I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 14 07:08:14 +14 2025 I: pbuilder-time-stamp: 1749834494 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.2+ds-2.dsc] I: copying [./seqan-needle_1.0.2+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.2+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 8 18:55:15 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.2+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.2+ds dpkg-source: info: unpacking seqan-needle_1.0.2+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.2+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 743f0c2db4ed59aeb6b76744aa8485f208b9f9d2.patch dpkg-source: info: applying privacy dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4167960/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 13 17:08 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4167960/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4167960/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=7be590149fc94e5d831267ce4466a229 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4167960 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QBF952Fg/pbuilderrc_gIDb --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QBF952Fg/b2 --logfile b2/build.log seqan-needle_1.0.2+ds-2.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 11 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4167960/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkg-config, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp16t64{a} libclang1-16t64{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libllvm16t64{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 92.4 MB of archives. After unpacking 416 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-5 [441 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 49 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libllvm16t64 amd64 1:16.0.6-27 [23.1 MB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libclang-cpp16t64 amd64 1:16.0.6-27 [11.5 MB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libclang1-16t64 amd64 1:16.0.6-27 [6581 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 googletest all 1.14.0-1 [512 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.14.0-1+b1 [250 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libseqan3-dev all 3.3.0+ds-1 [758 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Fetched 92.4 MB in 2s (60.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../17-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../19-libarchive13t64_3.7.2-2_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.2-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../21-libkrb5support0_1.20.1-6+b1_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/4167960/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/4167960/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/seqan-needle-1.0.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-needle_1.0.2+ds-2_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.2+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Komolehin Israel Timilehin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds' rm -Rf lib/seqan3 dh_auto_configure -- -DSEQAN3_NO_LEMON=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN3_NO_LEMON=OFF .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- You can run `make test` to build and run tests. -- Configuring done (5.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED SEQAN3_NO_LEMON -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds' dh_auto_build --arch cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.2+ds -B/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o [ 40%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In function ‘void fill_hash_table_parallel(const min_arguments&, seqan3::sequence_file_input >&, robin_hood::unordered_node_map&, robin_hood::unordered_node_map&, robin_hood::unordered_set&, robin_hood::unordered_set&, bool, uint8_t)’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:242:38: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 242 | seqan3::detail::latch sync_point{thread_count}; | ^~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:243:40: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 243 | seqan3::detail::latch sync_point_2{thread_count}; | ^~~~~~~~~~~~ [ 60%] Linking CXX static library ../lib/libneedle_lib.a cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/needle_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libneedle_lib.a CMakeFiles/needle_lib.dir/ibf.cpp.o CMakeFiles/needle_lib.dir/estimate.cpp.o /usr/bin/ranlib ../lib/libneedle_lib.a make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 60%] Built target needle_lib make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle.dir/main.cpp.o -MF CMakeFiles/needle.dir/main.cpp.o.d -o CMakeFiles/needle.dir/main.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/src/main.cpp [100%] Linking CXX executable ../bin/needle cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/needle.dir/main.cpp.o -o ../bin/needle ../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [100%] Built target needle make[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' obj-*/bin/needle --export-help man > debian/needle.1 obj-*/bin/needle count --export-help man > debian/needle-count.1 obj-*/bin/needle estimate --export-help man > debian/needle-estimate.1 obj-*/bin/needle ibf --export-help man > debian/needle-ibf.1 obj-*/bin/needle minimiser --export-help man > debian/needle-minimiser.1 make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds' doxygen doc/doxygen_cfg warning: Tag 'HTML_TIMESTAMP' at line 220 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 256 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 291 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 360 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 361 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 389 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: tag INCLUDE_PATH: include path '${CMAKE_SOURCE_DIR}/include' does not exist warning: source '${CMAKE_SOURCE_DIR}/include' is not a readable file or directory... skipping. Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-needle-1.0.2+ds/include Searching for files in directory /build/reproducible-path/seqan-needle-1.0.2+ds/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/seqan-needle-1.0.2+ds/include/estimate.h... Parsing file /build/reproducible-path/seqan-needle-1.0.2+ds/include/estimate.h... Preprocessing /build/reproducible-path/seqan-needle-1.0.2+ds/include/ibf.h... Parsing file /build/reproducible-path/seqan-needle-1.0.2+ds/include/ibf.h... Preprocessing /build/reproducible-path/seqan-needle-1.0.2+ds/include/shared.h... Parsing file /build/reproducible-path/seqan-needle-1.0.2+ds/include/shared.h... Preprocessing /build/reproducible-path/seqan-needle-1.0.2+ds/src/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-needle-1.0.2+ds/src/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.2+ds/src/main.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.2+ds/src/main.cpp... Reading /build/reproducible-path/seqan-needle-1.0.2+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/seqan-needle-1.0.2+ds/include/estimate.h... Generating code for file /build/reproducible-path/seqan-needle-1.0.2+ds/include/ibf.h... Generating code for file /build/reproducible-path/seqan-needle-1.0.2+ds/include/shared.h... Generating file documentation... Generating docs for file /build/reproducible-path/seqan-needle-1.0.2+ds/include/estimate.h... Generating docs for file /build/reproducible-path/seqan-needle-1.0.2+ds/include/ibf.h... Generating docs for file /build/reproducible-path/seqan-needle-1.0.2+ds/include/shared.h... Generating docs for file /build/reproducible-path/seqan-needle-1.0.2+ds/LICENSE.md... Generating docs for file /build/reproducible-path/seqan-needle-1.0.2+ds/src/CMakeLists.txt... Generating docs for file /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.2+ds/src/main.cpp... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2seqan-needle-1_80_82_09ds_2_l_i_c_e_n_s_e... Generating group documentation... Generating class documentation... Generating docs for compound all_arguments... Generating docs for compound estimate_arguments... Generating docs for compound estimate_ibf_arguments... Generating docs for compound min_arguments... Generating docs for compound minimiser_arguments... Generating docs for compound my_traits... Generating docs for compound RandomGenerator... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 125/65536 hits=272 misses=132 symbol lookup cache used 135/65536 hits=325 misses=135 finished... make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds' echo "Do Nothing" Do Nothing make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds' dh_auto_test -Nseqan-needle-doc cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu Constructing a list of tests Change Dir: '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile api_test gmake[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test' gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/rule gmake[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.2+ds -B/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/CMakeFiles 15 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/all gmake[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake "--color=" Dependencies file "src/CMakeFiles/needle_lib.dir/estimate.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/compiler_depend.internal". Dependencies file "src/CMakeFiles/needle_lib.dir/ibf.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target needle_lib gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/CMakeFiles/needle_lib.dir/build'. gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 20%] Built target needle_lib /usr/bin/gmake -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/minimiser_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 26%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/api/minimiser_test.cpp [ 33%] Linking CXX executable minimiser_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -o minimiser_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 33%] Built target minimiser_test /usr/bin/gmake -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/count_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 40%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/api/count_test.cpp [ 46%] Linking CXX executable count_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/count_test.dir/count_test.cpp.o -o count_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 46%] Built target count_test /usr/bin/gmake -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/insert_delete_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 53%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -MF CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o.d -o CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/api/insert_delete_test.cpp [ 60%] Linking CXX executable insert_delete_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_delete_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -o insert_delete_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 60%] Built target insert_delete_test /usr/bin/gmake -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/estimate_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 66%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/api/estimate_test.cpp [ 73%] Linking CXX executable estimate_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/estimate_test.dir/estimate_test.cpp.o -o estimate_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 73%] Built target estimate_test /usr/bin/gmake -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibf_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 80%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/api/ibf_test.cpp [ 86%] Linking CXX executable ibf_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ibf_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 86%] Built target ibf_test /usr/bin/gmake -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibfmin_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 93%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/api/ibfmin_test.cpp [100%] Linking CXX executable ibfmin_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ibfmin_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [100%] Built target ibfmin_test /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/api_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/api_test.dir/build'. gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [100%] Built target api_test gmake[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' gmake[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test' Change Dir: '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile cli_test gmake[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test' gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule gmake[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.2+ds -B/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/CMakeFiles 70 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/all gmake[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--exp_01.fasta.dir/build.make test/CMakeFiles/datasource--exp_01.fasta.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--exp_01.fasta.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--exp_01.fasta.dir/build.make test/CMakeFiles/datasource--exp_01.fasta.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 1%] Creating directories for 'datasource--exp_01.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--exp_01.fasta-mkdirs.cmake cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-mkdir [ 2%] Performing download step (verify) for 'datasource--exp_01.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/verify-datasource--exp_01.fasta.cmake -- verifying file... file='/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/exp_01.fasta' -- verifying file... done cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-download [ 4%] No update step for 'datasource--exp_01.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-update [ 5%] No patch step for 'datasource--exp_01.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-patch [ 7%] No configure step for 'datasource--exp_01.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-configure [ 8%] No build step for 'datasource--exp_01.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-build [ 10%] Performing install step for 'datasource--exp_01.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E create_symlink /build/reproducible-path/seqan-needle-1.0.2+ds/test/data/exp_01.fasta /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/exp_01.fasta cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-install [ 11%] No test step for 'datasource--exp_01.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-test [ 12%] Completed 'datasource--exp_01.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--exp_01.fasta-complete cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-done gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 12%] Built target datasource--exp_01.fasta /usr/bin/gmake -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/CMakeFiles/needle_lib.dir/build'. gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 17%] Built target needle_lib /usr/bin/gmake -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/DependInfo.cmake "--color=" Dependencies file "src/CMakeFiles/needle.dir/main.cpp.o.d" is newer than depends file "/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target needle gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/CMakeFiles/needle.dir/build'. gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 20%] Built target needle /usr/bin/gmake -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/delete_options_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 21%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -MF CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o.d -o CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/delete_options_test.cpp [ 22%] Linking CXX executable delete_options_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/delete_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -o delete_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 22%] Built target delete_options_test /usr/bin/gmake -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/needle_options_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 24%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/needle_options_test.cpp [ 25%] Linking CXX executable needle_options_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -o needle_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 25%] Built target needle_options_test /usr/bin/gmake -f test/CMakeFiles/datasource--mini_example.minimiser.dir/build.make test/CMakeFiles/datasource--mini_example.minimiser.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_example.minimiser.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--mini_example.minimiser.dir/build.make test/CMakeFiles/datasource--mini_example.minimiser.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 27%] Creating directories for 'datasource--mini_example.minimiser' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--mini_example.minimiser-mkdirs.cmake cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-mkdir [ 28%] Performing download step (verify) for 'datasource--mini_example.minimiser' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/verify-datasource--mini_example.minimiser.cmake -- verifying file... file='/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/mini_example.minimiser' -- verifying file... done cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-download [ 30%] No update step for 'datasource--mini_example.minimiser' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-update [ 31%] No patch step for 'datasource--mini_example.minimiser' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-patch [ 32%] No configure step for 'datasource--mini_example.minimiser' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-configure [ 34%] No build step for 'datasource--mini_example.minimiser' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-build [ 35%] Performing install step for 'datasource--mini_example.minimiser' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E create_symlink /build/reproducible-path/seqan-needle-1.0.2+ds/test/data/mini_example.minimiser /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/mini_example.minimiser cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-install [ 37%] No test step for 'datasource--mini_example.minimiser' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-test [ 38%] Completed 'datasource--mini_example.minimiser' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_example.minimiser-complete cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-done gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 38%] Built target datasource--mini_example.minimiser /usr/bin/gmake -f test/CMakeFiles/datasource--mini_example.fasta.dir/build.make test/CMakeFiles/datasource--mini_example.fasta.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_example.fasta.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--mini_example.fasta.dir/build.make test/CMakeFiles/datasource--mini_example.fasta.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 40%] Creating directories for 'datasource--mini_example.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--mini_example.fasta-mkdirs.cmake cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-mkdir [ 41%] Performing download step (verify) for 'datasource--mini_example.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/verify-datasource--mini_example.fasta.cmake -- verifying file... file='/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/mini_example.fasta' -- verifying file... done cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-download [ 42%] No update step for 'datasource--mini_example.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-update [ 44%] No patch step for 'datasource--mini_example.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-patch [ 45%] No configure step for 'datasource--mini_example.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-configure [ 47%] No build step for 'datasource--mini_example.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-build [ 47%] Performing install step for 'datasource--mini_example.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E create_symlink /build/reproducible-path/seqan-needle-1.0.2+ds/test/data/mini_example.fasta /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/mini_example.fasta cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-install [ 48%] No test step for 'datasource--mini_example.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-test [ 50%] Completed 'datasource--mini_example.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_example.fasta-complete cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-done gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 50%] Built target datasource--mini_example.fasta /usr/bin/gmake -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/ibf_options_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 51%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/ibf_options_test.cpp [ 52%] Linking CXX executable ibf_options_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -o ibf_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 52%] Built target ibf_options_test /usr/bin/gmake -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/insert_options_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 54%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -MF CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o.d -o CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/insert_options_test.cpp [ 55%] Linking CXX executable insert_options_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -o insert_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 55%] Built target insert_options_test /usr/bin/gmake -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 57%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -MF CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o.d -o CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/minimiser_options_test.cpp [ 58%] Linking CXX executable minimiser_options_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o minimiser_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 58%] Built target minimiser_options_test /usr/bin/gmake -f test/CMakeFiles/datasource--mini_gen.fasta.dir/build.make test/CMakeFiles/datasource--mini_gen.fasta.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_gen.fasta.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--mini_gen.fasta.dir/build.make test/CMakeFiles/datasource--mini_gen.fasta.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 60%] Creating directories for 'datasource--mini_gen.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--mini_gen.fasta-mkdirs.cmake cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-mkdir [ 61%] Performing download step (verify) for 'datasource--mini_gen.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/verify-datasource--mini_gen.fasta.cmake -- verifying file... file='/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/mini_gen.fasta' -- verifying file... done cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-download [ 62%] No update step for 'datasource--mini_gen.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-update [ 64%] No patch step for 'datasource--mini_gen.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-patch [ 65%] No configure step for 'datasource--mini_gen.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-configure [ 67%] No build step for 'datasource--mini_gen.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-build [ 68%] Performing install step for 'datasource--mini_gen.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E create_symlink /build/reproducible-path/seqan-needle-1.0.2+ds/test/data/mini_gen.fasta /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/mini_gen.fasta cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-install [ 70%] No test step for 'datasource--mini_gen.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-test [ 71%] Completed 'datasource--mini_gen.fasta' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_gen.fasta-complete cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-done gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 71%] Built target datasource--mini_gen.fasta /usr/bin/gmake -f test/CMakeFiles/datasource--ibf_1.dir/build.make test/CMakeFiles/datasource--ibf_1.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--ibf_1.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--ibf_1.dir/build.make test/CMakeFiles/datasource--ibf_1.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 72%] Creating directories for 'datasource--ibf_1' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--ibf_1-mkdirs.cmake cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-mkdir [ 74%] Performing download step (verify) for 'datasource--ibf_1' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/verify-datasource--ibf_1.cmake -- verifying file... file='/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/IBF_1' -- verifying file... done cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-download [ 75%] No update step for 'datasource--ibf_1' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-update [ 77%] No patch step for 'datasource--ibf_1' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-patch [ 78%] No configure step for 'datasource--ibf_1' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-configure [ 80%] No build step for 'datasource--ibf_1' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-build [ 81%] Performing install step for 'datasource--ibf_1' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E create_symlink /build/reproducible-path/seqan-needle-1.0.2+ds/test/data/IBF_1 /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/IBF_1 cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-install [ 82%] No test step for 'datasource--ibf_1' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-test [ 84%] Completed 'datasource--ibf_1' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--ibf_1-complete cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-done gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 84%] Built target datasource--ibf_1 /usr/bin/gmake -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/estimate_options_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 85%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/estimate_options_test.cpp [ 87%] Linking CXX executable estimate_options_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -o estimate_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 87%] Built target estimate_options_test /usr/bin/gmake -f test/CMakeFiles/datasource--mini_gen.genome.dir/build.make test/CMakeFiles/datasource--mini_gen.genome.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_gen.genome.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--mini_gen.genome.dir/build.make test/CMakeFiles/datasource--mini_gen.genome.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 88%] Creating directories for 'datasource--mini_gen.genome' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--mini_gen.genome-mkdirs.cmake cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/datasource--mini_gen.genome-mkdir [ 88%] Performing download step (verify) for 'datasource--mini_gen.genome' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/verify-datasource--mini_gen.genome.cmake -- verifying file... file='/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/mini_gen.genome' -- verifying file... done cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/datasource--mini_gen.genome-download [ 90%] No update step for 'datasource--mini_gen.genome' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/datasource--mini_gen.genome-update [ 91%] No patch step for 'datasource--mini_gen.genome' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/datasource--mini_gen.genome-patch [ 92%] No configure step for 'datasource--mini_gen.genome' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/datasource--mini_gen.genome-configure [ 94%] No build step for 'datasource--mini_gen.genome' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/datasource--mini_gen.genome-build [ 95%] Performing install step for 'datasource--mini_gen.genome' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-build && /usr/bin/cmake -E create_symlink /build/reproducible-path/seqan-needle-1.0.2+ds/test/data/mini_gen.genome /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/mini_gen.genome cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/datasource--mini_gen.genome-install [ 97%] No test step for 'datasource--mini_gen.genome' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-build && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-build && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/datasource--mini_gen.genome-test [ 98%] Completed 'datasource--mini_gen.genome' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_gen.genome-complete cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.genome-stamp/datasource--mini_gen.genome-done gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 98%] Built target datasource--mini_gen.genome /usr/bin/gmake -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [ 98%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -MF CMakeFiles/count_options_test.dir/count_options_test.cpp.o.d -o CMakeFiles/count_options_test.dir/count_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/test/cli/count_options_test.cpp [100%] Linking CXX executable count_options_test cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/count_options_test.dir/count_options_test.cpp.o -o count_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [100%] Built target count_options_test /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/depend gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/CMakeFiles/cli_test.dir/DependInfo.cmake "--color=" gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/build gmake[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/cli_test.dir/build'. gmake[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' [100%] Built target cli_test gmake[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' gmake[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test' Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test/api/count_test 1: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/count_test 1: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: test/api/insert_delete_test 2: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/insert_delete_test 2: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api 2: Test timeout computed to be: 10000000 test 3 Start 3: test/api/estimate_test 3: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/estimate_test 3: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api 3: Test timeout computed to be: 10000000 test 4 Start 4: test/api/ibf_test 4: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/ibf_test 4: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api 4: Test timeout computed to be: 10000000 test 5 Start 5: test/api/ibfmin_test 5: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/ibfmin_test 5: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api 5: Test timeout computed to be: 10000000 test 6 Start 6: test/api/minimiser_test 6: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api/minimiser_test 6: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/api 6: Test timeout computed to be: 10000000 test 7 Start 7: test/cli/needle_options_test 7: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/needle_options_test 7: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli 7: Test timeout computed to be: 10000000 test 8 Start 8: test/cli/ibf_options_test 8: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/ibf_options_test 8: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli 8: Test timeout computed to be: 10000000 test 9 Start 9: test/cli/insert_options_test 9: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/insert_options_test 9: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli 9: Test timeout computed to be: 10000000 test 10 Start 10: test/cli/minimiser_options_test 10: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/minimiser_options_test 10: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli 10: Test timeout computed to be: 10000000 test 11 Start 11: test/cli/estimate_options_test 11: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/estimate_options_test 11: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli 11: Test timeout computed to be: 10000000 test 12 Start 12: test/cli/count_options_test 12: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/count_options_test 12: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli 12: Test timeout computed to be: 10000000 test 13 Start 13: test/cli/delete_options_test 13: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli/delete_options_test 13: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu/test/cli 13: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 4 tests from 2 test suites. 1: [----------] Global test environment set-up. 1: [----------] 3 tests from count 1: [ RUN ] count.small_example 1: [ OK ] count.small_example (1 ms) 1: [ RUN ] count.small_example_paired 1: [ OK ] count.small_example_paired (1 ms) 1: [ RUN ] count.small_example_exclude 1: [ OK ] count.small_example_exclude (0 ms) 1: [----------] 3 tests from count (2 ms total) 1: 1: [----------] 1 test from genome 1: [ RUN ] genome.small_example 1: [ OK ] genome.small_example (0 ms) 1: [----------] 1 test from genome (0 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 4 tests from 2 test suites ran. (3 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete 2: [ RUN ] delete.no_given_thresholds 2: [ OK ] delete.no_given_thresholds (3 ms) 2: [----------] 1 test from delete (3 ms total) 2: 2: [----------] 8 tests from insert 2: [ RUN ] insert.ibf 2: [ OK ] insert.ibf (2 ms) 2: [ RUN ] insert.ibf_no_given_thresholds 2: [ OK ] insert.ibf_no_given_thresholds (1 ms) 2: [ RUN ] insert.ibf_delete 2: [ OK ] insert.ibf_delete (4 ms) 2: [ RUN ] insert.ibf_delete_no_given_threshold 2: [ OK ] insert.ibf_delete_no_given_threshold (2 ms) 2: [ RUN ] insert.ibfmin 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate 3: [ RUN ] estimate.small_example 3: [ OK ] estimate.small_example (2 ms) 3: [ RUN ] estimate.small_example_uncompressed 3: [ OK ] estimate.small_example_uncompressed (1 ms) 3: [ RUN ] estimate.small_example_gene_not_found 3: [ OK ] estimate.small_example_gene_not_found (0 ms) 3: [ RUN ] estimate.small_example_different_expressions_per_level 3: [ OK ] estimate.small_example_different_expressions_per_level (1 ms) 3: [ RUN ] estimate.small_example_different_expressions_per_level_normalization_1 3: [ OK ] estimate.small_example_different_expressions_per_level_normalization_1 (0 ms) 3: [ RUN ] estimate.small_example_different_expressions_per_level_normalization_1_uncompressed 3: [ OK ] estimate.small_example_different_expressions_per_level_normalization_1_uncompressed (0 ms) 3: [ RUN ] estimate.example 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 8 tests from 1 test suite. 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf 4: [ RUN ] ibf.given_expression_thresholds 4: [ OK ] ibf.given_expression_thresholds (1 ms) 4: [ RUN ] ibf.given_expression_thresholds_include_file 4: [ OK ] ibf.given_expression_thresholds_include_file (0 ms) 4: [ RUN ] ibf.given_expression_thresholds_exclude_file 4: [ OK ] ibf.given_expression_thresholds_exclude_file (0 ms) 4: [ RUN ] ibf.no_given_expression_thresholds 4: [ OK ] ibf.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibf.expression_thresholds_by_genome 4: [ OK ] ibf.expression_thresholds_by_genome (0 ms) 4: [ RUN ] ibf.throws 4: [ OK ] ibf.throws (0 ms) 4: [ RUN ] ibf.given_cutoffs 4: [ OK ] ibf.given_cutoffs (0 ms) 4: [ RUN ] ibf.different_file_sizes 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 4 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 4 tests from ibfmin 5: [ RUN ] ibfmin.given_expression_thresholds 5: [ OK ] ibfmin.given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin.no_given_expression_thresholds 5: [ OK ] ibfmin.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin.expression_thresholds_by_genome 5: [ OK ] ibfmin.expression_thresholds_by_genome (1 ms) 5: [ RUN ] ibfmin.different_shape 5: [ OK ] ibfmin.different_shape (0 ms) 5: [----------] 4 tests from ibfmin (2 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 4 tests from 1 test suite ran. (3 ms total) 5: [ PASSED ] 4 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 8 tests from minimiser 6: [ RUN ] minimiser.small_example 6: [ OK ] minimiser.small_example (2 ms) 6: [ RUN ] minimiser.small_example_different_shape 6: [ OK ] minimiser.small_example_different_shape (0 ms) 6: [ RUN ] minimiser.small_example_samplewise 6: [ OK ] minimiser.small_example_samplewise (0 ms) 6: [ RUN ] minimiser.cutoff_by_filesize 6: [ OK ] minimiser.cutoff_by_filesize (0 ms) 6: [ RUN ] minimiser.small_example_two_threads 6: [ OK ] minimiser.small_example_two_threads (1 ms) 6: [ RUN ] minimiser.small_example_include 6: [ OK ] minimiser.small_example_include (0 ms) 6: [ RUN ] minimiser.small_example_exclude 6: [ OK ] minimiser.small_example_exclude (0 ms) 6: [ RUN ] minimiser.small_example_shape 6: [ OK ] minimiser.small_example_shape (0 ms) 6: [----------] 8 tests from minimiser (6 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 8 tests from 1 test suite ran. (6 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options 7: [ OK ] needle_options_test.no_options (4 ms) 7: [ RUN ] needle_options_test.fail_no_argument 7: [ OK ] needle_options_test.fail_no_argument (4 ms) 7: [----------] 2 tests from needle_options_test (8 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 2 tests from 1 test suite ran. (8 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options 8: [ OK ] ibf_options_test.ibf_no_options (4 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options 9: [ OK ] insert_options_test.insert_no_options (4 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options 10: [ OK ] minimiser_options_test.no_options (4 ms) 10: [ RUN ] minimiser_options_test.fail_no_argument 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. 11: [----------] Global test environment set-up. 11: [----------] 5 tests from estimate_options_test 11: [ RUN ] estimate_options_test.no_options 12: Running main() from ./googletest/src/gtest_main.cc 12: [==========] Running 8 tests from 2 test suites. 12: [----------] Global test environment set-up. 12: [----------] 5 tests from count_options_test 12: [ RUN ] count_options_test.no_options 1/13 Test #1: test/api/count_test ............... Passed 0.02 sec 2/13 Test #5: test/api/ibfmin_test .............. Passed 0.02 sec 3/13 Test #6: test/api/minimiser_test ........... Passed 0.01 sec 2: [ OK ] insert.ibfmin (1 ms) 2: [ RUN ] insert.ibfmin_delete 4/13 Test #7: test/cli/needle_options_test ...... Passed 0.01 sec 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options 11: [ OK ] estimate_options_test.no_options (4 ms) 11: [ RUN ] estimate_options_test.fail_no_argument 8: [ OK ] ibf_options_test.ibf_fail_no_argument (4 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction 2: [ OK ] insert.ibfmin_delete (2 ms) 2: [ RUN ] insert.ibfmin_no_given_thresholds 9: [ OK ] insert_options_test.insert_fail_no_argument (4 ms) 9: [ RUN ] insert_options_test.with_argument 12: [ OK ] count_options_test.no_options (4 ms) 12: [ RUN ] count_options_test.fail_no_argument 2: [ OK ] insert.ibfmin_no_given_thresholds (1 ms) 2: [ RUN ] insert.delete_ibfmin_no_given_thresholds 10: [ OK ] minimiser_options_test.fail_no_argument (4 ms) 10: [ RUN ] minimiser_options_test.with_arguments 13: [ OK ] delete_options_test.delete_no_options (4 ms) 13: [ RUN ] delete_options_test.with_argument 11: [ OK ] estimate_options_test.fail_no_argument (4 ms) 11: [ RUN ] estimate_options_test.with_argument 8: [ OK ] ibf_options_test.ibf_fail_contradiction (4 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 2: [ OK ] insert.delete_ibfmin_no_given_thresholds (2 ms) 2: [----------] 8 tests from insert (19 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 9 tests from 2 test suites ran. (22 ms total) 2: [ PASSED ] 9 tests. 5/13 Test #2: test/api/insert_delete_test ....... Passed 0.03 sec 12: [ OK ] count_options_test.fail_no_argument (4 ms) 12: [ RUN ] count_options_test.with_arguments 10: [ OK ] minimiser_options_test.with_arguments (5 ms) 10: [ RUN ] minimiser_options_test.cutoff 8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (5 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_fpr 12: [ OK ] count_options_test.with_arguments (7 ms) 12: [ RUN ] count_options_test.multithreads 8: [ OK ] ibf_options_test.ibf_fail_no_fpr (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs 10: [ OK ] minimiser_options_test.cutoff (5 ms) 10: [ RUN ] minimiser_options_test.multiple_sample 8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (4 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument 10: [ OK ] minimiser_options_test.multiple_sample (5 ms) 10: [ RUN ] minimiser_options_test.multithreads 12: [ OK ] count_options_test.multithreads (6 ms) 12: [ RUN ] count_options_test.paired 10: [ OK ] minimiser_options_test.multithreads (5 ms) 10: [ RUN ] minimiser_options_test.paired 12: [ OK ] count_options_test.paired (5 ms) 12: [----------] 5 tests from count_options_test (29 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options 10: [ OK ] minimiser_options_test.paired (5 ms) 10: [ RUN ] minimiser_options_test.invalid_argument 12: [ OK ] genome_options_test.no_options (5 ms) 12: [ RUN ] genome_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.invalid_argument (4 ms) 10: [----------] 8 tests from minimiser_options_test (41 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 8 tests from 1 test suite ran. (41 ms total) 10: [ PASSED ] 8 tests. 6/13 Test #10: test/cli/minimiser_options_test ... Passed 0.04 sec 12: [ OK ] genome_options_test.fail_no_argument (5 ms) 12: [ RUN ] genome_options_test.with_arguments 12: [ OK ] genome_options_test.with_arguments (5 ms) 12: [----------] 3 tests from genome_options_test (16 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 8 tests from 2 test suites ran. (45 ms total) 12: [ PASSED ] 8 tests. 7/13 Test #12: test/cli/count_options_test ....... Passed 0.05 sec 4: [ OK ] ibf.different_file_sizes (1560 ms) 4: [----------] 8 tests from ibf (1564 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 8 tests from 1 test suite ran. (1564 ms total) 4: [ PASSED ] 8 tests. 8/13 Test #4: test/api/ibf_test ................. Passed 1.57 sec 8: [ OK ] ibf_options_test.ibf_with_argument (2499 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_options 3: [ OK ] estimate.example (3089 ms) 3: [ RUN ] estimate.example_multiple_threads 11: [ OK ] estimate_options_test.with_argument (3745 ms) 11: [ RUN ] estimate_options_test.with_argument_normalization_method 9: [ OK ] insert_options_test.with_argument (3921 ms) 9: [----------] 3 tests from insert_options_test (3929 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 3 tests from 1 test suite ran. (3929 ms total) 9: [ PASSED ] 3 tests. 9/13 Test #9: test/cli/insert_options_test ...... Passed 3.93 sec 8: [ OK ] ibf_options_test.ibf_with_argument_with_options (2765 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape 3: [ OK ] estimate.example_multiple_threads (3097 ms) 3: [ RUN ] estimate.example_different_expressions_per_level 3: [ OK ] estimate.example_different_expressions_per_level (1119 ms) 3: [ RUN ] estimate.example_different_expressions_per_level_multiple_threads 13: [ OK ] delete_options_test.with_argument (7587 ms) 13: [----------] 2 tests from delete_options_test (7591 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 2 tests from 1 test suite ran. (7591 ms total) 13: [ PASSED ] 2 tests. 10/13 Test #13: test/cli/delete_options_test ...... Passed 7.60 sec 3: [ OK ] estimate.example_different_expressions_per_level_multiple_threads (1544 ms) 3: [----------] 10 tests from estimate (8857 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 10 tests from 1 test suite ran. (8857 ms total) 3: [ PASSED ] 10 tests. 11/13 Test #3: test/api/estimate_test ............ Passed 8.86 sec 11: [ OK ] estimate_options_test.with_argument_normalization_method (19585 ms) 11: [ RUN ] estimate_options_test.with_argument_out 8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (26554 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options 8: [ OK ] ibf_options_test.ibfmin_no_options (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument 8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr 8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs 8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument 8: [ OK ] ibf_options_test.ibfmin_with_argument (4 ms) 8: [ RUN ] ibf_options_test.compressed 8: [ OK ] ibf_options_test.compressed (4 ms) 8: [ RUN ] ibf_options_test.more_hash_functions 8: [ OK ] ibf_options_test.more_hash_functions (4 ms) 8: [ RUN ] ibf_options_test.expression_thresholds 8: [ OK ] ibf_options_test.expression_thresholds (3 ms) 8: [----------] 19 tests from ibf_options_test (31887 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 19 tests from 1 test suite ran. (31887 ms total) 8: [ PASSED ] 19 tests. 12/13 Test #8: test/cli/ibf_options_test ......... Passed 31.89 sec 11: [ OK ] estimate_options_test.with_argument_out (22082 ms) 11: [----------] 5 tests from estimate_options_test (45423 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 5 tests from 1 test suite ran. (45423 ms total) 11: [ PASSED ] 5 tests. 13/13 Test #11: test/cli/estimate_options_test .... Passed 45.43 sec 100% tests passed, 0 tests failed out of 13 Total Test time (real) = 210.03 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.2+ds-2_amd64.deb'. dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.2+ds-2_amd64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.2+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.2+ds-2_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.2+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4167960/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4167960/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4167960 and its subdirectories I: Current time: Sat Jun 14 07:13:59 +14 2025 I: pbuilder-time-stamp: 1749834839