I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 26 02:24:58 +14 2024 I: pbuilder-time-stamp: 1714047898 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 12:45:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 25 12:25 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=29ac99cdb9cd43ccb118d84c90a9925e LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2643150 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XrTqBlLh/pbuilderrc_AxXW --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XrTqBlLh/b2 --logfile b2/build.log racon_1.5.0-3.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 22 13:10 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19892 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbioparser-dev{a} libbiosoup-dev{a} libcereal-dev{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libspoa-dev{a} libspoa7.0.0{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 43 newly installed, 0 to remove and 0 not upgraded. Need to get 21.2 MB of archives. After unpacking 82.2 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: cmake but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libgnutls30 [3.8.3-1 (now)] 2) libhogweed6 [3.9.1-2+b1 (now)] 3) libnettle8 [3.9.1-2+b1 (now)] 4) libssl3 [3.1.5-1 (now)] Install the following packages: 5) cmake [3.28.3-1 (testing)] 6) cmake-data [3.28.3-1 (testing)] 7) libarchive13t64 [3.7.2-2 (testing)] 8) libbrotli1 [1.1.0-2+b3 (testing)] 9) libcurl4 [8.5.0-2 (testing)] 10) libexpat1 [2.6.2-1 (testing)] 11) libgnutls30t64 [3.8.5-2 (testing)] 12) libhogweed6t64 [3.9.1-2.2 (testing)] 13) libjsoncpp25 [1.9.5-6+b2 (testing)] 14) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] 15) libnettle8t64 [3.9.1-2.2 (testing)] 16) libnghttp2-14 [1.59.0-1 (testing)] 17) libproc2-0 [2:4.0.4-4 (testing)] 18) libpsl5t64 [0.21.2-1.1 (testing)] 19) librhash0 [1.4.3-3+b1 (testing)] 20) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] 21) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] 22) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] 23) libssh2-1t64 [1.11.0-4.1+b2 (testing)] 24) libssl3t64 [3.2.1-3 (testing)] 25) libuv1 [1.48.0-1 (testing)] 26) procps [2:4.0.4-4 (testing)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgtest-dev{a} libhogweed6t64{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnettle8t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libssl3t64{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages will be REMOVED: libgnutls30{a} libhogweed6{a} libnettle8{a} libssl3{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 65 newly installed, 4 to remove and 0 not upgraded. Need to get 41.3 MB of archives. After unpacking 140 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.9.1-2.2 [296 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.9.1-2.2 [328 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.5-2 [1437 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libcurl4 amd64 8.5.0-2 [427 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libuv1 amd64 1.48.0-1 [147 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.28.3-1 [2128 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.28.3-1 [10.5 MB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 47 http://deb.debian.org/debian trixie/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1 [109 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 googletest all 1.14.0-1 [512 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3+b1 [919 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 57 http://deb.debian.org/debian trixie/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libedlib1 amd64 1.2.7-5 [17.7 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libedlib-dev amd64 1.2.7-5 [22.5 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.14.0-1+b1 [250 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libspoa7.0.0 amd64 4.1.4-1 [70.3 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libspoa-dev amd64 4.1.4-1 [9400 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] Get: 65 http://deb.debian.org/debian trixie/main amd64 rampler amd64 2.1.1-1 [21.2 kB] Fetched 41.3 MB in 6s (7487 kB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.9~). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19892 files and directories currently installed.) Removing libnettle8:amd64 (3.9.1-2+b1) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19883 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2_amd64.deb ... Unpacking libnettle8t64:amd64 (3.9.1-2.2) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19885 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.9.1-2.2) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.8.1). (Reading database ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (4.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu 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CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp [ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (34 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (27 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (20 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (211 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (44 ms) [----------] 5 tests from RaconInitializeTest (340 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.009112 s [racon::Polisher::initialize] loaded sequences 0.431245 s [racon::Polisher::initialize] loaded overlaps 0.015499 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.191939 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.279959 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.355727 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.423763 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.507974 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.579979 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.723779 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.831650 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.891622 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.935693 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.023912 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.091668 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.172011 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.227741 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.351153 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.559182 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.619136 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.807678 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.931581 s [racon::Polisher::initialize] aligning overlaps [====================] 1.963683 s [racon::Polisher::initialize] transformed data into windows 0.031732 s [racon::Polisher::polish] generating consensus [=> ] 0.399964 s [racon::Polisher::polish] generating consensus [==> ] 0.707908 s [racon::Polisher::polish] generating consensus [===> ] 0.963293 s [racon::Polisher::polish] generating consensus [====> ] 1.199636 s [racon::Polisher::polish] generating consensus [=====> ] 1.336413 s [racon::Polisher::polish] generating consensus [======> ] 1.512281 s [racon::Polisher::polish] generating consensus [=======> ] 1.696202 s [racon::Polisher::polish] generating consensus [========> ] 1.996306 s [racon::Polisher::polish] generating consensus [=========> ] 2.276252 s [racon::Polisher::polish] generating consensus [==========> ] 2.312041 s [racon::Polisher::polish] generating consensus [===========> ] 2.488170 s [racon::Polisher::polish] generating consensus [============> ] 3.268062 s [racon::Polisher::polish] generating consensus [=============> ] 4.552228 s [racon::Polisher::polish] generating consensus [==============> ] 4.553056 s [racon::Polisher::polish] generating consensus [===============> ] 4.553871 s [racon::Polisher::polish] generating consensus [================> ] 4.554785 s [racon::Polisher::polish] generating consensus [=================> ] 4.687656 s [racon::Polisher::polish] generating consensus [==================> ] 4.876152 s [racon::Polisher::polish] generating consensus [===================>] 5.059349 s [racon::Polisher::polish] generating consensus [====================] 6.490178 s [racon::Polisher::] total = 9.109131 s [ OK ] RaconPolishingTest.ConsensusWithQualities (9328 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.021401 s [racon::Polisher::initialize] loaded sequences 0.183627 s [racon::Polisher::initialize] loaded overlaps 0.000820 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.207087 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.374938 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.583018 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.726490 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.890510 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.054359 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.525601 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.738515 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.918751 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.094481 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.323286 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.534915 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.774547 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.866962 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.002547 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.126662 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.218610 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.406449 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.422433 s [racon::Polisher::initialize] aligning overlaps [====================] 3.518470 s [racon::Polisher::initialize] transformed data into windows 0.006791 s [racon::Polisher::polish] generating consensus [=> ] 0.394391 s [racon::Polisher::polish] generating consensus [==> ] 0.940466 s [racon::Polisher::polish] generating consensus [===> ] 1.432713 s [racon::Polisher::polish] generating consensus [====> ] 1.740636 s [racon::Polisher::polish] generating consensus [=====> ] 1.964659 s [racon::Polisher::polish] generating consensus [======> ] 2.032942 s [racon::Polisher::polish] generating consensus [=======> ] 2.100595 s [racon::Polisher::polish] generating consensus [========> ] 2.148777 s [racon::Polisher::polish] generating consensus [=========> ] 2.224802 s [racon::Polisher::polish] generating consensus [==========> ] 2.517009 s [racon::Polisher::polish] generating consensus [===========> ] 2.996725 s [racon::Polisher::polish] generating consensus [============> ] 3.880569 s [racon::Polisher::polish] generating consensus [=============> ] 4.464670 s [racon::Polisher::polish] generating consensus [==============> ] 5.228187 s [racon::Polisher::polish] generating consensus [===============> ] 6.564213 s [racon::Polisher::polish] generating consensus [================> ] 7.560761 s [racon::Polisher::polish] generating consensus [=================> ] 8.783709 s [racon::Polisher::polish] generating consensus [==================> ] 9.374919 s [racon::Polisher::polish] generating consensus [===================>] 9.404421 s [racon::Polisher::polish] generating consensus [====================] 10.384361 s [racon::Polisher::] total = 14.239509 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (14440 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.013831 s [racon::Polisher::initialize] loaded sequences 0.287262 s [racon::Polisher::initialize] loaded overlaps 0.275828 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.019868 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.020092 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.020321 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.020547 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.020777 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.020970 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.031855 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.032094 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.039895 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.040185 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.040393 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.040568 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.040766 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.040956 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.041116 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.051962 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.052228 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.052398 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.052635 s [racon::Polisher::initialize] aligning overlaps [====================] 0.052790 s [racon::Polisher::initialize] transformed data into windows 0.014810 s [racon::Polisher::polish] generating consensus [=> ] 0.505858 s [racon::Polisher::polish] generating consensus [==> ] 0.711615 s [racon::Polisher::polish] generating consensus [===> ] 1.104411 s [racon::Polisher::polish] generating consensus [====> ] 1.304461 s [racon::Polisher::polish] generating consensus [=====> ] 1.424519 s [racon::Polisher::polish] generating consensus [======> ] 1.580523 s [racon::Polisher::polish] generating consensus [=======> ] 1.884554 s [racon::Polisher::polish] generating consensus [========> ] 2.024758 s [racon::Polisher::polish] generating consensus [=========> ] 2.204744 s [racon::Polisher::polish] generating consensus [==========> ] 2.704708 s [racon::Polisher::polish] generating consensus [===========> ] 2.956666 s [racon::Polisher::polish] generating consensus [============> ] 3.220602 s [racon::Polisher::polish] generating consensus [=============> ] 3.848647 s [racon::Polisher::polish] generating consensus [==============> ] 4.548836 s [racon::Polisher::polish] generating consensus [===============> ] 4.996702 s [racon::Polisher::polish] generating consensus [================> ] 5.708956 s [racon::Polisher::polish] generating consensus [=================> ] 5.896926 s [racon::Polisher::polish] generating consensus [==================> ] 6.017008 s [racon::Polisher::polish] generating consensus [===================>] 6.132689 s [racon::Polisher::polish] generating consensus [====================] 7.108795 s [racon::Polisher::] total = 7.877862 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (8036 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.021752 s [racon::Polisher::initialize] loaded sequences 0.107893 s [racon::Polisher::initialize] loaded overlaps 0.190909 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.040437 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.041230 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.041888 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.042515 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.043314 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.060692 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.061449 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.062118 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.063741 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.064639 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.065446 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.066242 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.067015 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.068045 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.068892 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.076560 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.077386 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.078107 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.078753 s [racon::Polisher::initialize] aligning overlaps [====================] 0.079376 s [racon::Polisher::initialize] transformed data into windows 0.002978 s [racon::Polisher::polish] generating consensus [=> ] 0.449533 s [racon::Polisher::polish] generating consensus [==> ] 0.933333 s [racon::Polisher::polish] generating consensus [===> ] 1.445445 s [racon::Polisher::polish] generating consensus [====> ] 1.841396 s [racon::Polisher::polish] generating consensus [=====> ] 2.053258 s [racon::Polisher::polish] generating consensus [======> ] 2.253281 s [racon::Polisher::polish] generating consensus [=======> ] 2.422040 s [racon::Polisher::polish] generating consensus [========> ] 2.657304 s [racon::Polisher::polish] generating consensus [=========> ] 2.993148 s [racon::Polisher::polish] generating consensus [==========> ] 3.401365 s [racon::Polisher::polish] generating consensus [===========> ] 4.233501 s [racon::Polisher::polish] generating consensus [============> ] 4.725528 s [racon::Polisher::polish] generating consensus [=============> ] 5.449242 s [racon::Polisher::polish] generating consensus [==============> ] 6.622090 s [racon::Polisher::polish] generating consensus [===============> ] 7.340897 s [racon::Polisher::polish] generating consensus [================> ] 7.597609 s [racon::Polisher::polish] generating consensus [=================> ] 7.804817 s [racon::Polisher::polish] generating consensus [==================> ] 7.973848 s [racon::Polisher::polish] generating consensus [===================>] 7.997590 s [racon::Polisher::polish] generating consensus [====================] 9.165135 s [racon::Polisher::] total = 9.614072 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (9703 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.009464 s [racon::Polisher::initialize] loaded sequences 0.162840 s [racon::Polisher::initialize] loaded overlaps 0.006156 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.229680 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.385683 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.578396 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.685596 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.781475 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.885871 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.133413 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.245719 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.341672 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.473535 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.613725 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.910659 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.977593 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.171568 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.342145 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.641508 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.642107 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.773619 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.997576 s [racon::Polisher::initialize] aligning overlaps [====================] 3.013575 s [racon::Polisher::initialize] transformed data into windows 0.015921 s [racon::Polisher::polish] generating consensus [=> ] 1.535594 s [racon::Polisher::polish] generating consensus [==> ] 1.536180 s [racon::Polisher::polish] generating consensus [===> ] 2.891552 s [racon::Polisher::polish] generating consensus [====> ] 2.892252 s [racon::Polisher::polish] generating consensus [=====> ] 3.731366 s [racon::Polisher::polish] generating consensus [======> ] 3.731980 s [racon::Polisher::polish] generating consensus [=======> ] 4.291346 s [racon::Polisher::polish] generating consensus [========> ] 4.292089 s [racon::Polisher::polish] generating consensus [=========> ] 5.115425 s [racon::Polisher::polish] generating consensus [==========> ] 5.116038 s [racon::Polisher::polish] generating consensus [===========> ] 6.915827 s [racon::Polisher::polish] generating consensus [============> ] 6.916412 s [racon::Polisher::polish] generating consensus [=============> ] 10.352195 s [racon::Polisher::polish] generating consensus [==============> ] 10.353061 s [racon::Polisher::polish] generating consensus [===============> ] 12.175258 s [racon::Polisher::polish] generating consensus [================> ] 12.176246 s [racon::Polisher::polish] generating consensus [=================> ] 14.146828 s [racon::Polisher::polish] generating consensus [==================> ] 14.146945 s [racon::Polisher::polish] generating consensus [===================>] 15.786815 s [racon::Polisher::polish] generating consensus [====================] 17.699326 s [racon::Polisher::] total = 21.066141 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (21290 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.024955 s [racon::Polisher::initialize] loaded sequences 0.259871 s [racon::Polisher::initialize] loaded overlaps 0.007948 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.239953 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.336513 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.443877 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.607880 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.691773 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.771801 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.000709 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.204046 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.275732 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.384310 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.560243 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.764472 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.844034 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.960734 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.083943 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.301080 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.352210 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.484187 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.595799 s [racon::Polisher::initialize] aligning overlaps [====================] 2.689653 s [racon::Polisher::initialize] transformed data into windows 0.017235 s [racon::Polisher::polish] generating consensus [=> ] 0.371947 s [racon::Polisher::polish] generating consensus [==> ] 0.672079 s [racon::Polisher::polish] generating consensus [===> ] 0.904009 s [racon::Polisher::polish] generating consensus [====> ] 1.076069 s [racon::Polisher::polish] generating consensus [=====> ] 1.164118 s [racon::Polisher::polish] generating consensus [======> ] 1.251919 s [racon::Polisher::polish] generating consensus [=======> ] 1.363945 s [racon::Polisher::polish] generating consensus [========> ] 1.516123 s [racon::Polisher::polish] generating consensus [=========> ] 1.719921 s [racon::Polisher::polish] generating consensus [==========> ] 2.116303 s [racon::Polisher::polish] generating consensus [===========> ] 2.504737 s [racon::Polisher::polish] generating consensus [============> ] 2.784121 s [racon::Polisher::polish] generating consensus [=============> ] 3.336098 s [racon::Polisher::polish] generating consensus [==============> ] 4.001747 s [racon::Polisher::polish] generating consensus [===============> ] 4.471820 s [racon::Polisher::polish] generating consensus [================> ] 4.841201 s [racon::Polisher::polish] generating consensus [=================> ] 5.292148 s [racon::Polisher::polish] generating consensus [==================> ] 5.536066 s [racon::Polisher::polish] generating consensus [===================>] 5.908247 s [racon::Polisher::polish] generating consensus [====================] 6.309874 s [racon::Polisher::] total = 9.456669 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (9543 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.320604 s [racon::Polisher::initialize] loaded sequences 0.227425 s [racon::Polisher::initialize] loaded overlaps 0.136666 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.230811 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.486979 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.550852 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.686959 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.803183 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.922926 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.014859 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.106929 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.218951 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.403157 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.586911 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.691207 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.843122 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.003119 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.094908 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.202717 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.302807 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.411154 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.547135 s [racon::Polisher::initialize] aligning overlaps [====================] 2.795177 s [racon::Polisher::initialize] transformed data into windows 0.050759 s [racon::Polisher::polish] generating consensus [=> ] 0.376371 s [racon::Polisher::polish] generating consensus [==> ] 0.672596 s [racon::Polisher::polish] generating consensus [===> ] 0.944668 s [racon::Polisher::polish] generating consensus [====> ] 0.945799 s [racon::Polisher::polish] generating consensus [=====> ] 1.148573 s [racon::Polisher::polish] generating consensus [======> ] 1.284622 s [racon::Polisher::polish] generating consensus [=======> ] 1.440529 s [racon::Polisher::polish] generating consensus [========> ] 1.488501 s [racon::Polisher::polish] generating consensus [=========> ] 1.948771 s [racon::Polisher::polish] generating consensus [==========> ] 2.144395 s [racon::Polisher::polish] generating consensus [===========> ] 2.316813 s [racon::Polisher::polish] generating consensus [============> ] 2.368580 s [racon::Polisher::polish] generating consensus [=============> ] 2.580519 s [racon::Polisher::polish] generating consensus [==============> ] 2.581702 s [racon::Polisher::polish] generating consensus [===============> ] 2.980373 s [racon::Polisher::polish] generating consensus [================> ] 2.981489 s [racon::Polisher::polish] generating consensus [=================> ] 3.696570 s [racon::Polisher::polish] generating consensus [==================> ] 3.940176 s [racon::Polisher::polish] generating consensus [===================>] 4.112541 s [racon::Polisher::polish] generating consensus [====================] 4.120423 s [racon::Polisher::] total = 7.661302 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (7779 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.183343 s [racon::Polisher::initialize] loaded sequences 0.204567 s [racon::Polisher::initialize] loaded overlaps 0.080345 s [racon::Polisher::initialize] aligning overlaps [=> ] 3.716101 s [racon::Polisher::initialize] aligning overlaps [==> ] 6.010951 s [racon::Polisher::initialize] aligning overlaps [===> ] 8.279009 s [racon::Polisher::initialize] aligning overlaps [====> ] 11.144113 s [racon::Polisher::initialize] aligning overlaps [=====> ] 13.799276 s [racon::Polisher::initialize] aligning overlaps [======> ] 15.587424 s [racon::Polisher::initialize] aligning overlaps [=======> ] 18.253225 s [racon::Polisher::initialize] aligning overlaps [========> ] 21.580286 s [racon::Polisher::initialize] aligning overlaps [=========> ] 24.494924 s [racon::Polisher::initialize] aligning overlaps [==========> ] 28.084970 s [racon::Polisher::initialize] aligning overlaps [===========> ] 31.115292 s [racon::Polisher::initialize] aligning overlaps [============> ] 34.670942 s [racon::Polisher::initialize] aligning overlaps [=============> ] 38.258950 s [racon::Polisher::initialize] aligning overlaps [==============> ] 40.483528 s [racon::Polisher::initialize] aligning overlaps [===============> ] 43.319844 s [racon::Polisher::initialize] aligning overlaps [================> ] 46.100610 s [racon::Polisher::initialize] aligning overlaps [=================> ] 48.827953 s [racon::Polisher::initialize] aligning overlaps [==================> ] 51.823790 s [racon::Polisher::initialize] aligning overlaps [===================>] 55.393138 s [racon::Polisher::initialize] aligning overlaps [====================] 56.374233 s [racon::Polisher::initialize] transformed data into windows 0.925489 s [racon::Polisher::polish] generating consensus [=> ] 14.867967 s [racon::Polisher::polish] generating consensus [==> ] 23.604611 s [racon::Polisher::polish] generating consensus [===> ] 38.519807 s [racon::Polisher::polish] generating consensus [====> ] 48.131768 s [racon::Polisher::polish] generating consensus [=====> ] 57.391777 s [racon::Polisher::polish] generating consensus [======> ] 73.150841 s [racon::Polisher::polish] generating consensus [=======> ] 88.039683 s [racon::Polisher::polish] generating consensus [========> ] 98.403097 s [racon::Polisher::polish] generating consensus [=========> ] 109.214765 s [racon::Polisher::polish] generating consensus [==========> ] 122.310733 s [racon::Polisher::polish] generating consensus [===========> ] 133.874773 s [racon::Polisher::polish] generating consensus [============> ] 142.622919 s [racon::Polisher::polish] generating consensus [=============> ] 155.654728 s [racon::Polisher::polish] generating consensus [==============> ] 170.739587 s [racon::Polisher::polish] generating consensus [===============> ] 187.251727 s [racon::Polisher::polish] generating consensus [================> ] 191.190747 s [racon::Polisher::polish] generating consensus [=================> ] 204.071342 s [racon::Polisher::polish] generating consensus [==================> ] 222.247496 s [racon::Polisher::polish] generating consensus [===================>] 230.158929 s [racon::Polisher::polish] generating consensus [====================] 233.260759 s [racon::Polisher::] total = 291.038842 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (291123 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.192133 s [racon::Polisher::initialize] loaded sequences 0.183366 s [racon::Polisher::initialize] loaded overlaps 0.140089 s [racon::Polisher::initialize] aligning overlaps [=> ] 5.235677 s [racon::Polisher::initialize] aligning overlaps [==> ] 8.371896 s [racon::Polisher::initialize] aligning overlaps [===> ] 10.938820 s [racon::Polisher::initialize] aligning overlaps [====> ] 12.642857 s [racon::Polisher::initialize] aligning overlaps [=====> ] 15.042831 s [racon::Polisher::initialize] aligning overlaps [======> ] 18.363540 s [racon::Polisher::initialize] aligning overlaps [=======> ] 21.983626 s [racon::Polisher::initialize] aligning overlaps [========> ] 24.903698 s [racon::Polisher::initialize] aligning overlaps [=========> ] 29.039762 s [racon::Polisher::initialize] aligning overlaps [==========> ] 31.659759 s [racon::Polisher::initialize] aligning overlaps [===========> ] 33.534768 s [racon::Polisher::initialize] aligning overlaps [============> ] 34.630859 s [racon::Polisher::initialize] aligning overlaps [=============> ] 36.594739 s [racon::Polisher::initialize] aligning overlaps [==============> ] 41.084119 s [racon::Polisher::initialize] aligning overlaps [===============> ] 45.005061 s [racon::Polisher::initialize] aligning overlaps [================> ] 49.038939 s [racon::Polisher::initialize] aligning overlaps [=================> ] 52.251665 s [racon::Polisher::initialize] aligning overlaps [==================> ] 55.875953 s [racon::Polisher::initialize] aligning overlaps [===================>] 57.899819 s [racon::Polisher::initialize] aligning overlaps [====================] 60.084269 s [racon::Polisher::initialize] transformed data into windows 0.119211 s [racon::Polisher::polish] generating consensus [=> ] 25.923401 s [racon::Polisher::polish] generating consensus [==> ] 48.356062 s [racon::Polisher::polish] generating consensus [===> ] 72.238651 s [racon::Polisher::polish] generating consensus [====> ] 89.787481 s [racon::Polisher::polish] generating consensus [=====> ] 110.530409 s [racon::Polisher::polish] generating consensus [======> ] 130.766478 s [racon::Polisher::polish] generating consensus [=======> ] 152.323566 s [racon::Polisher::polish] generating consensus [========> ] 166.962538 s [racon::Polisher::polish] generating consensus [=========> ] 189.938550 s [racon::Polisher::polish] generating consensus [==========> ] 216.182764 s [racon::Polisher::polish] generating consensus [===========> ] 234.459379 s [racon::Polisher::polish] generating consensus [============> ] 260.350748 s [racon::Polisher::polish] generating consensus [=============> ] 283.898300 s [racon::Polisher::polish] generating consensus [==============> ] 303.863471 s [racon::Polisher::polish] generating consensus [===============> ] 322.571172 s [racon::Polisher::polish] generating consensus [================> ] 325.938452 s [racon::Polisher::polish] generating consensus [=================> ] 342.586759 s [racon::Polisher::polish] generating consensus [==================> ] 359.023515 s [racon::Polisher::polish] generating consensus [===================>] 374.062914 s [racon::Polisher::polish] generating consensus [====================] 377.300791 s [racon::Polisher::] total = 438.030966 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (438187 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.516341 s [racon::Polisher::initialize] loaded sequences 0.491521 s [racon::Polisher::initialize] loaded overlaps 0.171069 s [racon::Polisher::initialize] aligning overlaps [=> ] 4.548393 s [racon::Polisher::initialize] aligning overlaps [==> ] 7.452357 s [racon::Polisher::initialize] aligning overlaps [===> ] 10.592660 s [racon::Polisher::initialize] aligning overlaps [====> ] 14.387458 s [racon::Polisher::initialize] aligning overlaps [=====> ] 17.269776 s [racon::Polisher::initialize] aligning overlaps [======> ] 21.259468 s [racon::Polisher::initialize] aligning overlaps [=======> ] 25.147411 s [racon::Polisher::initialize] aligning overlaps [========> ] 31.795489 s [racon::Polisher::initialize] aligning overlaps [=========> ] 38.507519 s [racon::Polisher::initialize] aligning overlaps [==========> ] 42.483462 s [racon::Polisher::initialize] aligning overlaps [===========> ] 42.888216 s [racon::Polisher::initialize] aligning overlaps [============> ] 44.660282 s [racon::Polisher::initialize] aligning overlaps [=============> ] 50.184357 s [racon::Polisher::initialize] aligning overlaps [==============> ] 54.167484 s [racon::Polisher::initialize] aligning overlaps [===============> ] 60.017324 s [racon::Polisher::initialize] aligning overlaps [================> ] 64.972350 s [racon::Polisher::initialize] aligning overlaps [=================> ] 68.953736 s [racon::Polisher::initialize] aligning overlaps [==================> ] 73.292610 s [racon::Polisher::initialize] aligning overlaps [===================>] 76.968324 s [racon::Polisher::initialize] aligning overlaps [====================] 77.816943 s [racon::Polisher::initialize] transformed data into windows 1.038534 s [racon::Polisher::polish] generating consensus [=> ] 18.907668 s [racon::Polisher::polish] generating consensus [==> ] 29.735913 s [racon::Polisher::polish] generating consensus [===> ] 45.324672 s [racon::Polisher::polish] generating consensus [====> ] 58.227758 s [racon::Polisher::polish] generating consensus [=====> ] 71.974998 s [racon::Polisher::polish] generating consensus [======> ] 85.563088 s [racon::Polisher::polish] generating consensus [=======> ] 102.879343 s [racon::Polisher::polish] generating consensus [========> ] 116.696067 s [racon::Polisher::polish] generating consensus [=========> ] 129.676266 s [racon::Polisher::polish] generating consensus [==========> ] 150.019115 s [racon::Polisher::polish] generating consensus [===========> ] 169.107736 s [racon::Polisher::polish] generating consensus [============> ] 186.035235 s [racon::Polisher::polish] generating consensus [=============> ] 202.090189 s [racon::Polisher::polish] generating consensus [==============> ] 214.284020 s [racon::Polisher::polish] generating consensus [===============> ] 227.499783 s [racon::Polisher::polish] generating consensus [================> ] 236.412167 s [racon::Polisher::polish] generating consensus [=================> ] 249.059983 s [racon::Polisher::polish] generating consensus [==================> ] 254.848296 s [racon::Polisher::polish] generating consensus [===================>] 258.731720 s [racon::Polisher::polish] generating consensus [====================] 260.453939 s [racon::Polisher::] total = 340.512065 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (340695 ms) [----------] 10 tests from RaconPolishingTest (1150169 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (1150510 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2643150 and its subdirectories I: Current time: Fri Apr 26 02:54:31 +14 2024 I: pbuilder-time-stamp: 1714049671