm64 (1.83.0-3) ... Setting up libllvm17t64:arm64 (1:17.0.6-12+b1) ... Setting up gfortran-13 (13.3.0-1) ... Setting up librbio4:arm64 (1:7.7.0+dfsg-2) ... Setting up libboost-date-time1.83-dev:arm64 (1.83.0-3) ... Setting up opencl-clhpp-headers (3.0~2024.05.08-1) ... Setting up liblapack-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:arm64 (1.21.2-1) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-3) ... Setting up pkg-config:arm64 (1.8.1-3) ... Setting up libboost-serialization-dev:arm64 (1.83.0.2+b2) ... Setting up libjs-sphinxdoc (7.2.6-9) ... Setting up ocl-icd-opencl-dev:arm64 (2.3.2-1+b1) ... Setting up libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libccolamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:arm64 (2.4.121-2) ... Setting up libnl-3-dev:arm64 (3.7.0-0.3) ... Setting up groff-base (1.23.0-4) ... Setting up libbasix0.8:arm64 (0.8.0-7) ... Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libhwloc-dev:arm64 (2.11.0-1) ... Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up libsuperlu-dev:arm64 (6.0.1+dfsg1-1+b1) ... Setting up libbasix-dev:arm64 (0.8.0-7) ... Setting up libarchive13t64:arm64 (3.7.2-2.1) ... Setting up libfftw3-dev:arm64 (3.3.10-1+b2) ... Setting up libboost-timer-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Setting up libdrm-amdgpu1:arm64 (2.4.121-2) ... Setting up libboost-thread1.83-dev:arm64 (1.83.0-3) ... Setting up libibverbs1:arm64 (50.0-2+b1) ... Setting up libcholmod5:arm64 (1:7.7.0+dfsg-2) ... Setting up libarpack2-dev:arm64 (3.9.1-1.1+b1) ... Setting up libxcb1-dev:arm64 (1.17.0-2) ... Setting up libzmq5:arm64 (4.3.5-1+b2) ... Setting up libcurl4t64:arm64 (8.8.0-1) ... Setting up ibverbs-providers:arm64 (50.0-2+b1) ... Setting up libspqr4:arm64 (1:7.7.0+dfsg-2) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-3) ... Setting up openssh-client (1:9.7p1-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up libpython3.11t64:arm64 (3.11.9-1) ... Setting up libx11-dev:arm64 (2:1.8.7-1+b1) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up libhwloc-plugins:arm64 (2.11.0-1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libnl-route-3-dev:arm64 (3.7.0-0.3) ... Setting up libcurl4-openssl-dev:arm64 (8.8.0-1) ... Setting up libklu2:arm64 (1:7.7.0+dfsg-2) ... Setting up libpython3.11-dev:arm64 (3.11.9-1) ... Setting up libevent-dev (2.1.12-stable-10) ... Setting up libpmix2t64:arm64 (5.0.2-3) ... Setting up libumfpack6:arm64 (1:7.7.0+dfsg-2) ... Setting up cmake (3.29.6-1) ... Setting up librdmacm1t64:arm64 (50.0-2+b1) ... Setting up libpmix-dev:arm64 (5.0.2-3) ... Setting up libhsakmt1:arm64 (5.7.0-1) ... Setting up libboost-thread-dev:arm64 (1.83.0.2+b2) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up libfabric1:arm64 (1.17.0-3+b1) ... Setting up python3.11 (3.11.9-1) ... Setting up libpython3-dev:arm64 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libadios2-mpi-auxiliary-2:arm64 (2.9.2+dfsg1-13+b1) ... Setting up debhelper (13.16) ... Setting up libparu0:arm64 (1:7.7.0+dfsg-2) ... Setting up python3 (3.11.8-1) ... Setting up libibverbs-dev:arm64 (50.0-2+b1) ... Setting up libadios2-mpi-auxiliary-dev:arm64 (2.9.2+dfsg1-13+b1) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-cffi-backend:arm64 (1.16.0-2+b2) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libsuitesparse-dev:arm64 (1:7.7.0+dfsg-2) ... Setting up python3-ply (3.11-6) ... Setting up python3-pycparser (2.22-1) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up libucx0:arm64 (1.16.0+ds-5) ... Setting up python3-ufl (2024.1.0-1) ... Setting up python3-cffi (1.16.0-2) ... Setting up libopenmpi3t64:arm64 (4.1.6-13.3) ... Setting up libparpack2t64:arm64 (3.9.1-1.1+b1) ... Setting up libboost-mpi1.83.0 (1.83.0-3) ... Setting up openmpi-bin (4.1.6-13.3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-basix (0.8.0-7) ... Setting up libptscotch-7.0:arm64 (7.0.4-2) ... Setting up mpi-default-bin (1.15) ... Setting up libcombblas2.0.0t64:arm64 (2.0.0-3.1+b1) ... Setting up libfftw3-mpi3:arm64 (3.3.10-1+b2) ... Setting up libtrilinos-zoltan-13.2:arm64 (13.2.0-6) ... Setting up libhdf5-openmpi-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up python3-ffcx (1:0.8.0-1) ... Setting up libtrilinos-teuchos-13.2:arm64 (13.2.0-6) ... Setting up libtrilinos-epetra-13.2:arm64 (13.2.0-6) ... Setting up libtrilinos-zoltan-dev:arm64 (13.2.0-6) ... Setting up libtrilinos-aztecoo-13.2:arm64 (13.2.0-6) ... Setting up libhdf5-openmpi-fortran-102t64:arm64 (1.10.10+repack-3.3) ... Setting up libhdf5-openmpi-cpp-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libtrilinos-aztecoo-dev:arm64 (13.2.0-6) ... Setting up libopenmpi-dev:arm64 (4.1.6-13.3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up libtrilinos-triutils-13.2:arm64 (13.2.0-6) ... Setting up libscalapack-openmpi2.2:arm64 (2.2.1-3.1) ... Setting up libadios2-mpi-core-2:arm64 (2.9.2+dfsg1-13+b1) ... Setting up libsuperlu-dist8:arm64 (8.2.1+dfsg1-1+b2) ... Setting up libfftw3-mpi-dev:arm64 (3.3.10-1+b2) ... Setting up libadios2-mpi-core-dev:arm64 (2.9.2+dfsg1-13+b1) ... Setting up libhdf5-openmpi-hl-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libsuperlu-dist-dev:arm64 (8.2.1+dfsg1-1+b2) ... Setting up libhdf5-openmpi-hl-fortran-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libadios2-mpi-c++11-2:arm64 (2.9.2+dfsg1-13+b1) ... Setting up libmumps-5.6t64:arm64 (5.6.2-2.1+b1) ... Setting up libtrilinos-epetraext-13.2:arm64 (13.2.0-6) ... Setting up libscalapack-openmpi-dev:arm64 (2.2.1-3.1) ... Setting up libtrilinos-galeri-13.2:arm64 (13.2.0-6) ... Setting up mpi-default-dev (1.15) ... Setting up libhdf5-openmpi-hl-cpp-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libtrilinos-amesos-13.2:arm64 (13.2.0-6) ... Setting up libscalapack-mpi-dev:arm64 (2.2.1-3.1) ... Setting up libhdf5-openmpi-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhypre-2.29.0:arm64 (2.29.0-2) ... Setting up libmumps-dev:arm64 (5.6.2-2.1+b1) ... Setting up libscotch-dev (7.0.4-2) ... Setting up libadios2-mpi-c++11-dev:arm64 (2.9.2+dfsg1-13+b1) ... Setting up libparpack2-dev:arm64 (3.9.1-1.1+b1) ... Setting up libhypre-dev:arm64 (2.29.0-2) ... Setting up libptscotch-dev (7.0.4-2) ... Setting up libboost-mpi1.83-dev (1.83.0-3) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libtrilinos-ifpack-13.2:arm64 (13.2.0-6) ... Setting up libhdf5-mpi-dev (1.10.10+repack-3.3) ... Setting up libtrilinos-ml-13.2:arm64 (13.2.0-6) ... Setting up libpetsc3.20-dev-common (3.20.6+dfsg1-1) ... Setting up libtrilinos-ml-dev:arm64 (13.2.0-6) ... Setting up libpetsc-real3.20:arm64 (3.20.6+dfsg1-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc.so.3.20 (libpetsc.so.3.20) in auto mode Setting up libslepc-real3.20 (3.20.2+dfsg1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc.so.3.20 (libslepc.so.3.20) in auto mode Setting up libdolfinx-real0.8:arm64 (1:0.8.0-9) ... Setting up libpetsc-real3.20-dev:arm64 (3.20.6+dfsg1-1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real to provide /usr/lib/petscdir/3.20 (petsc3.20) in auto mode Setting up libslepc-real3.20-dev (3.20.2+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real to provide /usr/lib/slepcdir/3.20 (slepc3.20) in auto mode Setting up libdolfinx-real-dev:arm64 (1:0.8.0-9) ... Setting up libdolfinx-dev:arm64 (1:0.8.0-9) ... Processing triggers for libc-bin (2.38-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3155023/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3155023/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.8.0-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.8.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 13.3.0 -- The CXX compiler identification is GNU 13.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3 (found version "3.11.9") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/aarch64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Found Boost 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/boost_program_options-1.83.0 -- [x] libboost_program_options.so.1.83.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -- Configuring done (25.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' [ 9%] Generating Poisson.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/Poisson.py [ 18%] Generating Elasticity.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/Elasticity.py cd /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.8.0/src /build/reproducible-path/fenicsx-performance-tests-0.8.0/src /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' [ 27%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/main.cpp [ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/elasticity_problem.cpp [ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/cgpoisson_problem.cpp /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/poisson_problem.cpp [ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem 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/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== 2024-07-03 20:35:15.015 ( 0.713s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2024-07-03 20:35:15.015 ( 0.713s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2024-07-03 20:35:15.015 ( 0.713s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-07-03 20:35:15.079 ( 0.777s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2024-07-03 20:35:15.125 ( 0.824s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:35:15.169 ( 0.867s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:35:15.169 ( 0.867s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-07-03 20:35:15.326 ( 1.024s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 66332, non-local: 962) 2024-07-03 20:35:15.326 ( 1.024s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2024-07-03 20:35:33.934 ( 19.632s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-07-03 20:35:33.977 ( 19.675s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-07-03 20:35:34.066 ( 19.764s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-07-03 20:35:34.131 ( 19.829s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(118) 16890-1272 2024-07-03 20:35:34.132 ( 19.830s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2024-07-03 20:35:34.132 ( 19.830s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2024-07-03 20:35:34.153 ( 19.852s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-07-03 20:35:34.197 ( 19.895s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-07-03 20:35:34.424 ( 20.122s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2024-07-03 20:35:34.424 ( 20.122s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2024-07-03 20:35:34.461 ( 20.159s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2024-07-03 20:35:34.598 ( 20.296s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-07-03 20:35:34.617 ( 20.315s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-07-03 20:35:34.952 ( 20.651s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:35:34.993 ( 20.691s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:35:35.057 ( 20.755s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:35:35.110 ( 20.808s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:35:35.233 ( 20.931s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-07-03 20:35:35.281 ( 20.979s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-07-03 20:35:35.281 ( 20.979s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-07-03 20:35:35.345 ( 21.044s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:35:35.393 ( 21.091s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:35:35.393 ( 21.091s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2024-07-03 20:35:35.590 ( 21.288s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-07-03 20:35:35.590 ( 21.288s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17328x4 2024-07-03 20:35:35.591 ( 21.289s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-07-03 20:35:35.591 ( 21.289s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-07-03 20:35:35.591 ( 21.289s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-07-03 20:35:35.813 ( 21.511s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:35:35.857 ( 21.555s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times 2024-07-03 20:35:36.010 ( 21.708s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2024-07-03 20:35:36.013 ( 21.711s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:35:36.077 ( 21.775s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:35:36.497 ( 22.195s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:35:36.541 ( 22.239s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:35:36.634 ( 22.332s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-07-03 20:35:36.634 ( 22.332s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-07-03 20:35:36.635 ( 22.333s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-07-03 20:35:36.635 ( 22.333s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17328x4 2024-07-03 20:35:36.637 ( 22.335s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-07-03 20:35:36.637 ( 22.335s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-07-03 20:35:36.637 ( 22.335s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-07-03 20:35:36.849 ( 22.547s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:35:36.897 ( 22.595s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:35:37.161 ( 22.859s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-07-03 20:35:37.161 ( 22.860s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-07-03 20:35:37.161 ( 22.860s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2024-07-03 20:35:37.601 ( 23.299s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 213 to 578 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-9 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2024-07-03 20:35:40.390 ( 26.088s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 MIS-k aggressive coarsening MIS-2 coarsening on aggressive levels Number smoothing steps 1 Complexity: grid = 1.0654 operator = 1.2481 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.04158 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=192, cols=192, bs=6 package used to perform factorization: petsc total: nonzeros=34272, allocated nonzeros=34272 using I-node routines: found 47 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=192, cols=192, bs=6 total: nonzeros=32904, allocated nonzeros=32904 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 61 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=192, cols=192, bs=6 total: nonzeros=32904, allocated nonzeros=32904 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 61 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.260062, max 2.86068 eigenvalues provided (min 1.40321e-06, max 2.60062) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1770, cols=1770, bs=6 total: nonzeros=277596, allocated nonzeros=277596 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 178 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.257643, max 2.83407 eigenvalues provided (min 0.0751595, max 2.57643) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3384 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3384 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 21.000000 21.000000 Build dofmap data | 2 0.360000 0.720000 Build sparsity | 1 0.070000 0.070000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.620000 0.620000 Compute graph partition (SCOTCH) | 1 18.560000 18.560000 Compute local part of mesh dual graph | 2 0.060000 0.120000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.250000 0.250000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.190000 0.190000 Distribute row-wise data (scalable) | 1 0.360000 0.360000 GPS: create_level_structure | 5 0.004000 0.020000 Gibbs-Poole-Stockmeyer ordering | 1 0.030000 0.030000 Init MPI | 1 0.410000 0.410000 Init PETSc | 1 0.260000 0.260000 Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 17.490000 17.490000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.040000 0.040000 SCOTCH: call SCOTCH_dgraphPart | 1 18.530000 18.530000 SparsityPattern::finalize | 1 0.130000 0.130000 Topology: create | 1 1.100000 1.100000 Topology: determine shared index ownership | 1 0.290000 0.290000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble matrix | 1 0.590000 0.590000 ZZZ Assemble vector | 1 0.040000 0.040000 ZZZ Create Mesh | 1 21.080000 21.080000 ZZZ Create RHS function | 1 0.180000 0.180000 ZZZ Create boundary conditions | 1 0.280000 0.280000 ZZZ Create facets and facet->cell connectivity | 1 0.620000 0.620000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 1.470000 1.470000 ZZZ FunctionSpace | 1 0.360000 0.360000 ZZZ Solve | 1 17.960000 17.960000 *** Number of Krylov iterations: 22 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Wed Jul 3 20:35:57 2024 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 4.298e+01 1.000 4.298e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.202e+08 1.102 2.089e+08 6.268e+08 Flops/sec: 5.124e+06 1.101 4.861e+06 1.458e+07 MPI Msg Count: 8.930e+02 1.041 8.700e+02 2.610e+03 MPI Msg Len (bytes): 6.385e+06 1.414 6.219e+03 1.623e+07 MPI Reductions: 5.400e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 4.2980e+01 100.0% 6.2683e+08 100.0% 2.610e+03 100.0% 6.219e+03 100.0% 5.220e+02 96.7% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 121 1.0 2.4392e+00 1.1 0.00e+00 0.0 2.2e+02 4.0e+00 1.2e+02 5 0 8 0 22 5 0 8 0 23 0 BuildTwoSidedF 86 1.0 1.5077e+00 1.0 0.00e+00 0.0 1.1e+02 3.3e+04 8.6e+01 3 0 4 23 16 3 0 4 23 16 0 MatMult 226 1.0 4.7653e+00 1.0 1.27e+08 1.1 1.4e+03 5.5e+03 0.0e+00 11 58 52 46 0 11 58 52 46 0 76 MatMultAdd 46 1.0 8.5669e-01 1.2 1.04e+07 1.1 1.8e+02 1.3e+03 0.0e+00 2 5 7 1 0 2 5 7 1 0 35 MatMultTranspose 46 1.0 9.5343e-01 1.3 1.05e+07 1.1 1.8e+02 1.3e+03 0.0e+00 2 5 7 1 0 2 5 7 1 0 31 MatSolve 23 0.0 1.9856e-03 0.0 1.57e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 792 MatLUFactorSym 1 1.0 9.8001e-04 97.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.5288e-03 980.0 3.94e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2576 MatConvert 1 1.0 2.1860e-04 1.1 0.00e+00 0.0 1.2e+01 7.1e+02 1.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatScale 4 1.0 3.9300e-04 1.1 4.54e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3317 MatResidual 46 1.0 1.0673e+00 1.2 2.47e+07 1.1 2.8e+02 5.2e+03 0.0e+00 2 11 11 9 0 2 11 11 9 0 66 MatAssemblyBegin 59 1.0 7.5160e-01 1.4 0.00e+00 0.0 1.1e+02 3.3e+04 3.0e+01 2 0 4 23 6 2 0 4 23 6 0 MatAssemblyEnd 59 1.0 2.3546e+00 1.1 8.07e+04 2.1 2.1e+02 3.8e+02 1.2e+02 5 0 8 0 22 5 0 8 0 23 0 MatGetRowIJ 1 0.0 3.2160e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 6.9601e-01 1.0 0.00e+00 0.0 1.4e+01 2.2e+04 3.0e+01 2 0 1 2 6 2 0 1 2 6 0 MatGetOrdering 1 0.0 8.5201e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.1215e+00 1.0 1.37e+05 1.0 2.8e+02 6.3e+02 1.0e+02 3 0 11 1 19 3 0 11 1 20 0 MatZeroEntries 3 1.0 1.1908e-04 4.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 9.4728e-02 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 3.1703e-01 1.0 1.14e+05 1.0 2.4e+01 4.0e+02 1.4e+01 1 0 1 0 3 1 0 1 0 3 1 MatTranspose 10 1.0 6.0377e-01 1.0 0.00e+00 0.0 1.3e+02 1.5e+03 3.6e+01 1 0 5 1 7 1 0 5 1 7 0 MatMatMultSym 9 1.0 7.9517e-01 1.1 0.00e+00 0.0 7.5e+01 8.0e+03 3.0e+01 2 0 3 4 6 2 0 3 4 6 0 MatMatMultNum 3 1.0 1.1608e-01 1.2 6.46e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 1 0 3 1 2 1 158 MatPtAPSymbolic 3 1.0 1.2308e+00 1.0 0.00e+00 0.0 9.9e+01 3.0e+04 2.1e+01 3 0 4 18 4 3 0 4 18 4 0 MatPtAPNumeric 3 1.0 9.9936e-01 1.1 5.23e+07 1.2 6.6e+01 3.3e+04 1.8e+01 2 22 3 13 3 2 22 3 13 3 139 MatGetLocalMat 9 1.0 1.5697e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 4.1314e-01 1.1 0.00e+00 0.0 1.1e+02 3.0e+04 0.0e+00 1 0 4 21 0 1 0 4 21 0 0 VecMDot 20 1.0 4.4877e-01 1.1 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 4 1 1 0 0 4 8 VecTDot 46 1.0 9.1064e-01 1.0 9.34e+05 1.0 0.0e+00 0.0e+00 4.6e+01 2 0 0 0 9 2 0 0 0 9 3 VecNorm 45 1.0 1.0221e+00 1.2 7.02e+05 1.0 0.0e+00 0.0e+00 4.5e+01 2 0 0 0 8 2 0 0 0 9 2 VecScale 22 1.0 1.5964e-04 1.1 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2189 VecCopy 142 1.0 4.1268e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 162 1.0 2.5244e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 46 1.0 6.3860e-04 1.0 9.15e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4234 VecAYPX 297 1.0 2.5730e-03 1.0 2.39e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2762 VecAXPBYCZ 92 1.0 1.0828e-03 1.3 2.46e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 6748 VecMAXPY 22 1.0 6.2528e-04 1.1 1.39e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 6605 VecAssemblyBegin 57 1.0 9.6630e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 2 0 0 0 10 2 0 0 0 11 0 VecAssemblyEnd 57 1.0 2.6572e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 206 1.0 1.9188e-03 1.1 1.10e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1705 VecScatterBegin 375 1.0 8.5431e-03 1.3 0.00e+00 0.0 1.9e+03 4.3e+03 0.0e+00 0 0 73 50 0 0 0 73 50 0 0 VecScatterEnd 375 1.0 7.2525e+00 1.1 1.27e+04 1.8 0.0e+00 0.0e+00 0.0e+00 16 0 0 0 0 16 0 0 0 0 0 VecNormalize 22 1.0 4.8890e-01 1.1 3.53e+05 1.0 0.0e+00 0.0e+00 2.2e+01 1 0 0 0 4 1 0 0 0 4 2 SFSetGraph 35 1.0 1.5744e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 35 1.0 1.2427e+00 1.3 0.00e+00 0.0 3.2e+02 3.7e+02 3.5e+01 3 0 12 1 6 3 0 12 1 7 0 SFBcastBegin 14 1.0 1.0292e-04 1.3 0.00e+00 0.0 8.4e+01 6.7e+02 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 14 1.0 8.7904e-02 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 1.9604e-04 2.5 0.00e+00 0.0 1.8e+01 5.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 6.3859e-02 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 393 1.0 1.1561e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 393 1.0 4.2592e-04 1.3 1.27e+04 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 69 KSPSetUp 7 1.0 1.3744e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 7.6609e+00 1.0 1.45e+08 1.1 1.6e+03 4.6e+03 9.2e+01 18 67 61 45 17 18 67 61 45 18 55 KSPGMRESOrthog 20 1.0 4.4937e-01 1.1 2.35e+06 1.0 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 4 1 1 0 0 4 16 PCSetUp_GAMG+ 1 1.0 9.6202e+00 1.0 7.31e+07 1.2 9.5e+02 8.1e+03 3.8e+02 22 32 36 48 70 22 32 36 48 73 21 PCGAMGCreateG 2 1.0 1.0683e+00 1.0 4.99e+04 1.0 1.3e+02 1.5e+03 5.0e+01 2 0 5 1 9 2 0 5 1 10 0 GAMG Coarsen 2 1.0 1.1220e+00 1.0 1.37e+05 1.0 2.8e+02 6.3e+02 1.0e+02 3 0 11 1 19 3 0 11 1 20 0 GAMG MIS/Agg 2 1.0 1.1215e+00 1.0 1.37e+05 1.0 2.8e+02 6.3e+02 1.0e+02 3 0 11 1 19 3 0 11 1 20 0 PCGAMGProl 2 1.0 1.9621e+00 1.0 0.00e+00 0.0 1.9e+02 1.8e+03 7.6e+01 5 0 7 2 14 5 0 7 2 15 0 GAMG Prol-col 2 1.0 1.6258e+00 1.0 0.00e+00 0.0 1.7e+02 7.0e+02 5.6e+01 4 0 6 1 10 4 0 6 1 11 0 GAMG Prol-lift 2 1.0 2.6005e-01 1.0 0.00e+00 0.0 2.4e+01 9.4e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 PCGAMGOptProl 2 1.0 2.2039e+00 1.0 2.07e+07 1.1 1.9e+02 8.3e+03 6.6e+01 5 9 7 10 12 5 9 7 10 13 27 GAMG smooth 2 1.0 8.6441e-01 1.0 6.97e+06 1.1 7.2e+01 1.3e+04 2.4e+01 2 3 3 6 4 2 3 3 6 5 23 PCGAMGCreateL 2 1.0 3.2275e+00 1.0 5.22e+07 1.2 1.5e+02 3.6e+04 8.1e+01 7 22 6 33 15 7 22 6 33 16 43 GAMG PtAP 2 1.0 1.9314e+00 1.0 5.22e+07 1.2 1.2e+02 4.2e+04 2.6e+01 4 22 5 31 5 4 22 5 31 5 72 GAMG Reduce 1 1.0 1.2960e+00 1.0 0.00e+00 0.0 2.9e+01 1.1e+04 5.5e+01 3 0 1 2 10 3 0 1 2 11 0 PCGAMG Gal l00 1 1.0 1.1800e+00 1.0 3.53e+07 1.1 6.0e+01 5.9e+04 1.3e+01 3 16 2 22 2 3 16 2 22 2 86 PCGAMG Opt l00 1 1.0 4.5967e-01 1.0 5.04e+06 1.0 3.6e+01 2.2e+04 1.1e+01 1 2 1 5 2 1 2 1 5 2 33 PCGAMG Gal l01 1 1.0 7.5200e-01 1.0 1.69e+07 1.8 6.0e+01 2.5e+04 1.3e+01 2 6 2 9 2 2 6 2 9 2 49 PCGAMG Opt l01 1 1.0 3.6787e-01 1.0 1.41e+06 1.5 3.6e+01 4.9e+03 1.1e+01 1 1 1 1 2 1 1 1 1 2 9 PCSetUp 2 1.0 9.6203e+00 1.0 7.31e+07 1.2 9.5e+02 8.1e+03 3.8e+02 22 32 36 48 70 22 32 36 48 73 21 PCSetUpOnBlocks 23 1.0 2.7590e-03 15.8 3.94e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1428 PCApply 23 1.0 5.9579e+00 1.0 1.24e+08 1.1 1.5e+03 4.2e+03 2.3e+01 14 57 56 38 4 14 57 56 38 4 60 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 108 108 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 3.6e-08 Average time for MPI_Barrier(): 0.0213171 Average time for zero size MPI_Send(): 0.00791935 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=aarch64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real --PETSC_ARCH=aarch64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-05-16 19:51:32 on reproducible Machine characteristics: Linux-6.1.0-21-arm64-aarch64-with-glibc2.38 Using PETSc directory: /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -L/usr/lib/aarch64-linux-gnu/openmpi/lib -L/usr/lib/aarch64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/aarch64-linux-gnu -L/lib/aarch64-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line 2024-07-03 20:36:04.470 ( 50.169s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== elasticity strong scaling (3 processes with ndofs=30000) ==== 2024-07-03 20:36:05.743 ( 0.612s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2024-07-03 20:36:05.743 ( 0.612s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2024-07-03 20:36:05.743 ( 0.612s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-07-03 20:36:05.803 ( 0.672s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2024-07-03 20:36:05.829 ( 0.698s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:36:05.869 ( 0.738s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:36:05.869 ( 0.738s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-07-03 20:36:06.034 ( 0.903s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 66332, non-local: 962) 2024-07-03 20:36:06.034 ( 0.903s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2024-07-03 20:36:23.670 ( 18.539s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-07-03 20:36:23.729 ( 18.598s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-07-03 20:36:23.806 ( 18.675s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-07-03 20:36:23.841 ( 18.710s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(121) 447-15931 2024-07-03 20:36:23.855 ( 18.724s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2024-07-03 20:36:23.855 ( 18.724s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2024-07-03 20:36:23.869 ( 18.738s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-07-03 20:36:23.903 ( 18.772s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-07-03 20:36:24.098 ( 18.967s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2024-07-03 20:36:24.098 ( 18.967s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2024-07-03 20:36:24.118 ( 18.987s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2024-07-03 20:36:24.271 ( 19.140s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-07-03 20:36:24.287 ( 19.156s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-07-03 20:36:24.568 ( 19.437s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:36:24.597 ( 19.466s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:36:24.645 ( 19.514s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:36:24.677 ( 19.546s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:36:24.757 ( 19.626s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-07-03 20:36:24.777 ( 19.646s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-07-03 20:36:24.777 ( 19.647s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-07-03 20:36:24.838 ( 19.707s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:36:24.889 ( 19.758s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:36:24.889 ( 19.759s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2024-07-03 20:36:25.030 ( 19.899s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-07-03 20:36:25.030 ( 19.899s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17155x4 2024-07-03 20:36:25.031 ( 19.900s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-07-03 20:36:25.031 ( 19.900s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-07-03 20:36:25.031 ( 19.900s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-07-03 20:36:25.209 ( 20.078s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:36:25.233 ( 20.102s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times 2024-07-03 20:36:25.378 ( 20.247s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2024-07-03 20:36:25.397 ( 20.267s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:36:25.441 ( 20.310s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:36:25.757 ( 20.626s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:36:25.797 ( 20.666s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:36:25.882 ( 20.751s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-07-03 20:36:25.882 ( 20.751s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-07-03 20:36:25.883 ( 20.752s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-07-03 20:36:25.883 ( 20.752s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17155x4 2024-07-03 20:36:25.884 ( 20.753s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-07-03 20:36:25.884 ( 20.753s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-07-03 20:36:25.885 ( 20.754s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-07-03 20:36:26.073 ( 20.942s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:36:26.113 ( 20.982s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:36:26.345 ( 21.214s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-07-03 20:36:26.346 ( 21.215s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-07-03 20:36:26.346 ( 21.215s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2024-07-03 20:36:26.597 ( 21.466s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 226 to 544 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-9 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2024-07-03 20:36:28.186 ( 23.055s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 MIS-k aggressive coarsening MIS-2 coarsening on aggressive levels Number smoothing steps 1 Complexity: grid = 1.0686 operator = 1.2703 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.02775 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=186, cols=186, bs=6 package used to perform factorization: petsc total: nonzeros=32004, allocated nonzeros=32004 using I-node routines: found 53 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=186, cols=186, bs=6 total: nonzeros=31140, allocated nonzeros=31140 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 59 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=186, cols=186, bs=6 total: nonzeros=31140, allocated nonzeros=31140 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 59 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.244045, max 2.68449 eigenvalues provided (min 1.37621e-06, max 2.44045) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1872, cols=1872, bs=6 total: nonzeros=307152, allocated nonzeros=307152 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 188 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.259012, max 2.84914 eigenvalues provided (min 0.0704738, max 2.59012) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3343 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3343 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 19.650000 19.650000 Build dofmap data | 2 0.295000 0.590000 Build sparsity | 1 0.080000 0.080000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.500000 0.500000 Compute graph partition (SCOTCH) | 1 17.590000 17.590000 Compute local part of mesh dual graph | 2 0.050000 0.100000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.230000 0.230000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.210000 0.210000 Distribute row-wise data (scalable) | 1 0.280000 0.280000 GPS: create_level_structure | 2 0.006667 0.020000 Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 Init MPI | 1 0.370000 0.370000 Init PETSc | 1 0.240000 0.240000 Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 10.990000 10.990000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.060000 0.060000 SCOTCH: call SCOTCH_dgraphPart | 1 17.540000 17.540000 SparsityPattern::finalize | 1 0.120000 0.120000 Topology: create | 1 0.900000 0.900000 Topology: determine shared index ownership | 1 0.240000 0.240000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble matrix | 1 0.550000 0.550000 ZZZ Assemble vector | 1 0.040000 0.040000 ZZZ Create Mesh | 1 19.710000 19.710000 ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.250000 0.250000 ZZZ Create facets and facet->cell connectivity | 1 0.500000 0.500000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.560000 0.560000 ZZZ FunctionSpace | 1 0.300000 0.300000 ZZZ Solve | 1 11.230000 11.230000 *** Number of Krylov iterations: 21 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Wed Jul 3 20:36:39 2024 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 3.355e+01 1.000 3.354e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.228e+08 1.119 2.073e+08 6.219e+08 Flops/sec: 6.641e+06 1.119 6.180e+06 1.854e+07 MPI Msg Count: 8.690e+02 1.041 8.467e+02 2.540e+03 MPI Msg Len (bytes): 6.408e+06 1.467 6.265e+03 1.591e+07 MPI Reductions: 5.360e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 3.3543e+01 100.0% 6.2192e+08 100.0% 2.540e+03 100.0% 6.265e+03 100.0% 5.180e+02 96.6% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 121 1.0 1.1988e+00 1.2 0.00e+00 0.0 2.2e+02 4.0e+00 1.2e+02 3 0 9 0 23 3 0 9 0 23 0 BuildTwoSidedF 86 1.0 6.0299e-01 1.6 0.00e+00 0.0 1.1e+02 3.4e+04 8.6e+01 1 0 4 24 16 1 0 4 24 17 0 MatMult 217 1.0 2.8916e+00 1.0 1.26e+08 1.1 1.3e+03 5.4e+03 0.0e+00 8 57 51 44 0 8 57 51 44 0 123 MatMultAdd 44 1.0 5.7816e-01 1.3 1.02e+07 1.1 1.8e+02 1.2e+03 0.0e+00 2 5 7 1 0 2 5 7 1 0 51 MatMultTranspose 44 1.0 6.0935e-01 1.5 1.02e+07 1.1 1.8e+02 1.2e+03 0.0e+00 2 5 7 1 0 2 5 7 1 0 48 MatSolve 22 0.0 9.8234e-03 0.0 1.40e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 143 MatLUFactorSym 1 1.0 9.2277e-04 82.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.3753e-03 1074.4 3.56e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2586 MatConvert 1 1.0 5.5722e-02 1.6 0.00e+00 0.0 1.2e+01 6.9e+02 1.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatScale 4 1.0 3.8616e-04 1.1 4.64e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3441 MatResidual 44 1.0 6.0658e-01 1.1 2.47e+07 1.1 2.6e+02 5.1e+03 0.0e+00 2 11 10 8 0 2 11 10 8 0 113 MatAssemblyBegin 59 1.0 6.4019e-01 1.5 0.00e+00 0.0 1.1e+02 3.4e+04 3.0e+01 2 0 4 24 6 2 0 4 24 6 0 MatAssemblyEnd 59 1.0 1.7824e+00 1.1 8.51e+04 2.1 2.1e+02 3.7e+02 1.2e+02 5 0 8 0 22 5 0 8 0 23 0 MatGetRowIJ 1 0.0 3.0840e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 7.1200e-01 1.0 0.00e+00 0.0 1.4e+01 2.0e+04 3.0e+01 2 0 1 2 6 2 0 1 2 6 0 MatGetOrdering 1 0.0 8.2881e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 7.3346e-01 1.0 1.37e+05 1.0 2.8e+02 6.3e+02 1.0e+02 2 0 11 1 19 2 0 11 1 20 1 MatZeroEntries 3 1.0 1.1444e-04 4.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 8.3946e-02 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 2.1359e-01 1.1 1.15e+05 1.0 2.4e+01 3.9e+02 1.4e+01 1 0 1 0 3 1 0 1 0 3 2 MatTranspose 10 1.0 3.6293e-01 1.1 0.00e+00 0.0 1.3e+02 1.6e+03 3.6e+01 1 0 5 1 7 1 0 5 1 7 0 MatMatMultSym 9 1.0 8.0453e-01 1.0 0.00e+00 0.0 7.5e+01 7.9e+03 3.0e+01 2 0 3 4 6 2 0 3 4 6 0 MatMatMultNum 3 1.0 1.2014e-01 1.1 6.73e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 1 0 3 1 2 1 156 MatPtAPSymbolic 3 1.0 9.1499e-01 1.0 0.00e+00 0.0 9.9e+01 3.1e+04 2.1e+01 3 0 4 19 4 3 0 4 19 4 0 MatPtAPNumeric 3 1.0 9.4396e-01 1.0 5.60e+07 1.3 6.6e+01 3.5e+04 1.8e+01 3 23 3 15 3 3 23 3 15 3 154 MatGetLocalMat 9 1.0 1.8909e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 3.6780e-01 1.2 0.00e+00 0.0 1.1e+02 3.0e+04 0.0e+00 1 0 4 21 0 1 0 4 21 0 0 VecMDot 20 1.0 2.1501e-01 1.3 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 4 1 1 0 0 4 16 VecTDot 44 1.0 6.1917e-01 1.2 8.83e+05 1.0 0.0e+00 0.0e+00 4.4e+01 2 0 0 0 8 2 0 0 0 8 4 VecNorm 44 1.0 5.3215e-01 1.2 6.74e+05 1.0 0.0e+00 0.0e+00 4.4e+01 1 0 0 0 8 1 0 0 0 8 4 VecScale 22 1.0 1.3104e-04 1.1 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2675 VecCopy 136 1.0 3.5372e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 155 1.0 2.3196e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 44 1.0 5.6416e-04 1.1 8.64e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4580 VecAYPX 284 1.0 2.2208e-02 9.5 2.28e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 307 VecAXPBYCZ 88 1.0 1.0090e-03 1.3 2.36e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 6949 VecMAXPY 22 1.0 5.0864e-04 1.1 1.39e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 8146 VecAssemblyBegin 57 1.0 2.0231e-02 40.1 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 10 0 0 0 0 11 0 VecAssemblyEnd 57 1.0 3.5680e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 198 1.0 1.5830e-03 1.1 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1993 VecScatterBegin 362 1.0 6.5351e-03 1.4 0.00e+00 0.0 1.8e+03 4.2e+03 0.0e+00 0 0 72 48 0 0 0 72 48 0 0 VecScatterEnd 362 1.0 3.9751e+00 1.1 1.25e+04 2.6 0.0e+00 0.0e+00 0.0e+00 11 0 0 0 0 11 0 0 0 0 0 VecNormalize 22 1.0 2.1428e-01 1.2 3.54e+05 1.0 0.0e+00 0.0e+00 2.2e+01 1 0 0 0 4 1 0 0 0 4 5 SFSetGraph 35 1.0 1.5208e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 35 1.0 9.6717e-01 1.2 0.00e+00 0.0 3.2e+02 3.6e+02 3.5e+01 3 0 13 1 7 3 0 13 1 7 0 SFBcastBegin 14 1.0 1.1288e-04 1.1 0.00e+00 0.0 8.4e+01 6.5e+02 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 14 1.0 9.9837e-02 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 9.3841e-05 1.3 0.00e+00 0.0 1.8e+01 5.3e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 5.1909e-02 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 380 1.0 9.5276e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 380 1.0 2.6104e-04 1.0 1.25e+04 2.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 104 KSPSetUp 7 1.0 9.7360e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 4.7951e+00 1.0 1.43e+08 1.1 1.5e+03 4.5e+03 8.8e+01 14 66 60 43 16 14 66 60 43 17 86 KSPGMRESOrthog 20 1.0 2.1548e-01 1.3 2.36e+06 1.0 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 4 1 1 0 0 4 33 PCSetUp_GAMG+ 1 1.0 6.0601e+00 1.0 7.75e+07 1.2 9.5e+02 8.3e+03 3.8e+02 18 33 37 50 71 18 33 37 50 73 34 PCGAMGCreateG 2 1.0 8.6454e-01 1.0 5.06e+04 1.0 1.3e+02 1.5e+03 5.0e+01 3 0 5 1 9 3 0 5 1 10 0 GAMG Coarsen 2 1.0 7.3386e-01 1.0 1.37e+05 1.0 2.8e+02 6.3e+02 1.0e+02 2 0 11 1 19 2 0 11 1 20 1 GAMG MIS/Agg 2 1.0 7.3349e-01 1.0 1.37e+05 1.0 2.8e+02 6.3e+02 1.0e+02 2 0 11 1 19 2 0 11 1 20 1 PCGAMGProl 2 1.0 1.8718e-01 1.1 0.00e+00 0.0 1.9e+02 1.9e+03 7.6e+01 1 0 8 2 14 1 0 8 2 15 0 GAMG Prol-col 2 1.0 4.2665e-02 1.2 0.00e+00 0.0 1.7e+02 7.6e+02 5.6e+01 0 0 7 1 10 0 0 7 1 11 0 GAMG Prol-lift 2 1.0 1.4837e-01 1.2 0.00e+00 0.0 2.4e+01 1.0e+04 1.2e+01 0 0 1 2 2 0 0 1 2 2 0 PCGAMGOptProl 2 1.0 1.3581e+00 1.0 2.14e+07 1.1 1.9e+02 8.2e+03 6.6e+01 4 10 8 10 12 4 10 8 10 13 44 GAMG smooth 2 1.0 7.8005e-01 1.0 7.25e+06 1.1 7.2e+01 1.3e+04 2.4e+01 2 3 3 6 4 2 3 3 6 5 26 PCGAMGCreateL 2 1.0 2.9082e+00 1.0 5.59e+07 1.3 1.5e+02 3.7e+04 8.1e+01 9 23 6 35 15 9 23 6 35 16 50 GAMG PtAP 2 1.0 1.6881e+00 1.0 5.59e+07 1.3 1.2e+02 4.4e+04 2.6e+01 5 23 5 33 5 5 23 5 33 5 86 GAMG Reduce 1 1.0 1.2200e+00 1.0 0.00e+00 0.0 2.9e+01 1.0e+04 5.5e+01 4 0 1 2 10 4 0 1 2 11 0 PCGAMG Gal l00 1 1.0 9.6818e-01 1.0 3.72e+07 1.1 6.0e+01 6.2e+04 1.3e+01 3 17 2 24 2 3 17 2 24 3 109 PCGAMG Opt l00 1 1.0 3.5972e-01 1.0 5.05e+06 1.0 3.6e+01 2.1e+04 1.1e+01 1 2 1 5 2 1 2 1 5 2 42 PCGAMG Gal l01 1 1.0 7.1992e-01 1.0 1.87e+07 2.1 6.0e+01 2.5e+04 1.3e+01 2 6 2 10 2 2 6 2 10 3 55 PCGAMG Opt l01 1 1.0 3.8021e-01 1.1 1.68e+06 1.7 3.6e+01 5.1e+03 1.1e+01 1 1 1 1 2 1 1 1 1 2 10 PCSetUp 2 1.0 6.0603e+00 1.0 7.75e+07 1.2 9.5e+02 8.3e+03 3.8e+02 18 34 37 50 71 18 34 37 50 73 35 PCSetUpOnBlocks 22 1.0 2.5525e-03 13.2 3.56e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1393 PCApply 22 1.0 3.6893e+00 1.0 1.23e+08 1.1 1.4e+03 4.1e+03 2.2e+01 11 56 55 37 4 11 56 55 37 4 95 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 108 108 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 3.6e-08 Average time for MPI_Barrier(): 0.0128042 Average time for zero size MPI_Send(): 0.00799195 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=aarch64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real --PETSC_ARCH=aarch64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-05-16 19:51:32 on reproducible Machine characteristics: Linux-6.1.0-21-arm64-aarch64-with-glibc2.38 Using PETSc directory: /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -L/usr/lib/aarch64-linux-gnu/openmpi/lib -L/usr/lib/aarch64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/aarch64-linux-gnu -L/lib/aarch64-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line 2024-07-03 20:36:41.126 ( 35.995s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson weak scaling (3 processes with ndofs=10000) ==== 2024-07-03 20:36:42.284 ( 0.602s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2024-07-03 20:36:42.284 ( 0.602s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2024-07-03 20:36:42.284 ( 0.602s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-07-03 20:36:42.458 ( 0.776s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2024-07-03 20:36:42.494 ( 0.812s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:36:42.529 ( 0.848s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:36:42.529 ( 0.848s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-07-03 20:36:42.674 ( 0.992s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 210000, non-local: 1800) 2024-07-03 20:36:42.674 ( 0.992s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2024-07-03 20:37:05.620 ( 23.938s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-07-03 20:37:05.673 ( 23.992s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-07-03 20:37:05.791 ( 24.109s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-07-03 20:37:05.961 ( 24.279s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(169) 50547-237 2024-07-03 20:37:05.984 ( 24.302s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2024-07-03 20:37:05.984 ( 24.302s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2024-07-03 20:37:06.189 ( 24.508s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-07-03 20:37:06.225 ( 24.544s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-07-03 20:37:06.431 ( 24.749s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2024-07-03 20:37:06.431 ( 24.749s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2024-07-03 20:37:06.489 ( 24.808s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2024-07-03 20:37:06.648 ( 24.966s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-07-03 20:37:06.681 ( 25.000s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-07-03 20:37:07.040 ( 25.358s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:07.137 ( 25.456s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:07.201 ( 25.520s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:07.269 ( 25.588s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:07.385 ( 25.704s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-07-03 20:37:07.401 ( 25.720s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-07-03 20:37:07.401 ( 25.720s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-07-03 20:37:07.438 ( 25.756s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:07.489 ( 25.808s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:07.489 ( 25.808s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2024-07-03 20:37:07.686 ( 26.004s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-07-03 20:37:07.686 ( 26.004s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53317x4 2024-07-03 20:37:07.703 ( 26.021s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-07-03 20:37:07.703 ( 26.021s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-07-03 20:37:07.703 ( 26.021s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-07-03 20:37:07.917 ( 26.236s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:07.949 ( 26.268s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times 2024-07-03 20:37:08.098 ( 26.416s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2024-07-03 20:37:08.136 ( 26.454s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:08.225 ( 26.544s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:08.825 ( 27.144s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:08.881 ( 27.200s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:09.023 ( 27.341s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-07-03 20:37:09.023 ( 27.341s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-07-03 20:37:09.024 ( 27.342s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-07-03 20:37:09.024 ( 27.342s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53317x4 2024-07-03 20:37:09.057 ( 27.375s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-07-03 20:37:09.057 ( 27.375s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-07-03 20:37:09.094 ( 27.412s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-07-03 20:37:09.373 ( 27.692s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:09.441 ( 27.760s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:09.829 ( 28.148s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-07-03 20:37:09.830 ( 28.148s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-07-03 20:37:09.830 ( 28.148s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2024-07-03 20:37:10.569 ( 28.887s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-07-03 20:37:10.569 ( 28.887s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (2,0) 2024-07-03 20:37:10.912 ( 29.231s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 442 to 1245 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-9 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2024-07-03 20:37:12.469 ( 30.788s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 25.840000 25.840000 Build dofmap data | 2 0.435000 0.870000 Build sparsity | 1 0.210000 0.210000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.020000 0.040000 Compute entities of dim = 2 | 1 0.920000 0.920000 Compute graph partition (SCOTCH) | 1 22.900000 22.900000 Compute local part of mesh dual graph | 2 0.230000 0.460000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.220000 0.220000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.230000 0.230000 Distribute row-wise data (scalable) | 1 0.310000 0.310000 GPS: create_level_structure | 6 0.010000 0.030000 Gibbs-Poole-Stockmeyer ordering | 1 0.070000 0.070000 Init MPI | 1 0.380000 0.380000 Init PETSc | 1 0.180000 0.180000 Init dofmap from element dofmap | 2 0.045000 0.090000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 8.220000 8.220000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.060000 0.060000 SCOTCH: call SCOTCH_dgraphPart | 1 22.860000 22.860000 SparsityPattern::finalize | 1 0.240000 0.240000 Topology: create | 1 1.390000 1.390000 Topology: determine shared index ownership | 1 0.430000 0.430000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.020000 0.020000 ZZZ Assemble | 1 2.270000 2.270000 ZZZ Assemble matrix | 1 0.590000 0.590000 ZZZ Assemble vector | 1 0.060000 0.060000 ZZZ Create Mesh | 1 25.900000 25.900000 ZZZ Create RHS function | 1 0.610000 0.610000 ZZZ Create boundary conditions | 1 0.420000 0.420000 ZZZ Create facets and facet->cell connectivity | 1 0.920000 0.920000 ZZZ FunctionSpace | 1 0.530000 0.530000 ZZZ Solve | 1 8.700000 8.700000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Wed Jul 3 20:37:20 2024 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 3.845e+01 1.000 3.845e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.527e+06 1.019 3.489e+06 1.047e+07 Flops/sec: 9.172e+04 1.018 9.074e+04 2.722e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.846e+05 1.183 5.806e+03 5.226e+05 MPI Reductions: 7.000e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 3.8451e+01 100.0% 1.0467e+07 100.0% 9.000e+01 100.0% 5.806e+03 100.0% 5.200e+01 74.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 3.0977e-01 1.4 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 1 0 27 0 7 1 0 27 0 10 0 BuildTwoSidedF 2 1.0 1.9138e-01 3.2 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.3764e-01 1.1 1.93e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 42 MatConvert 1 1.0 4.6054e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 MatAssemblyBegin 5 1.0 2.1304e-01 2.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 5.0380e-01 1.1 3.72e+03 1.2 1.2e+01 1.4e+03 5.0e+00 1 0 13 3 7 1 0 13 3 10 0 MatGetRowIJ 4 1.0 3.6400e-06 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 2.0252e-02 2.9 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 2.8449e-02 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 7.8780e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 2.5265e-01 1.2 3.21e+05 1.0 0.0e+00 0.0e+00 1.6e+01 1 9 0 0 23 1 9 0 0 31 4 VecNorm 8 1.0 1.6088e-01 3.4 1.60e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 3 VecCopy 2 1.0 1.8760e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 2.6360e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 2.0328e-04 1.1 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 4103 VecAYPX 6 1.0 9.8480e-05 1.0 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 3630 VecScatterBegin 7 1.0 3.3788e-04 1.6 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 1.3598e-01 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 4.2921e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 2.3974e-01 1.3 0.00e+00 0.0 3.6e+01 8.1e+02 3.0e+00 1 0 40 6 4 1 0 40 6 6 0 SFPack 7 1.0 4.9680e-05 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 4.1600e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 6.2480e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 5.2564e+00 1.0 2.81e+06 1.0 4.2e+01 5.6e+03 2.4e+01 14 80 47 45 34 14 80 47 45 46 2 PCSetUp 1 1.0 2.9434e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 8 0 0 0 3 8 0 0 0 4 0 PCApply 8 1.0 4.8621e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 12 0 0 0 0 12 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 3.6e-08 Average time for MPI_Barrier(): 5.104e-06 Average time for zero size MPI_Send(): 0.00666593 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=aarch64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real --PETSC_ARCH=aarch64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-05-16 19:51:32 on reproducible Machine characteristics: Linux-6.1.0-21-arm64-aarch64-with-glibc2.38 Using PETSc directory: /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -L/usr/lib/aarch64-linux-gnu/openmpi/lib -L/usr/lib/aarch64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/aarch64-linux-gnu -L/lib/aarch64-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line 2024-07-03 20:37:24.974 ( 43.293s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson strong scaling (3 processes with ndofs=30000) ==== 2024-07-03 20:37:26.191 ( 0.610s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2024-07-03 20:37:26.192 ( 0.610s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2024-07-03 20:37:26.192 ( 0.610s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-07-03 20:37:26.397 ( 0.815s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2024-07-03 20:37:26.438 ( 0.856s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:26.438 ( 0.856s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:26.438 ( 0.856s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-07-03 20:37:26.610 ( 1.028s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 210000, non-local: 1800) 2024-07-03 20:37:26.610 ( 1.028s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2024-07-03 20:37:51.868 ( 26.286s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-07-03 20:37:51.897 ( 26.316s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-07-03 20:37:51.968 ( 26.386s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-07-03 20:37:52.159 ( 26.578s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(169) 50547-237 2024-07-03 20:37:52.194 ( 26.612s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2024-07-03 20:37:52.194 ( 26.612s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2024-07-03 20:37:52.209 ( 26.628s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-07-03 20:37:52.245 ( 26.664s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-07-03 20:37:52.433 ( 26.851s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2024-07-03 20:37:52.433 ( 26.851s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2024-07-03 20:37:52.457 ( 26.876s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2024-07-03 20:37:52.564 ( 26.982s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-07-03 20:37:52.577 ( 26.996s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-07-03 20:37:52.872 ( 27.290s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:52.901 ( 27.320s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:52.953 ( 27.372s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:52.989 ( 27.408s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:53.089 ( 27.508s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-07-03 20:37:53.105 ( 27.524s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-07-03 20:37:53.105 ( 27.524s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-07-03 20:37:53.162 ( 27.580s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:53.197 ( 27.616s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:53.197 ( 27.616s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2024-07-03 20:37:53.358 ( 27.776s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-07-03 20:37:53.358 ( 27.776s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53317x4 2024-07-03 20:37:53.383 ( 27.801s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-07-03 20:37:53.383 ( 27.801s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-07-03 20:37:53.383 ( 27.801s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-07-03 20:37:53.589 ( 28.008s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:53.633 ( 28.052s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times 2024-07-03 20:37:53.781 ( 28.200s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2024-07-03 20:37:53.828 ( 28.246s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:53.869 ( 28.288s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:54.292 ( 28.711s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:54.329 ( 28.748s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:54.387 ( 28.806s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-07-03 20:37:54.387 ( 28.806s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-07-03 20:37:54.388 ( 28.807s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-07-03 20:37:54.388 ( 28.807s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53317x4 2024-07-03 20:37:54.405 ( 28.823s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-07-03 20:37:54.421 ( 28.840s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-07-03 20:37:54.422 ( 28.840s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-07-03 20:37:54.589 ( 29.008s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-07-03 20:37:54.625 ( 29.044s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-07-03 20:37:54.825 ( 29.244s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-07-03 20:37:54.826 ( 29.244s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-07-03 20:37:54.826 ( 29.244s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2024-07-03 20:37:54.894 ( 29.313s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-07-03 20:37:54.894 ( 29.313s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (2,0) 2024-07-03 20:37:55.140 ( 29.559s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 449 to 1242 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-9 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2024-07-03 20:37:56.102 ( 30.520s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 27.590000 27.590000 Build dofmap data | 2 0.330000 0.660000 Build sparsity | 1 0.120000 0.120000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.010000 0.020000 Compute entities of dim = 2 | 1 0.610000 0.610000 Compute graph partition (SCOTCH) | 1 25.220000 25.220000 Compute local part of mesh dual graph | 2 0.180000 0.360000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.240000 0.240000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.170000 0.170000 Distribute row-wise data (scalable) | 1 0.280000 0.280000 GPS: create_level_structure | 6 0.010000 0.030000 Gibbs-Poole-Stockmeyer ordering | 1 0.050000 0.050000 Init MPI | 1 0.350000 0.350000 Init PETSc | 1 0.220000 0.220000 Init dofmap from element dofmap | 2 0.025000 0.050000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 14.310000 14.310000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.040000 0.040000 SCOTCH: call SCOTCH_dgraphPart | 1 25.200000 25.200000 SparsityPattern::finalize | 1 0.160000 0.160000 Topology: create | 1 0.920000 0.920000 Topology: determine shared index ownership | 1 0.230000 0.230000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.020000 0.020000 ZZZ Assemble | 1 1.180000 1.180000 ZZZ Assemble matrix | 1 0.360000 0.360000 ZZZ Assemble vector | 1 0.060000 0.060000 ZZZ Create Mesh | 1 27.670000 27.670000 ZZZ Create RHS function | 1 0.080000 0.080000 ZZZ Create boundary conditions | 1 0.170000 0.170000 ZZZ Create facets and facet->cell connectivity | 1 0.610000 0.610000 ZZZ FunctionSpace | 1 0.300000 0.300000 ZZZ Solve | 1 14.410000 14.410000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Wed Jul 3 20:38:10 2024 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 4.433e+01 1.001 4.432e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.535e+06 1.021 3.489e+06 1.047e+07 Flops/sec: 7.976e+04 1.021 7.873e+04 2.362e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.852e+05 1.190 5.826e+03 5.243e+05 MPI Reductions: 7.000e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 4.4319e+01 100.0% 1.0467e+07 100.0% 9.000e+01 100.0% 5.826e+03 100.0% 5.200e+01 74.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 9.0348e-02 1.6 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 10 0 BuildTwoSidedF 2 1.0 5.4800e-02 3.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.4425e-01 1.2 1.94e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 40 MatConvert 1 1.0 2.3248e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 MatAssemblyBegin 5 1.0 6.8229e-02 3.7 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 3.5533e-01 1.2 3.78e+03 1.2 1.2e+01 1.4e+03 5.0e+00 1 0 13 3 7 1 0 13 3 10 0 MatGetRowIJ 4 1.0 3.7610e-06 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 3.1553e-02 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 2.8485e-02 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 7.7632e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 3.2358e-01 1.1 3.21e+05 1.0 0.0e+00 0.0e+00 1.6e+01 1 9 0 0 23 1 9 0 0 31 3 VecNorm 8 1.0 2.0039e-01 1.7 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 2 VecCopy 2 1.0 2.4040e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 2.5681e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 2.2160e-04 1.1 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 3764 VecAYPX 6 1.0 1.0336e-04 1.1 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 3459 VecScatterBegin 7 1.0 3.3120e-04 1.7 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 1.4260e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 3.9240e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 5.9927e-02 1.4 0.00e+00 0.0 3.6e+01 8.1e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 3.3201e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 4.7200e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 2.7960e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 9.9775e+00 1.0 2.82e+06 1.0 4.2e+01 5.6e+03 2.4e+01 22 80 47 45 34 22 80 47 45 46 1 PCSetUp 1 1.0 4.3061e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 10 0 0 0 3 10 0 0 0 4 0 PCApply 8 1.0 9.4043e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 21 0 0 0 0 21 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 3.6e-08 Average time for MPI_Barrier(): 1.552e-06 Average time for zero size MPI_Send(): 2.29333e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=aarch64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real --PETSC_ARCH=aarch64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-05-16 19:51:32 on reproducible Machine characteristics: Linux-6.1.0-21-arm64-aarch64-with-glibc2.38 Using PETSc directory: /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -L/usr/lib/aarch64-linux-gnu/openmpi/lib -L/usr/lib/aarch64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/aarch64-linux-gnu -L/lib/aarch64-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: strong source: command line 2024-07-03 20:38:10.687 ( 45.105s) [RANK: 0 ] loguru.cpp:526 INFO| atexit make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.8.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/fenicsx-performance-tests-0.8.0/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.8.0-1_arm64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.8.0-1_all.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.8.0-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.8.0-1_arm64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.8.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3155023/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3155023/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3155023 and its subdirectories I: Current time: Wed Jul 3 20:38:37 +14 2024 I: pbuilder-time-stamp: 1719988717