I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 3 16:59:44 +14 2025 I: pbuilder-time-stamp: 1748919584 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dextractor_1.0-6.dsc] I: copying [./dextractor_1.0.orig.tar.gz] I: copying [./dextractor_1.0-6.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 3 12:39:03 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dextractor_1.0-6.dsc: no acceptable signature found dpkg-source: info: extracting dextractor in dextractor-1.0 dpkg-source: info: unpacking dextractor_1.0.orig.tar.gz dpkg-source: info: unpacking dextractor_1.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_system_packaged_libhdf5-dev.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/799555/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 3 02:59 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/799555/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/799555/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=832087e8124546358bf98de821598fc8 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=799555 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ehhiyLY5/pbuilderrc_biiV --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ehhiyLY5/b2 --logfile b2/build.log dextractor_1.0-6.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 26 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/799555/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19941 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 75.9 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libhdf5-dev but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libssl3 [3.1.5-1 (now)] Install the following packages: 2) hdf5-helpers [1.10.10+repack-3+b1 (testing)] 3) libaec-dev [1.1.3-1 (testing)] 4) libaec0 [1.1.3-1 (testing)] 5) libbrotli1 [1.1.0-2+b3 (testing)] 6) libcurl3t64-gnutls [8.7.1-3 (testing)] 7) libcurl4-gnutls-dev [8.7.1-3 (testing)] 8) libcurl4t64 [8.7.1-3 (testing)] 9) libgfortran5 [14-20240330-1 (testing)] 10) libhdf5-103-1 [1.10.10+repack-3+b1 (testing)] 11) libhdf5-cpp-103-1 [1.10.10+repack-3+b1 (testing)] 12) libhdf5-dev [1.10.10+repack-3+b1 (testing)] 13) libhdf5-fortran-102 [1.10.10+repack-3+b1 (testing)] 14) libhdf5-hl-100 [1.10.10+repack-3+b1 (testing)] 15) libhdf5-hl-cpp-100 [1.10.10+repack-3+b1 (testing)] 16) libhdf5-hl-fortran-100 [1.10.10+repack-3+b1 (testing)] 17) libjpeg62-turbo [1:2.1.5-2+b2 (testing)] 18) libjpeg62-turbo-dev [1:2.1.5-2+b2 (testing)] 19) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] 20) libnghttp2-14 [1.59.0-1 (testing)] 21) libpsl5t64 [0.21.2-1.1 (testing)] 22) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] 23) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] 24) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] 25) libssh2-1t64 [1.11.0-4.1+b2 (testing)] 26) libssl-dev [3.2.1-3 (testing)] 27) libssl3t64 [3.2.1-3 (testing)] 28) libsz2 [1.1.3-1 (testing)] 29) zlib1g-dev [1:1.3.dfsg-3.1 (testing)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssl-dev{a} libssl3t64{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages will be REMOVED: libssl3{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 58 newly installed, 1 to remove and 0 not upgraded. Need to get 32.4 MB of archives. After unpacking 126 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libssl3t64 arm64 3.2.1-3 [2537 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.39.3-6 [90.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 hdf5-helpers arm64 1.10.10+repack-3+b1 [23.5 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Get: 35 http://deb.debian.org/debian trixie/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-4+b1 [20.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-4+b1 [55.5 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5+b3 [172 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.59.0-1 [70.2 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b2 [207 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.7.1-3 [405 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.7.1-3 [523 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.7.1-3 [412 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libhdf5-103-1 arm64 1.10.10+repack-3+b1 [1036 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3+b1 [119 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3+b1 [87.9 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-100 arm64 1.10.10+repack-3+b1 [59.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3+b1 [38.5 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3+b1 [21.1 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-2+b2 [172 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-2+b2 [293 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.2.1-3 [3089 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libhdf5-dev arm64 1.10.10+repack-3+b1 [2691 kB] Fetched 32.4 MB in 0s (156 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19941 files and directories currently installed.) Removing libssl3:arm64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19928 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_arm64.deb ... Unpacking libssl3t64:arm64 (3.2.1-3) ... Setting up libssl3t64:arm64 (3.2.1-3) ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19943 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3+b1_arm64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_arm64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_arm64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. 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Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libsz2:arm64 (1.1.3-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libaec-dev:arm64 (1.1.3-1) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libcurl4t64:arm64 (8.7.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:arm64 (8.7.1-3) ... Setting up libcurl4-gnutls-dev:arm64 (8.7.1-3) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libhdf5-103-1:arm64 (1.10.10+repack-3+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/799555/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/799555/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/dextractor-1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dextractor_1.0-6_source.changes dpkg-buildpackage: info: source package dextractor dpkg-buildpackage: info: source version 1.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/dextractor-1.0' dh_auto_clean make -j12 clean make[2]: Entering directory '/build/reproducible-path/dextractor-1.0' rm -f dextract dexta undexta dexqv undexqv dextract.tar.gz rm -fr *.dSYM rm -f dextract.tar.gz make[2]: Leaving directory '/build/reproducible-path/dextractor-1.0' rm -rf bin make[1]: Leaving directory '/build/reproducible-path/dextractor-1.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/dextractor-1.0' dh_auto_build -- ARGS="-I/usr/include/hdf5/serial -L/usr/lib/aarch64-linux-gnu/hdf5/serial" make -j12 "INSTALL=install --strip-program=true" "ARGS=-I/usr/include/hdf5/serial -L/usr/lib/aarch64-linux-gnu/hdf5/serial" make[2]: Entering directory '/build/reproducible-path/dextractor-1.0' #gcc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial/ -L/usr/lib/aarch64-linux-gnu/hdf5/serial/ -o dextract dextract.c DB.c QV.c -lhdf5 cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexta dexta.c DB.c QV.c cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexta undexta.c DB.c QV.c cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexqv dexqv.c DB.c QV.c cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexqv undexqv.c DB.c QV.c cc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial -L/usr/lib/aarch64-linux-gnu/hdf5/serial -o dextract dextract.c DB.c QV.c -lhdf5 In function ‘writeBaxReads’, inlined from ‘main’ at dextract.c:603:13: dextract.c:399:30: warning: ‘b.delLimit’ may be used uninitialized [-Wmaybe-uninitialized] 399 | { if (delQV[a] == d) | ^ dextract.c: In function ‘main’: dextract.c:488:11: note: ‘b.delLimit’ was declared here 488 | BaxData b; | ^ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/dextractor-1.0' make[1]: Leaving directory '/build/reproducible-path/dextractor-1.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dextractor/ make -j12 install DESTDIR=/build/reproducible-path/dextractor-1.0/debian/dextractor AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dextractor-1.0' mkdir bin/ cp dextract dexta undexta dexqv undexqv bin/ make[1]: Leaving directory '/build/reproducible-path/dextractor-1.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dextractor-dbgsym' in '../dextractor-dbgsym_1.0-6_arm64.deb'. dpkg-deb: building package 'dextractor' in '../dextractor_1.0-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../dextractor_1.0-6_arm64.buildinfo dpkg-genchanges --build=binary -O../dextractor_1.0-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/799555/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/799555/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/799555 and its subdirectories I: Current time: Tue Jun 3 17:00:21 +14 2025 I: pbuilder-time-stamp: 1748919621