I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 27 16:18:07 +14 2024 I: pbuilder-time-stamp: 1714184287 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [spoa_4.1.4-1.dsc] I: copying [./spoa_4.1.4.orig.tar.gz] I: copying [./spoa_4.1.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Mar 21 11:56:06 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./spoa_4.1.4-1.dsc: no acceptable signature found dpkg-source: info: extracting spoa in spoa-4.1.4 dpkg-source: info: unpacking spoa_4.1.4.orig.tar.gz dpkg-source: info: unpacking spoa_4.1.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-ftbfs-gcc-10.patch dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2098299/tmp/hooks/D01_modify_environment starting debug: Running on infom01-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 27 02:18 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2098299/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2098299/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=6dd26ae3350447bca085998b2ba50e01 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2098299 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pl6SXdYD/pbuilderrc_I43i --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pl6SXdYD/b2 --logfile b2/build.log spoa_4.1.4-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.1.0-20-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 23 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2098299/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, libcpu-features-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libcpu-features-dev; however: Package libcpu-features-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbioparser-dev{a} libbiosoup-dev{a} libcereal-dev{a} libcpu-features-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsimde-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 21.5 MB of archives. After unpacking 90.5 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: cmake but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libssl3 [3.1.5-1 (now)] Install the following packages: 2) cmake [3.28.3-1 (testing)] 3) cmake-data [3.28.3-1 (testing)] 4) libarchive13t64 [3.7.2-2 (testing)] 5) libbrotli1 [1.1.0-2+b3 (testing)] 6) libcurl4t64 [8.7.1-3 (testing)] 7) libexpat1 [2.6.2-1 (testing)] 8) libjsoncpp25 [1.9.5-6+b2 (testing)] 9) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] 10) libnghttp2-14 [1.59.0-1 (testing)] 11) libproc2-0 [2:4.0.4-4 (testing)] 12) libpsl5t64 [0.21.2-1.1 (testing)] 13) librhash0 [1.4.3-3+b1 (testing)] 14) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] 15) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] 16) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] 17) libssh2-1t64 [1.11.0-4.1+b2 (testing)] 18) libssl3t64 [3.2.1-3 (testing)] 19) libuv1 [1.48.0-1 (testing)] 20) procps [2:4.0.4-4 (testing)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcpu-features-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libssl3t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages will be REMOVED: libssl3{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 59 newly installed, 1 to remove and 0 not upgraded. Need to get 39.6 MB of archives. After unpacking 148 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libuv1 amd64 1.48.0-1 [147 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.28.3-1 [2128 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.28.3-1 [10.5 MB] Get: 37 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.106 [10.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 45 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 googletest all 1.14.0-1 [512 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 53 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libcpu-features-dev amd64 0.9.0-1+b1 [22.0 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.14.0-1+b1 [250 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libsimde-dev all 0.8.0-1 [458 kB] Fetched 39.6 MB in 0s (102 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: libkrb5-3:amd64 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Removing libssl3:amd64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19884 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.1-3) ... Setting up libssl3t64:amd64 (3.2.1-3) ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19899 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../04-libmagic1_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-2+b1_amd64.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3+b1_amd64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.39.3-6_amd64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.0-3_amd64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../17-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../19-libarchive13t64_3.7.2-2_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.2-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg1-4+b1_amd64.deb ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libgtest-dev:amd64 (1.14.0-1+b1) ... Setting up libtool (2.4.7-7) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libarchive13t64:amd64 (3.7.2-2) ... Setting up libcurl4t64:amd64 (8.7.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.28.3-1) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2098299/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2098299/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/spoa-4.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../spoa_4.1.4-1_source.changes dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.1.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY spoa_build_executable -- Build files have been written to: /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_auto_build -O--no-parallel cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_avx2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -mavx2 -MD -MT CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatch.cpp make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 5%] Built target spoa_avx2 make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 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-fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -msse4.1 -MD -MT CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatch.cpp make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 11%] Built target spoa_sse4.1 make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 17%] Building CXX object CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -msse2 -MD -MT CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatch.cpp make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 17%] Built target spoa_sse2 make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 23%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 29%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 35%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatcher.cpp [ 41%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 47%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/version.cpp [ 52%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 52%] Built target spoa make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 58%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 70%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 76%] Linking CXX static library lib/libspoa_static.a /usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/ranlib lib/libspoa_static.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 76%] Built target spoa_static make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 82%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/main.cpp [ 88%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/lib: lib/libspoa.so.7.0.0 -lz /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 88%] Built target spoa_exe make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 94%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /build/reproducible-path/spoa-4.1.4/test/spoa_test.cpp [100%] Linking CXX executable bin/spoa_test /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/lib lib/libspoa.so.7.0.0 -lz /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [100%] Built target spoa_test make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' `find . -name spoa_test` Running main() from ./googletest/src/gtest_main.cc [==========] Running 22 tests from 2 test suites. [----------] Global test environment set-up. [----------] 3 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.TypeError [ OK ] SpoaAlignmentTest.TypeError (0 ms) [ RUN ] SpoaAlignmentTest.EmptyInput [ OK ] SpoaAlignmentTest.EmptyInput (0 ms) [ RUN ] SpoaAlignmentTest.LargeInput [ OK ] SpoaAlignmentTest.LargeInput (0 ms) [----------] 3 tests from SpoaAlignmentTest (0 ms total) [----------] 19 tests from SpoaTest [ RUN ] SpoaTest.Clear [ OK ] SpoaTest.Clear (111 ms) [ RUN ] SpoaTest.Local [ OK ] SpoaTest.Local (43 ms) [ RUN ] SpoaTest.LocalAffine [ OK ] SpoaTest.LocalAffine (62 ms) [ RUN ] SpoaTest.LocalConvex [ OK ] SpoaTest.LocalConvex (70 ms) [ RUN ] SpoaTest.LocalWithQualities [ OK ] SpoaTest.LocalWithQualities (41 ms) [ RUN ] SpoaTest.LocalAffineWithQualities [ OK ] SpoaTest.LocalAffineWithQualities (62 ms) [ RUN ] SpoaTest.LocalConvexWithQualities [ OK ] SpoaTest.LocalConvexWithQualities (70 ms) [ RUN ] SpoaTest.Global [ OK ] SpoaTest.Global (40 ms) [ RUN ] SpoaTest.GlobalAffine [ OK ] SpoaTest.GlobalAffine (60 ms) [ RUN ] SpoaTest.GlobalConvex [ OK ] SpoaTest.GlobalConvex (68 ms) [ RUN ] SpoaTest.GlobalWithQualities [ OK ] SpoaTest.GlobalWithQualities (40 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities [ OK ] SpoaTest.GlobalAffineWithQualities (60 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities [ OK ] SpoaTest.GlobalConvexWithQualities (68 ms) [ RUN ] SpoaTest.SemiGlobal [ OK ] SpoaTest.SemiGlobal (40 ms) [ RUN ] SpoaTest.SemiGlobalAffine [ OK ] SpoaTest.SemiGlobalAffine (60 ms) [ RUN ] SpoaTest.SemiGlobalConvex [ OK ] SpoaTest.SemiGlobalConvex (68 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities [ OK ] SpoaTest.SemiGlobalWithQualities (40 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities [ OK ] SpoaTest.SemiGlobalAffineWithQualities (60 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities [ OK ] SpoaTest.SemiGlobalConvexWithQualities (68 ms) [----------] 19 tests from SpoaTest (1143 ms total) [----------] Global test environment tear-down [==========] 22 tests from 2 test suites ran. (1145 ms total) [ PASSED ] 22 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/spoa-4.1.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0 -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa_static.a -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/version.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaTargets.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaTargets-release.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaConfig.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaConfigVersion.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa -- Set non-toolchain portion of runtime path of "/build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --exclude-a \ --movedev debian/tmp/usr/include/spoa usr/include \ --movedev debian/tmp/usr/lib/x86_64-linux-gnu/cmake /usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu PKGDEV=libspoa-dev PKGSHL=libspoa7.0.0 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev//usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libspoa-dev//usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installexamples -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dpkg-gensymbols: warning: debian/libspoa7.0.0/DEBIAN/symbols doesn't match completely debian/libspoa7.0.0.symbols.amd64 --- debian/libspoa7.0.0.symbols.amd64 (libspoa7.0.0_4.1.4-1_amd64) +++ dpkg-gensymbols2Z303A 2024-04-27 02:19:45.688711648 +0000 @@ -28,8 +28,8 @@ GetXCR0Eax@Base 4.0.7 StackLineReader_Initialize@Base 4.0.7 StackLineReader_NextLine@Base 4.0.7 - (optional)_ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 - (optional)_ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 _ZN4spoa15AlignmentEngine5AlignERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_5GraphEPi@Base 4.0.5 _ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaa@Base 4.0.5 _ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaaa@Base 4.0.5 @@ -120,10 +120,10 @@ _ZN4spoa5GraphD1Ev@Base 1.1.3 _ZN4spoa5GraphD2Ev@Base 1.1.3 _ZN4spoa7VersionB5cxx11Ev@Base 4.1.4 - (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEv@Base 4.0.5 - (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 - (optional)_ZN6cereal6detail18PolymorphicCastersD1Ev@Base 4.0.5 - (optional)_ZN6cereal6detail18PolymorphicCastersD2Ev@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEv@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZN6cereal6detail18PolymorphicCastersD1Ev@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZN6cereal6detail18PolymorphicCastersD2Ev@Base 4.0.5 _ZNK4spoa15AlignmentEngine23WorstCaseAlignmentScoreEll@Base 4.0.5 _ZNK4spoa5Graph15ExtractSubgraphEPKNS0_4NodeES3_@Base 4.0.5 _ZNK4spoa5Graph15UpdateAlignmentERKSt6vectorIPKNS0_4NodeESaIS4_EEPS1_ISt4pairIiiESaISA_EE@Base 4.0.5 @@ -134,7 +134,7 @@ _ZNK4spoa5Graph8PrintDotERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 4.0.5 _ZNK4spoa5Graph8SubgraphEjjPSt6vectorIPKNS0_4NodeESaIS4_EE@Base 4.0.5 _ZNKSt5ctypeIcE8do_widenEc@Base 1.1.5 - (optional)_ZNSt10_HashtableISt10type_indexSt4pairIKS0_St13unordered_mapIS0_St6vectorIPKN6cereal6detail17PolymorphicCasterESaIS9_EESt4hashIS0_ESt8equal_toIS0_ESaIS1_IS2_SB_EEEESaISJ_ENSt8__detail10_Select1stESF_SD_NSL_18_Mod_range_hashingENSL_20_Default_ranged_hashENSL_20_Prime_rehash_policyENSL_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZNSt10_HashtableISt10type_indexSt4pairIKS0_St13unordered_mapIS0_St6vectorIPKN6cereal6detail17PolymorphicCasterESaIS9_EESt4hashIS0_ESt8equal_toIS0_ESaIS1_IS2_SB_EEEESaISJ_ENSt8__detail10_Select1stESF_SD_NSL_18_Mod_range_hashingENSL_20_Default_ranged_hashENSL_20_Prime_rehash_policyENSL_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 4.0.5 _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 1.1.3 _ZNSt5dequeIPKN4spoa5Graph4NodeESaIS4_EE16_M_push_back_auxIJRKS4_EEEvDpOT_@Base 4.0.5 _ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 4.0.5 @@ -143,25 +143,25 @@ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 _ZNSt6vectorIPKN4spoa5Graph4NodeESaIS4_EE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPS4_S6_EEmRKS4_@Base 4.0.5 _ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJRS3_EEEvDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJRS3_EEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 4.0.5 _ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 _ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED1Ev@Base 4.1.4 _ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED2Ev@Base 4.1.4 _ZNSt6vectorISt10unique_ptrIN4spoa5Graph4EdgeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.7 _ZNSt6vectorISt10unique_ptrIN4spoa5Graph4NodeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRjiEEEvDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 3.4.0 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0 +#MISSING: 4.1.4-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRjiEEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0 +#MISSING: 4.1.4-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 3.4.0 +#MISSING: 4.1.4-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0 _ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJRjiEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 _ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJijEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3 _ZNSt6vectorIiSaIiEED1Ev@Base 4.1.4 _ZNSt6vectorIiSaIiEED2Ev@Base 4.1.4 - (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 3.4.0 +#MISSING: 4.1.4-1# (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 3.4.0 _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj@Base 1.1.3 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 4.0.5 _ZNSt6vectorIjSaIjEED1Ev@Base 4.1.4 _ZNSt6vectorIjSaIjEED2Ev@Base 4.1.4 _ZTIN4spoa15AlignmentEngineE@Base 1.1.3 @@ -179,4 +179,4 @@ _ZTVN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EEE@Base 4.0.5 _ZTVN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EEE@Base 4.0.5 _ZTVN4spoa19SisdAlignmentEngineE@Base 1.1.3 - (optional)_ZZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 +#MISSING: 4.1.4-1# (optional)_ZZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 dh_shlibdeps -a -O--no-parallel dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'spoa' in '../spoa_4.1.4-1_amd64.deb'. dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-1_amd64.deb'. dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-1_amd64.deb'. dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-1_amd64.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../spoa_4.1.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../spoa_4.1.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2098299/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2098299/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2098299 and its subdirectories I: Current time: Sat Apr 27 16:19:48 +14 2024 I: pbuilder-time-stamp: 1714184388